Title: Tools for Linear Dimension Reduction
Description: Linear dimension reduction subspaces can be uniquely defined using orthogonal projection matrices. This package provides tools to compute distances between such subspaces and to compute the average subspace.
Author: Eero Liski [aut], Klaus Nordhausen [aut, cre], Hannu Oja [aut], Anne Ruiz-Gazen [aut]
Maintainer: Klaus Nordhausen <klaus.nordhausen@utu.fi>
Diff between LDRTools versions 0.1 dated 2014-08-08 and 0.2 dated 2015-09-24
LDRTools-0.1/LDRTools/R/SubspaceInternals.R |only LDRTools-0.1/LDRTools/man/subspace-package.Rd |only LDRTools-0.2/LDRTools/DESCRIPTION | 25 +++++++++++-------------- LDRTools-0.2/LDRTools/MD5 | 14 +++++++------- LDRTools-0.2/LDRTools/R/B2P.R | 1 + LDRTools-0.2/LDRTools/R/LDRToolsInternals.R |only LDRTools-0.2/LDRTools/inst/ChangeLog.txt | 10 +++++++++- LDRTools-0.2/LDRTools/man/AOP.Rd | 3 ++- LDRTools-0.2/LDRTools/man/LDRTools-package.Rd |only LDRTools-0.2/LDRTools/man/Pdist.Rd | 3 ++- 10 files changed, 32 insertions(+), 24 deletions(-)
Title: Ecological Regression using Aggregate and Individual Data
Description: Estimating individual-level covariate-outcome associations
using aggregate data ("ecological inference") or a combination of
aggregate and individual-level data ("hierarchical related regression").
Author: Christopher Jackson <chris.jackson@mrc-bsu.cam.ac.uk>
Maintainer: Christopher Jackson <chris.jackson@mrc-bsu.cam.ac.uk>
Diff between ecoreg versions 0.2 dated 2010-08-25 and 0.2.1 dated 2015-09-24
DESCRIPTION | 18 +++++++++--------- MD5 |only NAMESPACE | 6 ++++++ R/eco.R | 14 ++++++++------ R/gh.R | 2 +- R/simul.R | 2 +- build |only inst/NEWS | 6 ++++++ inst/doc/ecoreg-guide.pdf |binary man/eco.Rd | 26 +++++++++++++++++++------- man/sim.eco.Rd | 12 ++++++++---- vignettes |only 12 files changed, 58 insertions(+), 28 deletions(-)
Title: Dunn's Test of Multiple Comparisons Using Rank Sums
Description: Computes Dunn's test (1964) for stochastic dominance and reports the results among multiple pairwise comparisons after a Kruskal-Wallis test for stochastic dominance among k groups (Kruskal and Wallis, 1952). The interpretation of stochastic dominance requires an assumption that the CDF of one group does not cross the CDF of the other. 'dunn.test' makes k(k-1)/2 multiple pairwise comparisons based on Dunn's z-test-statistic approximations to the actual rank statistics. The null hypothesis for each pairwise comparison is that the probability of observing a randomly selected value from the first group that is larger than a randomly selected value from the second group equals one half; this null hypothesis corresponds to that of the Wilcoxon-Mann-Whitney rank-sum test. Like the rank-sum test, if the data can be assumed to be continuous, and the distributions are assumed identical except for a difference in location, Dunn's test may be understood as a test for median difference. 'dunn.test' accounts for tied ranks.
Author: Alexis Dinno <alexis.dinno@pdx.edu>
Maintainer: Alexis Dinno <alexis.dinno@pdx.edu>
Diff between dunn.test versions 1.2.4 dated 2015-04-28 and 1.3.0 dated 2015-09-24
DESCRIPTION | 8 - MD5 | 8 - NAMESPACE | 4 R/dunn.test.R | 221 +++++++++++++++++++++++++++++++++---------------------- man/dunn.test.Rd | 17 ++-- 5 files changed, 157 insertions(+), 101 deletions(-)
Title: Dose-Response Modeling with Smoothing Splines
Description: Provides tools for assessing the shape of a dose-response
curve by testing linearity and non-linearity at user-defined cut-offs. It
also provides two methods of estimating a threshold dose, or the dose at
which the dose-response function transitions to significantly increasing:
bi-linear (based on pkg 'segmented') and smoothed with splines (based on
pkg 'mgcv').
