Title: NHANES Data Retrieval
Description: Utility to retrieve data from the National Health and Nutrition Examination Survey (NHANES).
Author: Christopher Endres
Maintainer: Christopher Endres <cjendres1@gmail.com>
Diff between nhanesA versions 0.6.0 dated 2015-09-23 and 0.6.1 dated 2015-10-08
DESCRIPTION | 8 - INDEX | 1 MD5 | 27 ++--- NAMESPACE | 6 + R/nhanes.R | 204 ++++++++++++++++++++++++-------------- build/vignette.rds |binary inst/doc/Introducing_nhanesA.R | 9 - inst/doc/Introducing_nhanesA.Rmd | 22 ++-- inst/doc/Introducing_nhanesA.html | 47 ++++---- man/browseNHANES.Rd |only man/nhanes.Rd | 4 man/nhanesAttr.Rd | 2 man/nhanesTables.Rd | 10 + man/nhanesTranslate.Rd | 1 vignettes/Introducing_nhanesA.Rmd | 22 ++-- 15 files changed, 218 insertions(+), 145 deletions(-)
Title: Create Graph Diagrams and Flowcharts Using R
Description: Create graph diagrams and flowcharts using R.
Author: Knut Sveidqvist [aut, cph] (mermaid.js library in htmlwidgets/lib,
http://github.com/knsv/mermaid/),
Mike Bostock [aut, cph] (d3.js library in htmlwidgets/lib,
http://d3js.org),
Chris Pettitt [aut, cph] (dagre-d3.js library in htmlwidgets/lib,
http://github.com/cpettitt/dagre-d3),
Mike Daines [aut, cph] (viz.js library in htmlwidgets/lib,
http://github.com/mdaines/viz.js/),
Andrei Kashcha [aut, cph] (vivagraphjs library in htmlwidgets/lib,
https://github.com/anvaka/VivaGraphJS),
Richard Iannone [aut, cre] (R interface)
Maintainer: Richard Iannone <riannone@me.com>
Diff between DiagrammeR versions 0.7 dated 2015-06-11 and 0.8 dated 2015-10-08
DiagrammeR-0.7/DiagrammeR/R/edge_relationship.R |only DiagrammeR-0.7/DiagrammeR/build |only DiagrammeR-0.7/DiagrammeR/inst/doc |only DiagrammeR-0.7/DiagrammeR/man/edge_relationship.Rd |only DiagrammeR-0.7/DiagrammeR/vignettes |only DiagrammeR-0.8/DiagrammeR/DESCRIPTION | 61 DiagrammeR-0.8/DiagrammeR/LICENSE | 2 DiagrammeR-0.8/DiagrammeR/MD5 | 250 + DiagrammeR-0.8/DiagrammeR/NAMESPACE | 24 DiagrammeR-0.8/DiagrammeR/R/DiagrammeR.R | 46 DiagrammeR-0.8/DiagrammeR/R/add_edges.R | 217 + DiagrammeR-0.8/DiagrammeR/R/add_node.R | 295 +- DiagrammeR-0.8/DiagrammeR/R/add_to_series.R | 45 DiagrammeR-0.8/DiagrammeR/R/combine_edges.R | 15 DiagrammeR-0.8/DiagrammeR/R/combine_graphs.R |only DiagrammeR-0.8/DiagrammeR/R/combine_nodes.R | 11 DiagrammeR-0.8/DiagrammeR/R/country_graph.R |only DiagrammeR-0.8/DiagrammeR/R/create_edges.R | 13 DiagrammeR-0.8/DiagrammeR/R/create_graph.R | 863 +++--- DiagrammeR-0.8/DiagrammeR/R/create_nodes.R | 26 DiagrammeR-0.8/DiagrammeR/R/create_random_graph.R |only DiagrammeR-0.8/DiagrammeR/R/create_series.R | 24 DiagrammeR-0.8/DiagrammeR/R/create_subgraph.R | 19 DiagrammeR-0.8/DiagrammeR/R/delete_edge.R | 17 DiagrammeR-0.8/DiagrammeR/R/delete_node.R | 10 DiagrammeR-0.8/DiagrammeR/R/display_graph_object.R | 9 DiagrammeR-0.8/DiagrammeR/R/edge_count.R | 80 DiagrammeR-0.8/DiagrammeR/R/edge_info.R | 52 DiagrammeR-0.8/DiagrammeR/R/edge_present.R | 15 DiagrammeR-0.8/DiagrammeR/R/edge_rel.R |only DiagrammeR-0.8/DiagrammeR/R/get_edges.R | 18 DiagrammeR-0.8/DiagrammeR/R/get_nodes.R | 11 DiagrammeR-0.8/DiagrammeR/R/get_predecessors.R | 5 DiagrammeR-0.8/DiagrammeR/R/get_successors.R | 7 DiagrammeR-0.8/DiagrammeR/R/grViz.R | 69 DiagrammeR-0.8/DiagrammeR/R/graph_count.R | 25 DiagrammeR-0.8/DiagrammeR/R/graphviz_export.R | 39 DiagrammeR-0.8/DiagrammeR/R/import_graph.R |only DiagrammeR-0.8/DiagrammeR/R/is_graph_directed.R | 3 DiagrammeR-0.8/DiagrammeR/R/is_graph_empty.R | 4 DiagrammeR-0.8/DiagrammeR/R/mermaid.R | 4 DiagrammeR-0.8/DiagrammeR/R/node_count.R | 81 DiagrammeR-0.8/DiagrammeR/R/node_info.R | 20 DiagrammeR-0.8/DiagrammeR/R/node_present.R | 8 DiagrammeR-0.8/DiagrammeR/R/node_type.R | 18 DiagrammeR-0.8/DiagrammeR/R/remove_from_series.R | 31 DiagrammeR-0.8/DiagrammeR/R/render_graph.R | 251 - DiagrammeR-0.8/DiagrammeR/R/render_graph_from_series.R | 42 DiagrammeR-0.8/DiagrammeR/R/roll_palette.R | 41 DiagrammeR-0.8/DiagrammeR/R/scale_edges.R | 27 DiagrammeR-0.8/DiagrammeR/R/scale_nodes.R | 26 DiagrammeR-0.8/DiagrammeR/R/select_graph_from_series.R |only DiagrammeR-0.8/DiagrammeR/R/series_info.R | 6 DiagrammeR-0.8/DiagrammeR/R/spectools.R | 3 DiagrammeR-0.8/DiagrammeR/R/subset_series.R | 36 DiagrammeR-0.8/DiagrammeR/R/trigger_script.R | 6 DiagrammeR-0.8/DiagrammeR/R/visnetwork.R |only DiagrammeR-0.8/DiagrammeR/R/vivagraph.R |only DiagrammeR-0.8/DiagrammeR/R/x11_hex.R | 3 DiagrammeR-0.8/DiagrammeR/README.md | 36 DiagrammeR-0.8/DiagrammeR/inst/examples |only DiagrammeR-0.8/DiagrammeR/inst/htmlwidgets/lib/VivaGraphJS |only DiagrammeR-0.8/DiagrammeR/inst/htmlwidgets/lib/mermaid/dist/mermaid.css | 284 +- DiagrammeR-0.8/DiagrammeR/inst/htmlwidgets/lib/mermaid/dist/mermaid.slim.min.js | 23 DiagrammeR-0.8/DiagrammeR/inst/htmlwidgets/lib/viz/viz.js | 1337 ---------- DiagrammeR-0.8/DiagrammeR/inst/htmlwidgets/vivagraph.js |only DiagrammeR-0.8/DiagrammeR/inst/htmlwidgets/vivagraph.yaml |only DiagrammeR-0.8/DiagrammeR/man/DiagrammeR.Rd | 13 DiagrammeR-0.8/DiagrammeR/man/DiagrammeROutput.Rd | 6 DiagrammeR-0.8/DiagrammeR/man/add_edges.Rd | 40 DiagrammeR-0.8/DiagrammeR/man/add_node.Rd | 19 DiagrammeR-0.8/DiagrammeR/man/add_to_series.Rd | 27 DiagrammeR-0.8/DiagrammeR/man/combine_edges.Rd | 10 DiagrammeR-0.8/DiagrammeR/man/combine_graphs.Rd |only DiagrammeR-0.8/DiagrammeR/man/combine_nodes.Rd | 6 DiagrammeR-0.8/DiagrammeR/man/country_graph.Rd |only DiagrammeR-0.8/DiagrammeR/man/create_edges.Rd | 10 DiagrammeR-0.8/DiagrammeR/man/create_graph.Rd | 71 DiagrammeR-0.8/DiagrammeR/man/create_nodes.Rd | 8 DiagrammeR-0.8/DiagrammeR/man/create_random_graph.Rd |only DiagrammeR-0.8/DiagrammeR/man/create_series.Rd | 23 DiagrammeR-0.8/DiagrammeR/man/create_subgraph.Rd | 19 DiagrammeR-0.8/DiagrammeR/man/delete_edge.Rd | 7 DiagrammeR-0.8/DiagrammeR/man/display_graph_object.Rd | 9 DiagrammeR-0.8/DiagrammeR/man/edge_count.Rd | 18 DiagrammeR-0.8/DiagrammeR/man/edge_info.Rd | 10 DiagrammeR-0.8/DiagrammeR/man/edge_present.Rd | 9 DiagrammeR-0.8/DiagrammeR/man/edge_rel.Rd |only DiagrammeR-0.8/DiagrammeR/man/exportSVG.Rd | 11 DiagrammeR-0.8/DiagrammeR/man/get_edges.Rd | 14 DiagrammeR-0.8/DiagrammeR/man/get_nodes.Rd | 8 DiagrammeR-0.8/DiagrammeR/man/get_predecessors.Rd | 5 DiagrammeR-0.8/DiagrammeR/man/get_successors.Rd | 5 DiagrammeR-0.8/DiagrammeR/man/grViz.Rd | 17 DiagrammeR-0.8/DiagrammeR/man/grVizOutput.Rd | 10 DiagrammeR-0.8/DiagrammeR/man/graph_count.Rd | 25 DiagrammeR-0.8/DiagrammeR/man/import_graph.Rd |only DiagrammeR-0.8/DiagrammeR/man/is_graph_directed.Rd | 3 DiagrammeR-0.8/DiagrammeR/man/is_graph_empty.Rd | 3 DiagrammeR-0.8/DiagrammeR/man/mermaid.Rd | 4 DiagrammeR-0.8/DiagrammeR/man/node_count.Rd | 11 DiagrammeR-0.8/DiagrammeR/man/node_info.Rd | 20 DiagrammeR-0.8/DiagrammeR/man/node_present.Rd | 8 DiagrammeR-0.8/DiagrammeR/man/node_type.Rd | 18 DiagrammeR-0.8/DiagrammeR/man/remove_from_series.Rd | 31 DiagrammeR-0.8/DiagrammeR/man/renderDiagrammeR.Rd | 3 DiagrammeR-0.8/DiagrammeR/man/renderGrViz.Rd | 3 DiagrammeR-0.8/DiagrammeR/man/render_graph.Rd | 41 DiagrammeR-0.8/DiagrammeR/man/render_graph_from_series.Rd | 36 DiagrammeR-0.8/DiagrammeR/man/replace_in_spec.Rd | 3 DiagrammeR-0.8/DiagrammeR/man/roll_palette.Rd | 19 DiagrammeR-0.8/DiagrammeR/man/scale_edges.Rd | 24 DiagrammeR-0.8/DiagrammeR/man/scale_nodes.Rd | 23 DiagrammeR-0.8/DiagrammeR/man/select_graph_from_series.Rd |only DiagrammeR-0.8/DiagrammeR/man/series_info.Rd | 6 DiagrammeR-0.8/DiagrammeR/man/subset_series.Rd | 38 DiagrammeR-0.8/DiagrammeR/man/trigger_script.Rd | 6 DiagrammeR-0.8/DiagrammeR/man/visnetwork.Rd |only DiagrammeR-0.8/DiagrammeR/man/vivagraph.Rd |only DiagrammeR-0.8/DiagrammeR/man/x11_hex.Rd | 3 DiagrammeR-0.8/DiagrammeR/tests |only 121 files changed, 2277 insertions(+), 2984 deletions(-)
More information about SurvRegCensCov at CRAN
Permanent link
Title: Path Manipulation Utilities
Description: Utilities for paths, files and directories.
