Title: Patient-Centered Network Meta-Analysis
Description: Provides functions to perform arm-based network meta-analysis for datasets with binary, continuous, and count outcomes.
Author: Lifeng Lin, Jing Zhang, and Haitao Chu
Maintainer: Lifeng Lin <linl@umn.edu>
Diff between pcnetmeta versions 2.2.1 dated 2015-06-05 and 2.2.2 dated 2015-10-21
pcnetmeta-2.2.1/pcnetmeta/R/model.binary.het.ind.R |only pcnetmeta-2.2.1/pcnetmeta/R/model.binary.hom.ind.R |only pcnetmeta-2.2.1/pcnetmeta/R/model.cont.het.ind.R |only pcnetmeta-2.2.1/pcnetmeta/R/model.cont.hom.ind.R |only pcnetmeta-2.2.1/pcnetmeta/R/model.followup.het.ind.R |only pcnetmeta-2.2.1/pcnetmeta/R/model.followup.hom.ind.R |only pcnetmeta-2.2.1/pcnetmeta/R/model.py.het.ind.R |only pcnetmeta-2.2.1/pcnetmeta/R/model.py.hom.ind.R |only pcnetmeta-2.2.2/pcnetmeta/DESCRIPTION | 8 +- pcnetmeta-2.2.2/pcnetmeta/MD5 | 42 ++++------ pcnetmeta-2.2.2/pcnetmeta/NAMESPACE | 6 + pcnetmeta-2.2.2/pcnetmeta/R/absolute.plot.R | 56 ++++++-------- pcnetmeta-2.2.2/pcnetmeta/R/contrast.plot.R | 40 ++++++---- pcnetmeta-2.2.2/pcnetmeta/R/nma.ab.R | 74 +++++------------- pcnetmeta-2.2.2/pcnetmeta/R/nma.ab.cont.R | 76 ++++++------------- pcnetmeta-2.2.2/pcnetmeta/R/nma.ab.followup.R | 70 ++++------------- pcnetmeta-2.2.2/pcnetmeta/R/nma.ab.py.R | 70 ++++------------- pcnetmeta-2.2.2/pcnetmeta/R/rank.prob.R | 19 +++- pcnetmeta-2.2.2/pcnetmeta/man/absolute.plot.Rd | 16 +++- pcnetmeta-2.2.2/pcnetmeta/man/contrast.plot.Rd | 12 +-- pcnetmeta-2.2.2/pcnetmeta/man/nma.ab.Rd | 24 +++--- pcnetmeta-2.2.2/pcnetmeta/man/nma.ab.cont.Rd | 23 +++-- pcnetmeta-2.2.2/pcnetmeta/man/nma.ab.followup.Rd | 27 ++++-- pcnetmeta-2.2.2/pcnetmeta/man/nma.ab.py.Rd | 27 ++++-- pcnetmeta-2.2.2/pcnetmeta/man/pcnetmeta-package.Rd | 2 pcnetmeta-2.2.2/pcnetmeta/man/rank.prob.Rd | 11 ++ 26 files changed, 259 insertions(+), 344 deletions(-)
Title: Discrete Time Survival Analysis
Description: Provides data transformations, estimation utilities,
predictive evaluation measures and simulation functions for discrete time
survival analysis.
Author: Thomas Welchowski and Matthias Schmid
Maintainer: Thomas Welchowski <welchow@imbie.meb.uni-bonn.de>
Diff between discSurv versions 1.1.0 dated 2015-05-27 and 1.1.1 dated 2015-10-21
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NAMESPACE | 4 ++++ man/dataLongCompRisks.Rd | 27 +++++++++++++++++++++++++++ man/discSurv-package.Rd | 18 +++++++++++++----- 5 files changed, 53 insertions(+), 14 deletions(-)
Title: Bayesian Spatial Survival Analysis with Parametric Proportional
Hazards Models
Description: Bayesian inference for parametric proportional hazards spatial survival models; flexible spatial survival models.
