Title: Soybean Nested Association Mapping Dataset
Description: Genomic and multi-environmental soybean data. Soybean Nested Association Mapping (SoyNAM) project dataset funded by the United Soybean Board (USB), pre-formatted for general analysis and genome-wide association analysis using the NAM package.
Author: Alencar Xavier, William Beavis, James Specht, Brian Diers, William Muir, Katy Rainey.
Maintainer: Alencar Xavier <xaviera@purdue.edu>
Diff between SoyNAM versions 1.0 dated 2015-07-29 and 1.1 dated 2015-10-15
SoyNAM-1.0/SoyNAM/R/BLUP.R |only SoyNAM-1.0/SoyNAM/man/BLUP.Rd |only SoyNAM-1.0/SoyNAM/man/ENV.Rd |only SoyNAM-1.1/SoyNAM/DESCRIPTION | 10 +++++----- SoyNAM-1.1/SoyNAM/MD5 | 17 +++++++++-------- SoyNAM-1.1/SoyNAM/R/BLUPs.R |only SoyNAM-1.1/SoyNAM/data/datalist | 1 + SoyNAM-1.1/SoyNAM/data/soybase.RData |only SoyNAM-1.1/SoyNAM/data/soynam.RData |binary SoyNAM-1.1/SoyNAM/man/BLUP1.Rd |only SoyNAM-1.1/SoyNAM/man/BLUP2.Rd |only SoyNAM-1.1/SoyNAM/man/SoyNAM-package.Rd | 8 ++++---- SoyNAM-1.1/SoyNAM/man/soynam.Rd | 20 ++++++++++++++++---- 13 files changed, 35 insertions(+), 21 deletions(-)
Title: Tools for Spatial Data
Description: For curve, surface and function
fitting with an emphasis on splines, spatial data and spatial
statistics. The major methods include cubic, and thin plate splines,
Kriging and compact covariances for large data sets. The splines and
Kriging methods are supporting by functions that can determine the
smoothing parameter (nugget and sill variance) by cross validation
and also by restricted maximum likelihood. For Kriging there is
an easy to function that also estimates the correlation scale (range).
A major feature is that
any covariance function implemented in R and following a simple fields
format can be used for spatial prediction. There are also many useful
functions for plotting and
working with spatial data as images. This package also contains an
implementation of sparse matrix methods for large spatial data sets and
currently requires the sparse matrix (spam) package.
Use help(fields) to get started and for an
overview. The fields source code is deliberately commented and
provides useful explanations of numerical details in addition to the
manual pages. The commented source code can be viewed by expanding the
source code .tar.gz file and looking in R subdirectory.
Author: Douglas Nychka [aut, cre], Reinhard Furrer [aut], John Paige [aut], Stephan Sain [aut]
Maintainer: Douglas Nychka <nychka@ucar.edu>
Diff between fields versions 8.2-1 dated 2015-02-28 and 8.3-5 dated 2015-10-15
fields-8.2-1/fields/R/ozone.R |only fields-8.2-1/fields/R/vgram.R |only fields-8.2-1/fields/man/predict.surface.Rd |only fields-8.3-5/fields/DESCRIPTION | 14 fields-8.3-5/fields/MD5 | 196 ++++--- fields-8.3-5/fields/NAMESPACE | 16 fields-8.3-5/fields/R/ChicagoO3.R |only fields-8.3-5/fields/R/ExponentialUpper.R |only fields-8.3-5/fields/R/Krig.family.R | 10 fields-8.3-5/fields/R/MLESpatialProcess.R | 356 +++++++++----- fields-8.3-5/fields/R/as.image.R | 17 fields-8.3-5/fields/R/compactToMat.R |only fields-8.3-5/fields/R/cubic.cov.R | 9 fields-8.3-5/fields/R/exp.cov.R | 123 +++- fields-8.3-5/fields/R/exp.simple.cov.R | 7 fields-8.3-5/fields/R/image.family.R | 7 fields-8.3-5/fields/R/mKrig.MLE.R | 235 +++++---- fields-8.3-5/fields/R/mKrig.MLE.joint.R |only fields-8.3-5/fields/R/mKrig.R |only fields-8.3-5/fields/R/mKrig.family.R | 180 ------- fields-8.3-5/fields/R/predict.Krig.R | 24 fields-8.3-5/fields/R/predictSurface.Krig.R |only fields-8.3-5/fields/R/predictSurface.family.R | 5 fields-8.3-5/fields/R/quilt.plot.R | 15 fields-8.3-5/fields/R/rad.cov.R | 5 fields-8.3-5/fields/R/rdist.R | 40 - fields-8.3-5/fields/R/rdist.earth.R | 4 fields-8.3-5/fields/R/rdist.earth.vec.R |only fields-8.3-5/fields/R/rdist.vec.R |only fields-8.3-5/fields/R/spatialProcess.R | 8 fields-8.3-5/fields/R/stationary.cov.R | 205 ++++---- fields-8.3-5/fields/R/stationary.taper.cov.R | 4 fields-8.3-5/fields/R/supportsArg.R |only fields-8.3-5/fields/R/unrollZGrid.R |only fields-8.3-5/fields/R/vgram.family.R |only fields-8.3-5/fields/R/vgram.matrix.R | 36 - fields-8.3-5/fields/R/wendland.family.R | 12 fields-8.3-5/fields/README |only fields-8.3-5/fields/data/COmonthlyMet.rda |binary fields-8.3-5/fields/man/CO.Rd | 14 fields-8.3-5/fields/man/CovarianceUpper.Rd |only fields-8.3-5/fields/man/Krig.Amatrix.Rd | 6 fields-8.3-5/fields/man/Krig.Rd | 12 fields-8.3-5/fields/man/Krig.engine.default.Rd | 4 fields-8.3-5/fields/man/MLESpatialProcess.Rd | 204 +++++--- fields-8.3-5/fields/man/Tps.Rd | 61 +- fields-8.3-5/fields/man/as.image.Rd | 6 fields-8.3-5/fields/man/compactToMat.Rd |only fields-8.3-5/fields/man/exp.cov.Rd | 44 + fields-8.3-5/fields/man/fields-internal.Rd | 10 fields-8.3-5/fields/man/gcv.Krig.Rd | 2 fields-8.3-5/fields/man/grid.list.Rd | 20 fields-8.3-5/fields/man/image.plot.Rd | 18 fields-8.3-5/fields/man/mKrig.MLE.Rd | 222 ++++++-- fields-8.3-5/fields/man/mKrig.Rd | 193 ++++--- fields-8.3-5/fields/man/ozone.Rd | 13 fields-8.3-5/fields/man/plot.Krig.Rd | 4 fields-8.3-5/fields/man/predict.Krig.Rd | 4 fields-8.3-5/fields/man/predictSE.Krig.Rd | 2 fields-8.3-5/fields/man/predictSurface.Rd | 51 +- fields-8.3-5/fields/man/print.Krig.Rd | 2 fields-8.3-5/fields/man/quilt.plot.Rd | 5 fields-8.3-5/fields/man/rdist.Rd | 35 + fields-8.3-5/fields/man/rdist.earth.Rd | 24 fields-8.3-5/fields/man/spatialProcess.Rd | 7 fields-8.3-5/fields/man/summary.Krig.Rd | 2 fields-8.3-5/fields/man/supportsArg.Rd |only fields-8.3-5/fields/man/surface.Krig.Rd | 2 fields-8.3-5/fields/man/transformx.Rd | 2 fields-8.3-5/fields/man/vgram.Rd | 95 +++ fields-8.3-5/fields/src/ExponentialUpperC.c |only fields-8.3-5/fields/src/addToDiagC.c |only fields-8.3-5/fields/src/compactToMatC.c |only fields-8.3-5/fields/src/expfnC.c |only fields-8.3-5/fields/src/multebC.c |only fields-8.3-5/fields/src/rdist.f |only fields-8.3-5/fields/src/rdistC.c |only fields-8.3-5/fields/tests/Krig.Z.test.R | 4 fields-8.3-5/fields/tests/Krig.Z.test.Rout.save | 14 fields-8.3-5/fields/tests/Krig.se.W.Rout.save | 14 fields-8.3-5/fields/tests/Krig.se.grid.test.Rout.save | 14 fields-8.3-5/fields/tests/Krig.se.test.R | 8 fields-8.3-5/fields/tests/Krig.se.test.Rout.save | 14 fields-8.3-5/fields/tests/Krig.test.R | 26 - fields-8.3-5/fields/tests/Krig.test.Rout.save | 14 fields-8.3-5/fields/tests/Krig.test.W.Rout.save | 14 fields-8.3-5/fields/tests/KrigGCVREML.test.R | 25 fields-8.3-5/fields/tests/KrigGCVREML.test.Rout.save | 21 fields-8.3-5/fields/tests/Likelihood.test.Rout.save | 14 fields-8.3-5/fields/tests/REMLest.test.Rout.save | 14 fields-8.3-5/fields/tests/Tps.test.R | 6 fields-8.3-5/fields/tests/Tps.test.Rout.save | 14 fields-8.3-5/fields/tests/Wend.test.Rout.save | 14 fields-8.3-5/fields/tests/cov.test.Rout.save | 14 fields-8.3-5/fields/tests/derivative.test.Rout.save | 14 