Author: Richard Cotton [aut, cre], Janko Thyson [ctb]
Maintainer: Richard Cotton <richierocks@gmail.com>
Diff between pathological versions 0.0-6 dated 2015-05-10 and 0.0-7 dated 2015-10-08
pathological-0.0-6/pathological/inst |only pathological-0.0-6/pathological/tests/run-all.R |only pathological-0.0-7/pathological/DESCRIPTION | 12 pathological-0.0-7/pathological/MD5 | 35 +- pathological-0.0-7/pathological/NAMESPACE | 99 +++--- pathological-0.0-7/pathological/NEWS | 7 pathological-0.0-7/pathological/R/paths.R | 247 +++++++++++++--- pathological-0.0-7/pathological/README.md | 3 pathological-0.0-7/pathological/man/choose_files.Rd |only pathological-0.0-7/pathological/man/r_profile.Rd | 23 + pathological-0.0-7/pathological/man/standardize_path.Rd | 7 pathological-0.0-7/pathological/tests/testthat |only pathological-0.0-7/pathological/tests/testthat.R |only 13 files changed, 310 insertions(+), 123 deletions(-)
Title: NeuroAnatomy Toolbox (nat) Extension for Handling Template
Brains
Description: Extends package nat (NeuroAnatomy Toolbox) by providing objects
and functions for handling template brains.
Author: James Manton and Gregory Jefferis
Maintainer: James Manton <ajd.manton@googlemail.com>
Diff between nat.templatebrains versions 0.6 dated 2015-07-01 and 0.6.1 dated 2015-10-08
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS | 4 ++++ R/reg_repos.R | 4 ++-- R/transformation.R | 2 +- README.md | 2 ++ man/add_reg_folders.Rd | 2 +- 7 files changed, 20 insertions(+), 14 deletions(-)
More information about nat.templatebrains at CRAN
Permanent link
Title: Fast Algorithms to Bootstrap Receiver Operating Characteristics
Curves
Description: Implements a very fast C++ algorithm to quickly bootstrap
receiver operating characteristics (ROC) curves and derived performance metrics, including the area under the
curve (AUC) as well as the true and false positive rate. The analysis of paired
receiver operating curves is supported as well, so that a comparison of two predictors is possible.
You can also plot the results and calculate confidence intervals.
Currently the calculation of 100000 bootstrap replicates for 500 observations
takes about one second.
Author: Erik Peter [aut, cre]
Maintainer: Erik Peter <jerikpeter@googlemail.com>
Diff between fbroc versions 0.2.1 dated 2015-06-07 and 0.3.0 dated 2015-10-08
fbroc-0.2.1/fbroc/man/conf.roc.Rd |only fbroc-0.2.1/fbroc/man/perf.roc.Rd |only fbroc-0.3.0/fbroc/DESCRIPTION | 13 + fbroc-0.3.0/fbroc/MD5 | 61 +++++---- fbroc-0.3.0/fbroc/NAMESPACE | 21 ++- fbroc-0.3.0/fbroc/R/RcppExports.R | 44 +++++- fbroc-0.3.0/fbroc/R/fbroc.R | 72 ++++++++-- fbroc-0.3.0/fbroc/R/fbroc.helper.functions.R |only fbroc-0.3.0/fbroc/R/fbroc.methods.R | 115 +++++++++++------ fbroc-0.3.0/fbroc/R/fbroc.paired.R |only fbroc-0.3.0/fbroc/R/fbroc.paired.methods.R |only fbroc-0.3.0/fbroc/R/fbroc.perf.R | 19 +- fbroc-0.3.0/fbroc/R/fbroc.roc.R | 76 +++++++---- fbroc-0.3.0/fbroc/R/perf.paired.roc.R |only fbroc-0.3.0/fbroc/README.md | 6 fbroc-0.3.0/fbroc/man/boot.paired.roc.Rd |only fbroc-0.3.0/fbroc/man/boot.roc.Rd | 1 fbroc-0.3.0/fbroc/man/conf.Rd |only fbroc-0.3.0/fbroc/man/conf.fbroc.paired.roc.Rd |only fbroc-0.3.0/fbroc/man/conf.fbroc.roc.Rd |only fbroc-0.3.0/fbroc/man/extract.roc.Rd |only fbroc-0.3.0/fbroc/man/fbroc.Rd | 42 ++++-- fbroc-0.3.0/fbroc/man/perf.Rd |only fbroc-0.3.0/fbroc/man/perf.fbroc.paired.roc.Rd |only fbroc-0.3.0/fbroc/man/perf.fbroc.roc.Rd |only fbroc-0.3.0/fbroc/man/plot.fbroc.conf.Rd |only fbroc-0.3.0/fbroc/man/plot.fbroc.conf.paired.Rd |only fbroc-0.3.0/fbroc/man/plot.fbroc.paired.roc.Rd |only fbroc-0.3.0/fbroc/man/plot.fbroc.perf.Rd | 12 - fbroc-0.3.0/fbroc/man/plot.fbroc.perf.paired.Rd |only fbroc-0.3.0/fbroc/man/plot.fbroc.roc.Rd | 12 + fbroc-0.3.0/fbroc/man/print.fbroc.perf.Rd | 2 fbroc-0.3.0/fbroc/man/print.fbroc.perf.paired.Rd |only fbroc-0.3.0/fbroc/src/RcppExports.cpp | 147 ++++++++++++++++++++-- fbroc-0.3.0/fbroc/src/interface.common.cpp | 16 ++ fbroc-0.3.0/fbroc/src/interface.common.h | 5 fbroc-0.3.0/fbroc/src/interface.paired.cpp | 151 +++++++++++++++++++++++ fbroc-0.3.0/fbroc/src/interface.single.cpp | 49 ++++--- fbroc-0.3.0/fbroc/src/performance.h | 3 fbroc-0.3.0/fbroc/src/roc.cpp | 133 +++++++++++++------- fbroc-0.3.0/fbroc/src/roc.h | 2 41 files changed, 766 insertions(+), 236 deletions(-)
Title: Fast, Low Memory-Footprint Digests of R Objects
Description: Provides an R interface to Bob Jenkin's streaming,
non-cryptographic 'SpookyHash' hash algorithm for use in digest-based
comparisons of R objects. 'fastdigest' plugs directly into R's internal
serialization machinery, allowing digests of all R objects the serialize()
function supports, including reference-style objects via custom hooks. Speed is
high and scales linearly by object size; memory usage is constant and
negligible.
Author: Gabriel Becker, Bob Jenkins (SpookyHash algorithm and C++ implementation)
Maintainer: Gabriel Becker <becker.gabriel@gene.com>
Diff between fastdigest versions 0.6-2 dated 2015-10-07 and 0.6-3 dated 2015-10-08
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS | 5 ++++- src/SpookyV2.cpp | 3 ++- 4 files changed, 12 insertions(+), 8 deletions(-)
Title: Dunn's Test of Multiple Comparisons Using Rank Sums
Description: Computes Dunn's test (1964) for stochastic dominance and reports the results among multiple pairwise comparisons after a Kruskal-Wallis test for stochastic dominance among k groups (Kruskal and Wallis, 1952). The interpretation of stochastic dominance requires an assumption that the CDF of one group does not cross the CDF of the other. 'dunn.test' makes k(k-1)/2 multiple pairwise comparisons based on Dunn's z-test-statistic approximations to the actual rank statistics. The null hypothesis for each pairwise comparison is that the probability of observing a randomly selected value from the first group that is larger than a randomly selected value from the second group equals one half; this null hypothesis corresponds to that of the Wilcoxon-Mann-Whitney rank-sum test. Like the rank-sum test, if the data can be assumed to be continuous, and the distributions are assumed identical except for a difference in location, Dunn's test may be understood as a test for median difference. 'dunn.test' accounts for tied ranks.
