Title: Steady and Unsteady Open-Channel Flow Computation
Description: A tool for undergraduate and graduate courses in open-channel hydraulics.
Provides functions for computing normal and critical depths, steady-state
water surface profiles (e.g. backwater curves) and unsteady flow
computations (e.g. flood wave routing).
Author: Michael C Koohafkan [aut, cre]
Maintainer: Michael C Koohafkan <michael.koohafkan@gmail.com>
Diff between rivr versions 0.9.2 dated 2015-04-01 and 1.0 dated 2015-10-11
DESCRIPTION | 14 ++--- MD5 | 45 +++++++++------- NAMESPACE | 15 ++++- R/graduallyvariedflow_v2.r | 94 +++++++++++++++++++---------------- R/rivr-methods.r |only R/route_wave_v4.r | 36 +++++++++---- R/zzz.r |only build/vignette.rds |binary inst/doc/quickstart.R | 4 + inst/doc/quickstart.Rmd | 24 ++++++++ inst/doc/quickstart.html | 102 +++++++++++++++++++++++++++++++++----- inst/doc/technical-vignette.R |only inst/doc/technical-vignette.Rmd |only inst/doc/technical-vignette.html |only man/channel_geom.Rd | 2 man/compute_profile.Rd | 2 man/conveyance.Rd | 2 man/critical_depth.Rd | 2 man/froude.Rd | 2 man/normal_depth.Rd | 2 man/rivr-package.Rd | 9 --- man/route_wave.Rd | 2 man/waterolympics.Rd | 2 src/rivmech_characteristic_v7.cpp | 20 ++++++- vignettes/channeldiagram.png |only vignettes/quickstart.Rmd | 24 ++++++++ vignettes/technical-vignette.Rmd |only 27 files changed, 292 insertions(+), 111 deletions(-)
Title: PRIM Survival Regression Classification
Description: Performs a unified treatment of Bump Hunting by Patient Rule Induction Method (PRIM) in Survival, Regression and Classification settings (SRC). The current version is a development release that only implements the case of a survival response. New features will be added soon as they are available.
Author: Jean-Eudes Dazard [aut, cre], Michael Choe [ctb], Michael LeBlanc [ctb], Alberto Santana [ctb]
Maintainer: Jean-Eudes Dazard <jxd101@case.edu>
Diff between PRIMsrc versions 0.6.1 dated 2015-10-11 and 0.6.2 dated 2015-10-11
PRIMsrc-0.6.1/PRIMsrc/inst/doc/PRIMsrc_0.6.1.pdf |only PRIMsrc-0.6.2/PRIMsrc/DESCRIPTION | 8 PRIMsrc-0.6.2/PRIMsrc/MD5 | 8 PRIMsrc-0.6.2/PRIMsrc/R/PRIMsrc.r | 22 - PRIMsrc-0.6.2/PRIMsrc/inst/NEWS | 268 +++++++++++------------ PRIMsrc-0.6.2/PRIMsrc/inst/doc/PRIMsrc_0.6.2.pdf |only 6 files changed, 153 insertions(+), 153 deletions(-)
Title: Hybrid Bayesian Networks Using R and JAGS
Description: Facilities for easy implementation of hybrid Bayesian networks
using R. Bayesian networks are directed acyclic graphs representing joint
probability distributions, where each node represents a random variable and
each edge represents conditionality. The full joint distribution is
therefore factorized as a product of conditional densities, where each node
is assumed to be independent of its non-descendents given information on its
parent nodes. Since exact, closed-form algorithms are computationally
burdensome for inference within hybrid networks that contain a combination
of continuous and discrete nodes, particle-based approximation techniques
like Markov Chain Monte Carlo are popular. We provide a user-friendly
interface to constructing these networks and running inference using the 'rjags' package.
Econometric analyses (maximum expected utility under competing policies,
value of information) involving decision and utility nodes are also
supported.
Author: Jarrod E. Dalton <daltonj@ccf.org> and Benjamin Nutter <benjamin.nutter@gmail.com>
Maintainer: Benjamin Nutter <benjamin.nutter@gmail.com>
Diff between HydeNet versions 0.9.0 dated 2015-07-02 and 0.10.0 dated 2015-10-11
DESCRIPTION | 16 MD5 | 120 ++- NEWS | 27 R/HydeNetwork.R | 181 ++-- R/HydePosterior.R | 9 R/HydeUtilities.R | 53 + R/PolicyMatrix.R | 21 R/bindPosterior.R | 43 - R/compileDecisionModel.R | 157 +++- R/compileJagsModel.R | 84 -- R/cpt.R | 155 +--- R/inputCPT.R | 46 - R/modelToNode.R | 15 R/plot.HydeNetwork.R | 16 R/rToJags.R | 2 R/setNode.R | 150 ++-- R/setNodeModels.R | 51 - R/writeJagsModel.R | 8 README.md | 7 build/vignette.rds |binary data/jagsFunctions.RData |binary inst/doc/DecisionNetworks.R | 11 inst/doc/DecisionNetworks.Rmd | 30 inst/doc/DecisionNetworks.html | 981 +++++++++++--------------- inst/doc/GettingStartedWithHydeNet.R | 12 inst/doc/GettingStartedWithHydeNet.Rmd | 29 inst/doc/GettingStartedWithHydeNet.html | 723 ++++++------------- inst/doc/HydeNetPlots.R | 76 +- inst/doc/HydeNetPlots.Rmd | 42 - inst/doc/HydeNetPlots.html | 501 ++++--------- inst/doc/WorkingWithHydeNetObjects.R | 8 inst/doc/WorkingWithHydeNetObjects.Rmd | 32 inst/doc/WorkingWithHydeNetObjects.html | 1187 ++++++++++++-------------------- inst/img |only man/HydeNetwork.Rd | 6 man/HydePosterior.Rd | 14 man/compileDecisionModel.Rd | 11 man/setNode.Rd | 18 man/setNodeModels.Rd | 2 tests |only vignettes/DecisionNetworks.Rmd | 30 vignettes/GettingStartedWithHydeNet.Rmd | 29 vignettes/HydeNetPlots.Rmd | 42 - vignettes/WorkingWithHydeNetObjects.Rmd | 32 vignettes/vignette_images |only 45 files changed, 2198 insertions(+), 2779 deletions(-)
Title: Estimation, Simulation and Visualization of Hierarchical
Archimedean Copulae (HAC)
Description: Package provides the estimation of the structure and the parameters, sampling methods and structural plots of Hierarchical Archimedean Copulae (HAC).
