Title: Genetic Data Manipulation (Quality Control, GRM and LD
Computations, PCA), Linear Mixed Models (AIREML Algorithm),
Association Testing
Description: Manipulation of genetic data (SNPs), computation of Genetic Relationship Matrix, Linkage Disequilibrium, etc. Efficient algorithms for Linear Mixed Model (AIREML, diagonalisation trick).
Author: Hervé Perdry & Claire Dandine-Roulland
Maintainer: Hervé Perdry <herve.perdry@u-psud.fr>
Diff between gaston versions 1.0 dated 2015-10-01 and 1.1 dated 2015-10-02
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ inst/doc/gaston.pdf |binary src/diago.h | 2 +- src/diago_full.h | 2 +- src/diago_full_nocovar.h | 2 +- src/diago_nocovar.h | 2 +- 7 files changed, 13 insertions(+), 13 deletions(-)
Title: Paralellised Versions of Constraint Based Causal Discovery
Algorithms
Description: Parallelise constraint based causality discovery and causal inference methods. The parallelised algorithms in the package will generate the same results as that of the pcalg package but will be much more efficient.
Author: Thuc Duy Le, Tao Hoang, Shu Hu, and Liang Zhang
Maintainer: Thuc Duy Le <Thuc.Le@unisa.edu.au>
Diff between ParallelPC versions 1.0 dated 2015-10-01 and 1.1 dated 2015-10-02
DESCRIPTION | 6 ++-- MD5 | 4 +-- R/ParallelPC.R | 71 ++++++++++++++++++++++++++++++++++++++++++++------------- 3 files changed, 60 insertions(+), 21 deletions(-)
Title: Spherical K-Function
Description: Spherical K-function for point-pattern analysis on the sphere.
Author: Scott Robeson, Ao Li, Chunfeng Huang
Maintainer: Ao Li<liao@umail.iu.edu>
Diff between SphericalK versions 1.1 dated 2015-02-12 and 1.2 dated 2015-10-02
SphericalK-1.1/SphericalK/man/SphericalK-package.Rd |only SphericalK-1.2/SphericalK/DESCRIPTION | 8 - SphericalK-1.2/SphericalK/MD5 | 9 -- SphericalK-1.2/SphericalK/NAMESPACE | 1 SphericalK-1.2/SphericalK/R/SphericalK.R | 88 +++++++++----------- SphericalK-1.2/SphericalK/man/sphere_grid.Rd | 8 - 6 files changed, 55 insertions(+), 59 deletions(-)
Title: An Interface to the NOAA Operational Model Archive and
Distribution System
Description: An interface to the National Oceanic and Atmospheric Administration's Operational Model Archive and Distribution System (NOMADS) that allows R users to quickly and efficiently download global and regional weather model data for processing. rNOMADS currently supports a variety of models ranging from global weather data to an altitude of 40 km, to high resolution regional weather models, to wave and sea ice models. It can also retrieve archived NOMADS models. rNOMADS can retrieve binary data in grib format as well as import ascii data directly into R by interfacing with the GrADS-DODS system.
Author: Daniel C. Bowman [aut, cre]
Maintainer: Daniel C. Bowman <daniel.bowman@unc.edu>
Diff between rNOMADS versions 2.1.4 dated 2015-06-03 and 2.1.5 dated 2015-10-02
DESCRIPTION | 15 ++++++++------- MD5 | 17 +++++++++-------- NAMESPACE | 5 ++++- NEWS | 3 +++ R/GetArchiveGrib.R | 25 +++++++++---------------- R/GetDODS.R | 14 ++++---------- R/GetRealTimeGrib.R | 6 ++---- R/Models.R | 13 +++++-------- R/RNomadsTools.R | 25 ++++++++++++++++++++++++- man/LinkExtractor.Rd |only 10 files changed, 68 insertions(+), 55 deletions(-)
Title: Multidimensional Numerical Integration
Description: It is a wrapper around the Cuba-1.6 library by Thomas Hahn available from the URL http://www.feynarts.de/cuba/. Implement four general-purpose multidimensional integration algorithms: Vegas, Suave, Divonne and Cuhre.