fields-8.3-5/fields/tests/diag.multiply.test.Rout.save | 14 fields-8.3-5/fields/tests/diagonal2.test.Rout.save | 14 fields-8.3-5/fields/tests/evlpoly.test.Rout.save | 14 fields-8.3-5/fields/tests/fastTpsPredict.test.Rout.save |only fields-8.3-5/fields/tests/mKrig.MLE.test.R |only fields-8.3-5/fields/tests/mKrig.MLE.test.Rout.save |only fields-8.3-5/fields/tests/mKrig.Z.Rout.save | 14 fields-8.3-5/fields/tests/mKrig.parameters.test.Rout.save | 14 fields-8.3-5/fields/tests/mKrig.se.test.R | 18 fields-8.3-5/fields/tests/mKrig.se.test.Rout.save | 14 fields-8.3-5/fields/tests/mKrig.test.R | 157 ++++-- fields-8.3-5/fields/tests/mKrig.test.Rout.save | 33 + fields-8.3-5/fields/tests/misc.test.Rout.save | 14 fields-8.3-5/fields/tests/spam.test.Rout.save | 14 fields-8.3-5/fields/tests/sreg.test.Rout.save | 14 fields-8.3-5/fields/tests/test.cov.R |only fields-8.3-5/fields/tests/test.cov.Rout.save |only fields-8.3-5/fields/tests/vgram.test.R | 15 fields-8.3-5/fields/tests/vgram.test.Rout.save | 14 114 files changed, 2059 insertions(+), 1154 deletions(-)
Title: Sparse and Non-Sparse Partial Robust M Regression and
Classification
Description: Robust dimension reduction methods for regression and discriminant analysis are implemented that yield estimates with a partial least squares alike interpretability. Partial robust M regression (PRM) is robust to both vertical outliers and leverage points. Sparse partial robust M regression (SPRM) is a related robust method with sparse coefficient estimate, and therefore with intrinsic variable selection. For bianry classification related discriminant methods are PRM-DA and SPRM-DA.
Author: Sven Serneels, BASF Corp and Irene Hoffmann
Maintainer: Irene Hoffmann <irene.hoffmann@tuwien.ac.at>
Diff between sprm versions 1.1 dated 2014-12-10 and 1.2 dated 2015-10-15
DESCRIPTION | 16 ++-- MD5 | 89 +++++++++++++++++--------- NAMESPACE | 36 ++++++++++ R/balancedfolds.R |only R/biplot.prm.R | 10 +- R/biplot.prmda.R |only R/biplot.sprm.R | 6 - R/biplot.sprmda.R |only R/biweight.R |only R/daprpr.R | 4 - R/dbshdy.R | 2 R/int_weight.R |only R/intervals.prm.R | 2 R/intervals.sprm.R | 2 R/ldafitfun.R |only R/nipls.R | 5 - R/plot.prm.R | 25 ++++++- R/plot.sprm.R | 19 +++++ R/predict.prm.R | 4 - R/predict.prmda.R |only R/predict.sprm.R | 3 R/predict.sprmda.R |only R/print.prmda.R |only R/print.sprmda.R |only R/prmda.R |only R/prmdaCV.R |only R/prms.R | 89 ++++++++++---------------- R/prmsCV.R | 34 ++++++---- R/snipls.R | 22 +++--- R/sprmda.R |only R/sprmdaCV.R |only R/sprms.R | 167 +++++++++++++++++++++++--------------------------- R/sprmsCV.R | 13 ++- R/summary.prmda.R |only R/summary.sprmda.R |only R/weig.R |only man/biplot.prm.Rd | 9 +- man/biplot.prmda.Rd |only man/biplot.sprm.Rd | 11 ++- man/biplot.sprmda.Rd |only man/plot.prm.Rd | 8 +- man/plot.sprm.Rd | 6 - man/predict.prm.Rd | 10 -- man/predict.prmda.Rd |only man/predict.sprm.Rd | 2 man/predict.sprmda.Rd |only man/prmda.Rd |only man/prmdaCV.Rd |only man/prms.Rd | 5 - man/prmsCV.Rd | 6 - man/sprm-package.Rd | 12 ++- man/sprmda.Rd |only man/sprmdaCV.Rd |only man/sprms.Rd | 5 - man/sprmsCV.Rd | 14 ++-- man/summary.prm.Rd | 2 man/summary.prmda.Rd |only man/summary.sprm.Rd | 2 man/summary.sprmda.Rd |only 59 files changed, 369 insertions(+), 271 deletions(-)
Title: Choi and Hall Style Data Sharpening
Description: Functions for use in perturbing data prior to use of nonparametric smoothers
and clustering.