Author: Ostap Okhrin <ostap.okhrin@tu-dresden.de> and Alexander Ristig <alexander.ristig@univie.ac.at>
Maintainer: Alexander Ristig <alexander.ristig@univie.ac.at>
Diff between HAC versions 1.0-3 dated 2015-05-12 and 1.0-4 dated 2015-10-11
DESCRIPTION | 14 - MD5 | 24 +-- NAMESPACE | 5 R/estimate.r | 2 build/vignette.rds |binary inst/ChangeLog | 12 - inst/doc/HAC.R | 333 +++++++++++++++++++++++------------------------ inst/doc/HAC.Rnw | 86 +++++------- inst/doc/HAC.pdf |binary man/estimate.copula.Rd | 4 vignettes/HAC-speed2.pdf |binary vignettes/HAC.Rnw | 86 +++++------- vignettes/ref.bib | 34 ++++ 13 files changed, 307 insertions(+), 293 deletions(-)
Title: Selecting Variables in Regression Models
Description: A simple method
to select the best model or best subset of variables using
different types of data (binary, Gaussian or Poisson) and
applying it in different contexts (parametric or non-parametric).
Author: Marta Sestelo [aut, cre],
Nora M. Villanueva [aut],
Javier Roca-Pardinas [aut]
Maintainer: Marta Sestelo <sestelo@uvigo.es>
Diff between FWDselect versions 2.0 dated 2015-05-17 and 2.0.1 dated 2015-10-11
DESCRIPTION | 10 +++++----- MD5 | 24 ++++++++++++------------ NAMESPACE | 12 +++++++++++- NEWS | 16 +++++++++++++--- R/FWDselect.R | 2 +- R/plot.qselection.R | 2 ++ R/qselection.R | 8 +++++++- R/selection.R | 31 ++++++++++++++++++++++--------- R/test.R | 40 ++++++++++++++++++++++++++++++---------- man/FWDselect.Rd | 2 +- man/qselection.Rd | 8 +++++++- man/selection.Rd | 8 +++++++- man/test.Rd | 14 +++++++++++--- 13 files changed, 129 insertions(+), 48 deletions(-)
Title: Tools for Descriptive Statistics
Description: A collection of basic statistic functions and convenience wrappers for efficiently describing data. The author's intention was to create a toolbox, which facilitates the (notoriously time consuming) first descriptive tasks in data analysis, consisting of calculating descriptive statistics, drawing graphical summaries and reporting the results. The package contains furthermore functions to produce documents using MS Word (or PowerPoint) and functions to import data from Excel. Many of the included functions can be found scattered in other packages and other sources written partly by Titans of R. The reason for collecting them here, was primarily to have them consolidated in ONE instead of dozens of packages (which themselves might depend on other packages which are not needed at all), and to provide a common and consistent interface as far as function and arguments naming, NA handling, recycling rules etc. are concerned. Google style guides were used as naming rules (in absence of convincing alternatives). The 'camel style' was consequently applied to functions borrowed from contributed R packages as well.
Author: Andri Signorell. Includes R source code and/or documentation previously published by (in alphabetical order): Ken Aho, Nanina Anderegg, Tomas Aragon, Antti Arppe, Adrian Baddeley, Ben Bolker, Frederico Caeiro, Stephane Champely, Daniel Chessel, Leanne Chhay, Clint Cummins, Michael Dewey, Harold C. Doran, Stephane Dray, Charles Dupont, Dirk Eddelbuettel, Jeff Enos, Claus Ekstrom, Martin Elff, Richard W. Farebrother, John Fox, Michael Friendly, Tal Galili, Matthias Gamer, Joseph L. Gastwirth, Yulia R. Gel, Juergen Gross, Gabor Grothendieck, Frank E. Harrell Jr, Richard Heiberger, Michael Hoehle, Christian W. Hoffmann, Torsten Hothorn, Markus Huerzeler, Wallace W. Hui, Pete Hurd, Rob J. Hyndman, Pablo J. Villacorta Iglesias, Matthias Kohl, Mikko Korpela, Max Kuhn, Detlew Labes, Friederich Leisch, Jim Lemon, Dong Li, Martin Maechler, Arni Magnusson, Daniel Malter, George Marsaglia, John Marsaglia, Alina Matei, David Meyer, Weiwen Miao, Giovanni Millo, Yongyi Min, David Mitchell, Markus Naepflin, Daniel Navarro, Klaus Nordhausen, Derek Ogle, Hong Ooi, Nick Parsons, Sandrine Pavoine, Tony Plate, Roland Rapold, William Revelle, Tyler Rinker, Brian D. Ripley, Caroline Rodriguez, Venkatraman E. Seshan, Greg Snow, Michael Smithson, Werner A. Stahel, Mark Stevenson, Terry Therneau, Yves Tille, Adrian Trapletti, Kevin Ushey, Jeremy VanDerWal, Bill Venables, John Verzani, Gregory R. Warnes, Stefan Wellek, Rand R. Wilcox, Peter Wolf, Daniel Wollschlaeger, Thomas Yee, Achim Zeileis
