Wed, 30 Sep 2015

Package spam updated to version 1.2-1 with previous version 1.0-1 dated 2014-09-09

Title: SPArse Matrix
Description: Set of functions for sparse matrix algebra. Differences with SparseM/Matrix are: (1) we only support (essentially) one sparse matrix format, (2) based on transparent and simple structure(s), (3) tailored for MCMC calculations within GMRF. (4) S3 and S4 like-"compatible" ... and it is fast.
Author: Reinhard Furrer [aut, cre], Florian Gerber [ctb]
Maintainer: Reinhard Furrer <reinhard.furrer@math.uzh.ch>

Diff between spam versions 1.0-1 dated 2014-09-09 and 1.2-1 dated 2015-09-30

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Package simPop updated to version 0.2.15 with previous version 0.2.13 dated 2015-09-21

Title: Simulation of Synthetic Populations for Survey Data Considering Auxiliary Information
Description: Tools and methods to simulate populations for surveys based on auxiliary data. The tools include model-based methods, calibration and combinatorial optimization algorithms. The package was developed with support of the International Household Survey Network, DFID Trust Fund TF011722.
Author: Bernhard Meindl, Matthias Templ, Andreas Alfons, Alexander Kowarik, and with contributions from Mathieu Ribatet
Maintainer: Matthias Templ<matthias.templ@gmail.com>

Diff between simPop versions 0.2.13 dated 2015-09-21 and 0.2.15 dated 2015-09-30

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Package PowerTOST updated to version 1.3-01 with previous version 1.2-09 dated 2015-08-26

Title: Power and Sample Size Based on Two One-Sided t-Tests (TOST) for (Bio)Equivalence Studies
Description: Contains functions to calculate power and sample size for various study designs used for bioequivalence studies. See function known.designs() for study designs covered. Moreover the package contains functions for power and sample size based on 'expected' power in case of uncertain (estimated) variability. ----- Added are functions for the power and sample size for the ratio of two means with normally distributed data on the original scale (based on Fieller's confidence ('fiducial') interval). ----- Contains further functions for power and sample size calculations based on non-inferiority t-test. This is not a TOST procedure but eventually useful if the question of 'non-superiority' must be evaluated. The power and sample size calculations based on non-inferiority test may also performed via 'expected' power in case of uncertain (estimated) variability. ----- Contains functions power.scABEL() and sampleN.scABEL() to calculate power and sample size for the BE decision via scaled (widened) BE acceptance limits (EMA recommended) based on simulations. Contains further functions power.RSABE() and sampleN.RSABE() to calculate power and sample size for the BE decision via reference scaled ABE criterion according to the FDA procedure based on simulations. Contains further functions power.NTIDFDA() and sampleN.NTIDFDA() to calculate power and sample size for the BE decision via the FDA procedure for NTID's based on simulations. Contains further functions power.HVNTID() and sampleN.HVNTID() to calculate power and sample size for the BE decision via the FDA procedure for highly variable NTID's (see FDA Dabigatran / rivaroxaban guidances) ----- Contains functions for power analysis of a sample size plan for ABE (pa.ABE()), scaled ABE (pa.scABE()) and scaled ABE for NTID's (pa.NTIDFDA()) analysing power if deviating from assumptions of the plan. ----- Contains further functions for power calculations / sample size estimation for dose proportionality studies using the Power model.
Author: Detlew Labes [aut, cre], Helmut Schuetz [aut], Benjamin Lang [ctb]
Maintainer: Detlew Labes <DetlewLabes@gmx.de>

Diff between PowerTOST versions 1.2-09 dated 2015-08-26 and 1.3-01 dated 2015-09-30

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Package infuser updated to version 0.2.1 with previous version 0.2 dated 2015-05-26

Title: A Very Basic Templating Engine
Description: Replace parameters in strings and/or text files with specified values.
Author: Bart Smeets
Maintainer: Bart Smeets <bartsmeets86@gmail.com>