Author: The Cuba library has been written by Thomas Hahn (http://wwwth.mppmu.mpg.de/members/hahn); Interface to R was written by Annie Bouvier and Kiên Kiêu
Maintainer: Annie Bouvier <Annie.Bouvier@jouy.inra.fr>
Diff between R2Cuba versions 1.0-11 dated 2013-04-15 and 1.1-0 dated 2015-10-02
R2Cuba-1.0-11/R2Cuba/ChangeLog |only R2Cuba-1.0-11/R2Cuba/tests/essaiArgu.R |only R2Cuba-1.0-11/R2Cuba/tests/essaiArgu.Rout.save |only R2Cuba-1.0-11/R2Cuba/tests/kk.R |only R2Cuba-1.0-11/R2Cuba/tests/kk.Rout.save |only R2Cuba-1.0-11/R2Cuba/tests/vegas.Rout.save.sv |only R2Cuba-1.1-0/R2Cuba/DESCRIPTION | 20 ++--- R2Cuba-1.1-0/R2Cuba/MD5 | 94 ++++++++++++------------ R2Cuba-1.1-0/R2Cuba/NAMESPACE | 5 - R2Cuba-1.1-0/R2Cuba/NEWS |only R2Cuba-1.1-0/R2Cuba/R/commoncuba.R | 33 ++++++++ R2Cuba-1.1-0/R2Cuba/R/cuhre.R | 38 ++++++++- R2Cuba-1.1-0/R2Cuba/R/divonne.R | 28 +++++++ R2Cuba-1.1-0/R2Cuba/R/suave.R | 26 ++++++ R2Cuba-1.1-0/R2Cuba/R/vegas.R | 28 +++++++ R2Cuba-1.1-0/R2Cuba/build |only R2Cuba-1.1-0/R2Cuba/demo/00Index | 2 R2Cuba-1.1-0/R2Cuba/man/R2Cuba-package.Rd | 24 +----- R2Cuba-1.1-0/R2Cuba/man/cuhre.Rd | 6 - R2Cuba-1.1-0/R2Cuba/man/divonne.Rd | 2 R2Cuba-1.1-0/R2Cuba/man/suave.Rd | 4 - R2Cuba-1.1-0/R2Cuba/man/vegas.Rd | 2 R2Cuba-1.1-0/R2Cuba/src/common_stddecl.h | 60 +++++++-------- R2Cuba-1.1-0/R2Cuba/src/cuhre_Cuhre.c | 96 ++++++++----------------- R2Cuba-1.1-0/R2Cuba/src/cuhre_DoSample.c | 59 ++++++++++++++- R2Cuba-1.1-0/R2Cuba/src/cuhre_Integrate.c | 87 ++++++++++++---------- R2Cuba-1.1-0/R2Cuba/src/cuhre_Rule.c | 23 ++++- R2Cuba-1.1-0/R2Cuba/src/cuhre_Rule.h | 20 ++--- R2Cuba-1.1-0/R2Cuba/src/cuhre_common.c | 2 R2Cuba-1.1-0/R2Cuba/src/cuhre_decl.h | 5 - R2Cuba-1.1-0/R2Cuba/src/cuhre_util.h | 8 +- R2Cuba-1.1-0/R2Cuba/src/divonne_Divonne.c | 10 +- R2Cuba-1.1-0/R2Cuba/src/divonne_Explore.c | 3 R2Cuba-1.1-0/R2Cuba/src/divonne_FindMinimum.c | 1 R2Cuba-1.1-0/R2Cuba/src/divonne_Integrate.c | 3 R2Cuba-1.1-0/R2Cuba/src/divonne_Rule.h | 9 +- R2Cuba-1.1-0/R2Cuba/src/divonne_Sample.c | 2 R2Cuba-1.1-0/R2Cuba/src/divonne_Split.c | 3 R2Cuba-1.1-0/R2Cuba/src/suave_Fluct.h | 1 R2Cuba-1.1-0/R2Cuba/src/suave_Integrate.c | 3 R2Cuba-1.1-0/R2Cuba/src/suave_Sample.c | 3 R2Cuba-1.1-0/R2Cuba/src/suave_Suave.c | 3 R2Cuba-1.1-0/R2Cuba/src/suave_util.h | 3 R2Cuba-1.1-0/R2Cuba/src/vegas_Grid.c | 3 R2Cuba-1.1-0/R2Cuba/src/vegas_Vegas.c | 3 R2Cuba-1.1-0/R2Cuba/tests/Gtilde2.R |only R2Cuba-1.1-0/R2Cuba/tests/Gtilde2.Rout.save |only R2Cuba-1.1-0/R2Cuba/tests/MWE.R |only R2Cuba-1.1-0/R2Cuba/tests/MWE.Rout.save |only R2Cuba-1.1-0/R2Cuba/tests/cuhre.R | 8 -- R2Cuba-1.1-0/R2Cuba/tests/cuhre.Rout.save | 17 +--- R2Cuba-1.1-0/R2Cuba/tests/divonne.Rout.save | 7 - R2Cuba-1.1-0/R2Cuba/tests/peak.Rout.save | 7 - R2Cuba-1.1-0/R2Cuba/tests/suave.Rout.save | 7 - 54 files changed, 464 insertions(+), 304 deletions(-)
Title: D3 JavaScript Network Graphs from R
Description: Creates 'D3' 'JavaScript' network, tree, dendrogram, and Sankey
graphs from 'R'.