Author: Benjamin M. Taylor and Barry S. Rowlingson
Maintainer: Benjamin M. Taylor <b.taylor1@lancaster.ac.uk>
Diff between spatsurv versions 0.9-10 dated 2015-07-10 and 0.9-11 dated 2015-10-21
DESCRIPTION | 9 +-- MD5 | 43 ++++++++++----- NAMESPACE | 7 ++ R/GMRF.R | 23 ++++++++ R/calibratemcmc.R | 15 +++++ R/log_posteriors_and_derivatives_polygonal.R | 3 + R/nonspatial_log_likelihood_and_derivatives.R | 16 +++++ R/outputSummary.R |only R/plottingfunctions.R | 27 +++++++++- R/postprocessing.R | 13 +++- R/spatgrid.R | 70 ++++++++++++++++++++++++++ R/spatsurv.R | 4 - R/spatsurvMisc.R | 5 + R/survsim.R | 2 R/survspat.R | 11 ++-- README.md | 2 data |only man/Summarise.Rd |only man/fs.Rd |only man/fstimes.Rd |only man/getOptCellwidth.Rd |only man/getbb.Rd |only man/print.textSummary.Rd |only man/showGrid.Rd |only man/spatsurv-package.Rd | 2 man/spplot1.Rd | 4 + man/textSummary.Rd |only 27 files changed, 217 insertions(+), 39 deletions(-)
Title: Bias, Precision, and Power for Multi-Level Random Regressions
Description: Calculates bias, precision, and power for multi-level random regressions. Random regressions are types of hierarchical models in which data are structured in groups and (regression) coefficients can vary by groups. Tools to estimate model performance are designed mostly for scenarios where (regression) coefficients vary at just one level. 'MultiRR' provides simulation and analytical tools (based on 'lme4') to study model performance for random regressions that vary at more than one level (multi-level random regressions), allowing researchers to determine optimal sampling designs.
Author: Yimen G. Araya-Ajoy
Maintainer: Yimen G. Araya-Ajoy <yimencr@gmail.com>
Diff between MultiRR versions 1.0 dated 2015-05-13 and 1.1 dated 2015-10-21
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NAMESPACE | 6 +++++- man/Anal.MultiRR.Rd | 2 +- man/Bias.Rd | 2 +- man/Imprecision.Rd | 2 +- man/MultiRR-package.Rd | 2 +- man/Plot.Sim.Rd | 2 +- man/Power.Rd | 2 +- man/Sim.MultiRR.Rd | 2 +- man/Summary.Rd | 2 +- 11 files changed, 27 insertions(+), 23 deletions(-)
Title: Enhanced Analytics for Marketers Navigating the Ocean of Web
Data
Description: Provides a web analytics toolbox for marketers using services such as Google Analytics, Facebook Insights, etc.
Author: Felix MIKAELIAN <felix.mikaelian@essec.edu>
Maintainer: Felix MIKAELIAN <felix.mikaelian@essec.edu>
Diff between marketeR versions 0.1.0 dated 2015-09-10 and 0.1.1 dated 2015-10-21
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 7 +++++++ R/AutoReport.R | 6 +++--- R/WeekSummary.R | 2 +- inst/AutoReport/AutoReport.Rmd | 8 ++++---- 6 files changed, 23 insertions(+), 16 deletions(-)
Title: Linear Group Fixed Effects
Description: Transforms away factors with many levels prior to doing an OLS.
Useful for estimating linear models with multiple group fixed effects, and for
estimating linear models which uses factors with many levels as pure control variables.
Includes support for instrumental variables, conditional F statistics for weak instruments,
robust and multi-way clustered standard errors, as well as limited mobility bias correction.