Author: Douglas Woolford and John Braun
Maintainer: John Braun <braun@stats.uwo.ca>
Diff between CHsharp versions 0.3 dated 2012-11-05 and 0.4 dated 2015-10-15
DESCRIPTION | 23 ++++++++++++----------- MD5 | 20 +++++++++++++++++--- NAMESPACE | 9 ++++----- R/MISE.R |only R/SecondDerivativePenalty.R |only R/lambda.R |only R/numericalDerivative.R |only R/penlocreg.R |only R/pllr.R |only R/sharpen.R |only data/d.rda |binary man/MISE.Rd |only man/SecondDerivativePenalty.Rd |only man/lambda.Rd |only man/numericalDerivative.Rd |only man/penlocreg.Rd |only man/pllr.Rd |only man/sharpen.Rd |only 18 files changed, 33 insertions(+), 19 deletions(-)
More information about easyVerification at CRAN
Permanent link
Title: World Population Prospects 2015
Description: Provides data from the United Nation's World Population Prospects 2015.
Author: Population Division, Department of Economic and Social Affairs, United Nations.
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between wpp2015 versions 1.0-0 dated 2015-08-08 and 1.0-1 dated 2015-10-15
ChangeLog | 4 DESCRIPTION | 8 MD5 | 8 data/UNlocations.txt | 550 ++++++++++++++++++++++++------------------------- man/wpp2015-package.Rd | 4 5 files changed, 289 insertions(+), 285 deletions(-)
Title: Variable Selection Using Random Forests
Description: Three steps variable selection procedure based on random forests.
Initially developed to handle high dimensional data (for which number of
variables largely exceeds number of observations), the package is very
versatile and can treat most dimensions of data, for regression and
supervised classification problems. First step is dedicated to eliminate
irrelevant variables from the dataset. Second step aims to select all
variables related to the response for interpretation purpose. Third step
refines the selection by eliminating redundancy in the set of variables
selected by the second step, for prediction purpose.
Author: Robin Genuer [aut, cre],
Jean-Michel Poggi [aut],
Christine Tuleau-Malot [aut]
Maintainer: Robin Genuer <Robin.Genuer@isped.u-bordeaux2.fr>
Diff between VSURF versions 1.0.1 dated 2015-10-12 and 1.0.2 dated 2015-10-15
DESCRIPTION | 10 +++--- MD5 | 10 ++++-- NEWS | 7 ++++ tests/testthat/case_win32_test_iris.R |only tests/testthat/case_win32b_test_orange.R |only tests/testthat/test_iris.R | 46 +++++++------------------------ tests/testthat/test_orange.R | 39 +++++--------------------- 7 files changed, 36 insertions(+), 76 deletions(-)
Title: Test Analysis Modules
Description:
Includes marginal and joint maximum likelihood
estimation of uni- and multidimensional item response models
(Rasch, 2PL, 3PL, Generalized Partial Credit, Multi Facets,
Nominal Item Response, Structured Latent Class Analysis,
Mixture Distribution IRT Models, Located Latent Class Models).
Latent regression models and plausible value imputation are
also supported.
Author: Thomas Kiefer [aut], Alexander Robitzsch [aut, cre], Margaret Wu [aut]
Maintainer: Alexander Robitzsch <a.robitzsch@bifie.at>
Diff between TAM versions 1.13-0 dated 2015-08-29 and 1.14-0 dated 2015-10-15
DESCRIPTION | 11 +++++------ MD5 | 14 +++++++------- R/designMatrices_aux2.R | 6 ++++-- R/stud_prior.R | 2 +- R/tam.pv.R | 7 ++++--- inst/NEWS | 24 ++++++++++++++++++++++++ man/TAM-package.Rd | 3 +-- man/tam.pv.Rd | 2 +- 8 files changed, 47 insertions(+), 22 deletions(-)
Title: Ridge Estimation of Precision Matrices from High-Dimensional
Data
Description: Proper L2-penalized ML estimators for the
precision matrix as well as supporting functions to employ these estimators
in a graphical modeling setting.
