Title: A Google Analytics API Client
Description: Provides functions for accessing and retrieving data from the
Google Analytics APIs (https://developers.google.com/analytics/). Supports
OAuth 2.0 authorization. Package provides access to the Management, Core
Reporting, Multi-Channel Funnels Reporting, Real Time Reporting and
Metadata APIs. Access to all the Google Analytics accounts which the user
has access to. Auto-pagination to return more than 10,000 rows of the
results by combining multiple data requests. Also package provides
shiny app to explore the core reporting API dimensions and metrics.
Author: Artem Klevtsov [aut, cre],
Philipp Upravitelev [ctb],
Olga Shramko [ctb]
Maintainer: Artem Klevtsov <a.a.klevtsov@gmail.com>
Diff between RGA versions 0.2.4 dated 2015-08-31 and 0.3 dated 2015-10-22
RGA-0.2.4/RGA/inst/doc/common-queries.R |only RGA-0.2.4/RGA/inst/doc/common-queries.Rmd |only RGA-0.2.4/RGA/inst/doc/common-queries.html |only RGA-0.2.4/RGA/vignettes/common-queries.Rmd |only RGA-0.3/RGA/DESCRIPTION | 25 +-- RGA-0.3/RGA/MD5 | 163 +++++++++++++------------ RGA-0.3/RGA/NAMESPACE | 18 -- RGA-0.3/RGA/R/accounts.R | 4 RGA-0.3/RGA/R/auth.R | 85 +++++++------ RGA-0.3/RGA/R/convert.R | 108 ++++++---------- RGA-0.3/RGA/R/custom-dims.R | 8 - RGA-0.3/RGA/R/custom-mets.R | 8 - RGA-0.3/RGA/R/custom-sources.R | 4 RGA-0.3/RGA/R/date-ranges.R |only RGA-0.3/RGA/R/env.R |only RGA-0.3/RGA/R/experiments.R | 8 - RGA-0.3/RGA/R/filters.R | 8 - RGA-0.3/RGA/R/ga.R | 23 ++- RGA-0.3/RGA/R/get-data.R | 64 +++++---- RGA-0.3/RGA/R/goals.R | 8 - RGA-0.3/RGA/R/mcf.R | 21 +-- RGA-0.3/RGA/R/metadata.R | 45 +++--- RGA-0.3/RGA/R/mgmt.R | 36 +++-- RGA-0.3/RGA/R/profiles.R | 14 +- RGA-0.3/RGA/R/query.R | 33 ++--- RGA-0.3/RGA/R/realtime.R | 18 -- RGA-0.3/RGA/R/report.R | 74 +++-------- RGA-0.3/RGA/R/request.R | 120 ++++++++---------- RGA-0.3/RGA/R/segments.R | 2 RGA-0.3/RGA/R/unsampled.R | 8 - RGA-0.3/RGA/R/uploads.R |only RGA-0.3/RGA/R/url.R | 29 ++-- RGA-0.3/RGA/R/utils.R | 52 ++----- RGA-0.3/RGA/R/webproperties.R | 14 +- RGA-0.3/RGA/R/zzz.R | 3 RGA-0.3/RGA/README.md | 8 - RGA-0.3/RGA/build/vignette.rds |binary RGA-0.3/RGA/data/ga.rda |binary RGA-0.3/RGA/inst/NEWS.Rd | 17 ++ RGA-0.3/RGA/inst/doc/authorize.Rmd | 18 +- RGA-0.3/RGA/inst/doc/authorize.html | 102 +++++++++------ RGA-0.3/RGA/inst/doc/management-api.html | 52 +++++-- RGA-0.3/RGA/inst/doc/metadata-api.html | 56 +++++--- RGA-0.3/RGA/inst/doc/reporting-api.Rmd | 19 +- RGA-0.3/RGA/inst/doc/reporting-api.html | 73 ++++++----- RGA-0.3/RGA/inst/shiny-examples |only RGA-0.3/RGA/man/authorize.Rd | 6 RGA-0.3/RGA/man/get_custom_dimension.Rd | 5 RGA-0.3/RGA/man/get_custom_metric.Rd | 5 