Author: Greg Hixon [aut],
Chad Thompson [aut],
Anne Bichteler [aut, cre],
Liz Abraham [ctb]
Maintainer: Anne Bichteler <abichteler@toxstrategies.com>
Diff between drsmooth versions 1.0 dated 2013-12-05 and 1.9.0 dated 2015-09-24
drsmooth-1.0/drsmooth/R/dunnetts1.r |only drsmooth-1.0/drsmooth/R/dunnetts2.r |only drsmooth-1.0/drsmooth/R/dunns1.r |only drsmooth-1.0/drsmooth/R/dunns2.r |only drsmooth-1.0/drsmooth/R/firstDeriv.r |only drsmooth-1.0/drsmooth/R/smooth.r |only drsmooth-1.0/drsmooth/man/dunnetts1.Rd |only drsmooth-1.0/drsmooth/man/dunnetts2.Rd |only drsmooth-1.0/drsmooth/man/dunns1.Rd |only drsmooth-1.0/drsmooth/man/dunns2.Rd |only drsmooth-1.9.0/drsmooth/DESCRIPTION | 45 +++--- drsmooth-1.9.0/drsmooth/MD5 | 131 +++++++++-------- drsmooth-1.9.0/drsmooth/NAMESPACE | 31 ---- drsmooth-1.9.0/drsmooth/NEWS |only drsmooth-1.9.0/drsmooth/R/DIdata.R |only drsmooth-1.9.0/drsmooth/R/bartlett.r | 3 drsmooth-1.9.0/drsmooth/R/chisquare.r | 9 - drsmooth-1.9.0/drsmooth/R/dichot_smooth.R |only drsmooth-1.9.0/drsmooth/R/dosefactor.r | 1 drsmooth-1.9.0/drsmooth/R/drsmooth-package.R | 29 ++- drsmooth-1.9.0/drsmooth/R/drsmooth.R |only drsmooth-1.9.0/drsmooth/R/drsmooth.print.r | 1 drsmooth-1.9.0/drsmooth/R/dunnetts.R |only drsmooth-1.9.0/drsmooth/R/dunnetts.format.r | 1 drsmooth-1.9.0/drsmooth/R/dunnettst3.r | 19 +- drsmooth-1.9.0/drsmooth/R/dunns.R |only drsmooth-1.9.0/drsmooth/R/dunns.format.r | 1 drsmooth-1.9.0/drsmooth/R/expand.R |only drsmooth-1.9.0/drsmooth/R/firstDeriv.R |only drsmooth-1.9.0/drsmooth/R/fishers.exact.R |only drsmooth-1.9.0/drsmooth/R/jonckheere.r | 9 - drsmooth-1.9.0/drsmooth/R/lbcd.r | 4 drsmooth-1.9.0/drsmooth/R/nlaad.r | 8 - drsmooth-1.9.0/drsmooth/R/nlbcd.r | 10 - drsmooth-1.9.0/drsmooth/R/noel.r | 132 +++++++++++++----- drsmooth-1.9.0/drsmooth/R/outlier.r | 5 drsmooth-1.9.0/drsmooth/R/prelimstats.r | 24 ++- drsmooth-1.9.0/drsmooth/R/segment.plot.r | 5 drsmooth-1.9.0/drsmooth/R/segment.print.r | 1 drsmooth-1.9.0/drsmooth/R/segment.r | 14 + drsmooth-1.9.0/drsmooth/R/shapiro.r | 5 drsmooth-1.9.0/drsmooth/R/smooth.R |only drsmooth-1.9.0/drsmooth/R/spline.plot.r | 92 +++++++++--- drsmooth-1.9.0/drsmooth/data/DIdata.rda |only drsmooth-1.9.0/drsmooth/inst/CITATION |only drsmooth-1.9.0/drsmooth/inst/tests/test-nlaad.r | 20 +- drsmooth-1.9.0/drsmooth/inst/tests/test-noel.r | 81 +++++------ drsmooth-1.9.0/drsmooth/inst/tests/test-prelimstats.r | 86 +++++------ drsmooth-1.9.0/drsmooth/inst/tests/test-spline.r | 16 +- drsmooth-1.9.0/drsmooth/man/DIdata.Rd |only drsmooth-1.9.0/drsmooth/man/DRdata.Rd | 9 - drsmooth-1.9.0/drsmooth/man/bartlett.Rd | 8 - drsmooth-1.9.0/drsmooth/man/chisquare.Rd | 8 - drsmooth-1.9.0/drsmooth/man/dichot_smooth.Rd |only drsmooth-1.9.0/drsmooth/man/dosefactor.Rd | 10 - drsmooth-1.9.0/drsmooth/man/drsmooth-package.Rd |only drsmooth-1.9.0/drsmooth/man/drsmooth.Rd | 125 ++++++++++++----- drsmooth-1.9.0/drsmooth/man/drsmooth.print.Rd | 8 - drsmooth-1.9.0/drsmooth/man/dunnetts.Rd |only drsmooth-1.9.0/drsmooth/man/dunnetts.format.Rd | 14 - drsmooth-1.9.0/drsmooth/man/dunnettst3.Rd | 21 +- drsmooth-1.9.0/drsmooth/man/dunns.Rd |only drsmooth-1.9.0/drsmooth/man/dunns.format.Rd | 10 - drsmooth-1.9.0/drsmooth/man/expand.Rd |only drsmooth-1.9.0/drsmooth/man/firstDeriv.Rd | 10 - drsmooth-1.9.0/drsmooth/man/fishers.exact.Rd |only drsmooth-1.9.0/drsmooth/man/jonckheere.Rd | 8 - drsmooth-1.9.0/drsmooth/man/lbcd.Rd | 32 ++-- drsmooth-1.9.0/drsmooth/man/nlaad.Rd | 31 ++-- drsmooth-1.9.0/drsmooth/man/nlbcd.Rd | 42 ++--- drsmooth-1.9.0/drsmooth/man/noel.Rd | 99 ++++++++----- drsmooth-1.9.0/drsmooth/man/outlier.Rd | 8 - drsmooth-1.9.0/drsmooth/man/pkg_prep.Rd | 9 - drsmooth-1.9.0/drsmooth/man/prelimstats.Rd | 77 +++++----- drsmooth-1.9.0/drsmooth/man/segment.Rd | 45 ++---- drsmooth-1.9.0/drsmooth/man/segment.plot.Rd | 15 +- drsmooth-1.9.0/drsmooth/man/segment.print.Rd | 8 - drsmooth-1.9.0/drsmooth/man/shapiro.Rd | 8 - drsmooth-1.9.0/drsmooth/man/smooth.Rd | 61 +------- drsmooth-1.9.0/drsmooth/man/spline.plot.Rd | 42 +++-- drsmooth-1.9.0/drsmooth/tests/test-all.R | 1 81 files changed, 845 insertions(+), 647 deletions(-)
Title: Symbolic Differentiation
Description: R-based solution for symbolic differentiation. It admits
user-defined function as well as function substitution
in arguments of functions to be differentiated. Some symbolic
simplification is part of the work.