Author: Simen Gaure, Ragnar Frisch Centre for Economic Research
Maintainer: Simen Gaure <Simen.Gaure@frisch.uio.no>
Diff between lfe versions 2.3-1709 dated 2015-05-26 and 2.4-1786 dated 2015-10-21
DESCRIPTION | 10 - MD5 | 75 +++++---- NAMESPACE | 13 + R/bccorr.R | 189 +++++++++++++++++++----- R/cgsolve.R | 14 + R/compfactor.R | 4 R/efactory.R | 8 - R/felm.R | 333 +++++++++++++++++++++++++++++++++----------- R/generics.R | 16 +- R/is.estimable.R | 9 - R/kaczmarz.R | 9 - R/startup.R | 7 R/trace.R | 27 ++- R/utils.R | 23 ++- exec/lfescript | 94 ++++++++---- inst/NEWS.Rd | 26 +++ inst/doc/CHANGELOG | 3 inst/doc/identification.pdf |binary inst/doc/lfeguide.txt | 1 inst/doc/lfehow.pdf |binary inst/doc/speed.pdf |binary man/bccorr.Rd | 4 man/condfstat.Rd | 4 man/demeanlist.Rd | 8 + man/felm.Rd | 23 ++- man/fevcov.Rd | 8 + man/lfe-package.Rd | 10 - src/Makevars.in | 6 src/demean.c | 11 - src/lfe.c | 12 + src/lfe.h | 4 src/ppf.c |only tests/bctest.Rout.save | 22 +- tests/intact.R |only tests/intact.Rout.save |only tests/interact.Rout.save | 6 tests/verify.R | 5 tests/verify.Rout.save | 11 + tests/weights.R | 1 tests/weights.Rout.save | 28 ++- 40 files changed, 747 insertions(+), 277 deletions(-)
Title: Interface to the Agave API
Description: Provides an interface to the the many computational resources iPlant offers through their RESTful application programming interface, see <http://www.iplantcollaborative.org/> for more information about iPlant, and <http://www.iplantcollaborative.org/ci/iplant-science-apis> for its APIs. Currently, 'rPlant' functions interact with the iPlant Agave API, the Taxonomic Name Resolution Service API, and the Phylotastic Taxosaurus API. Before using 'rPlant', users will have to register with the iPlant Collaborative. See <http://agaveapi.co/> for more information on the Agave API and <http://user.iplantcollaborative.org/> to register with iPlant.
Author: Barb Banbury <darwinthesun@gmail.com> and Kurt Michels <kamichels@math.arizona.edu>, Jeremy M. Beaulieu <jeremy.beaulieu@yale.edu>, Brian O'Meara <bomeara@utk.edu>
Maintainer: Kurt Michels <kamichels@math.arizona.edu>
Diff between rPlant versions 2.11 dated 2015-09-28 and 2.12 dated 2015-10-21
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/Muscle.R | 6 ++---- 3 files changed, 7 insertions(+), 9 deletions(-)
Title: Read Tabular Data
Description: Read flat/tabular text files from disk (or a connection).
Author: Hadley Wickham [aut, cre],
Romain Francois [aut],
R Core Team [ctb] (Date time code adapted from R),
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between readr versions 0.2.0 dated 2015-10-19 and 0.2.1 dated 2015-10-21
DESCRIPTION | 12 ++++-------- MD5 | 16 ++++++++-------- R/encoding.R | 2 +- inst/doc/column-types.html | 4 ++-- inst/doc/locales.html | 4 ++-- man/encoding.Rd | 2 +- src/Collector.cpp | 2 +- src/Iconv.cpp | 16 +++++++++++++++- src/localtime.c | 6 ++++++ 9 files changed, 40 insertions(+), 24 deletions(-)
Title: Nonparametric Combination of Hypothesis Tests
Description: An implementation of nonparametric combination of hypothesis tests.
This package performs nonparametric combination (Pesarin and Salmaso 2010),
a permutation-based procedure for jointly testing multiple hypotheses. The
tests are conducted under the global "sharp" null hypothesis of no effects,
and the component tests are combined on the metric of their p-values. A
key feature of nonparametric combination is that it accounts for the
dependence among tests under the null hypothesis. In addition to the
"NPC" function, which performs nonparametric combination itself, the
package also contains a number of helper functions, many of which calculate
a test statistic given an input of data.
Author: Devin Caughey [aut, cre]
Maintainer: Devin Caughey <devin.caughey@gmail.com>
Diff between NPC versions 1.0.0 dated 2015-04-18 and 1.0.2 dated 2015-10-21
DESCRIPTION | 10 +++---- MD5 | 19 +++++++------ NEWS.md |only R/HarmonicWtdMean.R | 2 - R/KS.R | 7 +++- R/NPC.R | 7 +++- R/NormalCF.R | 2 - R/StudentsT.R | 3 +- man/FWE.Rd | 49 +++++++++++++++++++--------------- man/HoggAdapt.Rd | 24 ++++++++-------- man/t2p.Rd | 74 ++++++++++++++++++---------------------------------- 11 files changed, 96 insertions(+), 101 deletions(-)
Title: Capture-Mark-Recapture Analysis using Multiple Non-Invasive
Marks
Description: Capture-mark-recapture analysis with multiple non-invasive marks. The models implemented in 'multimark' combine encounter history data arising from two different non-invasive ``marks'', such as images of left-sided and right-sided pelage patterns of bilaterally asymmetrical species, to estimate abundance and related demographic parameters while accounting for imperfect detection. Bayesian models are specified using simple formulae and fitted using Markov chain Monte Carlo. Addressing deficiencies in currently available software, 'multimark' also provides a user-friendly interface for performing Bayesian multimodel inference using capture-recapture data consisting of a single conventional mark or multiple non-invasive marks.
