Title: Regularization for Variable Selection in Model-Based Clustering
and Discriminant Analysis
Description: Performs a regularization approach to variable selection in the
model-based clustering and classification frameworks.
First, the variables are arranged in order with a lasso-like procedure.
Second, the method of Maugis, Celeux, and Martin-Magniette (2009, 2011)
is adapted to define the role of variables in the two frameworks.
Author: Mohammed Sedki, Gilles Celeux, Cathy Maugis-Rabusseau
Maintainer: Mohammed Sedki <mohammed.sedki@u-psud.fr>
Diff between SelvarMix versions 1.0 dated 2014-08-27 and 1.1 dated 2015-09-20
DESCRIPTION | 20 +++--- MD5 | 20 +++--- NAMESPACE | 6 + R/ClusteringEMGlasso.R | 33 +++++----- R/DiscriminantAnalysisGlasso.R | 18 +++-- R/ModelSelectionClust.R | 4 - R/SelvarClustLasso.R | 7 -- R/SelvarLearnLasso.R | 9 -- R/VariableSelection.R | 19 ++---- src/RcppExports.cpp | 128 ++++++++++++++++------------------------- src/critClust.cpp | 109 ++++++++++++++++++---------------- 11 files changed, 177 insertions(+), 196 deletions(-)
Title: Item Response Theory via Shiny
Description: Interactive shiny application for running Item Response Theory
analysis.
Author: William Kyle Hamilton <kyle.hamilton@gmail.com>, Atsushi Mizumoto
<atsushi@mizumot.com>
Maintainer: William Kyle Hamilton <kyle.hamilton@gmail.com>
Diff between IRTShiny versions 1.0 dated 2014-11-25 and 1.1 dated 2015-09-20
DESCRIPTION | 12 MD5 | 14 NAMESPACE | 1 NEWS |only R/IRTShiny.R | 42 - README.md |only inst/IRT/server.R | 1848 +++++++++++++++++++++++++++--------------------------- inst/IRT/ui.R | 713 +++++++++++--------- man/startIRT.Rd | 54 - 9 files changed, 1377 insertions(+), 1307 deletions(-)
Title: Using Fonts More Easily in R Graphs
Description: Making it easy to use various types of fonts
('TrueType', 'OpenType', Type 1, web fonts, etc.) in R graphs, and
supporting most output formats of R graphics including PNG, PDF and
SVG. Text glyphs will be converted into polygons or raster images,
hence after the plot has been created, it no longer relies on the font files.
No external software such as Ghostscript is needed to use this package.
Author: Yixuan Qiu and authors/contributors of the
included software. See file AUTHORS for details.
Maintainer: Yixuan Qiu <yixuan.qiu@cos.name>
Diff between showtext versions 0.4-2 dated 2015-05-24 and 0.4-3 dated 2015-09-20
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NAMESPACE | 2 ++ inst/NEWS.Rd | 14 ++++++++++---- src/util.h | 13 +++++++++---- 5 files changed, 30 insertions(+), 17 deletions(-)
Title: Tools for Selective Inference
Description: New tools for inference after selection, for use
with forward stepwise regression, least angle regression, the
lasso, and the many means problem.
Author: Ryan Tibshirani, Rob Tibshirani, Jonathan Taylor,
Stephen Reid
Maintainer: Rob Tibshirani <tibs@stanford.edu>
Diff between selectiveInference versions 1.0.2 dated 2015-08-21 and 1.1.0 dated 2015-09-20
DESCRIPTION | 16 ++++--- MD5 | 27 ++++++------ NAMESPACE | 3 - R/funs.common.R | 11 +++-- R/funs.fixed.R | 25 ++++++++--- R/funs.fs.R | 45 ++++++++++++++------- R/funs.inf.R | 96 +++++++++++++++++++++++++++++++++------------- R/funs.lar.R | 66 ++++++++++++++++++------------- man/estimateLambda.Rd |only man/fixedLassoInf.Rd | 20 ++++++--- man/fs.Rd | 23 ++++++----- man/fsInf.Rd | 18 ++++++-- man/lar.Rd | 6 +- man/larInf.Rd | 21 +++++++--- man/selectiveInference.Rd | 48 +++++++++++++++++++---- 15 files changed, 289 insertions(+), 136 deletions(-)
More information about selectiveInference at CRAN
Permanent link
Title: Convert R Graphics to Flash Animations
Description: Using the Ming library
(http://www.libming.org/) to create Flash animations.
Users can either use the SWF device swf() to generate SWF file
directly through plotting functions like plot() and lines(),
or convert images of other formats (SVG, PNG, JPEG) into SWF.
Author: Yixuan Qiu, Yihui Xie, Cameron Bracken and authors of included
software. See file AUTHORS for details.