Author: Alexis Dinno <alexis.dinno@pdx.edu>
Maintainer: Alexis Dinno <alexis.dinno@pdx.edu>
Diff between dunn.test versions 1.3.0 dated 2015-09-24 and 1.3.1 dated 2015-10-08
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/dunn.test.R | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Tools for Survey Statistics in Educational Assessment
Description:
Contains tools for survey statistics (especially in educational
assessment) for datasets with replication designs (jackknife,
bootstrap, replicate weights). Descriptive statistics, linear
and logistic regression, path models for manifest variables
with measurement error correction and two-level hierarchical
regressions for weighted samples are included. Statistical
inference can be conducted for multiply imputed datasets and
nested multiply imputed datasets.
This package is developed by BIFIE (Federal Institute for
Educational Research, Innovation and Development of the Austrian
School System; Salzburg, Austria).
Author: BIFIE
Maintainer: Alexander Robitzsch <a.robitzsch@bifie.at>
Diff between BIFIEsurvey versions 1.4-0 dated 2015-09-08 and 1.5-0 dated 2015-10-08
DESCRIPTION | 11 +++++------ MD5 | 7 ++++--- inst/CITATION |only inst/NEWS | 12 +++++++++--- man/BIFIEsurvey-package.Rd | 4 ++-- 5 files changed, 20 insertions(+), 14 deletions(-)
Title: Variance Estimation for Sample Surveys by the Ultimate Cluster
Method
Description: Generation of domain variables, linearisation of several nonlinear population statistics (the ratio of two totals, weighted income percentile, relative median income ratio, at-risk-of-poverty rate, at-risk-of-poverty threshold, Gini coefficient, gender pay gap, the aggregate replacement ratio, the relative median income ratio, median income below at-risk-of-poverty gap, income quintile share ratio, relative median at-risk-of-poverty gap), computation of regression residuals in case of weight calibration, variance estimation of sample surveys by the ultimate cluster method (Hansen, Hurwitz and Madow, 1953), variance estimation for longitudinal, cross-sectional measures and measures of change for single and multistage stage cluster sampling designs (Berger, Y.G.). Several other precision measures are derived - standard error, the coefficient of variation, the margin of error, confidence interval, design effect.
Author: Juris Breidaks [aut, cre], Martins Liberts [aut], Santa Ivanova [aut]
Maintainer: Juris Breidaks <Juris.Breidaks@csb.gov.lv>
Diff between vardpoor versions 0.4.4 dated 2015-09-10 and 0.4.6 dated 2015-10-08
DESCRIPTION | 12 MD5 | 100 ++-- NAMESPACE | 1 R/incPercentile.R | 37 - R/linarpr.R | 43 -- R/linarpt.R | 40 - R/linarr.R | 65 +-- R/lingini.R | 41 - R/lingini2.R | 40 - R/lingpg.R | 50 +- R/linpoormed.R | 41 - R/linqsr.R | 39 - R/linrmir.R | 47 +- R/linrmpg.R | 45 -- R/residual_est.R | 2 R/var_srs.R | 10 R/vardchanges.R | 58 -- R/vardchangespoor.R | 84 +-- R/vardcros.R | 1030 +++++++++++++++++++++++------------------------- R/vardcrospoor.R | 80 +-- R/vardom.R | 89 +--- R/vardom_othstr.R | 94 +--- R/vardomh.R | 97 +--- R/variance_est.R | 52 -- R/variance_othstr.R | 80 +-- R/varpoord.R | 101 ++-- inst/CITATION | 4 inst/NEWS | 10 man/domain.Rd | 10 man/incPercentile.Rd | 12 man/linarpr.Rd | 20 man/linarpt.Rd | 14 man/linarr.Rd | 32 - man/lingini.Rd | 14 man/lingini2.Rd | 14 man/lingpg.Rd | 19 man/linpoormed.Rd | 16 man/linqsr.Rd | 14 man/linrmir.Rd | 24 - man/linrmpg.Rd | 26 - man/vardchanges.Rd | 21 man/vardchangespoor.Rd | 32 - man/vardcros.Rd | 20 man/vardcrospoor.Rd | 34 - man/vardom.Rd | 42 - man/vardom_othstr.Rd | 49 -- man/vardomh.Rd | 47 -- man/vardpoor-package.Rd | 6 man/variance_est.Rd | 61 -- man/variance_othstr.Rd | 19 man/varpoord.Rd | 58 +- 51 files changed, 1351 insertions(+), 1645 deletions(-)
Title: Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests
Description: Comprehensive open-source toolbox for analysing spatial data, mainly Spatial Point Patterns, including multitype/marked points and spatial covariates, in any two-dimensional spatial region. Also supports three-dimensional point patterns, space-time point patterns in any number of dimensions, and point patterns on a linear network.
Contains over 2000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference.
Data types include point patterns, line segment patterns, spatial windows, pixel images, tessellations, and linear networks.
Exploratory methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics, and kernel estimates of covariate effects. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Diggle-Cressie-Loosmore-Ford, Dao-Genton) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov) are also supported.
Parametric models can be fitted to point pattern data using the functions ppm, kppm, slrm, dppm similar to glm. Types of models include Poisson, Gibbs and Cox point processes, Neyman-Scott cluster processes, and determinantal point processes. Models may involve dependence on covariates, interpoint interaction, cluster formation and dependence on marks. Models are fitted by maximum likelihood, logistic regression, minimum contrast, and composite likelihood methods.
A model can be fitted to a list of point patterns (replicated point pattern data) using the function mppm. The model can include random effects and fixed effects depending on the experimental design, in addition to all the features listed above.
Fitted point process models can be simulated, automatically. Formal hypothesis tests of a fitted model are supported (likelihood ratio test, analysis of deviance, Monte Carlo tests) along with basic tools for model selection (stepwise, AIC). Tools for validating the fitted model include simulation envelopes, residuals, residual plots and Q-Q plots, leverage and influence diagnostics, partial residuals, and added variable plots.
Author: Adrian Baddeley <Adrian.Baddeley@uwa.edu.au>,
Rolf Turner <r.turner@auckland.ac.nz>
and Ege Rubak <rubak@math.aau.dk>,
with substantial contributions of code by
Kasper Klitgaard Berthelsen;
Ute Hahn;
Abdollah Jalilian;
Marie-Colette van Lieshout;
Tuomas Rajala;
Dominic Schuhmacher;
and
Rasmus Waagepetersen.
Additional contributions
by Q.W. Ang;
S. Azaele;
M. Baddeley;
C. Beale;
M. Bell;
R. Bernhardt;
T. Bendtsen;
A. Bevan;
B. Biggerstaff;
A. Bilgrau;
L. Bischof;
C. Biscio;
R. Bivand;
J.M. Blanco Moreno;
F. Bonneu;
J. Burgos;
S. Byers;
Y.M. Chang;
J.B. Chen;
I. Chernayavsky;
Y.C. Chin;
B. Christensen;
J.-F. Coeurjolly;
R. Corria Ainslie;
M. de la Cruz;
P. Dalgaard;
S. Das;
P.J. Diggle;
P. Donnelly;
I. Dryden;
S. Eglen;
A. El-Gabbas;
B. Fandohan;
O. Flores;
E.D. Ford;
P. Forbes;
S. Frank;
J. Franklin;
N. Funwi-Gabga;
O. Garcia;
A. Gault;
M. Genton;
S. Ghalandarayeshi;
J. Gilbey;
J. Goldstick;
P. Grabarnik;
C. Graf;
U. Hahn;
A. Hardegen;
M.B. Hansen;
M. Hazelton;
J. Heikkinen;
M. Hering;
M. Herrmann;
K. Hornik;
P. Hunziker;
J. Hywood;
R. Ihaka;
A. Jammalamadaka;
R. John-Chandran;
D. Johnson;
M. Khanmohammadi;
R. Klaver;
P. Kovesi;
M. Kuhn;
J. Laake;
F. Lavancier;
T. Lawrence;
R.A. Lamb;
J. Lee;
G.P. Leser;
H.T. Li;
G. Limitsios;
A. Lister;
B. Madin;
M. Maechler;
J. Marcus;
K. Marchikanti;
R. Mark;
J. Mateu;
P. McCullagh;
U. Mehlig;
S. Meyer;
X.C. Mi;
L. De Middeleer;
R.K. Milne;
E. Miranda;
J. Moller;
E. Mudrak;
G.M. Nair;
N. Nava;
L.S. Nielsen;
F. Nunes;
J.R. Nyengaard;
J. Oehlschlaegel;
T. Onkelinx;
S. O'Riordan;
E. Parilov;
J. Picka;
N. Picard;
M. Porter;
S. Protsiv;
A. Raftery;
S. Rakshit;
B. Ramage;
P. Ramon;
X. Raynaud,
M. Reiter;
I. Renner;
T.O. Richardson;
B.D. Ripley;
E. Rosenbaum;
B. Rowlingson;
J. Rudokas;
J. Rudge;
C. Ryan;
F. Safavimanesh;
A. Sarkka;
C. Schank;
K. Schladitz;
S. Schutte;
B.T. Scott;
O. Semboli;
F. Semecurbe;
V. Shcherbakov;
G.C. Shen;
H.-J. Ship;
I.-M. Sintorn;