RGA-0.3/RGA/man/get_experiment.Rd | 5 RGA-0.3/RGA/man/get_filter.Rd | 5 RGA-0.3/RGA/man/get_ga.Rd | 16 +- RGA-0.3/RGA/man/get_goal.Rd | 5 RGA-0.3/RGA/man/get_mcf.Rd | 14 +- RGA-0.3/RGA/man/get_profile.Rd | 9 + RGA-0.3/RGA/man/get_realtime.Rd | 4 RGA-0.3/RGA/man/get_unsampled_report.Rd | 5 RGA-0.3/RGA/man/get_upload.Rd |only RGA-0.3/RGA/man/get_webproperty.Rd | 9 + RGA-0.3/RGA/man/list_accounts.Rd | 7 - RGA-0.3/RGA/man/list_custom_dimensions.Rd | 5 RGA-0.3/RGA/man/list_custom_metrics.Rd | 5 RGA-0.3/RGA/man/list_custom_sources.Rd | 5 RGA-0.3/RGA/man/list_dimsmets.Rd | 5 RGA-0.3/RGA/man/list_experiments.Rd | 5 RGA-0.3/RGA/man/list_filters.Rd | 5 RGA-0.3/RGA/man/list_goals.Rd | 5 RGA-0.3/RGA/man/list_profiles.Rd | 7 - RGA-0.3/RGA/man/list_segments.Rd | 5 RGA-0.3/RGA/man/list_unsampled_reports.Rd | 5 RGA-0.3/RGA/man/list_uploads.Rd |only RGA-0.3/RGA/man/list_webproperties.Rd | 9 - RGA-0.3/RGA/man/shiny_dimsmets.Rd |only RGA-0.3/RGA/tests/testthat/test-auth.R | 12 - RGA-0.3/RGA/tests/testthat/test-convert-ga.R | 15 +- RGA-0.3/RGA/tests/testthat/test-convert-mcf.R | 92 +++++++------- RGA-0.3/RGA/tests/testthat/test-convert-mgmt.R | 19 +- RGA-0.3/RGA/tests/testthat/test-metadata.R | 4 RGA-0.3/RGA/tests/testthat/test-url.R | 4 RGA-0.3/RGA/vignettes/authorize.Rmd | 18 +- RGA-0.3/RGA/vignettes/reporting-api.Rmd | 19 +- 81 files changed, 899 insertions(+), 788 deletions(-)
Title: Kernel Smoothing
Description: Kernel smoothers for univariate and multivariate data.
Author: Tarn Duong <tarn.duong@gmail.com>
Maintainer: Tarn Duong <tarn.duong@gmail.com>
Diff between ks versions 1.9.5 dated 2015-10-07 and 1.10.0 dated 2015-10-22
CHANGELOG | 12 ++ DESCRIPTION | 8 - MD5 | 68 ++++++------ NAMESPACE | 7 - R/binning.R | 278 +++++++++++++---------------------------------------- R/kcde.R | 8 - R/kcopula.R | 6 - R/kda.R | 53 +++++----- R/kdde.R | 219 ++++++++++++++++++++++++++++++++++------- R/kde-test.R | 2 R/kde.R | 32 +++--- R/kfe.R | 147 ---------------------------- R/normal.R | 55 ++++------ R/prelim.R | 17 +-- R/selector.R | 86 ++++++++-------- inst/doc/kde.pdf |binary man/Hlscv.Rd | 24 ++-- man/Hns.Rd | 7 - man/Hpi.Rd | 4 man/Hscv.Rd | 4 man/binning.Rd | 18 ++- man/contour.Rd | 2 man/ise.mixt.Rd | 2 man/kcde.Rd | 5 man/kcopula.Rd | 4 man/kda.Rd | 21 ++-- man/kdde.Rd | 13 +- man/kde.Rd | 14 +- man/kroc.Rd | 4 man/ks-internal.Rd | 10 - man/ks-package.Rd | 7 - man/plot.kda.Rd | 6 - man/plot.kdde.Rd | 10 - man/plot.kde.Rd | 6 - man/plotmixt.Rd | 6 - 35 files changed, 538 insertions(+), 627 deletions(-)
Title: Functions for Simple Fisheries Stock Assessment Methods
Description: Functions to perform a variety of simple fish stock assessment methods.