Author: Andrew Clausen [aut],
Serguei Sokol [aut, cre]
Maintainer: Serguei Sokol <sokol@insa-toulouse.fr>
Diff between Deriv versions 3.5.4 dated 2015-06-09 and 3.5.6 dated 2015-09-24
DESCRIPTION | 8 - MD5 | 18 +-- NAMESPACE | 5 NEWS | 16 ++- R/Deriv.R | 10 + R/Simplify.R | 214 +++++++++++++++++++++++++---------------- man/Deriv-package.Rd | 4 man/Simplify.Rd | 16 +++ tests/testthat/test_Deriv.R | 10 + tests/testthat/test_Simplify.R | 11 ++ 10 files changed, 211 insertions(+), 101 deletions(-)
Title: Tools for Cycling Data Analysis
Description: A suite of functions for analysing cycling data.
Author: Jordan Mackie [aut, cre]
Maintainer: Jordan Mackie <jmackie@protonmail.com>
Diff between cycleRtools versions 1.0.0 dated 2015-09-22 and 1.0.1 dated 2015-09-24
DESCRIPTION | 8 +++++--- MD5 | 20 ++++++++++---------- R/CP_model_inv.R | 2 +- R/Wbal.R | 2 +- R/read.R | 25 +++++++++++++++++-------- R/read_fit.R | 6 +++--- R/rollmean_smth.R | 3 ++- man/CP_model_inv.Rd | 2 +- man/Wbal.Rd | 2 +- man/read.Rd | 31 ++++++++++++++++++++----------- man/rollmean_smth.Rd | 2 ++ 11 files changed, 63 insertions(+), 40 deletions(-)
Title: Compute the Median Ranking(s) According to the Kemeny's
Axiomatic Approach
Description: Compute the median ranking according the Kemeny's axiomatic approach. Rankings can or cannot contain ties, rankings can be both complete or incomplete.
Author: Antonio D'Ambrosio <antdambr@unina.it>, Sonia Amodio <sonia.amodio@unina.it>
Maintainer: Antonio D'Ambrosio <antdambr@unina.it>
Diff between ConsRank versions 1.0.0 dated 2015-09-08 and 1.0.1 dated 2015-09-24
DESCRIPTION | 6 +++--- MD5 | 6 +++--- data/USAranks.rda |binary man/ConsRank-package.Rd | 2 +- 4 files changed, 7 insertions(+), 7 deletions(-)
Title: Reading ASD Binary Files in R
Description: A simple driver that reads spectroscopy data created using ASD
instruments such as the FieldSpec in R. The spectra can be extracted
from the ASD file as raw (DN), white reference, radiance, or reflectance.
Additionally, the metadata information contained in the ASD file header can
also be accessed.
Author: Pierre Roudier [aut, cre]
Maintainer: Pierre Roudier <roudierp@landcareresearch.co.nz>
Diff between asdreader versions 0.1-0 dated 2015-09-24 and 0.1-1 dated 2015-09-24
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/asdreader.r | 8 +++++--- R/get-metadata.r | 52 ++++++++++++++++++++++++++-------------------------- R/get-spectrum.r | 12 ++++++------ README.md | 5 ++++- man/asdreader.Rd | 13 ++++++------- man/get_metadata.Rd | 2 +- 8 files changed, 59 insertions(+), 55 deletions(-)
Title: Nonparametric Hypothesis Tests of Isotropy and Symmetry
Description: Implements nonparametric hypothesis tests to check isotropy and symmetry properties for two-dimensional spatial data.