Y. Song;
M. Spiess;
M. Stevenson;
K. Stucki;
M. Sumner;
P. Surovy;
B. Taylor;
T. Thorarinsdottir;
B. Turlach;
T. Tvedebrink;
K. Ummer;
M. Uppala;
A. van Burgel;
T. Verbeke;
M. Vihtakari;
A. Villers;
F. Vinatier;
S. Voss;
H. Wang;
H. Wendrock;
J. Wild;
C. Witthoft;
S. Wong;
M. Woringer;
M.E. Zamboni
and
A. Zeileis.
Maintainer: Adrian Baddeley <Adrian.Baddeley@uwa.edu.au>
Diff between spatstat versions 1.42-2 dated 2015-06-29 and 1.43-0 dated 2015-10-08
spatstat-1.42-2/spatstat/README.md |only spatstat-1.42-2/spatstat/man/project.ppm.Rd |only spatstat-1.43-0/spatstat/DESCRIPTION | 24 spatstat-1.43-0/spatstat/MD5 | 611 +++++++------- spatstat-1.43-0/spatstat/NAMESPACE | 172 +++ spatstat-1.43-0/spatstat/NEWS | 403 +++++++++ spatstat-1.43-0/spatstat/R/First.R | 11 spatstat-1.43-0/spatstat/R/Hest.R | 151 +-- spatstat-1.43-0/spatstat/R/adaptive.density.R | 5 spatstat-1.43-0/spatstat/R/anova.mppm.R | 19 spatstat-1.43-0/spatstat/R/areadiff.R | 5 spatstat-1.43-0/spatstat/R/as.im.R | 11 spatstat-1.43-0/spatstat/R/bw.ppl.R | 6 spatstat-1.43-0/spatstat/R/cdf.test.mppm.R | 9 spatstat-1.43-0/spatstat/R/cdftest.R | 9 spatstat-1.43-0/spatstat/R/clusterinfo.R | 63 - spatstat-1.43-0/spatstat/R/colourtables.R | 131 +-- spatstat-1.43-0/spatstat/R/colourtools.R | 146 ++- spatstat-1.43-0/spatstat/R/daogenton.R |only spatstat-1.43-0/spatstat/R/dclftest.R | 432 +++++---- spatstat-1.43-0/spatstat/R/defaultwin.R | 5 spatstat-1.43-0/spatstat/R/density.lpp.R | 36 spatstat-1.43-0/spatstat/R/detPPF-class.R |only spatstat-1.43-0/spatstat/R/detpointprocfamilyfun.R |only spatstat-1.43-0/spatstat/R/dppm.R |only spatstat-1.43-0/spatstat/R/dppmclass.R | 23 spatstat-1.43-0/spatstat/R/effectfun.R | 4 spatstat-1.43-0/spatstat/R/envelope.R | 438 +++++----- spatstat-1.43-0/spatstat/R/envelope3.R | 6 spatstat-1.43-0/spatstat/R/envelopelpp.R | 10 spatstat-1.43-0/spatstat/R/fourierbasis.R |only spatstat-1.43-0/spatstat/R/fv.R | 34 spatstat-1.43-0/spatstat/R/hackglmm.R |only spatstat-1.43-0/spatstat/R/hasenvelope.R |only spatstat-1.43-0/spatstat/R/ho.R | 9 spatstat-1.43-0/spatstat/R/hypersub.R | 25 spatstat-1.43-0/spatstat/R/images.R | 27 spatstat-1.43-0/spatstat/R/interactions.R | 19 spatstat-1.43-0/spatstat/R/iplot.R | 9 spatstat-1.43-0/spatstat/R/iplotlayered.R | 4 spatstat-1.43-0/spatstat/R/istat.R | 2 spatstat-1.43-0/spatstat/R/kernels.R |only spatstat-1.43-0/spatstat/R/kppm.R | 273 +++++- spatstat-1.43-0/spatstat/R/linalg.R | 18 spatstat-1.43-0/spatstat/R/linfun.R | 4 spatstat-1.43-0/spatstat/R/localK.R | 10 spatstat-1.43-0/spatstat/R/lpp.R | 18 spatstat-1.43-0/spatstat/R/lppm.R | 15 spatstat-1.43-0/spatstat/R/lurking.R | 9 spatstat-1.43-0/spatstat/R/markcorr.R | 226 ++++- spatstat-1.43-0/spatstat/R/measures.R | 2 spatstat-1.43-0/spatstat/R/morphology.R | 8 spatstat-1.43-0/spatstat/R/mpl.R | 10 spatstat-1.43-0/spatstat/R/mppm.R | 72 + spatstat-1.43-0/spatstat/R/objsurf.R | 2 spatstat-1.43-0/spatstat/R/options.R | 60 + spatstat-1.43-0/spatstat/R/penttinen.R |only spatstat-1.43-0/spatstat/R/persp.im.R | 21 spatstat-1.43-0/spatstat/R/plot.fv.R | 5 spatstat-1.43-0/spatstat/R/plot.im.R | 35 spatstat-1.43-0/spatstat/R/plot.mppm.R | 26 spatstat-1.43-0/spatstat/R/plot.ppp.R | 21 spatstat-1.43-0/spatstat/R/pp3.R | 2 spatstat-1.43-0/spatstat/R/ppm.R | 6 spatstat-1.43-0/spatstat/R/ppmclass.R | 28 spatstat-1.43-0/spatstat/R/ppp.R | 25 spatstat-1.43-0/spatstat/R/ppqq.R |only spatstat-1.43-0/spatstat/R/ppx.R | 75 + spatstat-1.43-0/spatstat/R/predictmppm.R | 3 spatstat-1.43-0/spatstat/R/primefactors.R | 7 spatstat-1.43-0/spatstat/R/profilepl.R | 9 spatstat-1.43-0/spatstat/R/progress.R | 194 +++- spatstat-1.43-0/spatstat/R/psst.R | 8 spatstat-1.43-0/spatstat/R/qqplotppm.R | 9 spatstat-1.43-0/spatstat/R/quadratmtest.R | 2 spatstat-1.43-0/spatstat/R/quadratresample.R | 8 spatstat-1.43-0/spatstat/R/quantiledensity.R |only spatstat-1.43-0/spatstat/R/rLGCP.R | 8 spatstat-1.43-0/spatstat/R/random.R | 104 +- spatstat-1.43-0/spatstat/R/randomNS.R | 63 + spatstat-1.43-0/spatstat/R/randommk.R | 14 spatstat-1.43-0/spatstat/R/reduceformula.R | 2 spatstat-1.43-0/spatstat/R/resid4plot.R | 34 spatstat-1.43-0/spatstat/R/rmh.default.R | 34 spatstat-1.43-0/spatstat/R/rmh.ppm.R | 17 spatstat-1.43-0/spatstat/R/rmhcontrol.R | 4 spatstat-1.43-0/spatstat/R/rmhmodel.R | 516 ++++++----- spatstat-1.43-0/spatstat/R/rmhtemper.R |only spatstat-1.43-0/spatstat/R/rose.R | 4 spatstat-1.43-0/spatstat/R/scanstat.R | 9 spatstat-1.43-0/spatstat/R/segtest.R | 9 spatstat-1.43-0/spatstat/R/sigtrace.R |only spatstat-1.43-0/spatstat/R/simulate.detPPF.R |only spatstat-1.43-0/spatstat/R/simulatelppm.R | 5 spatstat-1.43-0/spatstat/R/slrm.R | 9 spatstat-1.43-0/spatstat/R/split.ppp.R | 12 spatstat-1.43-0/spatstat/R/subfits.R | 54 - spatstat-1.43-0/spatstat/R/subset.R | 11 spatstat-1.43-0/spatstat/R/summary.mppm.R | 65 + spatstat-1.43-0/spatstat/R/superimpose.R | 12 spatstat-1.43-0/spatstat/R/treebranches.R | 4 spatstat-1.43-0/spatstat/R/util.R | 297 ++++-- spatstat-1.43-0/spatstat/R/vcov.kppm.R | 10 spatstat-1.43-0/spatstat/R/vcov.mppm.R | 187 +++- spatstat-1.43-0/spatstat/R/vcov.ppm.R | 18 spatstat-1.43-0/spatstat/R/window.R | 15 spatstat-1.43-0/spatstat/R/xypolygon.R | 16 spatstat-1.43-0/spatstat/build/vignette.rds |binary spatstat-1.43-0/spatstat/data/Kovesi.rda |binary spatstat-1.43-0/spatstat/data/amacrine.rda |binary spatstat-1.43-0/spatstat/data/anemones.rda |binary spatstat-1.43-0/spatstat/data/ants.rda |binary spatstat-1.43-0/spatstat/data/austates.rda |only spatstat-1.43-0/spatstat/data/bdspots.rda |binary spatstat-1.43-0/spatstat/data/bei.rda |binary spatstat-1.43-0/spatstat/data/betacells.rda |binary spatstat-1.43-0/spatstat/data/bramblecanes.rda |binary spatstat-1.43-0/spatstat/data/bronzefilter.rda |binary spatstat-1.43-0/spatstat/data/cells.rda |binary spatstat-1.43-0/spatstat/data/chicago.rda |binary spatstat-1.43-0/spatstat/data/chorley.rda |binary spatstat-1.43-0/spatstat/data/clmfires.rda |binary spatstat-1.43-0/spatstat/data/copper.rda |binary spatstat-1.43-0/spatstat/data/datalist | 1 spatstat-1.43-0/spatstat/data/demohyper.rda |binary spatstat-1.43-0/spatstat/data/demopat.rda |binary spatstat-1.43-0/spatstat/data/dendrite.rda |binary spatstat-1.43-0/spatstat/data/finpines.rda |binary spatstat-1.43-0/spatstat/data/flu.rda |binary spatstat-1.43-0/spatstat/data/ganglia.rda |binary spatstat-1.43-0/spatstat/data/gordon.rda |binary spatstat-1.43-0/spatstat/data/gorillas.rda |binary spatstat-1.43-0/spatstat/data/hamster.rda |binary spatstat-1.43-0/spatstat/data/heather.rda |binary spatstat-1.43-0/spatstat/data/humberside.rda |binary spatstat-1.43-0/spatstat/data/hyytiala.rda |binary spatstat-1.43-0/spatstat/data/japanesepines.rda |binary spatstat-1.43-0/spatstat/data/lansing.rda |binary spatstat-1.43-0/spatstat/data/letterR.rda |binary spatstat-1.43-0/spatstat/data/longleaf.rda |binary spatstat-1.43-0/spatstat/data/mucosa.rda |binary spatstat-1.43-0/spatstat/data/murchison.rda |binary spatstat-1.43-0/spatstat/data/nbfires.rda |binary spatstat-1.43-0/spatstat/data/nztrees.rda |binary spatstat-1.43-0/spatstat/data/osteo.rda |binary spatstat-1.43-0/spatstat/data/paracou.rda |binary spatstat-1.43-0/spatstat/data/ponderosa.rda |binary spatstat-1.43-0/spatstat/data/pyramidal.rda |binary spatstat-1.43-0/spatstat/data/redwood.rda |binary spatstat-1.43-0/spatstat/data/redwoodfull.rda |binary spatstat-1.43-0/spatstat/data/residualspaper.rda |binary spatstat-1.43-0/spatstat/data/shapley.rda |binary spatstat-1.43-0/spatstat/data/simba.rda |binary spatstat-1.43-0/spatstat/data/simdat.rda |binary spatstat-1.43-0/spatstat/data/simplenet.rda |binary spatstat-1.43-0/spatstat/data/spiders.rda |binary spatstat-1.43-0/spatstat/data/sporophores.rda |binary spatstat-1.43-0/spatstat/data/spruces.rda |binary