Title: Graphing Nonlinear Relations Among Latent Variables from
Structural Equation Mixture Models
Description: Contains a graphical user interface to generate the
diagnostic plots proposed by Bauer (2005) and Pek & Chalmers (2015) to investigate
nonlinear bivariate relationships in latent regression models using
structural equation mixture models (SEMMs).
Author: Bethany Kok [ctb],
Jolynn Pek [ctb],
Sonya Sterba [ctb],
Dan Bauer [ctb],
Phil Chalmers [cre, ctb]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between plotSEMM versions 2.0 dated 2014-07-07 and 2.1 dated 2015-10-04
DESCRIPTION | 24 ++-- MD5 | 67 +++++++++-- NAMESPACE | 6 - R/plotSEMM-package.R | 35 +----- R/plotSEMM_GUI.R | 252 ++++++++++++++++++++++++-------------------- R/plotSEMM_ci.R | 58 +++++----- R/plotSEMM_contour.R | 5 R/plotSEMM_probability.R | 100 ++++++++--------- R/plotSEMM_setup.R | 118 ++++++++++---------- R/plotSEMM_setup2.R | 5 R/read.plotSEMM_wACOV.R | 2 inst |only man/plotSEMM.Rd | 28 +--- man/plotSEMM_GUI.Rd | 30 +++-- man/plotSEMM_contour.Rd | 8 + man/plotSEMM_probability.Rd | 11 + man/plotSEMM_setup.Rd | 5 17 files changed, 410 insertions(+), 344 deletions(-)
Title: Computerized Adaptive Testing with Multidimensional Item
Response Theory
Description: Provides tools to generate an HTML interface for creating adaptive
and non-adaptive educational and psychological tests using the shiny
package. Suitable for applying unidimensional and multidimensional
computerized adaptive tests using item response theory methodology and for
creating simple questionnaires forms to collect response data directly in R.
Author: Phil Chalmers [aut, cre, cph]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between mirtCAT versions 0.5 dated 2015-05-09 and 0.6 dated 2015-10-04
DESCRIPTION | 10 +++++----- MD5 | 24 ++++++++++++------------ NAMESPACE | 7 +++++++ NEWS | 5 +++++ R/ShinyGUIClass.R | 7 ++++--- R/mirtCAT-package.R | 1 + R/mirtCAT.R | 11 +++++++---- R/server.R | 2 +- R/zzz-methods.R | 18 +++++++++++++----- README.md | 5 +++++ build/vignette.rds |binary man/mirtCAT.Rd | 21 +++++++++++++++------ tests/GUI-tests/GUI-tests.R | 14 ++++++++++++-- 13 files changed, 87 insertions(+), 38 deletions(-)
Title: Analysis of Geostatistical Data using Bayes and Empirical Bayes
Methods
Description: Functions to fit geostatistical data. The data can be
continuous, binary or count data and the models implemented are
flexible. Conjugate priors are assumed on some parameters while
inference on the other parameters can be done through a full
Bayesian analysis of by empirical Bayes methods.
Author: Evangelos Evangelou <e.evangelou@maths.bath.ac.uk>, Vivekananda
Roy <vroy@iastate.edu>
Maintainer: Evangelos Evangelou <e.evangelou@maths.bath.ac.uk>
Diff between geoBayes versions 0.3.0 dated 2015-10-03 and 0.3.1 dated 2015-10-04
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 5 ++++- src/Makevars | 13 +++++++------ 4 files changed, 18 insertions(+), 14 deletions(-)
Title: Wrappers for the Geospatial Data Abstraction Library (GDAL)
Utilities
Description: Wrappers for the Geospatial Data Abstraction Library (GDAL)
Utilities.