Author: Zachary Weller [aut, cre]
Maintainer: Zachary Weller <wellerz@stat.colostate.edu>
Diff between spTest versions 0.2.1 dated 2015-09-17 and 0.2.2 dated 2015-09-24
DESCRIPTION | 8 MD5 | 66 - NAMESPACE | 2 R/Data_Description.R | 2 R/GuanTestGrid.R | 30 R/GuanTestUnif.R | 44 R/LuTest.R | 16 R/MaityTest.R | 36 R/coords_aniso.R | 10 inst/doc/spTest-vig.R | 11 inst/doc/spTest-vig.pdf |binary inst/doc/spTest-vig.rnw | 70 - man/GuanTestGrid.Rd | 34 man/GuanTestUnif.Rd | 42 man/LuTest.Rd | 16 man/MaityTest.Rd | 36 man/WRFG.Rd | 2 man/coords.aniso.Rd | 10 vignettes/figures/fig-dirsemi1-eps-converted-to.pdf |binary vignettes/figures/fig-dsvar2-eps-converted-to.pdf |binary vignettes/figures/fig-elev-eps-converted-to.pdf |binary vignettes/figures/fig-grid-eps-converted-to.pdf |binary vignettes/figures/fig-heatmap1-eps-converted-to.pdf |binary vignettes/figures/fig-heatmap1.eps | 1035 ++++++++++---------- vignettes/figures/fig-iso2-eps-converted-to.pdf |binary vignettes/figures/fig-iso2.eps | 8 vignettes/figures/fig-narccap-eps-converted-to.pdf |binary vignettes/figures/fig-narccap2-eps-converted-to.pdf |binary vignettes/figures/fig-precipdv-eps-converted-to.pdf |binary vignettes/figures/fig-rain-eps-converted-to.pdf |binary vignettes/figures/fig-rain1-eps-converted-to.pdf |binary vignettes/figures/fig-rain2-eps-converted-to.pdf |binary vignettes/spTest-vig.rnw | 70 - vignettes/spTestReferences.bib | 2 34 files changed, 779 insertions(+), 771 deletions(-)
Title: Robust Covariance Matrix Estimators
Description: Model-robust standard error estimators for cross-sectional, time series, and longitudinal data.
Author: Thomas Lumley [aut],
Achim Zeileis [aut, cre]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between sandwich versions 2.3-3 dated 2015-03-26 and 2.3-4 dated 2015-09-24
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- NEWS | 11 +++++++++++ R/vcovHAC.R | 3 +++ R/vcovHC.R | 5 ++++- build/vignette.rds |binary data/Investment.rda |binary data/PublicSchools.rda |binary inst/doc/sandwich-OOP.pdf |binary inst/doc/sandwich.pdf |binary 10 files changed, 32 insertions(+), 15 deletions(-)
Title: 'Rcpp' Integration for the 'Eigen' Templated Linear Algebra
Library
Description: R and 'Eigen' integration using 'Rcpp'.
'Eigen' is a C++ template library for linear algebra: matrices,
vectors, numerical solvers and related algorithms. It supports dense
and sparse matrices on integer, floating point and complex numbers,
decompositions of such matrices, and solutions of linear systems. Its
performance on many algorithms is comparable with some of the best
implementations based on 'Lapack' and level-3 'BLAS'.
The 'RcppEigen' package includes the header files from the 'Eigen' C++
template library (currently version 3.2.5). Thus users do not need to
install 'Eigen' itself in order to use 'RcppEigen'.
Since version 3.1.1, 'Eigen' is licensed under the Mozilla Public License
(version 2); earlier version were licensed under the GNU LGPL version 3 or
later. 'RcppEigen' (the 'Rcpp' bindings/bridge to 'Eigen') is licensed under
the GNU GPL version 2 or later, as is the rest of 'Rcpp'.
Author: Douglas Bates, Dirk Eddelbuettel and Romain Francois;
the authors of Eigen for the included version of Eigen
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppEigen versions 0.3.2.5.0 dated 2015-07-14 and 0.3.2.5.1 dated 2015-09-24
ChangeLog | 24 +++++ DESCRIPTION | 10 +- MD5 | 32 +++---- NAMESPACE | 3 R/RcppEigen.package.skeleton.R | 10 +- R/RcppExports.R |only R/fastLm.R | 6 - README.md | 4 build/vignette.rds |binary inst/NEWS.Rd | 8 + inst/doc/RcppEigen-Introduction.pdf |binary inst/include/Eigen/src/SparseCore/CompressedStorage.h | 6 - inst/unitTests/runit.fastLm.R | 14 +-- man/fastLm.Rd | 10 -- src/RcppEigen.cpp | 43 +++------ src/RcppExports.cpp |only src/fastLm.cpp | 80 +++++++++--------- src/fastLm.h | 4 18 files changed, 140 insertions(+), 114 deletions(-)
Title: Tree Boosting for Multivariate Outcomes
Description: Fits a multivariate model of decision trees for multiple,
continuous outcome variables. A model for each outcome variable is fit separately, selecting
predictors that explain that explain covariance in multiple outcomes.
Package is built on top of 'gbm'.