Maintainer: Andri Signorell <andri@signorell.net>
Diff between DescTools versions 0.99.13 dated 2015-08-24 and 0.99.14 dated 2015-10-11
DESCRIPTION | 8 MD5 | 73 - NAMESPACE | 13 NEWS | 37 R/DescTools.r | 2879 +++------------------------------------- R/FastDesc.R | 389 +++++ R/SpecialPlots.r |only R/Tables.r |only data/d.whisky.rda |only demo/plots.R | 16 inst/doc/DescToolsCompanion.pdf |binary inst/doc/TablesInR.pdf |binary man/Assocs.Rd | 4 man/Canvas.Rd | 9 man/ColToRgb.Rd | 10 man/CramerV.Rd | 10 man/Desc.table.Rd | 26 man/DescTools-package.Rd | 5 man/GCD.Rd | 2 man/Gini.Rd | 3 man/HotellingsT.Rd | 2 man/PDFManual.Rd | 6 man/PercTable.Rd | 18 man/Permn.Rd | 18 man/PlotBubble.Rd | 24 man/PlotDesc.Rd | 10 man/PlotFdist.Rd | 3 man/PlotHorizBar.Rd | 2 man/PlotMiss.Rd |only man/PlotQQ.Rd | 18 man/PlotRCol.Rd | 6 man/RgbToCol.Rd | 11 man/SmoothSpline.Rd |only man/Stamp.Rd | 18 man/TOne.Rd | 9 man/d.whisky.Rd |only man/identify.formula.Rd | 12 man/like.Rd | 3 man/lines.loess.Rd | 18 src/aux_fct.cpp | 7 tests |only 41 files changed, 907 insertions(+), 2762 deletions(-)
Title: Robust Selection of Cluster Number K
Description: Facilitates optimal clustering of a data set. Provides a framework to run a wide range of clustering algorithms to determine the optimal number (k) of clusters in the data. Then analyzes the cluster assignments from each clustering algorithm to identify samples that repeatedly classify to the same group. We call these 'core clusters', providing a basis for later class discovery.
Author: Albert Chen [aut, cre], Timothy E Sweeney [aut], Olivier Gevaert [ths]
Maintainer: Albert Chen <acc2015@stanford.edu>
Diff between COMMUNAL versions 1.0 dated 2015-02-11 and 1.1.0 dated 2015-10-11
COMMUNAL-1.0/COMMUNAL/vignettes/COMMUNAL-001.pdf |only COMMUNAL-1.1.0/COMMUNAL/DESCRIPTION | 14 COMMUNAL-1.1.0/COMMUNAL/MD5 | 51 COMMUNAL-1.1.0/COMMUNAL/NAMESPACE | 8 COMMUNAL-1.1.0/COMMUNAL/R/communal.R | 738 ++++++++----- COMMUNAL-1.1.0/COMMUNAL/R/extract_core.R | 9 COMMUNAL-1.1.0/COMMUNAL/R/plot_range_3d.R | 418 +++++-- COMMUNAL-1.1.0/COMMUNAL/R/test_range.R | 106 + COMMUNAL-1.1.0/COMMUNAL/build/vignette.rds |binary COMMUNAL-1.1.0/COMMUNAL/data/BRCA.100.RData |binary COMMUNAL-1.1.0/COMMUNAL/data/BRCA.results.RData |binary COMMUNAL-1.1.0/COMMUNAL/inst/CITATION |only COMMUNAL-1.1.0/COMMUNAL/inst/doc/COMMUNAL.R | 227 +-- COMMUNAL-1.1.0/COMMUNAL/inst/doc/COMMUNAL.Rnw | 302 ++--- COMMUNAL-1.1.0/COMMUNAL/inst/doc/COMMUNAL.pdf |binary COMMUNAL-1.1.0/COMMUNAL/man/BRCA.results.Rd | 7 COMMUNAL-1.1.0/COMMUNAL/man/COMMUNAL-class.Rd | 2 COMMUNAL-1.1.0/COMMUNAL/man/COMMUNAL-package.Rd | 31 COMMUNAL-1.1.0/COMMUNAL/man/COMMUNAL.Rd | 212 ++- COMMUNAL-1.1.0/COMMUNAL/man/clusterKeys.Rd | 13 COMMUNAL-1.1.0/COMMUNAL/man/clusterRange.Rd | 118 +- COMMUNAL-1.1.0/COMMUNAL/man/examineCounts.Rd | 6 COMMUNAL-1.1.0/COMMUNAL/man/measureMonotonic.Rd |only COMMUNAL-1.1.0/COMMUNAL/man/plotRange3D.Rd | 51 COMMUNAL-1.1.0/COMMUNAL/man/returnCore.Rd | 6 COMMUNAL-1.1.0/COMMUNAL/man/testAlgsMinSize.Rd |only COMMUNAL-1.1.0/COMMUNAL/vignettes/COMMUNAL-concordance.tex |only COMMUNAL-1.1.0/COMMUNAL/vignettes/COMMUNAL.Rnw | 302 ++--- COMMUNAL-1.1.0/COMMUNAL/vignettes/framed.sty |only COMMUNAL-1.1.0/COMMUNAL/vignettes/snapshot.png |only 30 files changed, 1511 insertions(+), 1110 deletions(-)
Title: Nested Block Designs for Unstructured Treatments
Description: Nested block designs for unstructured treatment sets where blocks
can be repeatedly nested and treatments can have different levels of
replication. Blocks are optimized hierarchically from the top down with each set of
nested blocks optimized within the levels of any existing higher-level blocks.
Block sizes are equal if the number of blocks exactly divides the number of plots,
otherwise they differ by at most one plot. The design output is a data
table giving a randomised allocation of treatments to blocks together with
a plan table showing treatments in blocks and a set of blocks-by-treatments
incidence matrices, one for each blocks stratum.