Author: Jonathan Asher Greenberg and Matteo Mattiuzzi
Maintainer: Jonathan Asher Greenberg <gdalUtils@estarcion.net>
Diff between gdalUtils versions 0.3.1 dated 2014-01-30 and 2.0.1.5 dated 2015-10-04
DESCRIPTION | 13 - MD5 | 94 +++++--- NAMESPACE | 17 + R/align_rasters.R |only R/gdal_contour.R |only R/gdal_grid.R |only R/gdal_rasterize.R | 13 - R/gdal_setInstallation.R | 34 ++- R/gdal_translate.R | 42 ++- R/gdaladdo.R | 15 - R/gdalbuildvrt.R | 16 - R/gdaldem.R | 7 R/gdalinfo.R | 70 ++++-- R/gdallocationinfo.R |only R/gdalmanage.R |only R/gdalsrsinfo.R | 6 R/gdaltindex.R |only R/gdaltransform.R |only R/gdalwarp.R | 53 +++- R/get_subdatasets.R | 3 R/mosaic_rasters.R | 73 ++++++ R/nearblack.R |only R/ogr2ogr.R | 145 +++++++++---- R/ogrinfo.R | 22 +- R/ogrlineref.R |only R/ogrtindex.R |only man/align_rasters.Rd |only man/batch_gdal_translate.Rd | 48 +--- man/gdal_chooseInstallation.Rd | 22 -- man/gdal_cmd_builder.Rd | 63 ++--- man/gdal_contour.Rd |only man/gdal_grid.Rd |only man/gdal_rasterize.Rd | 209 ++++++------------- man/gdal_setInstallation.Rd | 73 ++---- man/gdal_translate.Rd | 252 ++++++++--------------- man/gdaladdo.Rd | 69 ++---- man/gdalbuildvrt.Rd | 204 +++++------------- man/gdaldem.Rd | 183 +++++----------- man/gdalinfo.Rd | 192 +++++------------ man/gdallocationinfo.Rd |only man/gdalmanage.Rd |only man/gdalsrsinfo.Rd | 72 ++---- man/gdaltindex.Rd |only man/gdaltransform.Rd |only man/gdalwarp.Rd | 327 +++++++++++------------------- man/get_subdatasets.Rd | 38 +-- man/mosaic_rasters.Rd | 39 +-- man/nearblack.Rd |only man/ogr2ogr.Rd | 412 ++++++++++++++------------------------ man/ogrinfo.Rd | 155 +++++--------- man/ogrlineref.Rd |only man/ogrtindex.Rd |only man/qm.Rd | 7 man/remove_file_extension.Rd | 7 man/tahoe_highrez_training.Rd | 2 man/tahoe_lidar_bareearth.tif.Rd | 5 man/tahoe_lidar_highesthit.tif.Rd | 5 man/test_modis.hdf.Rd | 2 58 files changed, 1301 insertions(+), 1708 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad
Sanderson) that aims towards a good balance between speed and ease of use. Integer,
floating point and complex numbers are supported, as well as a subset of
trigonometric and statistics functions. Various matrix decompositions are
provided through optional integration with LAPACK and ATLAS libraries.
The 'RcppArmadillo' package includes the header files from the templated
'Armadillo' library. Thus users do not need to install 'Armadillo' itself in
order to use 'RcppArmadillo'. 'Armadillo' is licensed under the MPL 2.0, while
'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the
GNU GPL version 2 or later, as is the rest of 'Rcpp'.
Author: Dirk Eddelbuettel, Romain Francois and Doug Bates
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 0.5.600.2.0 dated 2015-09-19 and 0.6.100.0.0 dated 2015-10-04
ChangeLog | 16 DESCRIPTION | 8 MD5 | 144 +- inst/NEWS.Rd | 22 inst/doc/RcppArmadillo-intro.pdf |binary inst/doc/RcppArmadillo-unitTests.pdf |binary inst/include/armadillo | 6 inst/include/armadillo_bits/Col_bones.hpp | 2 inst/include/armadillo_bits/Cube_bones.hpp | 33 inst/include/armadillo_bits/Cube_meat.hpp | 216 ++-- inst/include/armadillo_bits/Glue_bones.hpp | 15 inst/include/armadillo_bits/Mat_bones.hpp | 27 inst/include/armadillo_bits/Mat_meat.hpp | 205 +--- inst/include/armadillo_bits/Op_bones.hpp | 20 inst/include/armadillo_bits/Row_bones.hpp | 2 inst/include/armadillo_bits/SpMat_bones.hpp | 201 +-- inst/include/armadillo_bits/arma_forward.hpp |only inst/include/armadillo_bits/arma_ostream_meat.hpp | 4 inst/include/armadillo_bits/arma_version.hpp | 8 inst/include/armadillo_bits/arrayops_bones.hpp | 31 inst/include/armadillo_bits/arrayops_meat.hpp | 