Author: Carel F.W. Peeters [cre, aut], Anders Ellern Bilgrau [aut], Wessel N. van Wieringen [aut]
Maintainer: Carel F.W. Peeters <cf.peeters@vumc.nl>
Diff between rags2ridges versions 1.4 dated 2014-11-27 and 2.0 dated 2015-10-15
DESCRIPTION | 22 MD5 | 96 NAMESPACE | 32 R/RcppExports.R |only R/rags2ridges.R | 6392 +++++++++++++++++++++------------------ R/rags2ridgesFused.R |only R/rags2ridgesMisc.R |only README.md |only inst/CITATION | 74 inst/NEWS.Rd |only man/GGMblockNullPenalty.Rd | 34 man/GGMblockTest.Rd | 41 man/GGMmutualInfo.Rd |only man/GGMnetworkStats.Rd | 16 man/GGMnetworkStats.fused.Rd |only man/GGMpathStats.Rd | 54 man/GGMpathStats.fused.Rd |only man/KLdiv.Rd | 20 man/KLdiv.fused.Rd |only man/NLL.Rd |only man/Ugraph.Rd | 41 man/adjacentMat.Rd | 9 man/armaRidgeP.Rd |only man/conditionNumberPlot.Rd | 36 man/covML.Rd | 10 man/covMLknown.Rd |only man/createS.Rd |only man/default.penalty.Rd |only man/default.target.Rd | 20 man/default.target.fused.Rd |only man/edgeHeat.Rd | 14 man/evaluateS.Rd | 12 man/evaluateSfit.Rd | 24 man/fullMontyS.Rd | 20 man/fused.test.Rd |only man/getKEGGPathway.Rd |only man/is.Xlist.Rd |only man/isSymmetricPD.Rd |only man/kegg.target.Rd |only man/loss.Rd | 26 man/optPenalty.LOOCV.Rd | 31 man/optPenalty.LOOCVauto.Rd | 18 man/optPenalty.aLOOCV.Rd | 41 man/optPenalty.fused.Rd |only man/pcor.Rd | 8 man/plot.ptest.Rd |only man/pooledS.Rd |only man/print.optPenaltyFusedGrid.Rd |only man/print.ptest.Rd |only man/rags2ridges-package.Rd | 94 man/ridgeP.Rd |only man/ridgeP.fused.Rd |only man/ridgePathS.Rd | 35 man/ridgeS.Rd | 43 man/rmvnormal.Rd |only man/sparsify.Rd | 20 man/sparsify.fused.Rd |only src |only tests |only 59 files changed, 4006 insertions(+), 3277 deletions(-)
Title: Quantitative Analysis of Textual Data
Description: A fast, flexible toolset for for the management, processing, and
quantitative analysis of textual data in R.
Author: Kenneth Benoit [aut, cre],
Paul Nulty [aut],
Pablo Barberá [ctb],
Kohei Watanabe [ctb],
Benjamin Lauderdale [ctb]
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between quanteda versions 0.8.4-2 dated 2015-09-09 and 0.8.6-0 dated 2015-10-15
DESCRIPTION | 11 MD5 | 63 - NAMESPACE | 5 NEWS | 30 R/corpus.R | 21 R/dfm-classes.R | 137 ++ R/dfm-main.R | 123 +- R/dfm-methods.R | 32 R/dictionaries.R | 51 + R/kwic.R | 244 ++++- R/ngrams.R | 131 -- R/settings.R | 2 R/stopwords.R | 242 ++++- R/textfile.R | 15 R/toLower.R | 2 R/tokenize.R | 80 - R/tokenize_outtakes.R |only R/wordstem.R | 24 inst/doc/development-plans.html | 842 ++++++++++-------- inst/doc/quickstart.Rmd | 1 inst/doc/quickstart.html | 1833 ++++++++++++++++++++++------------------ man/corpus.Rd | 8 man/dfm.Rd | 59 - man/dictionary.Rd | 2 man/head.dfm.Rd |only man/kwic.Rd | 49 - man/ngrams.Rd | 9 man/print.dfm.Rd | 19 man/print.tokenizedTexts.Rd |only man/selectFeatures.Rd | 34 man/textfile.Rd | 2 man/tokenize.Rd | 9 man/weight.Rd | 17 vignettes/quickstart.Rmd | 1 34 files changed, 2508 insertions(+), 1590 deletions(-)
Title: Hierarchical Optimal Matching and Machine Learning Toolbox
Description: Various functions and algorithms are provided here for solving optimal matching tasks in the context of preclinical cancer studies. Further, various helper and plotting functions are provided for unsupervised and supervised machine learning as well as longitudinal mixed-effects modeling of tumor growth response patterns.
Author: Teemu Daniel Laajala <teelaa@utu.fi>
Maintainer: Teemu Daniel Laajala <teelaa@utu.fi>
Diff between hamlet versions 0.9.4 dated 2015-08-04 and 0.9.4-2 dated 2015-10-15
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- inst/doc/introduction.Rnw | 4 ++-- man/hamlet-package.Rd | 4 ++-- vignettes/introduction.Rnw | 4 ++-- 5 files changed, 14 insertions(+), 14 deletions(-)
Title: Tools for Cycling Data Analysis
Description: A suite of functions for analysing cycling data.
Author: Jordan Mackie [aut, cre]
Maintainer: Jordan Mackie <jmackie@protonmail.com>
Diff between cycleRtools versions 1.0.2 dated 2015-10-14 and 1.0.3 dated 2015-10-15
DESCRIPTION | 6 ++--- MD5 | 22 ++++++++++----------- NAMESPACE | 3 +- NEWS | 4 +++ R/Wbal.R | 8 ------- R/convert_time.R | 48 ++++++++++++++++++++++++++++------------------ R/download_elev_data.R | 7 ------ R/elevation_correct.R | 3 +- man/Wbal.Rd | 8 ------- man/convert_time.Rd | 20 +++++++++---------- man/download_elev_data.Rd | 7 ------ man/elevation_correct.Rd | 2 + 12 files changed, 66 insertions(+), 72 deletions(-)
Title: Tools for Survey Statistics in Educational Assessment
Description:
Contains tools for survey statistics (especially in educational
assessment) for datasets with replication designs (jackknife,
bootstrap, replicate weights). Descriptive statistics, linear
and logistic regression, path models for manifest variables
with measurement error correction and two-level hierarchical
regressions for weighted samples are included. Statistical
inference can be conducted for multiply imputed datasets and
nested multiply imputed datasets.