Maintainer: Yixuan Qiu <yixuan.qiu@cos.name>
Diff between R2SWF versions 0.9 dated 2015-02-26 and 0.9-1 dated 2015-09-20
R2SWF-0.9-1/R2SWF/DESCRIPTION | 10 +++++----- R2SWF-0.9-1/R2SWF/MD5 | 20 ++++++++++---------- R2SWF-0.9-1/R2SWF/NAMESPACE | 3 +++ R2SWF-0.9-1/R2SWF/inst/NEWS.Rd |only R2SWF-0.9-1/R2SWF/man/dev2swf.Rd | 3 ++- R2SWF-0.9-1/R2SWF/man/file2swf.Rd | 3 ++- R2SWF-0.9-1/R2SWF/man/image2swf.Rd | 3 ++- R2SWF-0.9-1/R2SWF/man/svg2swf.Rd | 3 ++- R2SWF-0.9-1/R2SWF/man/swf.Rd | 3 ++- R2SWF-0.9-1/R2SWF/man/swf2html.Rd | 3 ++- R2SWF-0.9-1/R2SWF/src/swfFont.h | 11 ++++++++--- R2SWF-0.9/R2SWF/NEWS |only 12 files changed, 38 insertions(+), 24 deletions(-)
Title: Datasets for the R/qtl Book
Description: Datasets for the book, A Guide to QTL Mapping with R/qtl.
Author: Karl W Broman <kbroman@biostat.wisc.edu>
Maintainer: Karl W Broman <kbroman@biostat.wisc.edu>
Diff between qtlbook versions 0.18-1 dated 2011-11-29 and 0.18-3 dated 2015-09-20
DESCRIPTION | 13 +++++++------ MD5 | 24 +++++++++++++----------- README.md |only data/ch3a.RData |binary data/ch3b.RData |binary data/ch3c.RData |binary data/gutlength.RData |binary data/iron.RData |binary data/myocard.RData |binary data/nf1.RData |binary data/ovar.RData |binary data/trout.RData |binary inst/README.md |only inst/STATUS.txt | 36 ++++++++++++++++++++---------------- 14 files changed, 40 insertions(+), 33 deletions(-)
Title: Common Infrastructure for Extensions of Exponential Random Graph
Models
Description: Datasets and definitions of generic functions used in dependencies of the xergm package.
Author: Philip Leifeld [aut, cre]
Maintainer: Philip Leifeld <philip.leifeld@eawag.ch>
Diff between xergm.common versions 1.5.1 dated 2015-08-03 and 1.5.4 dated 2015-09-20
DESCRIPTION | 17 ++++++++++------- MD5 | 14 +++++++++----- NAMESPACE | 11 +++++++++++ R/preprocess.R |only R/xergm.common.R | 32 +------------------------------- data/chemnet.rda |binary data/knecht.rda |binary man/adjust.Rd |only man/handleMissings.Rd |only man/preprocess.Rd |only 10 files changed, 31 insertions(+), 43 deletions(-)
Title: Application in R for Queueing Analysis and Simulation
Description: Provides functions to compute the main characteristics of the
following queueing models: M/M/1, M/M/s, M/M/1/k, M/M/s/k, M/M/1/Inf/H, M/
M/s/Inf/H, M/M/s/Inf/H with Y replacements, M/M/Inf, Open Jackson Networks
and Closed Jackson Networks. Moreover, it is also possible to simulate
similar queueing models with any type of arrival or service distribution: G/
G/1, G/G/s, G/G/1/k, G/G/s/k, G/G/1/Inf/H, G/G/s/Inf/H, G/G/s/Inf/H with Y
replacements, Open Networks and Closed Networks. Finally, contains functions
for fit data to a statistic distribution.
Author: Borja Varela
Maintainer: Borja Varela <borja.varela.brea@gmail.com>
Diff between arqas versions 1.1 dated 2015-06-15 and 1.3 dated 2015-09-20
arqas-1.1/arqas/man/summary.MarkovianModel.Rd |only arqas-1.3/arqas/DESCRIPTION | 12 arqas-1.3/arqas/MD5 | 44 + arqas-1.3/arqas/NAMESPACE | 7 arqas-1.3/arqas/R/1_ModelsHeader.R | 56 +- arqas-1.3/arqas/R/2_SimpleModels.R | 5 arqas-1.3/arqas/R/3_ComplexModels.R | 28 - arqas-1.3/arqas/R/4_NetworkModels.R | 54 +- arqas-1.3/arqas/R/5_SimulateModels.R | 578 ++++++++++---------------- arqas-1.3/arqas/R/6_DistributionAnalysis.R | 57 +- arqas-1.3/arqas/man/ClosedJacksonNetwork.Rd | 6 arqas-1.3/arqas/man/FWq.Rd | 2 arqas-1.3/arqas/man/M_M_1.Rd | 2 arqas-1.3/arqas/man/M_M_1_INF_H.Rd | 2 arqas-1.3/arqas/man/M_M_INF.Rd | 2 arqas-1.3/arqas/man/M_M_S_INF_H_Y.Rd | 6 arqas-1.3/arqas/man/OpenJacksonNetwork.Rd | 4 arqas-1.3/arqas/man/ParallelizeSimulations.Rd |only arqas-1.3/arqas/man/denscompggplot2.Rd | 2 arqas-1.3/arqas/man/fitData.Rd | 2 arqas-1.3/arqas/man/maxCustomers.Rd | 4 arqas-1.3/arqas/man/plot.MarkovianModel.Rd |only arqas-1.3/arqas/man/plot.Rd | 10 arqas-1.3/arqas/man/summary.SimulatedModel.Rd |only arqas-1.3/arqas/man/summaryFit.Rd | 8 25 files changed, 408 insertions(+), 483 deletions(-)
Title: Respondent-Driven Sampling
Description: Provides functionality for carrying out estimation
with data collected using Respondent-Driven Sampling. This includes
Heckathorn's RDS-I and RDS-II estimators as well as Gile's Sequential
Sampling estimator. The package is part of the "RDS Analyst" suite of
packages for the analysis of respondent-driven sampling data.