spatstat-1.43-0/spatstat/data/swedishpines.rda |binary spatstat-1.43-0/spatstat/data/urkiola.rda |binary spatstat-1.43-0/spatstat/data/vesicles.rda |binary spatstat-1.43-0/spatstat/data/waka.rda |binary spatstat-1.43-0/spatstat/data/waterstriders.rda |binary spatstat-1.43-0/spatstat/demo/data.R | 2 spatstat-1.43-0/spatstat/inst/CITATION | 4 spatstat-1.43-0/spatstat/inst/doc/datasets.R | 143 +-- spatstat-1.43-0/spatstat/inst/doc/datasets.Rnw | 20 spatstat-1.43-0/spatstat/inst/doc/datasets.pdf |binary spatstat-1.43-0/spatstat/inst/doc/getstart.pdf |binary spatstat-1.43-0/spatstat/inst/doc/replicated.R | 37 spatstat-1.43-0/spatstat/inst/doc/replicated.Rnw | 151 +++ spatstat-1.43-0/spatstat/inst/doc/replicated.pdf |binary spatstat-1.43-0/spatstat/inst/doc/shapefiles.pdf |binary spatstat-1.43-0/spatstat/inst/doc/updates.R | 4 spatstat-1.43-0/spatstat/inst/doc/updates.Rnw | 359 +++++++- spatstat-1.43-0/spatstat/inst/doc/updates.pdf |binary spatstat-1.43-0/spatstat/man/CDF.Rd |only spatstat-1.43-0/spatstat/man/Extract.lpp.Rd | 18 spatstat-1.43-0/spatstat/man/Extract.ppp.Rd | 61 + spatstat-1.43-0/spatstat/man/Extract.ppx.Rd | 13 spatstat-1.43-0/spatstat/man/Kmodel.dppm.Rd |only spatstat-1.43-0/spatstat/man/PPversion.Rd |only spatstat-1.43-0/spatstat/man/Penttinen.Rd |only spatstat-1.43-0/spatstat/man/WindowOnly.Rd | 5 spatstat-1.43-0/spatstat/man/adaptive.density.Rd | 6 spatstat-1.43-0/spatstat/man/anova.mppm.Rd | 19 spatstat-1.43-0/spatstat/man/anova.ppm.Rd | 12 spatstat-1.43-0/spatstat/man/as.boxx.Rd |only spatstat-1.43-0/spatstat/man/as.fv.Rd | 13 spatstat-1.43-0/spatstat/man/as.im.Rd | 10 spatstat-1.43-0/spatstat/man/as.owin.Rd | 9 spatstat-1.43-0/spatstat/man/as.ppm.Rd | 15 spatstat-1.43-0/spatstat/man/austates.Rd |only spatstat-1.43-0/spatstat/man/bdspots.Rd | 3 spatstat-1.43-0/spatstat/man/branchlabelfun.Rd | 4 spatstat-1.43-0/spatstat/man/bw.ppl.Rd | 6 spatstat-1.43-0/spatstat/man/cdf.test.mppm.Rd | 36 spatstat-1.43-0/spatstat/man/coef.mppm.Rd | 19 spatstat-1.43-0/spatstat/man/collapse.fv.Rd | 22 spatstat-1.43-0/spatstat/man/colourtools.Rd | 82 + spatstat-1.43-0/spatstat/man/contour.im.Rd | 26 spatstat-1.43-0/spatstat/man/dclf.progress.Rd | 40 spatstat-1.43-0/spatstat/man/dclf.sigtrace.Rd |only spatstat-1.43-0/spatstat/man/dclf.test.Rd | 53 - spatstat-1.43-0/spatstat/man/default.expand.Rd | 6 spatstat-1.43-0/spatstat/man/default.rmhcontrol.Rd | 8 spatstat-1.43-0/spatstat/man/density.lpp.Rd | 33 spatstat-1.43-0/spatstat/man/detpointprocfamilyfun.Rd |only spatstat-1.43-0/spatstat/man/dg.envelope.Rd |only spatstat-1.43-0/spatstat/man/dg.progress.Rd |only spatstat-1.43-0/spatstat/man/dg.sigtrace.Rd |only spatstat-1.43-0/spatstat/man/dg.test.Rd |only spatstat-1.43-0/spatstat/man/diagnose.ppm.Rd | 3 spatstat-1.43-0/spatstat/man/dim.detpointprocfamily.Rd |only spatstat-1.43-0/spatstat/man/distfun.lpp.Rd | 2 spatstat-1.43-0/spatstat/man/dkernel.Rd |only spatstat-1.43-0/spatstat/man/domain.Rd | 5 spatstat-1.43-0/spatstat/man/dppBessel.Rd |only spatstat-1.43-0/spatstat/man/dppCauchy.Rd |only spatstat-1.43-0/spatstat/man/dppGauss.Rd |only spatstat-1.43-0/spatstat/man/dppMatern.Rd |only spatstat-1.43-0/spatstat/man/dppPowerExp.Rd |only spatstat-1.43-0/spatstat/man/dppapproxkernel.Rd |only spatstat-1.43-0/spatstat/man/dppapproxpcf.Rd |only spatstat-1.43-0/spatstat/man/dppeigen.Rd |only spatstat-1.43-0/spatstat/man/dppkernel.Rd |only spatstat-1.43-0/spatstat/man/dppm.Rd |only spatstat-1.43-0/spatstat/man/dppparbounds.Rd |only spatstat-1.43-0/spatstat/man/dppspecden.Rd |only spatstat-1.43-0/spatstat/man/dppspecdenrange.Rd |only 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spatstat-1.43-0/spatstat/man/model.images.Rd | 18 spatstat-1.43-0/spatstat/man/model.matrix.ppm.Rd | 19 spatstat-1.43-0/spatstat/man/mppm.Rd | 68 + spatstat-1.43-0/spatstat/man/nnfun.lpp.Rd | 7 spatstat-1.43-0/spatstat/man/objsurf.Rd | 11 spatstat-1.43-0/spatstat/man/parameters.Rd | 5 spatstat-1.43-0/spatstat/man/plot.bermantest.Rd | 6 spatstat-1.43-0/spatstat/man/plot.dppm.Rd |only spatstat-1.43-0/spatstat/man/plot.influence.ppm.Rd | 2 spatstat-1.43-0/spatstat/man/plot.linim.Rd | 6 spatstat-1.43-0/spatstat/man/plot.mppm.Rd | 61 - spatstat-1.43-0/spatstat/man/plot.ppp.Rd | 5 spatstat-1.43-0/spatstat/man/plot.slrm.Rd | 4 spatstat-1.43-0/spatstat/man/pool.envelope.Rd | 1 spatstat-1.43-0/spatstat/man/ppm.Rd | 2 spatstat-1.43-0/spatstat/man/ppm.ppp.Rd | 18 spatstat-1.43-0/spatstat/man/predict.dppm.Rd |only spatstat-1.43-0/spatstat/man/predict.kppm.Rd | 2 spatstat-1.43-0/spatstat/man/predict.lppm.Rd | 2 spatstat-1.43-0/spatstat/man/predict.mppm.Rd | 24 spatstat-1.43-0/spatstat/man/predict.slrm.Rd | 2 spatstat-1.43-0/spatstat/man/progressreport.Rd | 41 spatstat-1.43-0/spatstat/man/quadrat.test.mppm.Rd | 25 spatstat-1.43-0/spatstat/man/quantile.density.Rd |only spatstat-1.43-0/spatstat/man/rCauchy.Rd | 4 spatstat-1.43-0/spatstat/man/rLGCP.Rd | 5 spatstat-1.43-0/spatstat/man/rMatClust.Rd | 4 spatstat-1.43-0/spatstat/man/rVarGamma.Rd | 4 spatstat-1.43-0/spatstat/man/ranef.mppm.Rd |only spatstat-1.43-0/spatstat/man/rdpp.Rd |only spatstat-1.43-0/spatstat/man/reach.dppm.Rd |only spatstat-1.43-0/spatstat/man/relrisk.ppm.Rd | 1 spatstat-1.43-0/spatstat/man/residuals.dppm.Rd |only spatstat-1.43-0/spatstat/man/residuals.kppm.Rd | 2 spatstat-1.43-0/spatstat/man/residuals.mppm.Rd | 27 spatstat-1.43-0/spatstat/man/rgbim.Rd | 12 spatstat-1.43-0/spatstat/man/rmh.ppm.Rd | 2 spatstat-1.43-0/spatstat/man/rmpoispp.Rd | 7 spatstat-1.43-0/spatstat/man/rpoispp.Rd | 15 spatstat-1.43-0/spatstat/man/rtemper.Rd |only spatstat-1.43-0/spatstat/man/rthin.Rd | 6 spatstat-1.43-0/spatstat/man/simulate.dppm.Rd |only spatstat-1.43-0/spatstat/man/simulate.ppm.Rd | 7 spatstat-1.43-0/spatstat/man/slrm.Rd | 2 spatstat-1.43-0/spatstat/man/spatdim.Rd |only spatstat-1.43-0/spatstat/man/spatstat-internal.Rd | 91 +- spatstat-1.43-0/spatstat/man/spatstat-package.Rd | 70 + spatstat-1.43-0/spatstat/man/spatstat.options.Rd | 27 spatstat-1.43-0/spatstat/man/split.ppp.Rd | 3 spatstat-1.43-0/spatstat/man/studpermu.test.Rd | 6 spatstat-1.43-0/spatstat/man/subfits.Rd | 21 spatstat-1.43-0/spatstat/man/subset.ppp.Rd | 29 spatstat-1.43-0/spatstat/man/suffstat.Rd | 9 spatstat-1.43-0/spatstat/man/superimpose.Rd | 6 spatstat-1.43-0/spatstat/man/unitname.Rd | 6 spatstat-1.43-0/spatstat/man/update.detpointprocfamily.Rd |only spatstat-1.43-0/spatstat/man/valid.Rd |only spatstat-1.43-0/spatstat/man/valid.detpointprocfamily.Rd |only spatstat-1.43-0/spatstat/man/valid.ppm.Rd | 10 spatstat-1.43-0/spatstat/man/vcov.mppm.Rd | 29 spatstat-1.43-0/spatstat/man/waterstriders.Rd | 2 spatstat-1.43-0/spatstat/src/methas.c | 18 spatstat-1.43-0/spatstat/src/methas.h | 2 spatstat-1.43-0/spatstat/src/mhloop.h | 74 + spatstat-1.43-0/spatstat/src/mhv4.h | 4 spatstat-1.43-0/spatstat/src/mhv5.h |only spatstat-1.43-0/spatstat/src/rthin.c |only spatstat-1.43-0/spatstat/tests/alltests.R | 121 +- spatstat-1.43-0/spatstat/vignettes/datasets.Rnw | 20 spatstat-1.43-0/spatstat/vignettes/packagesizes.txt | 3 spatstat-1.43-0/spatstat/vignettes/replicated.Rnw | 151 +++ spatstat-1.43-0/spatstat/vignettes/updates.Rnw | 359 +++++++- 341 files changed, 6319 insertions(+), 2301 deletions(-)
Title: R Interface to X-13-ARIMA-SEATS
Description: Easy-to-use interface to X-13-ARIMA-SEATS, the
seasonal adjustment software by the US Census Bureau. It offers full
access to almost all options and outputs of X-13, including X-11 and SEATS,
automatic ARIMA model search, outlier detection and support for user
defined holiday variables, such as Chinese New Year or Indian Diwali. It
also includes a Shiny-based graphical user interface. Seasonal does not
contain the binaries of X-13, which must be installed separately. See the
README file or the vignette for installation notes.