This package is developed by BIFIE (Federal Institute for
Educational Research, Innovation and Development of the Austrian
School System; Salzburg, Austria).
Author: BIFIE
Maintainer: Alexander Robitzsch <a.robitzsch@bifie.at>
Diff between BIFIEsurvey versions 1.5-0 dated 2015-10-08 and 1.6-0 dated 2015-10-15
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/BIFIE.data.jack.R | 19 +++++++++---------- R/BIFIE.univar.R | 2 +- R/BIFIE.univar.test.R | 28 +++++++++++++++++++++++++++- R/BIFIE_table_multiple_groupings.R | 2 +- inst/NEWS | 14 ++++++++++++++ man/BIFIE.univar.test.Rd | 32 +++++++++++++++++++++++++++++++- man/BIFIEsurvey-package.Rd | 7 ++++++- 9 files changed, 101 insertions(+), 27 deletions(-)
Title: Basic Wireless Communications Simulation
Description: A communications simulation package supporting common wireless modulation
formats including BPSK, QPSK, 8-PSK, 16-PSK, 16-QAM and 64-QAM. The package includes AWGN
noise generation, and raised cosine and square root raised cosine pulse shaping. It also
includes convenience functions for plotting constellation diagrams, density plots, stem
plots and eye diagrams. Together these functions enable the evaluation of bit error and
symbol error rates, evaluation of pulse shaping and inter-symbol interference and support
visualization of the respective signals and noise in a variety of formats.
Author: Alberto Gutierrez [aut, cre]
Maintainer: Alberto Gutierrez <algutier1@gmail.com>
Diff between rwirelesscom versions 1.3 dated 2015-09-11 and 1.4.2 dated 2015-10-15
DESCRIPTION | 26 +++-- MD5 | 50 ++++++----- NAMESPACE | 15 +++ R/RcppExports.R |only R/rwirelesscom.R | 216 +++++++++++++++++++++++++++++++++++++++---------- man/eyediagram.Rd |only man/f16pskdemod.Rd | 16 +-- man/f16pskmod.Rd | 25 +++-- man/f16qamdemod.Rd | 16 +-- man/f16qammod.Rd | 25 +++-- man/f64qamdemod.Rd | 16 +-- man/f64qammod.Rd | 25 +++-- man/f8pskdemod.Rd | 16 +-- man/f8pskmod.Rd | 25 +++-- man/fNo.Rd | 16 +-- man/fbpskdemod.Rd | 16 +-- man/fbpskmod.Rd | 25 +++-- man/fqpskdemod.Rd | 16 +-- man/fqpskmod.Rd | 19 +--- man/iqdensityplot.Rd | 18 ++-- man/iqscatterplot.Rd | 16 +-- man/rcosine.Rd |only man/rwirelesscom.Rd | 17 ++- man/sinc.Rd |only man/sqrtrcosine.Rd |only man/stemplot.Rd |only src |only tests/testthat.R | 2 tests/testthat/test1.R | 104 ++++++++++++++++++++--- 29 files changed, 491 insertions(+), 229 deletions(-)
Title: Analysis of Parent-Specific DNA Copy Numbers
Description: Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumor-only analyses are supported.
Author: Henrik Bengtsson [aut, cre, cph],
Pierre Neuvial [aut],
Venkatraman E. Seshan [aut],
Adam B. Olshen [aut],
Paul T. Spellman [aut],
Richard A. Olshen [aut]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between PSCBS versions 0.45.1 dated 2015-09-17 and 0.50.0 dated 2015-10-15
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS | 9 +++++++++ R/segmentByPairedPSCBS.R | 15 +++++---------- inst/doc/CBS.pdf |binary inst/doc/PairedPSCBS.pdf |binary man/segmentByPairedPSCBS.Rd | 8 ++------ 7 files changed, 27 insertions(+), 27 deletions(-)
Title: Tables so Beautifully Fine-Tuned You Will Believe It's Magic
Description: The introduction of the broom package has made converting model objects into data
frames as simple as a single function. While the broom package focuses on providing tidy
data frames that can be used in advanced analysis, it deliberately stops short of providing
functionality for reporting models in publication-ready tables. pixiedust provides this
functionality with a programming interface intended to be similar to ggplot2's system of
layers with fine tuned control over each cell of the table. Options for output include
printing to the console and to the common markdown formats (markdown, HTML, and LaTeX).