Author: R. N. Edmondson
Maintainer: Rodney Edmondson <rodney.edmondson@gmail.com>
Diff between blocksdesign versions 1.7 dated 2015-08-21 and 1.8 dated 2015-10-11
DESCRIPTION | 8 MD5 | 8 R/blocks.r | 503 +++++++++++++++++++++++++------------------------------ R/upper_bounds.r | 25 +- man/blocks.Rd | 33 +-- 5 files changed, 267 insertions(+), 310 deletions(-)
Title: Sets, Generalized Sets, Customizable Sets and Intervals
Description: Data structures and basic operations for ordinary sets,
generalizations such as fuzzy sets, multisets, and
fuzzy multisets, customizable sets, and intervals.
Author: David Meyer [aut, cre],
Kurt Hornik [aut],
Christian Buchta [ctb]
Maintainer: David Meyer <David.Meyer@R-project.org>
Diff between sets versions 1.0-15 dated 2015-07-08 and 1.0-16 dated 2015-10-11
sets-1.0-15/sets/inst/doc/sets.bib |only sets-1.0-16/sets/DESCRIPTION | 6 +++--- sets-1.0-16/sets/MD5 | 18 +++++++++--------- sets-1.0-16/sets/NAMESPACE | 10 ++++++++++ sets-1.0-16/sets/build/vignette.rds |binary sets-1.0-16/sets/data/fuzzy_docs.rda |binary sets-1.0-16/sets/inst/NEWS.Rd | 13 ++++++++++--- sets-1.0-16/sets/inst/doc/sets.Rnw | 2 +- sets-1.0-16/sets/inst/doc/sets.pdf |binary sets-1.0-16/sets/man/sets-internal.Rd |only sets-1.0-16/sets/vignettes/sets.Rnw | 2 +- 11 files changed, 34 insertions(+), 17 deletions(-)
Title: Data Structures and Algorithms for Relations
Description: Data structures and algorithms for k-ary relations with
arbitrary domains, featuring relational algebra, predicate functions,
and fitters for consensus relations.
Author: David Meyer [aut],
Kurt Hornik [aut, cre],
Christian Buchta [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between relations versions 0.6-5 dated 2015-04-30 and 0.6-6 dated 2015-10-11
DESCRIPTION | 8 ++-- MD5 | 36 ++++++++++----------- R/algebra.R | 2 - R/charfun.R | 4 +- R/domain.R | 2 - R/dual.R | 2 - R/getters.R | 2 - R/graph.R | 14 ++++---- R/relation.R | 8 ++-- R/utilities.R | 2 - build/vignette.rds |binary data/Cetacea.rda |binary data/Felines.rda |binary data/SVM_Benchmarking_Classification.rda |binary data/SVM_Benchmarking_Classification_Consensus.rda |binary data/SVM_Benchmarking_Regression.rda |binary data/SVM_Benchmarking_Regression_Consensus.rda |binary inst/NEWS.Rd | 27 +++++++++++++++ inst/doc/relations.pdf |binary 19 files changed, 66 insertions(+), 41 deletions(-)
Title: Matplotlib Default Color Map
Description: Port of the new 'matplotlib' color maps ('viridis' - the default -,
'magma', 'plasma' and 'inferno') to 'R'. 'matplotlib' <http://matplotlib.org/>
is a popular plotting library for 'python'. These color maps are designed in
such a way that they will analytically be perfectly perceptually-uniform,
both in regular form and also when converted to black-and-white. They are
also designed to be perceived by readers with the most common form of color
blindness.
Author: Simon Garnier [aut, cre],
Noam Ross [ctb, cph] (Continuous scale),
Bob Rudis [ctb, cph] (Combined scales)
Maintainer: Simon Garnier <garnier@njit.edu>
Diff between viridis versions 0.3 dated 2015-10-11 and 0.3.1 dated 2015-10-11
DESCRIPTION | 22 ++++++++++++---------- MD5 | 6 +++--- README.md | 3 +++ inst/doc/intro-to-viridis.html | 6 +++--- 4 files changed, 21 insertions(+), 16 deletions(-)
Title: Quantification of Pinned Microbial Cultures
Description: The goal of this package is to allow users to robustly
and quickly grid and quantify sizes of pinned colonies in plate images.
gitter works by first finding the grid of colonies from a preprocessed image and then locating the bounds of each colony separately.
It includes several image pre-processing techniques, such
as autorotation of plates, noise removal, contrast adjustment and image
resizing.
Author: Omar Wagih, Leopold Parts
Maintainer: Omar Wagih <wagih@ebi.ac.uk>
Diff between gitter versions 1.1 dated 2015-10-09 and 1.1.1 dated 2015-10-11
gitter-1.1.1/gitter/CHANGES | 6 ++++++ gitter-1.1.1/gitter/DESCRIPTION | 15 +++++++-------- gitter-1.1.1/gitter/MD5 | 18 +++++++++--------- gitter-1.1.1/gitter/R/Help.R |only gitter-1.1.1/gitter/R/Main.R |only gitter-1.1.1/gitter/R/Peaks.R |only gitter-1.1.1/gitter/build/BUILD.R | 2 +- gitter-1.1.1/gitter/man/gitter.Rd | 2 +- gitter-1.1.1/gitter/man/gitter.batch.Rd | 2 +- gitter-1.1.1/gitter/man/gitter.demo.Rd | 2 +- gitter-1.1/gitter/R/help.r |only gitter-1.1/gitter/R/main.r |only gitter-1.1/gitter/R/peaks.r |only 13 files changed, 26 insertions(+), 21 deletions(-)
Title: Another Object Orientation System
Description: Another implementation of object-orientation in R. It provides
syntactic sugar for the S4 class system and two alternative new
implementations. One is an experimental version built around S4
and the other one makes it more convenient to work with lists as objects.