Author: Brett T. McClintock [aut, cre],
Acho Arnold [ctb, cph] (C original matrix library,
https://github.com/najela/matrix.h),
Barry Brown [ctb] (Fortran original ranlib library),
James Lovato [ctb] (Fortran original ranlib library),
John Burkardt [ctb] (C original ranlib library,
http://people.sc.fsu.edu/~jburkardt/c_src/ranlib),
Cleve Moler [ctb] (C original linpack library,
http://www.kkant.net/geist/ranlib/)
Maintainer: Brett T. McClintock <brett.mcclintock@noaa.gov>
Diff between multimark versions 1.3.0 dated 2015-07-28 and 1.3.1 dated 2015-10-21
DESCRIPTION | 8 MD5 | 40 NAMESPACE | 54 NEWS | 123 + R/CJS.R | 2830 ++++++++++++++++++++++---------------------- R/Closed.R | 2166 ++++++++++++++++----------------- R/multimark_functions.R | 1634 ++++++++++++------------- inst/CITATION | 86 - man/bobcat.Rd | 50 man/getprobsCJS.Rd | 92 - man/getprobsClosed.Rd | 84 - man/markCJS.Rd | 252 +-- man/markClosed.Rd | 188 +- man/multimarkCJS.Rd | 320 ++-- man/multimarkClosed.Rd | 258 ++-- man/multimarksetup-class.Rd | 108 - man/multimodelCJS.Rd | 200 +-- man/multimodelClosed.Rd | 172 +- man/processdata.Rd | 116 - man/simdataCJS.Rd | 126 - man/simdataClosed.Rd | 122 - 21 files changed, 4505 insertions(+), 4524 deletions(-)
Title: Wrapper Functions for FSL (FMRIB Software Library) from
Functional MRI of the Brain (FMRIB)
Description: Wrapper functions that interface with FSL
(http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/), a powerful and commonly-used
neuroimaging software, using system commands. The goal is to be able to
interface with FSL completely in R, where you pass R objects of class "nifti",
implemented by package 'oro.nifti', and the function executes an FSL command
and returns an R object of class "nifti" if desired.
Author: John Muschelli <muschellij2@gmail.com>
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between fslr versions 1.4.4 dated 2015-05-21 and 1.5.0 dated 2015-10-21
fslr-1.4.4/fslr/NEWS |only fslr-1.5.0/fslr/DESCRIPTION | 16 ++++++------ fslr-1.5.0/fslr/MD5 | 27 ++++++++++++-------- fslr-1.5.0/fslr/NAMESPACE | 8 ++++++ fslr-1.5.0/fslr/R/dropEmptyImageDimensions.R | 10 ++++++- fslr-1.5.0/fslr/R/fslfill2.R | 2 - fslr-1.5.0/fslr/R/fslhd.R | 35 +++++++++++++++++++++++---- fslr-1.5.0/fslr/R/ortho2.R | 5 ++- fslr-1.5.0/fslr/R/ortho_diff.R |only fslr-1.5.0/fslr/R/readNIfTI2.R |only fslr-1.5.0/fslr/R/rescale_img.R | 4 ++- fslr-1.5.0/fslr/R/writenii.R |only fslr-1.5.0/fslr/README.md | 4 ++- fslr-1.5.0/fslr/build/vignette.rds |binary fslr-1.5.0/fslr/man/cog.Rd | 4 ++- fslr-1.5.0/fslr/man/ortho_diff.Rd |only fslr-1.5.0/fslr/man/readNIfTI2.Rd |only fslr-1.5.0/fslr/man/writeNIfTI2.Rd |only 18 files changed, 85 insertions(+), 30 deletions(-)
Title: Two-Locus Family-Based Association Test with Polytomic Outcome
Description: Performs family-based association tests with a polytomous outcome under 2-locus and 1-locus models
defined by some design matrix.