Author: Mark S. Handcock [aut, cre],
Krista J. Gile [aut],
Ian E. Fellows [aut],
W. Whipple Neely [aut]
Maintainer: Mark S. Handcock <handcock@stat.ucla.edu>
Diff between RDS versions 0.7-2 dated 2015-05-11 and 0.7-3 dated 2015-09-20
RDS-0.7-2/RDS/R/gf.R |only RDS-0.7-2/RDS/man/gf.weights.Rd |only RDS-0.7-2/RDS/man/impute.degree.Rd |only RDS-0.7-3/RDS/DESCRIPTION | 11 - RDS-0.7-3/RDS/MD5 | 61 ++++----- RDS-0.7-3/RDS/NAMESPACE | 41 +++++- RDS-0.7-3/RDS/R/LRT.trend.R | 48 +++---- RDS-0.7-3/RDS/R/RDS.compare.proportions.R | 6 RDS-0.7-3/RDS/R/bgk_kde.R | 8 - RDS-0.7-3/RDS/R/bootstrap-intervals.R | 125 ++++++++++++++----- RDS-0.7-3/RDS/R/control.rds.estimates.R | 27 +++- RDS-0.7-3/RDS/R/data-export.R | 6 RDS-0.7-3/RDS/R/data-import.R | 4 RDS-0.7-3/RDS/R/estimate-plots.R | 5 RDS-0.7-3/RDS/R/estimate-utils.R | 8 - RDS-0.7-3/RDS/R/gile-bootstrap.R | 172 +++++++++++++++++++++------ RDS-0.7-3/RDS/R/homophily.R | 8 - RDS-0.7-3/RDS/R/llmeC.R | 4 RDS-0.7-3/RDS/R/me.impute.R | 34 +++-- RDS-0.7-3/RDS/R/rds.data.frame-plots.R | 21 +-- RDS-0.7-3/RDS/R/rds.estimates.local.R | 31 +++- RDS-0.7-3/RDS/R/salganik-bootstrap.R | 4 RDS-0.7-3/RDS/R/summary.odds.R | 22 +-- RDS-0.7-3/RDS/R/weights.R | 17 +- RDS-0.7-3/RDS/R/wtd.stats.R |only RDS-0.7-3/RDS/man/RDS.bootstrap.intervals.Rd | 9 + RDS-0.7-3/RDS/man/compute.weights.Rd | 4 RDS-0.7-3/RDS/man/control.rds.estimates.Rd | 24 +++ RDS-0.7-3/RDS/man/homophily.estimates.Rd | 2 RDS-0.7-3/RDS/man/impute.visibility.Rd |only RDS-0.7-3/RDS/man/plot.rds.data.frame.Rd | 8 - RDS-0.7-3/RDS/man/reingold.tilford.plot.Rd | 6 RDS-0.7-3/RDS/src/bsC.c | 9 + RDS-0.7-3/RDS/src/bsC.h | 1 34 files changed, 495 insertions(+), 231 deletions(-)
Title: Symmetric File Encryption Using GPG
Description: Provides easy symmetric file encryption using GPG with
cryptographically strong defaults. Only symmetric encryption is
supported. GPG is pre-installed with most Linux distributions.
Windows users will need to install 'Gpg4win' (http://www.gpg4win.org/).
OS X users will need to install 'GPGTools' (https://gpgtools.org/).
Author: Brett Klamer [aut, cre]
Maintainer: Brett Klamer <rcrypt@brettklamer.com>
Diff between rcrypt versions 0.1.0 dated 2015-09-05 and 0.1.1 dated 2015-09-20
DESCRIPTION | 12 +-- MD5 | 18 ++-- NEWS | 11 ++- R/decrypt.R | 109 +++++++++++++++-------------- R/encrypt.R | 153 ++++++++++++++++++++---------------------- R/zzz.r | 40 +--------- README.md | 14 +-- man/decrypt.Rd | 4 - man/encrypt.Rd | 8 +- tests/testthat/test-decrypt.r | 4 - 10 files changed, 175 insertions(+), 198 deletions(-)