Author: Sebastian Warnholz [aut, cre]
Maintainer: Sebastian Warnholz <wahani@gmail.com>
Diff between aoos versions 0.3.0 dated 2015-08-06 and 0.4.0 dated 2015-10-11
aoos-0.3.0/aoos/R/Accessor.R |only aoos-0.3.0/aoos/R/Binary.R |only aoos-0.3.0/aoos/R/Infix.R |only aoos-0.3.0/aoos/R/Private.R |only aoos-0.3.0/aoos/R/Show.R |only aoos-0.3.0/aoos/R/aoos.R |only aoos-0.3.0/aoos/R/defineClass.R |only aoos-0.3.0/aoos/R/defineRefClass.R |only aoos-0.3.0/aoos/R/helper.R |only aoos-0.3.0/aoos/R/packageStartupMessage.R |only aoos-0.3.0/aoos/R/public-interfaces.R |only aoos-0.3.0/aoos/R/retList.R |only aoos-0.3.0/aoos/tests/testthat/test-Accessor.R |only aoos-0.3.0/aoos/tests/testthat/test-Binary.R |only aoos-0.3.0/aoos/tests/testthat/test-Class.R |only aoos-0.3.0/aoos/tests/testthat/test-Infix.R |only aoos-0.3.0/aoos/tests/testthat/test-basics.R |only aoos-0.3.0/aoos/tests/testthat/test-inheritance.R |only aoos-0.3.0/aoos/tests/testthat/test-publicInterface.R |only aoos-0.3.0/aoos/tests/testthat/test-retList.R |only aoos-0.3.0/aoos/tests/testthat/test-self.R |only aoos-0.3.0/aoos/tests/testthat/test-summary.R |only aoos-0.4.0/aoos/DESCRIPTION | 25 +- aoos-0.4.0/aoos/MD5 | 106 ++++++----- aoos-0.4.0/aoos/NAMESPACE | 16 + aoos-0.4.0/aoos/NEWS | 63 +++++- aoos-0.4.0/aoos/R/DC-Binary.R |only aoos-0.4.0/aoos/R/DC-Show.R |only aoos-0.4.0/aoos/R/DC-aoos.R |only aoos-0.4.0/aoos/R/DC-defineClass.R |only aoos-0.4.0/aoos/R/DC-public-interfaces.R |only aoos-0.4.0/aoos/R/NAMESPACE.R | 7 aoos-0.4.0/aoos/R/RL-Infix.R |only aoos-0.4.0/aoos/R/RL-envHelper.R |only aoos-0.4.0/aoos/R/RL-retList.R |only aoos-0.4.0/aoos/R/S4-expressions.R |only aoos-0.4.0/aoos/R/S4-generics-test.R |only aoos-0.4.0/aoos/R/S4-generics.R |only aoos-0.4.0/aoos/R/S4-roxygen-parser.R |only aoos-0.4.0/aoos/R/S4-types.R |only aoos-0.4.0/aoos/R/S4RC-Accessor.R |only aoos-0.4.0/aoos/R/S4RC-Private.R |only aoos-0.4.0/aoos/R/S4RC-defineRefClass.R |only aoos-0.4.0/aoos/build/vignette.rds |binary aoos-0.4.0/aoos/inst/doc/Introduction.R | 3 aoos-0.4.0/aoos/inst/doc/Introduction.Rmd | 51 ++++- aoos-0.4.0/aoos/inst/doc/Introduction.html | 6 aoos-0.4.0/aoos/inst/doc/S4SyntacticSugar.R |only aoos-0.4.0/aoos/inst/doc/S4SyntacticSugar.Rmd |only aoos-0.4.0/aoos/inst/doc/S4SyntacticSugar.html |only aoos-0.4.0/aoos/inst/doc/aoosClasses.html | 4 aoos-0.4.0/aoos/inst/doc/performance.html | 26 +- aoos-0.4.0/aoos/inst/doc/referenceClasses.html | 4 aoos-0.4.0/aoos/inst/doc/retListClasses.html | 8 aoos-0.4.0/aoos/man/Accessor.Rd | 2 aoos-0.4.0/aoos/man/Binary.Rd | 2 aoos-0.4.0/aoos/man/Infix.Rd | 2 aoos-0.4.0/aoos/man/Private.Rd | 2 aoos-0.4.0/aoos/man/S4generics.Rd |only aoos-0.4.0/aoos/man/Show.Rd | 2 aoos-0.4.0/aoos/man/aoos.Rd | 6 aoos-0.4.0/aoos/man/defineClass.Rd | 2 aoos-0.4.0/aoos/man/defineRefClass.Rd | 2 aoos-0.4.0/aoos/man/envHelper.Rd | 2 aoos-0.4.0/aoos/man/genericTest.Rd |only aoos-0.4.0/aoos/man/grapes-type-grapes.Rd |only aoos-0.4.0/aoos/man/parser.Rd |only aoos-0.4.0/aoos/man/publicInterface.Rd | 2 aoos-0.4.0/aoos/man/retList.Rd | 24 +- aoos-0.4.0/aoos/tests/testthat/test-00-S4RC-defineRefClass.R |only aoos-0.4.0/aoos/tests/testthat/test-DC-Binary.R |only aoos-0.4.0/aoos/tests/testthat/test-DC-basics.R |only aoos-0.4.0/aoos/tests/testthat/test-DC-inheritance.R |only aoos-0.4.0/aoos/tests/testthat/test-DC-publicInterface.R |only aoos-0.4.0/aoos/tests/testthat/test-DC-self.R |only aoos-0.4.0/aoos/tests/testthat/test-DC-summary.R |only aoos-0.4.0/aoos/tests/testthat/test-RL-Infix.R |only aoos-0.4.0/aoos/tests/testthat/test-RL-retList.R |only aoos-0.4.0/aoos/tests/testthat/test-S4-generics.R |only aoos-0.4.0/aoos/tests/testthat/test-S4-types.R |only aoos-0.4.0/aoos/tests/testthat/test-S4RC-Accessor.R |only aoos-0.4.0/aoos/vignettes/Introduction.Rmd | 51 ++++- aoos-0.4.0/aoos/vignettes/S4SyntacticSugar.Rmd |only 83 files changed, 301 insertions(+), 117 deletions(-)
Title: Regular Expression Removal, Extraction, and Replacement Tools
Description: A collection of regular expression tools associated with
the 'qdap' package that may be useful outside of the context of
discourse analysis. Tools include
removal/extraction/replacement of abbreviations, dates, dollar
amounts, email addresses, hash tags, numbers, percentages,
citations, person tags, phone numbers, times, and zip codes.