Author: Patrick Miller [aut, cre]
Maintainer: Patrick Miller <patrick.mil10@gmail.com>
Diff between mvtboost versions 0.2.1 dated 2015-07-18 and 0.3 dated 2015-09-24
mvtboost-0.2.1/mvtboost/man/cluster.covex.Rd |only mvtboost-0.2.1/mvtboost/man/heat.covex.Rd |only mvtboost-0.2.1/mvtboost/man/uncomp.mvtb.Rd |only mvtboost-0.3/mvtboost/DESCRIPTION | 8 mvtboost-0.3/mvtboost/MD5 | 77 +++-- mvtboost-0.3/mvtboost/NAMESPACE | 8 mvtboost-0.3/mvtboost/R/mvtb_nonlin_test.R | 23 - mvtboost-0.3/mvtboost/R/mvtb_plots.R | 119 +++++--- mvtboost-0.3/mvtboost/R/mvtb_summary.R | 111 +++++-- mvtboost-0.3/mvtboost/R/mvtboost.R | 196 +++++++++----- mvtboost-0.3/mvtboost/README.md | 13 mvtboost-0.3/mvtboost/build/partial.rdb |binary mvtboost-0.3/mvtboost/build/vignette.rds |binary mvtboost-0.3/mvtboost/data |only mvtboost-0.3/mvtboost/inst/doc/mvtboost_vignette.R | 6 mvtboost-0.3/mvtboost/inst/doc/mvtboost_vignette.Rmd | 31 +- mvtboost-0.3/mvtboost/inst/doc/mvtboost_vignette.html | 64 ++-- mvtboost-0.3/mvtboost/inst/doc/mvtboost_wellbeing.R |only mvtboost-0.3/mvtboost/inst/doc/mvtboost_wellbeing.Rmd |only mvtboost-0.3/mvtboost/inst/doc/mvtboost_wellbeing.html |only mvtboost-0.3/mvtboost/man/addalpha.Rd |only mvtboost-0.3/mvtboost/man/colorRampPaletteAlpha.Rd |only mvtboost-0.3/mvtboost/man/gbm.ri.Rd | 6 mvtboost-0.3/mvtboost/man/mvtb.Rd | 112 +++++--- mvtboost-0.3/mvtboost/man/mvtb.cluster.Rd |only mvtboost-0.3/mvtboost/man/mvtb.heat.Rd |only mvtboost-0.3/mvtboost/man/mvtb.nonlin.Rd | 8 mvtboost-0.3/mvtboost/man/mvtb.perspec.Rd | 20 - mvtboost-0.3/mvtboost/man/mvtb.ri.Rd | 14 - mvtboost-0.3/mvtboost/man/mvtb.uncomp.Rd |only mvtboost-0.3/mvtboost/man/mvtboost-package.Rd | 18 - mvtboost-0.3/mvtboost/man/plot.mvtb.Rd | 9 mvtboost-0.3/mvtboost/man/predict.mvtb.Rd | 10 mvtboost-0.3/mvtboost/man/summary.mvtb.Rd | 9 mvtboost-0.3/mvtboost/man/wellbeing.Rd |only mvtboost-0.3/mvtboost/tests/testthat/Rplots.pdf |binary mvtboost-0.3/mvtboost/tests/testthat/test_covex.R |only mvtboost-0.3/mvtboost/tests/testthat/test_cv.R | 8 mvtboost-0.3/mvtboost/tests/testthat/test_intx.R | 6 mvtboost-0.3/mvtboost/tests/testthat/test_mvloss_shrink.R | 22 - mvtboost-0.3/mvtboost/tests/testthat/test_params.R | 40 ++ mvtboost-0.3/mvtboost/tests/testthat/test_plot.R | 7 mvtboost-0.3/mvtboost/tests/testthat/test_predict.R | 10 mvtboost-0.3/mvtboost/tests/testthat/test_summary.R | 27 + mvtboost-0.3/mvtboost/vignettes/mvtboost_vignette.Rmd | 31 +- mvtboost-0.3/mvtboost/vignettes/mvtboost_wellbeing.Rmd |only mvtboost-0.3/mvtboost/vignettes/wb_cv5.Rdata |only mvtboost-0.3/mvtboost/vignettes/wb_nonlin.Rdata |only 48 files changed, 658 insertions(+), 355 deletions(-)
Title: Model Based Clustering, Classification and Discriminant Analysis
Using the Mixture of Generalized Hyperbolic Distributions
Description: Carries out model-based clustering, classification and discriminant analysis using five different models. The models are all based on the generalized hyperbolic distribution.The first model 'MGHD' is the classical mixture of generalized hyperbolic distributions. The 'MGHFA' is the mixture of generalized hyperbolic factor analyzers for high dimensional data sets. The 'MSGHD', mixture of multiple scaled generalized hyperbolic distributions. The 'cMSGHD' is a 'MSGHD' with convex contour plots. The 'MCGHD', mixture of coalesced generalized hyperbolic distributions is a new more flexible model.
Author: Cristina Tortora, Ryan P. Browne, Brian C. Franczak, and Paul D. McNicholas.