Author: Alexandre BUREAU <alexandre.bureau@msp.ulaval.ca> and Jordie Croteau
<jordie.croteau@crulrg.ulaval.ca>
Maintainer: Alexandre BUREAU <alexandre.bureau@msp.ulaval.ca>
Diff between fat2Lpoly versions 1.1.1 dated 2014-10-17 and 1.2.2 dated 2015-10-21
DESCRIPTION | 16 MD5 | 90 NAMESPACE | 6 R/alleles2sums.R | 88 R/calcule.poids.Chen.R | 70 R/calcule.poids.alphafixe.r | 70 R/converti.terme.R | 16 R/cov.score.interfunction.R | 90 R/cov.score.poly.R | 158 R/design.1locus.R | 56 R/design.dichotomique.R | 66 R/design.endo2disease.R | 82 R/design.full.R | 66 R/design.polytomous.R | 416 R/fat2Lpoly.R | 116 R/fat2Lpoly.withinR.R | 555 R/get.scores.pvalues.R | 144 R/ibd.terms.R | 316 R/ibd.terms.w.r | 300 R/produits.paires.R | 16 R/read.merlin.files.R | 394 R/score.poly.R | 50 R/score.poly.w.r | 62 R/scores.covs.R | 552 data/fat2Lpoly.allSNPs.rda |binary data/ped.x.all.rda |binary inst/extdata/loc1.dat | 12 inst/extdata/loc1.freq | 12 inst/extdata/loc1.ibd |32642 ++++++++++++++++++++++---------------------- inst/extdata/loc1.ped | 1280 - inst/extdata/loc2.dat | 12 inst/extdata/loc2.freq | 18 inst/extdata/loc2.ibd |32642 ++++++++++++++++++++++---------------------- inst/extdata/loc2.ped | 1280 - man/design.1locus.Rd | 102 man/design.dichotomous.Rd | 82 man/design.endo2disease.Rd | 100 man/design.full.Rd | 106 man/fat2Lpoly-internal.Rd | 52 man/fat2Lpoly-package.Rd | 108 man/fat2Lpoly.Rd | 392 man/fat2Lpoly.allSNPs.Rd | 50 man/fat2Lpoly.withinR.Rd | 174 man/get.scores.pvalues.Rd | 108 man/ped.x.all.Rd | 80 man/read.merlin.files.Rd | 182 46 files changed, 36619 insertions(+), 36610 deletions(-)
Title: Circular Visualization
Description: Circular layout is an efficient way for the visualization of huge
amounts of information. Here the circlize package provides an implementation
of circular layout generation in R as well as an enhancement of available
software. The flexibility of this package is based on the usage of low-level
graphics functions such that self-defined high-level graphics can be easily
implemented by users for specific purposes. Together with the seamless
connection between the powerful computational and visual environment in R,
circlize gives users more convenience and freedom to design figures for
better understanding complex patterns behind multi-dimensional data.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu@dkfz.de>
Diff between circlize versions 0.3.1 dated 2015-08-18 and 0.3.2 dated 2015-10-21
DESCRIPTION | 12 +++++------ MD5 | 24 +++++++++++----------- NAMESPACE | 1 NEWS | 7 ++++++ R/chordDiagram.R | 5 ++++ R/genomic.R | 4 ++- build/vignette.rds |binary inst/doc/circlize.pdf |binary inst/doc/circular_phylogenetic_tree.pdf |binary inst/doc/circular_visualization_of_matrix.pdf |binary inst/doc/genomic_plot.pdf |binary inst/doc/interesting_graphics.pdf |binary inst/doc/visualize_relations_by_chord_diagram.pdf |binary 13 files changed, 34 insertions(+), 19 deletions(-)
Title: Bagging Whole-Genome Regression
Description: Designed for whole-genome regressions using Bayesian models fitted via Gibbs sampling with optional resampling techniques (Bagging and Bootstrapping) and polygenic term with reduced dimensionality.
Author: Alencar Xavier, William Muir, Katy Rainey.