Author: Jason Gray [ctb],
Tyler Rinker [aut, cre]
Maintainer: Tyler Rinker <tyler.rinker@gmail.com>
Diff between qdapRegex versions 0.5.0 dated 2015-08-16 and 0.5.1 dated 2015-10-11
DESCRIPTION | 18 +- MD5 | 16 +- NEWS | 10 + README.md | 246 ++++++++++++++++++++-------------------- data/regex_cheat.rda |binary data/regex_supplement.rda |binary data/regex_usa.rda |binary inst/CITATION | 4 tests/testthat/test-rm_number.R | 10 - 9 files changed, 162 insertions(+), 142 deletions(-)
Title: Analysis of Stable Matchings
Description: Implements structural estimators to correct for
the sample selection bias from observed outcomes in matching
markets. This includes one-sided matching of agents into
groups as well as two-sided matching of students to schools.
The package also contains R code for three matching algorithms:
the deferred-acceptance (or Gale-Shapley) algorithm for
stable marriage and college admissions problems, the
top-trading-cycles algorithm for house allocation and a
partitioning linear programme for the roommates problem.
Author: Thilo Klein
Maintainer: Thilo Klein <thilo@klein.uk>
Diff between matchingMarkets versions 0.1-6 dated 2015-10-06 and 0.1-7 dated 2015-10-11
matchingMarkets-0.1-6/matchingMarkets/NEWS |only matchingMarkets-0.1-6/matchingMarkets/vignettes/Sections/1_Introduction.Rnw |only matchingMarkets-0.1-6/matchingMarkets/vignettes/Sections/2_Example.Rnw |only matchingMarkets-0.1-6/matchingMarkets/vignettes/Sections/3_StructuralModel.Rnw |only matchingMarkets-0.1-6/matchingMarkets/vignettes/Sections/AppendixA.Rnw |only matchingMarkets-0.1-6/matchingMarkets/vignettes/Sections/AppendixC.Rnw |only matchingMarkets-0.1-6/matchingMarkets/vignettes/Sections/AppendixD.Rnw |only matchingMarkets-0.1-7/matchingMarkets/DESCRIPTION | 31 ++-- matchingMarkets-0.1-7/matchingMarkets/MD5 | 34 ++--- matchingMarkets-0.1-7/matchingMarkets/NEWS.md |only matchingMarkets-0.1-7/matchingMarkets/README.md |only matchingMarkets-0.1-7/matchingMarkets/inst/doc/matching.Rnw | 43 +----- matchingMarkets-0.1-7/matchingMarkets/inst/doc/matching.pdf |binary matchingMarkets-0.1-7/matchingMarkets/man/matchingMarkets-package.Rd | 3 matchingMarkets-0.1-7/matchingMarkets/vignettes/Sections/1_Introduction.tex |only matchingMarkets-0.1-7/matchingMarkets/vignettes/Sections/2_Example.tex |only matchingMarkets-0.1-7/matchingMarkets/vignettes/Sections/3_StructuralModel.tex |only matchingMarkets-0.1-7/matchingMarkets/vignettes/Sections/4_MonteCarloResults.Rnw | 35 ++--- matchingMarkets-0.1-7/matchingMarkets/vignettes/Sections/5_Application.Rnw | 6 matchingMarkets-0.1-7/matchingMarkets/vignettes/Sections/6_Conclusion.tex |only matchingMarkets-0.1-7/matchingMarkets/vignettes/Sections/AppendixA.tex |only matchingMarkets-0.1-7/matchingMarkets/vignettes/Sections/AppendixB.Rnw | 66 +++++----- matchingMarkets-0.1-7/matchingMarkets/vignettes/Sections/AppendixC.tex |only matchingMarkets-0.1-7/matchingMarkets/vignettes/Sections/AppendixD.tex |only matchingMarkets-0.1-7/matchingMarkets/vignettes/matching.Rnw | 43 +----- matchingMarkets-0.1-7/matchingMarkets/vignettes/matching.bib | 39 +++++ 26 files changed, 158 insertions(+), 142 deletions(-)
More information about matchingMarkets at CRAN
Permanent link
Title: Dockerize R Markdown Documents
Description: Dockerize R Markdown documents with support for Rabix.
Author: Miaozhu Li [ctb],
Tengfei Yin [ctb],
Nan Xiao [aut, cre]
Maintainer: Nan Xiao <nanx@uchicago.edu>
Diff between liftr versions 0.2 dated 2015-07-31 and 0.3 dated 2015-10-11
DESCRIPTION | 8 ++++---- MD5 | 23 ++++++++++++----------- NEWS.md | 11 +++++++++++ R/drender.R | 10 +++++++--- R/lift.R | 18 +++++++++++------- build/vignette.rds |binary inst/Dockerfile.Rmd | 4 +++- inst/cranpkg.Rmd |only inst/doc/liftr-intro.Rmd | 6 +++--- inst/doc/liftr-intro.html | 12 ++++++------ man/drender.Rd | 8 +++++--- man/lift.Rd | 4 ++-- vignettes/liftr-intro.Rmd | 6 +++--- 13 files changed, 67 insertions(+), 43 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-10-03 1.0.3
Title: Matplotlib Default Color Map
Description: Port of the new Matplotlib default color map ('viridis') to R.