Maintainer: Cristina Tortora <ctortora@math.mcmaster.ca>
Diff between MixGHD versions 1.7 dated 2015-06-25 and 1.8 dated 2015-09-24
MixGHD-1.7/MixGHD/R/Selection.R |only MixGHD-1.7/MixGHD/man/Selection.Rd |only MixGHD-1.8/MixGHD/DESCRIPTION | 12 MixGHD-1.8/MixGHD/MD5 | 38 MixGHD-1.8/MixGHD/NAMESPACE | 3 MixGHD-1.8/MixGHD/R/DA.R | 12 MixGHD-1.8/MixGHD/R/GHD.R | 2124 ++++++++++++++++++++---------------- MixGHD-1.8/MixGHD/R/MCGHD.R | 79 + MixGHD-1.8/MixGHD/R/MGHD.R | 77 + MixGHD-1.8/MixGHD/R/MGHFA.R | 4 MixGHD-1.8/MixGHD/R/MSGHD.R | 81 + MixGHD-1.8/MixGHD/R/cMSGHD.R | 84 + MixGHD-1.8/MixGHD/R/usedSelection.R | 20 MixGHD-1.8/MixGHD/man/ARI.Rd | 6 MixGHD-1.8/MixGHD/man/DA.Rd | 23 MixGHD-1.8/MixGHD/man/MCGHD.Rd | 12 MixGHD-1.8/MixGHD/man/MGHD.Rd | 12 MixGHD-1.8/MixGHD/man/MGHFA.Rd | 4 MixGHD-1.8/MixGHD/man/MSGHD.Rd | 12 MixGHD-1.8/MixGHD/man/banknote.Rd | 2 MixGHD-1.8/MixGHD/man/cMSGHD.Rd | 14 21 files changed, 1628 insertions(+), 991 deletions(-)
Title: Spatio-Temporal Analysis and Mapping of Meteorological
Observations
Description: Spatio-temporal geostatistical mapping of meteorological data. Global spatio-temporal models calculated using publicly available data are stored in package.
Author: Milan Kilibarda, Aleksandar Sekulic, Tomislav Hengl, Edzer Pebesma, Benedikt Graeler
Maintainer: Milan Kilibarda <kili@grf.bg.ac.rs>
Diff between meteo versions 0.1-4 dated 2015-06-23 and 0.1-5 dated 2015-09-24
DESCRIPTION | 11 ++++++----- MD5 | 8 ++++---- NAMESPACE | 4 ++++ R/pred.strk.R | 13 +++++++------ R/tgeom2STFDF.R | 2 +- 5 files changed, 22 insertions(+), 16 deletions(-)
Title: Joint Analysis of Genotype and Group-Specific Variability Using
a Novel Score Test Approach to Map Expression Quantitative
Trait Loci (eQTL)
Description: Implements a novel score test that measures 1) the overall shift in the gene expression due to genotype (additive genetic effect), and 2) group-specific changes in gene expression due to genotype (interaction effect) in a mixed-effects model framework.
Author: Chaitanya R. Acharya and Andrew S. Allen
Maintainer: Chaitanya Acharya <c.acharya@duke.edu>
Diff between JAGUAR versions 2.0 dated 2015-03-02 and 3.0.0 dated 2015-09-24
JAGUAR-2.0/JAGUAR/data/example.data.rda |only JAGUAR-2.0/JAGUAR/man/ProcessJaguarResults.Rd |only JAGUAR-2.0/JAGUAR/man/RowMin.Rd |only JAGUAR-2.0/JAGUAR/man/RowSums.Rd |only JAGUAR-2.0/JAGUAR/man/SliceGeneData.Rd |only JAGUAR-2.0/JAGUAR/man/calcThreshold.Rd |only JAGUAR-2.0/JAGUAR/man/example.data.Rd |only JAGUAR-2.0/JAGUAR/man/gamma_test.Rd |only JAGUAR-2.0/JAGUAR/man/getMinP.Rd |only JAGUAR-2.0/JAGUAR/man/jag_param.Rd |only JAGUAR-2.0/JAGUAR/man/jaguar.Rd |only JAGUAR-2.0/JAGUAR/man/jaguarSIM.Rd |only JAGUAR-2.0/JAGUAR/man/lin.Rd |only JAGUAR-2.0/JAGUAR/man/plotqtl.Rd |only JAGUAR-2.0/JAGUAR/man/scoreTest.Rd |only JAGUAR-2.0/JAGUAR/man/snpOUT.Rd |only JAGUAR-3.0.0/JAGUAR/DESCRIPTION | 15 JAGUAR-3.0.0/JAGUAR/MD5 | 48 - JAGUAR-3.0.0/JAGUAR/NAMESPACE | 7 JAGUAR-3.0.0/JAGUAR/R/JAGUAR.R | 629 +++++++++++++++----------- JAGUAR-3.0.0/JAGUAR/R/RcppExports.R | 32 - JAGUAR-3.0.0/JAGUAR/README.md | 3 JAGUAR-3.0.0/JAGUAR/data/jaguar_example.rda |only JAGUAR-3.0.0/JAGUAR/man/GENEapply.Rd | 3 JAGUAR-3.0.0/JAGUAR/man/JAGUAR-package.Rd | 22 JAGUAR-3.0.0/JAGUAR/man/cis_eqtl.Rd |only JAGUAR-3.0.0/JAGUAR/man/jagSIM.Rd |only JAGUAR-3.0.0/JAGUAR/man/jag_fun.Rd |only JAGUAR-3.0.0/JAGUAR/man/jaguar_cis.Rd |only JAGUAR-3.0.0/JAGUAR/man/jaguar_example.Rd |only JAGUAR-3.0.0/JAGUAR/man/jaguar_gwa.Rd |only JAGUAR-3.0.0/JAGUAR/man/jaguar_plotqtl.Rd |only JAGUAR-3.0.0/JAGUAR/man/jaguar_process.Rd |only JAGUAR-3.0.0/JAGUAR/man/jaguar_sim.Rd |only JAGUAR-3.0.0/JAGUAR/man/jaguar_slice.Rd |only JAGUAR-3.0.0/JAGUAR/man/rowsumscpp.Rd |only JAGUAR-3.0.0/JAGUAR/man/vcSIM.Rd |only JAGUAR-3.0.0/JAGUAR/src/Makevars.win |only JAGUAR-3.0.0/JAGUAR/src/RcppExports.cpp | 228 +++------ JAGUAR-3.0.0/JAGUAR/src/jaguar.cpp | 473 ++++++++++++------- 40 files changed, 834 insertions(+), 626 deletions(-)
Title: High-Dimensional Kernel Density Estimation and Geometry
Operations
Description: Estimates the shape and volume of high-dimensional datasets and performs set operations: intersection / overlap, union, unique components, inclusion test, and hole detection. Uses stochastic geometry approach to high-dimensional kernel density estimation. Builds n-dimensional convex hulls (polytopes). Can measure the n-dimensional ecological hypervolume and perform species distribution modeling.