With a little pixiedust (and happy thoughts) tables can really fly.
Author: Benjamin Nutter [aut, cre]
Maintainer: Benjamin Nutter <nutter@battelle.org>
Diff between pixiedust versions 0.1.1 dated 2015-08-03 and 0.5.0 dated 2015-10-15
pixiedust-0.1.1/pixiedust/R/add_sprinkles.R |only pixiedust-0.1.1/pixiedust/R/sprinkles.R |only pixiedust-0.1.1/pixiedust/man/add_sprinkles.Rd |only pixiedust-0.1.1/pixiedust/man/sprinkles.Rd |only pixiedust-0.5.0/pixiedust/DESCRIPTION | 13 pixiedust-0.5.0/pixiedust/LICENSE | 6 pixiedust-0.5.0/pixiedust/MD5 | 107 pixiedust-0.5.0/pixiedust/NAMESPACE | 69 pixiedust-0.5.0/pixiedust/NEWS | 252 pixiedust-0.5.0/pixiedust/R/as.data.frame.dust.R |only pixiedust-0.5.0/pixiedust/R/chain.R | 28 pixiedust-0.5.0/pixiedust/R/dust.R | 414 - pixiedust-0.5.0/pixiedust/R/glance_foot.R |only pixiedust-0.5.0/pixiedust/R/medley.R |only pixiedust-0.5.0/pixiedust/R/perform_function.R | 62 pixiedust-0.5.0/pixiedust/R/pixiedust-pkg.R |only pixiedust-0.5.0/pixiedust/R/print.dust.R | 70 pixiedust-0.5.0/pixiedust/R/print_dust_console.R | 153 pixiedust-0.5.0/pixiedust/R/print_dust_html.R | 322 - pixiedust-0.5.0/pixiedust/R/print_dust_latex.R |only pixiedust-0.5.0/pixiedust/R/print_dust_markdown.R | 190 pixiedust-0.5.0/pixiedust/R/pvalString.R | 84 pixiedust-0.5.0/pixiedust/R/redust.R |only pixiedust-0.5.0/pixiedust/R/sprinkle.R |only pixiedust-0.5.0/pixiedust/R/sprinkle_colnames.R | 175 pixiedust-0.5.0/pixiedust/R/sprinkle_print_method.R |only pixiedust-0.5.0/pixiedust/R/sprinkle_table.R |only pixiedust-0.5.0/pixiedust/R/tidy_levels_labels.R |only pixiedust-0.5.0/pixiedust/R/zzz.R | 16 pixiedust-0.5.0/pixiedust/README.md | 432 - pixiedust-0.5.0/pixiedust/build/vignette.rds |binary pixiedust-0.5.0/pixiedust/inst/doc/advancedMagic.R |only pixiedust-0.5.0/pixiedust/inst/doc/advancedMagic.Rmd |only pixiedust-0.5.0/pixiedust/inst/doc/advancedMagic.html |only pixiedust-0.5.0/pixiedust/inst/doc/pixiedust.R | 114 pixiedust-0.5.0/pixiedust/inst/doc/pixiedust.Rmd | 556 +- pixiedust-0.5.0/pixiedust/inst/doc/pixiedust.html | 2736 ++-------- pixiedust-0.5.0/pixiedust/inst/doc/sprinkles.R | 10 pixiedust-0.5.0/pixiedust/inst/doc/sprinkles.Rmd | 108 pixiedust-0.5.0/pixiedust/inst/doc/sprinkles.html | 525 - pixiedust-0.5.0/pixiedust/inst/sprinkles.csv | 57 pixiedust-0.5.0/pixiedust/man/as.data.frame.dust.Rd |only pixiedust-0.5.0/pixiedust/man/chain.Rd | 36 pixiedust-0.5.0/pixiedust/man/dust.Rd | 214 pixiedust-0.5.0/pixiedust/man/glance_foot.Rd |only pixiedust-0.5.0/pixiedust/man/medley.Rd |only pixiedust-0.5.0/pixiedust/man/pixiedust.Rd |only pixiedust-0.5.0/pixiedust/man/print.dust.Rd | 52 pixiedust-0.5.0/pixiedust/man/pvalString.Rd | 100 pixiedust-0.5.0/pixiedust/man/sprinkle.Rd |only pixiedust-0.5.0/pixiedust/man/sprinkle_colnames.Rd | 89 pixiedust-0.5.0/pixiedust/man/tidy_levels_labels.Rd |only pixiedust-0.5.0/pixiedust/tests/testthat.R | 6 pixiedust-0.5.0/pixiedust/tests/testthat/test-as.data.frame.R |only pixiedust-0.5.0/pixiedust/tests/testthat/test-dust.R | 124 pixiedust-0.5.0/pixiedust/tests/testthat/test-glance_foot.R |only pixiedust-0.5.0/pixiedust/tests/testthat/test-medley.R |only pixiedust-0.5.0/pixiedust/tests/testthat/test-perform_function.R | 48 pixiedust-0.5.0/pixiedust/tests/testthat/test-print.dust.R | 212 