198 --- inst/include/armadillo_bits/atlas_bones.hpp | 10 inst/include/armadillo_bits/atlas_wrapper.hpp | 58 + inst/include/armadillo_bits/auxlib_bones.hpp | 20 inst/include/armadillo_bits/auxlib_meat.hpp | 110 +- inst/include/armadillo_bits/blas_bones.hpp | 28 inst/include/armadillo_bits/blas_wrapper.hpp | 68 + inst/include/armadillo_bits/compiler_setup.hpp | 4 inst/include/armadillo_bits/field_bones.hpp | 12 inst/include/armadillo_bits/field_meat.hpp | 1 inst/include/armadillo_bits/fn_conv.hpp | 15 inst/include/armadillo_bits/fn_cumprod.hpp | 6 inst/include/armadillo_bits/fn_cumsum.hpp | 6 inst/include/armadillo_bits/fn_diff.hpp | 6 inst/include/armadillo_bits/fn_hist.hpp | 62 - inst/include/armadillo_bits/fn_histc.hpp | 30 inst/include/armadillo_bits/fn_join.hpp | 111 +- inst/include/armadillo_bits/fn_norm.hpp | 861 ++--------------- inst/include/armadillo_bits/fn_reshape.hpp | 2 inst/include/armadillo_bits/fn_schur.hpp |only inst/include/armadillo_bits/fn_shuffle.hpp | 56 - inst/include/armadillo_bits/fn_sort.hpp | 54 - inst/include/armadillo_bits/glue_conv_bones.hpp | 6 inst/include/armadillo_bits/glue_conv_meat.hpp | 69 - inst/include/armadillo_bits/glue_hist_bones.hpp | 20 inst/include/armadillo_bits/glue_hist_meat.hpp | 291 ++--- inst/include/armadillo_bits/glue_histc_bones.hpp | 17 inst/include/armadillo_bits/glue_histc_meat.hpp | 193 +-- inst/include/armadillo_bits/glue_join_bones.hpp | 28 inst/include/armadillo_bits/glue_join_meat.hpp | 147 +- inst/include/armadillo_bits/mtGlue_bones.hpp | 21 inst/include/armadillo_bits/mtOp_bones.hpp | 41 inst/include/armadillo_bits/mul_gemm.hpp | 6 inst/include/armadillo_bits/mul_gemv.hpp | 6 inst/include/armadillo_bits/mul_herk.hpp | 4 inst/include/armadillo_bits/mul_syrk.hpp | 4 inst/include/armadillo_bits/op_cumprod_bones.hpp | 4 inst/include/armadillo_bits/op_cumprod_meat.hpp | 21 inst/include/armadillo_bits/op_cumsum_bones.hpp | 4 inst/include/armadillo_bits/op_cumsum_meat.hpp | 21 inst/include/armadillo_bits/op_diff_bones.hpp | 4 inst/include/armadillo_bits/op_diff_meat.hpp | 25 inst/include/armadillo_bits/op_dot_meat.hpp | 4 inst/include/armadillo_bits/op_hist_bones.hpp | 7 inst/include/armadillo_bits/op_hist_meat.hpp | 60 - inst/include/armadillo_bits/op_norm_bones.hpp |only inst/include/armadillo_bits/op_norm_meat.hpp |only inst/include/armadillo_bits/op_prod_bones.hpp | 9 inst/include/armadillo_bits/op_prod_meat.hpp | 73 - inst/include/armadillo_bits/op_shuffle_bones.hpp | 15 inst/include/armadillo_bits/op_shuffle_meat.hpp | 52 - inst/include/armadillo_bits/op_sort_bones.hpp | 12 inst/include/armadillo_bits/op_sort_meat.hpp | 44 inst/include/armadillo_bits/subview_cube_each_meat.hpp | 176 ++- inst/include/armadillo_bits/subview_meat.hpp | 14 75 files changed, 1870 insertions(+), 2206 deletions(-)
Title: Manly Mixture Modeling and Model-Based Clustering
Description: The utility of this package includes finite mixture modeling and model-based clustering through Manly mixture models. It also provides capabilities for forward and backward model selection procedures.
Author: Xuwen Zhu [aut, cre],
Volodymyr Melnykov [aut],
Michael Hutt [ctb, cph] (NM optimization in c),
Stephen Moshier [ctb, cph] (eigen calculations in c),
Rouben Rostamian [ctb, cph] (memory allocation in c)
Maintainer: Xuwen Zhu <xzhu20@crimson.ua.edu>
Diff between ManlyMix versions 0.1.1 dated 2015-10-02 and 0.1.2 dated 2015-10-04
DESCRIPTION | 25 +++++++++++++++++-------- MD5 | 8 ++++---- NEWS | 4 ++++ man/ManlyMix-package.Rd | 48 ++++++++++++++++++++++++++++++------------------ src/crosen.c | 32 ++++++++++++++++++++++++++++---- 5 files changed, 83 insertions(+), 34 deletions(-)