Author: Benjamin Blonder
Maintainer: Benjamin Blonder <bblonder@gmail.com>
Diff between hypervolume versions 1.3.0 dated 2015-06-03 and 1.4 dated 2015-09-24
hypervolume-1.3.0/hypervolume/data/finch.txt.gz |only hypervolume-1.3.0/hypervolume/man/finch.Rd |only hypervolume-1.4/hypervolume/DESCRIPTION | 8 hypervolume-1.4/hypervolume/MD5 | 26 +- hypervolume-1.4/hypervolume/NAMESPACE | 5 hypervolume-1.4/hypervolume/R/hypervolume_plot.R | 8 hypervolume-1.4/hypervolume/R/hypervolume_prune.R | 11 - hypervolume-1.4/hypervolume/data/morphSnodgrassHeller.txt.gz |only hypervolume-1.4/hypervolume/demo/00Index | 4 hypervolume-1.4/hypervolume/demo/finch.R | 38 ++-- hypervolume-1.4/hypervolume/demo/holes_finch.R | 101 ++++++----- hypervolume-1.4/hypervolume/man/hypervolume_holes.Rd | 2 hypervolume-1.4/hypervolume/man/hypervolume_prune.Rd | 7 hypervolume-1.4/hypervolume/man/morphSnodgrassHeller.Rd |only hypervolume-1.4/hypervolume/man/plot.Hypervolume.Rd | 11 - hypervolume-1.4/hypervolume/src/RcppExports.cpp | 82 +++----- 16 files changed, 166 insertions(+), 137 deletions(-)
Title: Robust Estimation in the Presence of Cellwise and Casewise
Contamination and Missing Data
Description: Robust Estimation of Multivariate Location and Scatter in the
Presence of Cellwise and Casewise Contamination and Missing Data.
Author: Andy Leung, Mike Danilov, Victor Yohai, Ruben Zamar
Maintainer: Andy Leung <andy.leung@stat.ubc.ca>
Diff between GSE versions 3.2.1 dated 2015-07-15 and 3.2.2 dated 2015-09-24
ChangeLog | 5 +++++ DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/GSE.R | 12 +++++++++--- R/emve.R | 17 ++++++++++++++--- man/emve.Rd | 7 ++++--- man/geochem.Rd | 2 ++ 7 files changed, 44 insertions(+), 19 deletions(-)
Title: Platform for EDGAR Filling Management
Description: EDGAR is the Electronic Data Gathering, Analysis, and Retrieval system which performs automated collection, validation, indexing, acceptance, and forwarding of submissions by companies and others who are required by law to file forms with the U.S. Securities and Exchange Commission (SEC). This package downloads EDGAR quarterly master index, daily master index, filings from SEC.org site and do sentiment analysis of 10-K statements.