Author: Christoph Sax
Maintainer: Christoph Sax <christoph.sax@gmail.com>
Diff between seasonal versions 1.0.0 dated 2015-08-14 and 1.1.0 dated 2015-10-08
DESCRIPTION | 10 +++++----- MD5 | 42 +++++++++++++++++++++--------------------- NEWS | 17 +++++++++++++++-- R/diagnostics.R | 4 ++-- R/extractors.R | 4 ++-- R/out.R | 4 ++-- R/parse_spc.R | 3 +++ R/plot.R | 4 ++-- R/read_series.R | 3 +++ R/seas.R | 5 ++--- R/series.R | 11 +++++++++-- R/static.R | 4 ++-- README.md | 27 ++++++++++++--------------- inst/doc/seas.pdf |binary man/final.Rd | 4 ++-- man/out.Rd | 4 ++-- man/plot.seas.Rd | 4 ++-- man/qs.Rd | 4 ++-- man/seas.Rd | 5 ++--- man/series.Rd | 11 +++++++++-- man/static.Rd | 4 ++-- vignettes/README.tex | 24 ++++++++++++------------ 22 files changed, 113 insertions(+), 85 deletions(-)
Title: Compares the Distribution of Sister Clades Through a Phylogeny
Description: An implementation of the nodiv algorithm, (see Borregaard, M.K., Rahbek, C., Fjeldsaa, J., Parra, J.L., Whittaker, R.J. & Graham, C.H. 2014. Node-based analysis of species distributions. Methods in Ecology and Evolution 5(11): 1225-1235. DOI: 10.1111/2041-210X.12283. Package for phylogenetic analysis of species distributions. The main function goes through each node in the phylogeny, compares the distributions of the two descendant nodes, and compares the result to a null model. This highlights nodes where major distributional divergence have occurred. The distributional divergence for these nodes is mapped using the SOS statistic.
Author: Michael Krabbe Borregaard
Maintainer: Michael Krabbe Borregaard <mkborregaard@snm.ku.dk>
Diff between nodiv versions 1.1.0 dated 2015-06-14 and 1.1.1 dated 2015-10-08
nodiv-1.1.0/nodiv/tests/testthat/test_initial.R |only nodiv-1.1.1/nodiv/DESCRIPTION | 6 nodiv-1.1.1/nodiv/MD5 | 16 + nodiv-1.1.1/nodiv/NAMESPACE | 7 nodiv-1.1.1/nodiv/R/Add_to_data_object.R | 102 ++++++++---- nodiv-1.1.1/nodiv/R/Methods_for_data_objects.R | 60 ++++++- nodiv-1.1.1/nodiv/R/Node_based_analysis.R | 13 - nodiv-1.1.1/nodiv/R/Prepare_data.R | 132 ++++++++++++---- nodiv-1.1.1/nodiv/man/gridData.Rd |only nodiv-1.1.1/nodiv/tests/testthat/test_access.R |only nodiv-1.1.1/nodiv/tests/testthat/test_basic_functions.R |only 11 files changed, 258 insertions(+), 78 deletions(-)
Title: Numerical Weather Predictions
Description: Access to several Numerical Weather Prediction services both in raster format and as a time series for a location. Currenty it works with GFS, MeteoGalicia, NAM, and RAP.
Author: Oscar Perpinan Lamigueiro [cre, aut],
Marcelo Pinho Almeida [ctb]
Maintainer: Oscar Perpinan Lamigueiro <oscar.perpinan@gmail.com>
Diff between meteoForecast versions 0.45 dated 2015-05-21 and 0.47 dated 2015-10-08
meteoForecast-0.45/meteoForecast/data |only meteoForecast-0.47/meteoForecast/DESCRIPTION | 10 - meteoForecast-0.47/meteoForecast/MD5 | 23 +-- meteoForecast-0.47/meteoForecast/NAMESPACE | 50 ++++++-- meteoForecast-0.47/meteoForecast/R/composeURL.R | 89 ++++++++++----- meteoForecast-0.47/meteoForecast/R/grepVar.R | 25 ++-- meteoForecast-0.47/meteoForecast/R/pointNCDC.R | 12 +- meteoForecast-0.47/meteoForecast/R/rasterMeteoGalicia.R | 2 meteoForecast-0.47/meteoForecast/man/getPoint.Rd | 10 - meteoForecast-0.47/meteoForecast/man/getRaster.Rd | 2 meteoForecast-0.47/meteoForecast/man/vars.Rd | 94 ++-------------- 11 files changed, 152 insertions(+), 165 deletions(-)
Title: Lightweight Logging for R Scripts
Description: Provides flexible but lightweight logging facilities for R scripts. Supports priority levels for logs and messages, flagging messages, capturing script output, switching logs, and logging to files or connections.
Author: Ben Bond-Lamberty [aut, cre]
Maintainer: Ben Bond-Lamberty <bondlamberty@pnnl.gov>
Diff between luzlogr versions 0.1.0 dated 2015-10-05 and 0.1.1 dated 2015-10-08
luzlogr-0.1.0/luzlogr/vignettes/Introduction.Rmd |only luzlogr-0.1.1/luzlogr/DESCRIPTION | 9 +++++---- luzlogr-0.1.1/luzlogr/MD5 | 14 +++++++++----- luzlogr-0.1.1/luzlogr/NEWS | 6 ++++++ luzlogr-0.1.1/luzlogr/README.md | 10 +++++----- luzlogr-0.1.1/luzlogr/build |only luzlogr-0.1.1/luzlogr/inst |only luzlogr-0.1.1/luzlogr/tests/testthat/test_logging.R | 12 ++++++++++++ luzlogr-0.1.1/luzlogr/vignettes/intro-luzlogr.Rmd |only 9 files changed, 37 insertions(+), 14 deletions(-)
Title: Lambert-W Function
Description: Implements both real-valued branches of the Lambert-W function, also known as the product logarithm, without the need for installing the entire GSL.
Author: Avraham Adler [aut, cph, cre]
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>
Diff between lamW versions 0.1-1 dated 2015-05-20 and 0.1-2 dated 2015-10-08
lamW-0.1-1/lamW/inst/NEWS.Rd |only lamW-0.1-2/lamW/DESCRIPTION | 8 ++++---- lamW-0.1-2/lamW/MD5 | 14 +++++++------- lamW-0.1-2/lamW/build/partial.rdb |binary lamW-0.1-2/lamW/inst/News.Rd |only lamW-0.1-2/lamW/man/lamW-package.Rd | 9 +++------ lamW-0.1-2/lamW/man/lamW.Rd | 4 ++-- lamW-0.1-2/lamW/src/lambertW.cpp | 8 ++++++-- lamW-0.1-2/lamW/tests/testthat/test-lamW.R | 10 +++++----- 9 files changed, 27 insertions(+), 26 deletions(-)
Title: Calibration Plot for Proteomics
Description: Functions to check whether a vector of p-values respects the assumptions of FDR (false discovery rate) control procedures and to compute adjusted p-values.
Author: Quentin Giai Gianetto, Florence Combes, Yohann Couté, Christophe Bruley, Thomas Burger
Maintainer: Quentin Giai Gianetto <quentin2g@yahoo.fr>
Diff between cp4p versions 0.3.1 dated 2015-08-17 and 0.3.2 dated 2015-10-08
DESCRIPTION | 8 ++++---- MD5 | 19 ++++++++++--------- NAMESPACE | 2 +- R/calibration_plot.R | 25 ++++++++++--------------- inst |only man/LFQRatio2.Rd | 4 ++-- man/LFQRatio25.Rd | 4 ++-- man/adjust.p.Rd | 2 +- man/calibration.plot.Rd | 2 +- man/cp4p-package.Rd | 2 +- man/estim.pi0.Rd | 2 +- 11 files changed, 33 insertions(+), 37 deletions(-)
Title: Simultaneous Variables Clustering and Regression
Description: Implements an empirical Bayes approach for simultaneous variable clustering and regression. This version also (re)implements in C++ an R script proposed by Howard Bondell that fits the Pairwise Absolute Clustering and Sparsity (PACS) methodology (see Sharma DB et al. - 2013).