Maintainer: Alencar Xavier <xaviera@purdue.edu>
Diff between bWGR versions 1.0 dated 2015-09-25 and 1.1 dated 2015-10-21
DESCRIPTION | 12 ++++++------ MD5 | 6 ++++-- R/mkr.R |only man/bWGR.Rd | 6 +++--- man/mkr.Rd |only 5 files changed, 13 insertions(+), 11 deletions(-)
Title: Interactive Graphics for Portfolio Data
Description: Creates an interactive graphics
interface to visualize backtest results of different financial
instruments, such as equities, futures, and credit default swaps.
The package does not run backtests on the given data set but
displays a graphical explanation of the backtest results. Users can
look at backtest graphics for different instruments, investment
strategies, and portfolios. Summary statistics of different
portfolio holdings are shown in the left panel, and interactive
plots of profit and loss (P\&L), net market value (NMV) and
gross market value (GMV) are displayed in the right panel.
Author: as.person(c(
"David Kane <dave.kane@gmail.com> [aut]",
"Ziqi Lu <ziqi.lu@williams.edu> [aut]",
"Fan Zhang <fan.zhang@williams.edu> [aut]",
"Miller Zijie Zhu <zijie.miller.zhu@gmail.com> [aut]"
))
Maintainer: Miller Zijie Zhu <zijie.miller.zhu@gmail.com>
Diff between backtestGraphics versions 0.1.5 dated 2015-08-13 and 0.1.6 dated 2015-10-21
backtestGraphics-0.1.5/backtestGraphics/tests/testthat/test_cumpnl_plot.R |only backtestGraphics-0.1.5/backtestGraphics/tests/testthat/test_cumpnl_plot.RData |only backtestGraphics-0.1.5/backtestGraphics/tests/testthat/test_interactive_plot.R |only backtestGraphics-0.1.5/backtestGraphics/tests/testthat/test_interactive_plot.RData |only backtestGraphics-0.1.6/backtestGraphics/DESCRIPTION | 8 backtestGraphics-0.1.6/backtestGraphics/MD5 | 22 backtestGraphics-0.1.6/backtestGraphics/R/backtestGraphics.R | 986 +++++----- backtestGraphics-0.1.6/backtestGraphics/R/cleanup_column.R | 373 +-- backtestGraphics-0.1.6/backtestGraphics/README.md | 40 backtestGraphics-0.1.6/backtestGraphics/build/vignette.rds |binary backtestGraphics-0.1.6/backtestGraphics/data/datalist | 6 backtestGraphics-0.1.6/backtestGraphics/inst/doc/backtestGraphics.R | 76 backtestGraphics-0.1.6/backtestGraphics/inst/doc/backtestGraphics.pdf |binary backtestGraphics-0.1.6/backtestGraphics/tests/testthat/test_calc_pnl.R | 20 14 files changed, 767 insertions(+), 764 deletions(-)
More information about backtestGraphics at CRAN
Permanent link
Title: Utilities for 'big.matrix' Objects from Package 'bigmemory'
Description: Extend the 'bigmemory' package with various analytics.
Functions 'bigkmeans' and 'binit' may also be used with native R objects.
For 'tapply'-like functions, the bigtabulate package may also be helpful.
For linear algebra support, see 'bigalgebra'. For mutex (locking) support
for advanced shared-memory usage, see 'synchronicity'.
Author: John W. Emerson <jayemerson@gmail.com> and Michael J. Kane <kaneplusplus@gmail.com>
Maintainer: Michael J. Kane <bigmemoryauthors@gmail.com>
Diff between biganalytics versions 1.1.1 dated 2013-04-01 and 1.1.12 dated 2015-10-21
DESCRIPTION | 32 ++--- MD5 | 22 ++- NAMESPACE | 13 +- R/biglm.big.matrix.R | 2 R/kmeans.R | 28 ++-- R/zzz.R | 2 configure.win |only inst |only man/biganalytics-package.Rd | 10 - man/bigkmeans.Rd | 21 +-- man/summary.stat.Rd | 10 - src/kmeans.cpp | 264 ++++++++++++++++++++++++++++++++++++++------ src/summary_stat.cpp | 11 - 13 files changed, 298 insertions(+), 117 deletions(-)
Title: Backward Pipe Operator
Description: Provides a backward-pipe operator for 'magrittr' (%<%) or
'pipeR' (%<<%) that allows for a performing operations from right-to-left.
This is useful in instances where there is right-to-left ordering commonly
observed with nested structures such as trees/directories and markup
languages such as HTML and XML.