Diff between infuser versions 0.2 dated 2015-05-26 and 0.2.1 dated 2015-09-30

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Package fail updated to version 1.3 with previous version 1.2 dated 2013-09-19

Title: File Abstraction Interface Layer (FAIL)
Description: More comfortable interface to work with R data or source files in a key-value fashion.
Author: Michel Lang <michellang@gmail.com>
Maintainer: Michel Lang <michellang@gmail.com>

Diff between fail versions 1.2 dated 2013-09-19 and 1.3 dated 2015-09-30

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Package docopulae updated to version 0.3.1 with previous version 0.3.0 dated 2015-09-12

Title: Optimal Designs for Copula Models
Description: A direct approach to optimal designs for copula models based on the Fisher information. Provides flexible functions for building joint PDFs, evaluating the Fisher information and finding optimal designs. It includes an extensible solution to summation and integration called 'nint', functions for transforming, plotting and comparing designs, as well as a set of tools for common low-level tasks.
Author: Andreas Rappold [aut, cre]
Maintainer: Andreas Rappold <arappold@gmx.at>

Diff between docopulae versions 0.3.0 dated 2015-09-12 and 0.3.1 dated 2015-09-30

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Package changepoint updated to version 2.1.1 with previous version 2.0.1 dated 2015-07-27

Title: Changepoint Analysis
Description: Implements various mainstream and specialised changepoint methods for finding single and multiple changepoints within data. Many popular non-parametric and frequentist methods are included. The cpt.mean(), cpt.var(), cpt.meanvar() functions should be your first point of call.
Author: Rebecca Killick [aut, cre], Kaylea Haynes [aut], Idris Eckley [aut], Paul Fearnhead [ctb], Jamie Lee [ctr]
Maintainer: Rebecca Killick <r.killick@lancs.ac.uk>

Diff between changepoint versions 2.0.1 dated 2015-07-27 and 2.1.1 dated 2015-09-30

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Package BDgraph updated to version 2.23 with previous version 2.22 dated 2015-08-31

Title: Bayesian Graph Selection Based on Birth-Death MCMC Approach
Description: Provides statistical tools for Bayesian structure learning in undirected graphical models with either continuous or discrete variables. The main target is to uncover complicated patterns in multivariate data wherein either continuous or discrete variables.
Author: Abdolreza Mohammadi and Ernst Wit
Maintainer: Abdolreza Mohammadi <a.mohammadi@rug.nl>

Diff between BDgraph versions 2.22 dated 2015-08-31 and 2.23 dated 2015-09-30

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Package BAT updated to version 1.4.0 with previous version 1.3.1 dated 2015-07-08

Title: Biodiversity Assessment Tools
Description: Includes algorithms to assess alpha and beta diversity in all their dimensions (taxon, phylogenetic and functional diversity), whether communities are completely sampled or not. It allows performing a number of analyses based on either species identities or phylogenetic/functional trees depicting species relationships.
Author: Pedro Cardoso, Francois Rigal, Jose Carlos Carvalho
Maintainer: Pedro Cardoso <pedro.cardoso@helsinki.fi>

Diff between BAT versions 1.3.1 dated 2015-07-08 and 1.4.0 dated 2015-09-30

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Package selectiveInference updated to version 1.1.1 with previous version 1.1.0 dated 2015-09-20

Title: Tools for Selective Inference
Description: New tools for inference after selection, for use with forward stepwise regression, least angle regression, the lasso, and the many means problem.
Author: Ryan Tibshirani, Rob Tibshirani, Jonathan Taylor, Joshua Loftus, Stephen Reid
Maintainer: Rob Tibshirani <tibs@stanford.edu>

Diff between selectiveInference versions 1.1.0 dated 2015-09-20 and 1.1.1 dated 2015-09-30

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Package pnea updated to version 1.1.1 with previous version 1.1.0 dated 2015-09-09

Title: Parametric Network Enrichment Analysis
Description: Collection of functions for Parametric Network Enrichment Analysis.
Author: Mirko Signorelli, Veronica Vinciotti and Ernst C. Wit
Maintainer: Mirko Signorelli <m.signorelli@rug.nl>