Author: Loic Yengo, Mickael Canouil
Maintainer: Loic Yengo <loic.yengo@gmail.com>
Diff between clere versions 1.1.1 dated 2015-10-01 and 1.1.2 dated 2015-10-08
clere-1.1.1/clere/vignettes/RJpaper-vignette.ltx |only clere-1.1.1/clere/vignettes/biblio.bib |only clere-1.1.1/clere/vignettes/images |only clere-1.1.2/clere/DESCRIPTION | 10 +++---- clere-1.1.2/clere/MD5 | 31 +++++++++++------------ clere-1.1.2/clere/R/fitPacs.R | 6 ++++ clere-1.1.2/clere/build/vignette.rds |binary clere-1.1.2/clere/data/algoComp.RData |binary clere-1.1.2/clere/data/numExpRealData.RData |binary clere-1.1.2/clere/data/numExpSimData.RData |binary clere-1.1.2/clere/inst/doc/RJpaper-vignette.pdf |binary clere-1.1.2/clere/inst/doc/Vignette.pdf |only clere-1.1.2/clere/inst/doc/Vignette.pdf.asis |only clere-1.1.2/clere/man/clere-package.Rd | 4 +- clere-1.1.2/clere/man/fitPacs.Rd | 21 ++++++++------- clere-1.1.2/clere/man/numExpRealData.Rd | 2 - clere-1.1.2/clere/src/Model.cpp | 5 +-- clere-1.1.2/clere/src/pacs.cpp | 29 ++++++++++++--------- clere-1.1.2/clere/vignettes/Vignette.pdf.asis |only 19 files changed, 60 insertions(+), 48 deletions(-)
Title: Calibration Functions for Analytical Chemistry
Description: Simple functions for plotting linear
calibration functions and estimating standard errors for measurements
according to the Handbook of Chemometrics and Qualimetrics: Part A
by Massart et al. There are also functions estimating the limit
of detection (LOD) and limit of quantification (LOQ).
The functions work on model objects from - optionally weighted - linear
regression (lm) or robust linear regression ('rlm' from the 'MASS' package).
Author: Johannes Ranke [aut, cre, cph]
Maintainer: Johannes Ranke <jranke@uni-bremen.de>
Diff between chemCal versions 0.1-34 dated 2014-04-25 and 0.1-37 dated 2015-10-08
DESCRIPTION | 24 +++++++++++++----------- MD5 | 35 +++++++++++++++++++++++++++++------ NAMESPACE | 8 ++++++++ build/vignette.rds |binary data/din32645.rda |binary inst/doc/chemCal.pdf |binary inst/staticdocs |only inst/web |only man/din32645.Rd | 4 ++-- 9 files changed, 52 insertions(+), 19 deletions(-)
Title: A Lightweight Core of the 'assertive' Package
Description: A minimal set of predicates and assertions used by the assertive
package. This is mainly for use by other package developers who want to
include run-time testing features in their own packages. End-users will
usually want to use assertive directly.
Author: Richard Cotton [aut, cre],
Sunkyu Choi [trl],
Ivanka Skakun [trl],
Gergely Dar<c3><b3>czi [trl],
Anton Antonov [trl],
Hisham Ben Hamidane [trl],
Anja Billing [trl],
Aditya Bhagwat [trl],
Rasmus B<c3><a5><c3><a5>th [trl],
Mine Cetinkaya-Rundel [trl],
Aspasia Chatziefthymiou [trl]
Maintainer: Richard Cotton <richierocks@gmail.com>
Diff between assertive.base versions 0.0-2 dated 2015-10-06 and 0.0-3 dated 2015-10-08
DESCRIPTION | 8 +- MD5 | 14 ++-- NEWS | 1 R/assert-identical-to-true-false-na.R | 19 +++-- R/assert-is-true-false-na.R | 107 +++++++++++++++++++++++++++++---- R/is-true-false-na.R | 44 +++++++------ man/Truth.Rd | 34 +++++----- tests/testthat/test-is-true-false-na.R | 92 ++++++++++++++++++++++++++++ 8 files changed, 251 insertions(+), 68 deletions(-)
More information about assertive.base at CRAN
Permanent link
Title: Readable Check Functions to Ensure Code Integrity
Description: Lots of is_* functions to check the state of your variables,
and assert_* functions to throw errors if they aren't in the right form.
Author: Richard Cotton [aut, cre]
Maintainer: Richard Cotton <richierocks@gmail.com>
Diff between assertive versions 0.3-0 dated 2015-07-15 and 0.3-1 dated 2015-10-08
assertive-0.3-0/assertive/R/are-same.R |only assertive-0.3-0/assertive/R/assert-are-same.R |only assertive-0.3-0/assertive/R/assert-has.R |only assertive-0.3-0/assertive/R/assert-is-a-type.R |only assertive-0.3-0/assertive/R/assert-is-atomic-recursive-vector.R |only assertive-0.3-0/assertive/R/assert-is-binding.R |only assertive-0.3-0/assertive/R/assert-is-connection.R |only assertive-0.3-0/assertive/R/assert-is-empty-scalar.R |only assertive-0.3-0/assertive/R/assert-is-file.R |only assertive-0.3-0/assertive/R/assert-is-in-range.R |only assertive-0.3-0/assertive/R/assert-is-infinity-nan.R |only assertive-0.3-0/assertive/R/assert-is-null.R |only assertive-0.3-0/assertive/R/assert-is-other.R |only assertive-0.3-0/assertive/R/assert-is-real-imaginary.R |only assertive-0.3-0/assertive/R/assert-is-reflection.R |only assertive-0.3-0/assertive/R/assert-is-set.R |only assertive-0.3-0/assertive/R/assert-is-string-uk.R |only assertive-0.3-0/assertive/R/assert-is-string-us.R |only assertive-0.3-0/assertive/R/assert-is-string.R |only assertive-0.3-0/assertive/R/assert-is-time.R |only assertive-0.3-0/assertive/R/assert-is-type.R |only assertive-0.3-0/assertive/R/assert-r-has-capability.R |only assertive-0.3-0/assertive/R/has.R |only assertive-0.3-0/assertive/R/internal-connection.R |only assertive-0.3-0/assertive/R/internal-string.R |only assertive-0.3-0/assertive/R/is-a-type.R |only assertive-0.3-0/assertive/R/is-atomic-recursive-vector.R |only assertive-0.3-0/assertive/R/is-binding.R |only assertive-0.3-0/assertive/R/is-connection.R |only assertive-0.3-0/assertive/R/is-empty-scalar.R |only assertive-0.3-0/assertive/R/is-file.R |only assertive-0.3-0/assertive/R/is-in-range.R |only assertive-0.3-0/assertive/R/is-infinity-nan.R |only assertive-0.3-0/assertive/R/is-null.R |only assertive-0.3-0/assertive/R/is-other.R |only assertive-0.3-0/assertive/R/is-real-imaginary.R |only assertive-0.3-0/assertive/R/is-reflection.R |only assertive-0.3-0/assertive/R/is-set.R |only assertive-0.3-0/assertive/R/is-string-uk.R |only assertive-0.3-0/assertive/R/is-string-us.R |only assertive-0.3-0/assertive/R/is-string.R |only assertive-0.3-0/assertive/R/is-time.R |only assertive-0.3-0/assertive/R/is-type.R |only assertive-0.3-0/assertive/R/locale.R |only assertive-0.3-0/assertive/R/r-has-capability.R |only assertive-0.3-0/assertive/R/zzz.R |only assertive-0.3-0/assertive/inst/po |only assertive-0.3-0/assertive/man/as.character.file.Rd |only assertive-0.3-0/assertive/man/create_regex.Rd |only assertive-0.3-0/assertive/man/d.Rd |only assertive-0.3-0/assertive/man/is_current_r.Rd |only assertive-0.3-0/assertive/man/locale_categories.Rd |only assertive-0.3-0/assertive/man/make_range_string.Rd |only assertive-0.3-0/assertive/man/matches_regex.Rd |only assertive-0.3-0/assertive/man/not_this_build.Rd |only assertive-0.3-0/assertive/man/not_this_os.Rd |only assertive-0.3-0/assertive/man/recycle.Rd |only assertive-0.3-0/assertive/man/rstudio_version_info.Rd |only assertive-0.3-0/assertive/man/strip_invalid_chars.Rd |only assertive-0.3-0/assertive/man/warn_about_file.access_under_windows.Rd |only assertive-0.3-0/assertive/po |only assertive-0.3-0/assertive/tests/testthat/test-has.R |only assertive-0.3-0/assertive/tests/testthat/test-internal-string.R |only assertive-0.3-0/assertive/tests/testthat/test-is-a-type.R |only assertive-0.3-0/assertive/tests/testthat/test-is-atomic-recursive-vector.R |only assertive-0.3-0/assertive/tests/testthat/test-is-connection.R |only assertive-0.3-0/assertive/tests/testthat/test-is-empty-scalar.R |only assertive-0.3-0/assertive/tests/testthat/test-is-file.R |only assertive-0.3-0/assertive/tests/testthat/test-is-in-range.R |only assertive-0.3-0/assertive/tests/testthat/test-is-na-nan-null.R |only assertive-0.3-0/assertive/tests/testthat/test-is-other.R |only assertive-0.3-0/assertive/tests/testthat/test-is-real-imaginary.R |only assertive-0.3-0/assertive/tests/testthat/test-is-reflection.R |only assertive-0.3-0/assertive/tests/testthat/test-is-string-uk.R |only assertive-0.3-0/assertive/tests/testthat/test-is-string-us.R |only assertive-0.3-0/assertive/tests/testthat/test-is-string.R |only assertive-0.3-0/assertive/tests/testthat/test-is-time.R |only