Author: Gunratan Lonare <lonare.gunratan@gmail.com>, Bharat Patil <bharatspatil@gmail.com>
Maintainer: Gunratan Lonare <lonare.gunratan@gmail.com>
Diff between edgar versions 1.0.1 dated 2015-08-27 and 1.0.2 dated 2015-09-24
edgar-1.0.1/edgar/R/download_fillings.R |only edgar-1.0.1/edgar/R/download_master.R |only edgar-1.0.1/edgar/man/DownloadFillings.Rd |only edgar-1.0.1/edgar/man/DownloadMaster.Rd |only edgar-1.0.2/edgar/DESCRIPTION | 14 edgar-1.0.2/edgar/MD5 | 46 - edgar-1.0.2/edgar/NAMESPACE | 5 edgar-1.0.2/edgar/R/downlaod_master_index.R |only edgar-1.0.2/edgar/R/download_filings.R |only edgar-1.0.2/edgar/R/get_wordfrquency.R | 17 edgar-1.0.2/edgar/R/negative_wordcloud.R | 22 edgar-1.0.2/edgar/R/negative_words_histogram.R |only edgar-1.0.2/edgar/R/polarity_histogram.R |only edgar-1.0.2/edgar/R/positive_wordcloud.R | 16 edgar-1.0.2/edgar/R/positive_words_histogram.R |only edgar-1.0.2/edgar/R/runEDGAR_shiny.R | 17 edgar-1.0.2/edgar/inst/shiny-edgar/edgarapp/edgar_shiny_functions.R | 266 ++++----- edgar-1.0.2/edgar/inst/shiny-edgar/edgarapp/server.R | 268 +++++----- edgar-1.0.2/edgar/inst/shiny-edgar/edgarapp/ui.R | 92 ++- edgar-1.0.2/edgar/inst/shiny-edgar/edgarapp/www/edgarimg.jpg |binary edgar-1.0.2/edgar/man/DownloadMasterIndex.Rd |only edgar-1.0.2/edgar/man/Downloadfilings.Rd |only edgar-1.0.2/edgar/man/GetWordfrquency.Rd | 54 +- edgar-1.0.2/edgar/man/NegWorsdHist.Rd |only edgar-1.0.2/edgar/man/NegativeWordcloud.Rd | 90 +-- edgar-1.0.2/edgar/man/PolarityHist.Rd |only edgar-1.0.2/edgar/man/PosWorsdHist.Rd |only edgar-1.0.2/edgar/man/PositiveWordcloud.Rd | 90 +-- edgar-1.0.2/edgar/man/RunEdgarShiny.Rd | 52 - edgar-1.0.2/edgar/man/negwords.Rd | 4 edgar-1.0.2/edgar/man/poswords.Rd | 4 31 files changed, 566 insertions(+), 491 deletions(-)
Title: Temporal Exponential Random Graph Models by Bootstrapped
Pseudolikelihood
Description: Temporal Exponential Random Graph Models (TERGM) estimated by maximum pseudolikelihood with bootstrapped confidence intervals or Markov Chain Monte Carlo maximum likelihood. Goodness of fit assessment for ERGMs, TERGMs, and SAOMs. Micro-level interpretation of ERGMs and TERGMs.
Author: Philip Leifeld [aut, cre],
Skyler J. Cranmer [ctb],
Bruce A. Desmarais [ctb]
Maintainer: Philip Leifeld <philip.leifeld@eawag.ch>
Diff between btergm versions 1.5.2 dated 2015-08-05 and 1.5.9 dated 2015-09-24
btergm-1.5.2/btergm/R/preprocess.R |only btergm-1.5.2/btergm/man/adjust.Rd |only btergm-1.5.2/btergm/man/handleMissings.Rd |only btergm-1.5.2/btergm/man/preprocess.Rd |only btergm-1.5.9/btergm/DESCRIPTION | 13 btergm-1.5.9/btergm/MD5 | 17 btergm-1.5.9/btergm/NAMESPACE | 3 btergm-1.5.9/btergm/R/btergm.R | 543 ------------------------------ btergm-1.5.9/btergm/R/gof.R | 80 +++- btergm-1.5.9/btergm/R/mtergm.R |only btergm-1.5.9/btergm/R/tergmprepare.R |only btergm-1.5.9/btergm/R/timecov.R |only btergm-1.5.9/btergm/man/plot.btergmgof.Rd | 7 13 files changed, 77 insertions(+), 586 deletions(-)
Title: Parameter Space Exploration with Latin Hypercubes
Description: Functions for creating Latin Hypercubes with
prescribed correlations and performing parameter space exploration.
Also implements the PLUE method.
Based on the package sensitivity, by Gilles Pujol,
Bertrand Iooss & Alexandre Janon.
Author: Andre Chalom, Paulo Inacio Knegt Lopez de Prado
Maintainer: Andre Chalom <andrechalom@gmail.com>
Diff between pse versions 0.4.2 dated 2015-07-07 and 0.4.3 dated 2015-09-24
DESCRIPTION | 10 ++++++---- MD5 | 26 +++++++++++++------------- NEWS | 5 +++++ README.md | 10 ++++++++-- build/vignette.rds |binary inst/doc/multiple.pdf |binary inst/doc/pse_tutorial.R | 6 +++--- inst/doc/pse_tutorial.Rnw | 15 +++++++++++---- inst/doc/pse_tutorial.pdf |binary man/LHS.Rd | 9 +++++++-- man/LHScorcorr.Rd | 17 ++++++++++------- man/PLUE.Rd | 6 +++++- man/sbma.Rd | 3 ++- vignettes/pse_tutorial.Rnw | 15 +++++++++++---- 14 files changed, 81 insertions(+), 41 deletions(-)
Title: Intermittent Time Series Forecasting
Description: Functions for analysing and forecasting intermittent demand/slow moving items time series.
Author: Nikolaos Kourentzes and Fotios Petropoulos
Maintainer: Nikolaos Kourentzes <n.kourentzes@lancaster.ac.uk>
Diff between tsintermittent versions 1.7 dated 2015-09-17 and 1.8 dated 2015-09-24
ChangeLog | 6 ++++++ DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- R/crost.R | 3 +++ R/crost.decomp.R | 7 +++++++ R/crost.ma.R | 4 ++++ R/data.frc.R | 44 ++++++++++++++++++++++++++++++++++++++++---- R/idclass.R | 2 +- R/imapa.R | 10 ++++++++-- R/sexsm.R | 4 ++++ R/tsb.R | 4 ++++ man/data.frc.Rd | 10 +++++++--- 12 files changed, 99 insertions(+), 25 deletions(-)
More information about tsintermittent at CRAN
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