Diff between pnea versions 1.1.0 dated 2015-09-09 and 1.1.1 dated 2015-09-30

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New package osrm with initial version 1.0
Package: osrm
Type: Package
Title: Interface Between R and the OpenStreetMap-Based Routing Service OSRM
Version: 1.0
Date: 2015-09-22
Authors@R: c(person("Timothée", "Giraud", email = "timothee.giraud@ums-riate.fr", role = c("cre","aut")))
Description: An interface between R and the OSRM API. OSRM is a routing service based on OpenStreetMap data. See <http://project-osrm.org/> for more information. A public API exists but one can run its own instance. This package allows to compute distance (travel time and kilometric distance) between points and travel time matrices.
License: GPL-3
LazyData: TRUE
Imports: jsonlite, RCurl, XML, reshape2, utils
Depends: R (>= 2.10)
URL: https://github.com/rCarto/osrm
BugReports: https://github.com/rCarto/osrm/issues
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2015-09-30 08:00:54 UTC; tg
Author: Timothée Giraud [cre, aut]
Maintainer: Timothée Giraud <timothee.giraud@ums-riate.fr>
Repository: CRAN
Date/Publication: 2015-09-30 11:40:00

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Package frailtySurv updated to version 1.2.2 with previous version 1.2.1 dated 2015-09-28

Title: General Semiparametric Shared Frailty Model
Description: Simulates and fits semiparametric shared frailty models under a wide range of frailty distributions using a consistent and asymptotically-normal estimator. Currently supports: gamma, power variance function, log-normal, and inverse Gaussian frailty models.
Author: John V. Monaco [aut, cre], Malka Gorfine [aut], Li Hsu [aut]
Maintainer: John V. Monaco <vincent@vmonaco.com>

Diff between frailtySurv versions 1.2.1 dated 2015-09-28 and 1.2.2 dated 2015-09-30

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New package FIACH with initial version 0.1.0
Package: FIACH
Type: Package
Title: Retrospective Noise Control for fMRI
Version: 0.1.0
Date: 2015-09-17
Author: Tim Tierney
Maintainer: Tim Tierney <fiachmri@gmail.com>
Repository: CRAN
Description: Useful functions for fMRI preprocessing.
License: GPL-2
Depends: R (>= 3.2.0)
Imports: Rcpp (>= 0.11.4), RNiftyReg (>= 2.0.0),tcltk, tkrplot, utils, stats, graphics, grDevices
LinkingTo: Rcpp, RcppArmadillo
NeedsCompilation: yes
Packaged: 2015-09-29 22:23:04 UTC; Nerevar
Date/Publication: 2015-09-30 07:15:58

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Package wbsts updated to version 0.3 with previous version 0.1 dated 2015-08-23

Title: Multiple Change-Point Detection for Nonstationary Time Series
Description: Implements detection for the number and locations of the change-points in a time series using the Wild Binary Segmentation and the Locally Stationary Wavelet model.
Author: Karolos Korkas and Piotr Fryzlewicz
Maintainer: Karolos Korkas <kkorkas@yahoo.co.uk>

Diff between wbsts versions 0.1 dated 2015-08-23 and 0.3 dated 2015-09-30

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Package randomLCA updated to version 1.0-3 with previous version 1.0-2 dated 2015-01-09

Title: Random Effects Latent Class Analysis
Description: Fits standard and random effects latent class models. The single level random effects model is described in Qu et al (doi: 10.2307/2533043) and the two level random effects model in Beath and Heller (doi: 10.1177/1471082X0800900302). Exampels are given for their use in diagnostic testing.
Author: Ken Beath <ken.beath@mq.edu.au>
Maintainer: Ken Beath <ken.beath@mq.edu.au>

Diff between randomLCA versions 1.0-2 dated 2015-01-09 and 1.0-3 dated 2015-09-30

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 63 files changed, 1096 insertions(+), 597 deletions(-)

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