Author: Christopher Gandrud [aut, cre],
J.J. Allaire [aut],
Kenton Russell [aut],
B.W. Lewis [ctb],
Kevin Kuo [ctb],
Charles Sese [ctb],
Peter Ellis [ctb],
Jonathan Owen [ctb]
Maintainer: Christopher Gandrud <christopher.gandrud@gmail.com>
Diff between networkD3 versions 0.2.1 dated 2015-08-25 and 0.2.4 dated 2015-10-02
networkD3-0.2.1/networkD3/man/JSONtoDF.Rd |only networkD3-0.2.4/networkD3/DESCRIPTION | 16 +- networkD3-0.2.4/networkD3/MD5 | 45 ++--- networkD3-0.2.4/networkD3/NAMESPACE | 4 networkD3-0.2.4/networkD3/NEWS | 33 ++++ networkD3-0.2.4/networkD3/R/dendroNetwork.R | 7 networkD3-0.2.4/networkD3/R/diagonalNetwork.R | 25 +-- networkD3-0.2.4/networkD3/R/forceNetwork.R | 19 +- networkD3-0.2.4/networkD3/R/radialNetwork.R | 25 +-- networkD3-0.2.4/networkD3/R/sankeyNetwork.R | 35 ++-- networkD3-0.2.4/networkD3/R/utils.R | 78 ++++----- networkD3-0.2.4/networkD3/README.md | 19 +- networkD3-0.2.4/networkD3/inst/examples/examples.R | 18 +- networkD3-0.2.4/networkD3/inst/examples/shiny/server.R | 20 +- networkD3-0.2.4/networkD3/inst/examples/shiny/ui.R | 2 networkD3-0.2.4/networkD3/inst/htmlwidgets/dendroNetwork.js | 2 networkD3-0.2.4/networkD3/inst/htmlwidgets/diagonalNetwork.js | 69 +++++++- networkD3-0.2.4/networkD3/inst/htmlwidgets/lib/sankey.js | 48 ++++-- networkD3-0.2.4/networkD3/inst/htmlwidgets/radialNetwork.js | 80 +++++++++- networkD3-0.2.4/networkD3/inst/htmlwidgets/sankeyNetwork.js | 14 + networkD3-0.2.4/networkD3/man/diagonalNetwork.Rd | 18 +- networkD3-0.2.4/networkD3/man/forceNetwork.Rd | 17 -- networkD3-0.2.4/networkD3/man/radialNetwork.Rd | 18 +- networkD3-0.2.4/networkD3/man/sankeyNetwork.Rd | 23 +- 24 files changed, 403 insertions(+), 232 deletions(-)
Title: Draw Geographical Maps
Description: Display of maps. Projection code and larger maps are in
separate packages ('mapproj' and 'mapdata').
Author: Original S code by Richard A. Becker and Allan R. Wilks.
R version by Ray Brownrigg.
Enhancements by Thomas P Minka and Alex Deckmyn.
Maintainer: Alex Deckmyn <alex.deckmyn@meteo.be>
Diff between maps versions 3.0.0-1 dated 2015-09-28 and 3.0.0-2 dated 2015-10-02
DESCRIPTION | 8 ++++---- MD5 | 9 +++++---- src/Makefile | 34 ++++++++++++++++------------------ src/Makefile.win | 20 +++++++++++++++----- src/legacy_convert.awk |only src/world.name | 2 +- 6 files changed, 41 insertions(+), 32 deletions(-)
More information about imputeMissings at CRAN
Permanent link
Title: Interface to Species Occurrence Data Sources
Description: A programmatic interface to many species occurrence data sources,
including 'GBIF', 'USGS's' 'BISON', 'iNaturalist', Berkeley 'Ecoinformatics'
Engine 'eBird', 'AntWeb', and `iDigBio`. Includes functionality for
retrieving species occurrence data, and combining that data.