Author: Christopher Brown [cre, aut],
Decision Patterns [cph]
Maintainer: Christopher Brown <chris.brown@decisionpatterns.com>
Diff between backpipe versions 0.1.2 dated 2015-09-03 and 0.1.5 dated 2015-10-21
backpipe-0.1.2/backpipe/inst/www |only backpipe-0.1.5/backpipe/DESCRIPTION | 13 ++-- backpipe-0.1.5/backpipe/LICENSE |only backpipe-0.1.5/backpipe/MD5 | 15 ++-- backpipe-0.1.5/backpipe/NEWS |only backpipe-0.1.5/backpipe/README.md | 79 ++++++++++++++++++++++++- backpipe-0.1.5/backpipe/inst/doc/backpipe.Rmd | 53 ++++++++-------- backpipe-0.1.5/backpipe/inst/doc/backpipe.html | 36 ++++++----- backpipe-0.1.5/backpipe/vignettes/backpipe.Rmd | 53 ++++++++-------- 9 files changed, 164 insertions(+), 85 deletions(-)
Title: Core Methods and Classes Used by 'aroma.*' Packages Part of the
Aroma Framework
Description: Core methods and classes used by higher-level aroma.* packages
part of the Aroma Project, e.g. aroma.affymetrix and aroma.cn.
Author: Henrik Bengtsson [aut, cre, cph],
Mark Robinson [ctb],
Ken Simpson [ctb]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between aroma.core versions 2.13.1 dated 2015-05-26 and 2.14.0 dated 2015-10-21
aroma.core-2.13.1/aroma.core/R/whatDataType.R |only aroma.core-2.14.0/aroma.core/DESCRIPTION | 14 - aroma.core-2.14.0/aroma.core/MD5 | 48 +++-- aroma.core-2.14.0/aroma.core/NAMESPACE | 26 ++- aroma.core-2.14.0/aroma.core/NEWS | 14 + aroma.core-2.14.0/aroma.core/R/999.DEPRECATED.R | 85 ++++++++-- aroma.core-2.14.0/aroma.core/R/AromaMicroarrayDataSet.ATTRS.R | 2 aroma.core-2.14.0/aroma.core/R/AromaTabularBinarySet.ATTRS.R | 2 aroma.core-2.14.0/aroma.core/R/ChromosomeExplorer.LAYERS.R | 51 +----- aroma.core-2.14.0/aroma.core/R/ChromosomeExplorer.R | 50 ----- aroma.core-2.14.0/aroma.core/R/CopyNumberSegmentationModel.R | 5 aroma.core-2.14.0/aroma.core/R/Explorer.R | 34 ---- aroma.core-2.14.0/aroma.core/R/GladModel.R | 5 aroma.core-2.14.0/aroma.core/R/SampleAnnotationFile.R | 3 aroma.core-2.14.0/aroma.core/R/fitWHRCModel.matrix.R | 2 aroma.core-2.14.0/aroma.core/man/ChromosomeExplorer.Rd | 2 aroma.core-2.14.0/aroma.core/man/Non-documented_objects.Rd | 17 +- aroma.core-2.14.0/aroma.core/man/RawMirroredAlleleBFractions.Rd | 2 aroma.core-2.14.0/aroma.core/man/RawSequenceReads.Rd | 2 aroma.core-2.14.0/aroma.core/man/SegmentedAlleleBFractions.Rd | 2 aroma.core-2.14.0/aroma.core/man/SegmentedCopyNumbers.Rd | 2 aroma.core-2.14.0/aroma.core/man/mergeBoxplotStats.list.Rd | 2 aroma.core-2.14.0/aroma.core/tests/binScatter.R |only aroma.core-2.14.0/aroma.core/tests/colBinnedSmoothing.R |only aroma.core-2.14.0/aroma.core/tests/colKernelSmoothing.R |only aroma.core-2.14.0/aroma.core/tests/fitGenotypeCone.R |only aroma.core-2.14.0/aroma.core/tests/fitMultiDimensionalCone.R |only aroma.core-2.14.0/aroma.core/tests/matrixBlockPolish.R |only aroma.core-2.14.0/aroma.core/tests/mergeBoxplotStats.R |only 29 files changed, 189 insertions(+), 181 deletions(-)