assertive-0.3-0/assertive/tests/testthat/test-is-type.R |only assertive-0.3-0/assertive/tests/testthat/test-is-valid-variable-name.R |only assertive-0.3-0/assertive/tests/testthat/test-r-has-capabilities.R |only assertive-0.3-1/assertive/DESCRIPTION | 33 assertive-0.3-1/assertive/MD5 | 338 ++++------ assertive-0.3-1/assertive/NAMESPACE | 194 +++++ assertive-0.3-1/assertive/NEWS | 1 assertive-0.3-1/assertive/R/assertive-package.R | 88 -- assertive-0.3-1/assertive/R/exports-base.R |only assertive-0.3-1/assertive/R/exports-code.R |only assertive-0.3-1/assertive/R/exports-data-uk.R |only assertive-0.3-1/assertive/R/exports-data-us.R |only assertive-0.3-1/assertive/R/exports-data.R |only assertive-0.3-1/assertive/R/exports-datetimes.R |only assertive-0.3-1/assertive/R/exports-files.R |only assertive-0.3-1/assertive/R/exports-matrices.R |only assertive-0.3-1/assertive/R/exports-models.R |only assertive-0.3-1/assertive/R/exports-numbers.R |only assertive-0.3-1/assertive/R/exports-properties.R |only assertive-0.3-1/assertive/R/exports-reflection.R |only assertive-0.3-1/assertive/R/exports-sets.R |only assertive-0.3-1/assertive/R/exports-strings.R |only assertive-0.3-1/assertive/R/exports-types.R |only assertive-0.3-1/assertive/R/imports.R | 187 ----- assertive-0.3-1/assertive/README.md | 255 +++---- assertive-0.3-1/assertive/man/DIM.Rd | 6 assertive-0.3-1/assertive/man/Truth.Rd | 2 assertive-0.3-1/assertive/man/are_identical.Rd | 35 - assertive-0.3-1/assertive/man/are_same_length.Rd | 42 - assertive-0.3-1/assertive/man/assert_engine.Rd | 2 assertive-0.3-1/assertive/man/assert_is_all_of.Rd | 26 assertive-0.3-1/assertive/man/assertionError.Rd |only assertive-0.3-1/assertive/man/bapply.Rd | 2 assertive-0.3-1/assertive/man/call_and_name.Rd | 2 assertive-0.3-1/assertive/man/cause.Rd | 2 assertive-0.3-1/assertive/man/changes.Rd | 100 -- assertive-0.3-1/assertive/man/character_to_list_of_integer_vectors.Rd | 23 assertive-0.3-1/assertive/man/coerce_to.Rd | 2 assertive-0.3-1/assertive/man/dont_stop.Rd | 2 assertive-0.3-1/assertive/man/false.Rd | 4 assertive-0.3-1/assertive/man/get_name_in_parent.Rd | 2 assertive-0.3-1/assertive/man/has_any_attributes.Rd | 21 assertive-0.3-1/assertive/man/has_arg.Rd | 34 - assertive-0.3-1/assertive/man/has_attributes.Rd | 32 assertive-0.3-1/assertive/man/has_cols.Rd | 34 - assertive-0.3-1/assertive/man/has_dims.Rd | 24 assertive-0.3-1/assertive/man/has_duplicates.Rd | 29 assertive-0.3-1/assertive/man/has_names.Rd | 51 - assertive-0.3-1/assertive/man/has_terms.Rd | 27 assertive-0.3-1/assertive/man/is2.Rd | 2 assertive-0.3-1/assertive/man/is_array.Rd | 34 - assertive-0.3-1/assertive/man/is_atomic.Rd | 62 - assertive-0.3-1/assertive/man/is_batch_mode.Rd | 27 assertive-0.3-1/assertive/man/is_binding_locked.Rd | 46 - assertive-0.3-1/assertive/man/is_cas_number.Rd | 50 - assertive-0.3-1/assertive/man/is_character.Rd | 102 --- assertive-0.3-1/assertive/man/is_class.Rd | 29 assertive-0.3-1/assertive/man/is_complex.Rd | 40 - assertive-0.3-1/assertive/man/is_connection.Rd | 146 ---- assertive-0.3-1/assertive/man/is_credit_card_number.Rd | 72 -- assertive-0.3-1/assertive/man/is_data.frame.Rd | 31 assertive-0.3-1/assertive/man/is_data.table.Rd |only assertive-0.3-1/assertive/man/is_date.Rd |only assertive-0.3-1/assertive/man/is_date_string.Rd | 40 - assertive-0.3-1/assertive/man/is_debugged.Rd | 24 assertive-0.3-1/assertive/man/is_diagonal_matrix.Rd |only assertive-0.3-1/assertive/man/is_dir.Rd | 27 assertive-0.3-1/assertive/man/is_divisible_by.Rd | 56 - assertive-0.3-1/assertive/man/is_email_address.Rd | 60 - assertive-0.3-1/assertive/man/is_empty.Rd | 110 --- assertive-0.3-1/assertive/man/is_empty_character.Rd |only assertive-0.3-1/assertive/man/is_empty_file.Rd | 37 - assertive-0.3-1/assertive/man/is_empty_model.Rd | 36 - assertive-0.3-1/assertive/man/is_environment.Rd | 29 assertive-0.3-1/assertive/man/is_equal_to.Rd |only assertive-0.3-1/assertive/man/is_error_free.Rd | 17 assertive-0.3-1/assertive/man/is_executable_file.Rd | 46 - assertive-0.3-1/assertive/man/is_existing.Rd | 40 - assertive-0.3-1/assertive/man/is_existing_file.Rd | 36 - assertive-0.3-1/assertive/man/is_factor.Rd | 33 assertive-0.3-1/assertive/man/is_finite.Rd | 55 - assertive-0.3-1/assertive/man/is_function.Rd | 38 - assertive-0.3-1/assertive/man/is_hex_color.Rd | 49 - assertive-0.3-1/assertive/man/is_honorific.Rd | 44 - assertive-0.3-1/assertive/man/is_identity_matrix.Rd |only assertive-0.3-1/assertive/man/is_if_condition.Rd | 36 - assertive-0.3-1/assertive/man/is_in_past.Rd | 63 - assertive-0.3-1/assertive/man/is_in_range.Rd | 129 --- assertive-0.3-1/assertive/man/is_inherited_from.Rd | 30 assertive-0.3-1/assertive/man/is_integer.Rd | 38 - assertive-0.3-1/assertive/man/is_ip_address.Rd | 45 - assertive-0.3-1/assertive/man/is_isbn_code.Rd | 62 - assertive-0.3-1/assertive/man/is_language.Rd | 60 - assertive-0.3-1/assertive/man/is_leaf.Rd | 23 assertive-0.3-1/assertive/man/is_library.Rd | 25 assertive-0.3-1/assertive/man/is_list.Rd | 28 assertive-0.3-1/assertive/man/is_loaded.Rd | 28 assertive-0.3-1/assertive/man/is_logical.Rd | 39 - assertive-0.3-1/assertive/man/is_lower_triangular_matrix.Rd |only assertive-0.3-1/assertive/man/is_nan.Rd | 40 - assertive-0.3-1/assertive/man/is_null.Rd | 48 - assertive-0.3-1/assertive/man/is_numeric.Rd | 40 - assertive-0.3-1/assertive/man/is_numeric_string.Rd |only assertive-0.3-1/assertive/man/is_on_os_path.Rd | 29 assertive-0.3-1/assertive/man/is_package_current.Rd | 34 - assertive-0.3-1/assertive/man/is_qr.Rd | 27 assertive-0.3-1/assertive/man/is_r.Rd | 105 --- assertive-0.3-1/assertive/man/is_r_current.Rd |only assertive-0.3-1/assertive/man/is_raster.Rd | 34 - assertive-0.3-1/assertive/man/is_raw.Rd | 41 - assertive-0.3-1/assertive/man/is_real.Rd | 65 - assertive-0.3-1/assertive/man/is_relistable.Rd | 27 assertive-0.3-1/assertive/man/is_rstudio_current.Rd | 23 assertive-0.3-1/assertive/man/is_rstudio_desktop.Rd | 24 assertive-0.3-1/assertive/man/is_s4.Rd | 33 assertive-0.3-1/assertive/man/is_set_equal.Rd | 76 -- assertive-0.3-1/assertive/man/is_single_character.Rd | 38 - assertive-0.3-1/assertive/man/is_square_matrix.Rd |only assertive-0.3-1/assertive/man/is_symmetric_matrix.Rd | 31 assertive-0.3-1/assertive/man/is_table.Rd | 27 assertive-0.3-1/assertive/man/is_tbl.Rd |only assertive-0.3-1/assertive/man/is_try_error.Rd |only assertive-0.3-1/assertive/man/is_ts.Rd | 35 - assertive-0.3-1/assertive/man/is_uk_car_licence.Rd | 75 -- assertive-0.3-1/assertive/man/is_uk_national_insurance_number.Rd | 56 - assertive-0.3-1/assertive/man/is_uk_postcode.Rd | 44 - assertive-0.3-1/assertive/man/is_uk_telephone_number.Rd | 42 - assertive-0.3-1/assertive/man/is_unsorted.Rd | 44 - assertive-0.3-1/assertive/man/is_us_social_security_number.Rd |only assertive-0.3-1/assertive/man/is_us_telephone_number.Rd | 55 - assertive-0.3-1/assertive/man/is_us_zip_code.Rd | 54 - assertive-0.3-1/assertive/man/is_valid_r_code.Rd | 27 assertive-0.3-1/assertive/man/is_valid_variable_name.Rd | 48 - assertive-0.3-1/assertive/man/is_whole_number.Rd | 50 - assertive-0.3-1/assertive/man/is_windows.Rd | 126 +-- assertive-0.3-1/assertive/man/is_xxx_for_decimal_point.Rd | 81 -- assertive-0.3-1/assertive/man/is_zero_matrix.Rd |only assertive-0.3-1/assertive/man/merge_dots_with_list.Rd | 2 assertive-0.3-1/assertive/man/n_elements.Rd | 6 assertive-0.3-1/assertive/man/na.Rd | 4 assertive-0.3-1/assertive/man/parenthesize.Rd | 2 assertive-0.3-1/assertive/man/r_can_find_tools.Rd | 46 - assertive-0.3-1/assertive/man/r_has_jpeg_capability.Rd | 104 --- assertive-0.3-1/assertive/man/set_cause.Rd | 2 assertive-0.3-1/assertive/man/strip_attributes.Rd | 2 assertive-0.3-1/assertive/man/sys_get_locale.Rd | 36 - assertive-0.3-1/assertive/man/use_first.Rd | 2 assertive-0.3-1/assertive/tests/testthat/test-assertive-contents.R |only 225 files changed, 872 insertions(+), 4437 deletions(-)