Author: Scott Chamberlain [aut, cre],
Karthik Ram [aut],
Ted Hart [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between spocc versions 0.3.2 dated 2015-09-12 and 0.4.0 dated 2015-10-02
DESCRIPTION | 17 +- MD5 | 44 ++--- NAMESPACE | 7 R/as.vertnet.R |only R/inat.R | 148 +++++++---------- R/methods.r | 53 ++++-- R/occ.r | 108 +++++++++---- R/occ2df.R | 20 ++ R/plugins.r | 55 +++--- R/tbldf.R | 6 R/wkt_bbox.R | 20 ++ R/wkt_vis.r | 88 +++++++--- R/zzz.r | 9 + README.md | 126 ++++----------- inst/doc/spocc_vignette.Rmd | 343 +++++++++++++++++++---------------------- inst/doc/spocc_vignette.html | 346 +++++++++++++++++++----------------------- man/as.vertnet.Rd |only man/occ.Rd | 131 ++++++++++++++- man/spocc_objects.Rd | 9 + man/wkt_vis.Rd | 14 + tests/testthat/test-occ.R | 149 +++++++++++++++--- tests/testthat/test-occ2df.R |only tests/testthat/test-options.R | 5 tests/testthat/test-wkt_vis.R |only vignettes/spocc_vignette.Rmd | 343 +++++++++++++++++++---------------------- 25 files changed, 1156 insertions(+), 885 deletions(-)
Title: R Interface to EPP-Lab, a Java Program for Exploratory
Projection Pursuit
Description: An R Interface to EPP-lab v1.0. EPP-lab is a Java program for projection pursuit using genetic algorithms written by Alain Berro and S. Larabi Marie-Sainte and is included in the package.
Author: Daniel Fischer, Alain Berro, Klaus Nordhausen, Anne Ruiz-Gazen
Maintainer: Daniel Fischer <daniel.fischer@luke.fi>
Diff between REPPlab versions 0.9.1 dated 2015-02-05 and 0.9.2 dated 2015-10-02
DESCRIPTION | 13 +- MD5 | 69 +++++++------- NAMESPACE | 39 ++++---- R/EPPlabAgg.R |only R/REPPlab-package.R |only R/REPPlab.R | 131 +++++++++++++++++++++++++++ R/coef.epplab.R | 22 ++++ R/fitted.epplab.R | 31 ++++++ R/outlier.R | 56 +++++++++++ R/pairs.epplab.R | 23 ++++ R/plot.epplab.R | 49 ++++++++++ R/plot.epplabOutlier.R | 43 ++++++++- R/predict.epplab.R | 39 ++++++++ R/print.epplab.R | 22 ++++ R/print.epplabOutlier.R | 33 ++++++ R/screeplot.epplab.R | 35 +++++++ R/summary.epplab.R | 23 ++++ R/summary.epplabOutlier.R | 39 +++++++- R/whitenSVD.R | 96 ++++++++++++++------ inst/ChangeLog | 7 + man/EPPlab.Rd | 204 ++++++++++++++++++++++++------------------- man/EPPlabAgg.Rd |only man/EPPlabOutlier.Rd | 101 +++++++++------------ man/REPPlab-package.Rd | 67 ++++++-------- man/ReliabilityData.Rd | 47 ++++----- man/WhitenSVD.Rd | 117 ++++++++++++------------ man/coef.epplab.Rd | 37 +++---- man/fitted.epplab.Rd | 43 ++++----- man/pairs.epplab.Rd | 41 ++++---- man/plot.epplab.Rd | 70 ++++++++------ man/plot.epplabOutlier.Rd | 57 ++++++------ man/predict.epplab.Rd | 49 +++++----- man/print.epplab.Rd | 37 +++---- man/print.epplabOutlier.Rd | 39 ++++---- man/screeplot.epplab.Rd | 57 ++++++------ man/summary.epplab.Rd | 40 ++++---- man/summary.epplabOutlier.Rd | 42 ++++---- 37 files changed, 1221 insertions(+), 597 deletions(-)
Title: Fungible Coefficients and Monte Carlo Functions
Description: Functions for computing fungible coefficients and Monte Carlo data.