pixiedust-0.5.0/pixiedust/tests/testthat/test-print_dust_methods.R |only pixiedust-0.5.0/pixiedust/tests/testthat/test-pvalString.R | 26 pixiedust-0.5.0/pixiedust/tests/testthat/test-redust.R |only pixiedust-0.5.0/pixiedust/tests/testthat/test-roundSafe.R |only pixiedust-0.5.0/pixiedust/tests/testthat/test-sprinkle_colnames.R | 56 pixiedust-0.5.0/pixiedust/tests/testthat/test-sprinkle_table.R |only pixiedust-0.5.0/pixiedust/tests/testthat/test-sprinkles.R | 944 +-- pixiedust-0.5.0/pixiedust/tests/testthat/test-tidy_label_level.R |only pixiedust-0.5.0/pixiedust/vignettes/advancedMagic.Rmd |only pixiedust-0.5.0/pixiedust/vignettes/pixiedust.Rmd | 556 +- pixiedust-0.5.0/pixiedust/vignettes/pixiedust_in_latex.Rmd |only pixiedust-0.5.0/pixiedust/vignettes/sprinkles.Rmd | 108 71 files changed, 4256 insertions(+), 4814 deletions(-)
Title: Network Dynamic Temporal Visualizations
Description: Renders dynamic network data from 'networkDynamic' objects as movies, interactive animations, or other representations of changing relational structures and attributes.
Author: Skye Bender-deMoll [cre, aut],
Martina Morris [ctb]
Maintainer: Skye Bender-deMoll <skyebend@uw.edu>
Diff between ndtv versions 0.6.1 dated 2015-04-30 and 0.7.0 dated 2015-10-15
ChangeLog | 11 ++ DESCRIPTION | 17 +-- MD5 | 59 +++++++----- NAMESPACE | 14 ++ R/export.movie.R | 54 ++++++++--- R/layout_centering.R | 10 +- R/ndtvAnimationWidget.R |only R/render.d3_animation.R | 125 ++++++++++++++++---------- R/specialEffects.R |only R/tea_utils.R | 4 R/timecube.R |only R/transmissionTimeline.R |only build/vignette.rds |binary inst/doc/ndtv.R | 80 +++++++++++----- inst/doc/ndtv.Rnw | 44 +++++++-- inst/doc/ndtv.pdf |binary inst/htmlwidgets |only inst/javascript/ndtv-d3/src/css/styles.css | 1 inst/javascript/ndtv-d3/src/js/ndtv-d3.js | 16 +-- inst/javascript/ndtv-d3/src/lib/d3.slider.css | 1 man/effectFun.Rd |only man/install.ffmpeg.Rd | 4 man/ndtv-package.Rd | 2 man/render.animation.Rd | 11 +- man/render.d3movie.Rd | 16 ++- man/timePrism.Rd |only man/timeline.Rd | 4 man/toy_epi_sim.Rd | 2 man/transmissionTimeline.Rd |only tests/d3_animation_tests.R | 6 + tests/effects_tests.R |only tests/networkAnimationTest.R | 2 tests/timeline_test.R | 7 + tests/transmissionTimelineTests.R |only vignettes/ndtv.Rnw | 44 +++++++-- 35 files changed, 369 insertions(+), 165 deletions(-)
Title: Calculate Generalized Eigenvalues, the Generalized Schur
Decomposition and the Generalized Singular Value Decomposition
of a Matrix Pair with Lapack
Description: Functions to compute generalized eigenvalues and eigenvectors,
the generalized Schur decomposition and
the generalized Singular Value Decomposition of a matrix pair,
using Lapack routines.
Author: Berend Hasselman [cre, aut],
Lapack authors [aut, cph]
Maintainer: Berend Hasselman <bhh@xs4all.nl>
Diff between geigen versions 1.6 dated 2015-07-16 and 1.7 dated 2015-10-15
geigen-1.6/geigen/inst/CITATION |only geigen-1.7/geigen/DESCRIPTION | 20 ++++++++++++-------- geigen-1.7/geigen/MD5 | 13 ++++++------- geigen-1.7/geigen/NEWS | 6 ++++++ geigen-1.7/geigen/R/gsvd.R | 2 ++ geigen-1.7/geigen/man/geigen-package.Rd | 2 +- geigen-1.7/geigen/man/geigen.Rd | 2 +- geigen-1.7/geigen/man/gsvd.Rd | 8 ++++---- 8 files changed, 32 insertions(+), 21 deletions(-)