This color map is designed in such a way that it will analytically be
perfectly perceptually-uniform, both in regular form and also when
converted to black-and-white. It is also designed to be perceived by
readers with the most common form of color blindness.
Author: Simon Garnier [aut, cre],
Noam Ross [ctb, cph] (Continuous scale),
Bob Rudis [ctb, cph] (Combined scales)
Maintainer: Simon Garnier <garnier@njit.edu>
Diff between viridis versions 0.2.5 dated 2015-09-14 and 0.3 dated 2015-10-11
DESCRIPTION | 14 - MD5 | 31 +- NAMESPACE | 4 R/scales.R | 192 +++++++++-------- R/viridis.R | 71 +++++- README.md | 35 +-- build/vignette.rds |binary data/viridis.map.rda |binary inst/doc/intro-to-viridis.R | 145 +++++++++---- inst/doc/intro-to-viridis.Rmd | 276 +++++++++++++++++++------ inst/doc/intro-to-viridis.html | 213 ++++++++++++------- man/scale_viridis.Rd | 25 +- man/viridis.Rd | 29 ++ man/viridis.map.Rd | 3 man/viridis_pal.Rd | 6 vignettes/intro-to-viridis.Rmd | 276 +++++++++++++++++++------ vignettes/us.tmax_nohads_ll_20150219_float.tif |only 17 files changed, 933 insertions(+), 387 deletions(-)
Title: Neo4j Driver for R
Description: Neo4j, a graph database, allows users to store their data as a property graph. A graph consists of nodes that are connected by relationships; both nodes and relationships can have properties, or key-value pairs. RNeo4j is Neo4j's R driver. It allows users to read and write data from and to Neo4j directly from their R environment by exposing an interface for interacting with nodes, relationships, paths, and more. Most notably, it allows users to retrieve Cypher query results as R data frames, where Cypher is Neo4j's graph query language. Visit <http://www.neo4j.com> to learn more about Neo4j.
Author: Nicole White
Maintainer: Nicole White <nicole@neo4j.com>
Diff between RNeo4j versions 1.5.1 dated 2015-09-11 and 1.6.0 dated 2015-10-11
DESCRIPTION | 8 +-- MD5 | 20 +++---- R/allShortestPaths.R | 2 R/cypherToList.R | 2 R/internal.R | 12 ++-- R/shortestPath.R | 2 man/allShortestPaths.Rd | 2 man/shortestPath.Rd | 2 tests/testthat/test-cypherToList.R | 39 +++++++++++++++ tests/testthat/test-nodes.R | 96 +++++++++++++++++++++++++++++++++---- tests/testthat/test-paths.R | 26 ++++++++-- 11 files changed, 176 insertions(+), 35 deletions(-)
Title: PRIM Survival Regression Classification
Description: Performs a unified treatment of Bump Hunting by Patient Rule Induction Method (PRIM) in Survival, Regression and Classification settings (SRC). The current version is a development release that only implements the case of a survival response. New features will be added soon as they are available.
Author: Jean-Eudes Dazard [aut, cre], Michael Choe [ctb], Michael LeBlanc [ctb], Alberto Santana [ctb]
Maintainer: Jean-Eudes Dazard <jxd101@case.edu>
Diff between PRIMsrc versions 0.6.0 dated 2015-09-16 and 0.6.1 dated 2015-10-11
PRIMsrc-0.6.0/PRIMsrc/data/Synthetic.5.rda |only PRIMsrc-0.6.0/PRIMsrc/inst/doc/PRIMsrc_0.6.0.pdf |only PRIMsrc-0.6.0/PRIMsrc/man/Synthetic.5-data.Rd |only PRIMsrc-0.6.1/PRIMsrc/DESCRIPTION | 8 PRIMsrc-0.6.1/PRIMsrc/MD5 | 52 PRIMsrc-0.6.1/PRIMsrc/R/PRIMsrc.internal.r | 1 PRIMsrc-0.6.1/PRIMsrc/R/PRIMsrc.r | 3036 ++++++++++---------- PRIMsrc-0.6.1/PRIMsrc/data/Synthetic.1b.rda |only PRIMsrc-0.6.1/PRIMsrc/data/Synthetic.4.rda |binary PRIMsrc-0.6.1/PRIMsrc/data/datalist | 2 PRIMsrc-0.6.1/PRIMsrc/inst/NEWS | 18 PRIMsrc-0.6.1/PRIMsrc/inst/doc/Abstract.JCB2016.pdf |binary PRIMsrc-0.6.1/PRIMsrc/inst/doc/PRIMsrc_0.6.1.pdf |only PRIMsrc-0.6.1/PRIMsrc/man/PrimSRC-package.Rd | 44 PRIMsrc-0.6.1/PRIMsrc/man/Real.1-data.Rd | 2 PRIMsrc-0.6.1/PRIMsrc/man/Real.2-data.Rd | 2 PRIMsrc-0.6.1/PRIMsrc/man/Synthetic.1-data.Rd | 2 PRIMsrc-0.6.1/PRIMsrc/man/Synthetic.1b-data.Rd |only PRIMsrc-0.6.1/PRIMsrc/man/Synthetic.2-data.Rd | 2 PRIMsrc-0.6.1/PRIMsrc/man/Synthetic.3-data.Rd | 2 PRIMsrc-0.6.1/PRIMsrc/man/Synthetic.4-data.Rd | 16 PRIMsrc-0.6.1/PRIMsrc/man/plot.Rd | 69 PRIMsrc-0.6.1/PRIMsrc/man/plot_boxkm.Rd | 3 PRIMsrc-0.6.1/PRIMsrc/man/plot_boxtrace.Rd | 7 PRIMsrc-0.6.1/PRIMsrc/man/plot_boxtraj.Rd | 7 PRIMsrc-0.6.1/PRIMsrc/man/plot_profile.Rd | 5 PRIMsrc-0.6.1/PRIMsrc/man/predict.Rd | 35 PRIMsrc-0.6.1/PRIMsrc/man/print.Rd | 34 PRIMsrc-0.6.1/PRIMsrc/man/sbh.Rd | 39 PRIMsrc-0.6.1/PRIMsrc/man/summary.Rd | 31 30 files changed, 1765 insertions(+), 1652 deletions(-)
Title: D3 JavaScript Network Graphs from R
Description: Creates 'D3' 'JavaScript' network, tree, dendrogram, and Sankey
graphs from 'R'.