Author: Niels G. Waller <nwaller@umn.edu> and Jeff Jones <jeff.jones@kornferry.com>
Maintainer: Niels G. Waller <nwaller@umn.edu>
Diff between fungible versions 1.0 dated 2015-08-18 and 1.1 dated 2015-10-02
DESCRIPTION | 8 MD5 | 24 +- R/corSmooth.R | 22 +- R/fungible.R | 16 - R/fungibleR.R | 105 +++++++++--- R/seBeta.R | 136 ++++++++------- R/seBetaCor.R | 366 ++++++++++++++++++++++--------------------- inst/CITATION | 4 inst/doc/fungible-manual.pdf |binary man/corSmooth.Rd | 6 man/fungibleR.Rd | 5 man/seBeta.Rd | 101 ++++++----- man/seBetaCor.Rd | 95 +++++------ 13 files changed, 485 insertions(+), 403 deletions(-)
Title: Full Text of 'Scholarly' Articles Across Many Data Sources
Description: Provides a single interface to many sources of full text
'scholarly' data, including 'Biomed Central', Public Library of
Science, 'Pubmed Central', 'eLife', 'F1000Research', 'PeerJ',
'Pensoft', 'Hindawi', 'arXiv' 'preprints', and more. Functionality
included for searching for articles, downloading full or partial
text, downloading supplementary materials, converting to various
data formats used in and outside of R.
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between fulltext versions 0.1.0 dated 2015-08-06 and 0.1.4 dated 2015-10-02
fulltext-0.1.0/fulltext/tests/test-all.R |only fulltext-0.1.4/fulltext/DESCRIPTION | 19 - fulltext-0.1.4/fulltext/MD5 | 60 ++- fulltext-0.1.4/fulltext/NAMESPACE | 11 fulltext-0.1.4/fulltext/R/europe_pmc_utils.R |only fulltext-0.1.4/fulltext/R/extract_tools.R |only fulltext-0.1.4/fulltext/R/ft_extract.R | 15 fulltext-0.1.4/fulltext/R/ft_get.R | 75 ++-- fulltext-0.1.4/fulltext/R/ft_get_si.R |only fulltext-0.1.4/fulltext/R/ft_links.R |only fulltext-0.1.4/fulltext/R/fulltext-package.R | 4 fulltext-0.1.4/fulltext/R/pdfx.R | 16 fulltext-0.1.4/fulltext/R/plugins_get.R | 266 +++------------ fulltext-0.1.4/fulltext/R/plugins_get_old.R |only fulltext-0.1.4/fulltext/R/plugins_links.R |only fulltext-0.1.4/fulltext/R/plugins_search.R | 46 +- fulltext-0.1.4/fulltext/R/zzz.R | 21 + fulltext-0.1.4/fulltext/README.md | 131 +++++-- fulltext-0.1.4/fulltext/build/vignette.rds |binary fulltext-0.1.4/fulltext/inst/doc/fulltext_vignette.Rmd | 88 +++- fulltext-0.1.4/fulltext/inst/doc/fulltext_vignette.html | 92 +++-- fulltext-0.1.4/fulltext/inst/vign/formats.md | 4 fulltext-0.1.4/fulltext/inst/vign/fulltext_vignette.md | 88 +++- fulltext-0.1.4/fulltext/man/eupmc.Rd |only fulltext-0.1.4/fulltext/man/extract_tools.Rd |only fulltext-0.1.4/fulltext/man/ft_extract.Rd | 7 fulltext-0.1.4/fulltext/man/ft_get.Rd | 3 fulltext-0.1.4/fulltext/man/ft_get_si.Rd |only fulltext-0.1.4/fulltext/man/ft_links.Rd |only fulltext-0.1.4/fulltext/man/fulltext-package.Rd | 1 fulltext-0.1.4/fulltext/man/pdfx.Rd | 3 fulltext-0.1.4/fulltext/tests/longtests |only fulltext-0.1.4/fulltext/tests/testthat/test-ft_extract.R | 18 - fulltext-0.1.4/fulltext/tests/testthat/test-ft_get.R | 44 ++ fulltext-0.1.4/fulltext/tests/testthat/test-ft_get_si.r |only fulltext-0.1.4/fulltext/tests/testthat/test-ft_search.R | 30 + fulltext-0.1.4/fulltext/vignettes/fulltext_vignette.Rmd | 88 +++- 37 files changed, 651 insertions(+), 479 deletions(-)