Author: Christopher Gandrud [aut, cre],
J.J. Allaire [aut],
Kenton Russell [aut],
B.W. Lewis [ctb],
Kevin Kuo [ctb],
Charles Sese [ctb],
Peter Ellis [ctb],
Jonathan Owen [ctb],
Jennifer Rogers [ctb]
Maintainer: Christopher Gandrud <christopher.gandrud@gmail.com>
Diff between networkD3 versions 0.2.4 dated 2015-10-02 and 0.2.6 dated 2015-10-11
DESCRIPTION | 14 ++-- MD5 | 28 +++++---- NAMESPACE | 3 + NEWS | 12 ++++ R/chordNetwork.R |only R/diagonalNetwork.R | 4 - R/sankeyNetwork.R | 25 ++++++-- README.md | 2 inst/examples/examples.R | 42 ++++++++++++-- inst/htmlwidgets/chordNetwork.js |only inst/htmlwidgets/chordNetwork.yaml |only inst/htmlwidgets/lib/sankey.js | 107 +++++++++++++++++++++++++++++++------ inst/htmlwidgets/sankeyNetwork.js | 90 +++++++++++++++++++++++++++---- man/chordNetwork.Rd |only man/diagonalNetwork.Rd | 4 - man/networkD3-shiny.Rd | 10 ++- man/sankeyNetwork.Rd | 22 +++++-- 17 files changed, 294 insertions(+), 69 deletions(-)
Title: Fast Truncated SVD, PCA and Symmetric Eigendecomposition for
Large Dense and Sparse Matrices
Description: Fast and memory efficient methods for truncated singular and eigenvalue decompositions and principal component analysis of large sparse or dense matrices.
Author: Jim Baglama and Lothar Reichel
Maintainer: Bryan W. Lewis <blewis@illposed.net>
Diff between irlba versions 1.0.3 dated 2014-01-25 and 2.0.0 dated 2015-10-11
irlba-1.0.3/irlba/NEWS |only irlba-1.0.3/irlba/inst/doc/irlba.R |only irlba-2.0.0/irlba/DESCRIPTION | 19 - irlba-2.0.0/irlba/MD5 | 23 - irlba-2.0.0/irlba/NAMESPACE | 8 irlba-2.0.0/irlba/R/eigen.R |only irlba-2.0.0/irlba/R/irlba.R | 626 ++++++++++++++++++--------------- irlba-2.0.0/irlba/R/utility.R |only irlba-2.0.0/irlba/README.md |only irlba-2.0.0/irlba/build |only irlba-2.0.0/irlba/inst/doc/irlba.Rnw | 194 ++++++---- irlba-2.0.0/irlba/inst/doc/irlba.pdf |binary irlba-2.0.0/irlba/man/irlba.Rd | 191 +++++++--- irlba-2.0.0/irlba/man/partial_eigen.Rd |only irlba-2.0.0/irlba/tests/test.R | 86 ++-- irlba-2.0.0/irlba/vignettes/irlba.Rnw | 194 ++++++---- 16 files changed, 850 insertions(+), 491 deletions(-)
Title: Classification and Regression Training
Description: Misc functions for training and plotting classification and
regression models.
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams, Chris Keefer, Allan Engelhardt, Tony Cooper, Zachary Mayer,
Brenton Kenkel, the R Core Team, Michael Benesty, Reynald Lescarbeau,
Andrew Ziem, Luca Scrucca, Yuan Tang and Can Candan.
Maintainer: Max Kuhn <Max.Kuhn@pfizer.com>
Diff between caret versions 6.0-52 dated 2015-07-17 and 6.0-57 dated 2015-10-11
DESCRIPTION | 23 - MD5 | 73 +-- NAMESPACE | 5 R/aaa.R | 417 ++++++++++-------- R/adaptive.R | 14 R/confusionMatrix.R | 4 R/createDataPartition.R | 1 R/createFolds.R | 3 R/createResample.R | 4 R/ggplot.R | 99 ++++ R/lift.R | 1 R/misc.R | 101 +--- R/modelLookup.R | 40 + R/preProcess.R | 817 ++++++++++++++++++++++++------------ R/print.train.R | 75 ++- R/reg_sims.R | 15 R/rfe.R | 42 - R/train.default.R | 44 + R/trainControl.R | 4 R/updates.R | 4 R/varImp.R | 129 +---- R/workflows.R | 7 build/vignette.rds |binary inst/NEWS.Rd | 28 + inst/doc/caret.pdf |binary inst/models/models.RData |binary man/confusionMatrix.Rd | 2 man/extractPrediction.Rd | 2 man/plot.rfe.Rd | 2 man/plot.train.Rd | 2 man/postResample.Rd | 9 man/preProcess.Rd | 19 man/sensitivity.Rd | 2 man/train.Rd | 7 man/trainControl.Rd | 11 man/twoClassSim.Rd | 24 - tests/testthat/preProcess_methods.R |only vignettes/caret.Rnw | 2 38 files changed, 1248 insertions(+), 784 deletions(-)