Detailed vignettes are available on the fishR website listed below.
Author: Derek Ogle [aut, cre]
Maintainer: Derek Ogle <derek@derekogle.com>
Diff between FSA versions 0.8.1 dated 2015-10-10 and 0.8.3 dated 2015-10-22
DESCRIPTION | 10 +-- MD5 | 136 ++++++++++++++++++++++++------------------------ R/BluegillJL.R | 19 +++--- R/BrookTroutTH.R | 8 +- R/ChinookArg.R | 12 ++-- R/CodNorwegian.R | 13 ++-- R/CutthroatAL.R | 35 ++++++------ R/Ecoli.R | 12 +++- R/Mirex.R | 18 ++++-- R/PikeNY.R | 21 +++---- R/PikeNYPartial1.R | 27 ++++----- R/SMBassLS.R | 10 +-- R/SMBassWB.R | 47 ++++++++-------- R/SpotVA1.R | 8 +- R/WR79.R | 12 ++-- R/WhitefishLC.R | 33 ++++++----- R/ageComparisons.R | 16 ++--- R/alkIndivAge.R | 2 R/bcFuns.R | 5 - R/capHistConvert.R | 2 R/catchCurve.R | 2 R/chapmanRobson.R | 2 R/depletion.R | 2 R/growthModels.R | 22 +++---- R/metaM.R | 12 ++-- R/mrClosed.R | 2 R/mrOpen.R | 2 R/psdAdd.R | 6 +- R/psdCI.R | 2 R/psdCalc.R | 6 +- R/psdPlot.R | 6 +- R/psdVal.R | 6 +- R/removal.R | 2 R/srStarts.R | 2 R/stockRecruitment.R | 2 man/BluegillJL.Rd | 19 +++--- man/BrookTroutTH.Rd | 8 +- man/ChinookArg.Rd | 13 ++-- man/CodNorwegian.Rd | 13 ++-- man/CutthroatAL.Rd | 36 +++++++----- man/Ecoli.Rd | 13 +++- man/Mirex.Rd | 19 ++++-- man/PikeNY.Rd | 21 +++---- man/PikeNYPartial1.Rd | 27 ++++----- man/SMBassLS.Rd | 10 +-- man/SMBassWB.Rd | 45 ++++++++------- man/SpotVA1.Rd | 8 +- man/WR79.Rd | 12 ++-- man/WhitefishLC.Rd | 33 ++++++----- man/ageBias.Rd | 6 +- man/agePrecision.Rd | 10 +-- man/alkIndivAge.Rd | 2 man/bcFuns.Rd | 7 +- man/capHistConvert.Rd | 2 man/catchCurve.Rd | 2 man/chapmanRobson.Rd | 2 man/depletion.Rd | 2 man/growthModels.Rd | 22 +++---- man/metaM.Rd | 12 ++-- man/mrClosed.Rd | 2 man/mrOpen.Rd | 2 man/psdAdd.Rd | 6 +- man/psdCI.Rd | 2 man/psdCalc.Rd | 6 +- man/psdPlot.Rd | 6 +- man/psdVal.Rd | 6 +- man/removal.Rd | 2 man/srStarts.Rd | 2 man/stockRecruitment.Rd | 2 69 files changed, 475 insertions(+), 427 deletions(-)
Title: Estimation of Distribution Algorithms Based on Copulas
Description: Provides a platform where EDAs (estimation of
distribution algorithms) based on copulas can be implemented and
studied. The package offers complete implementations of various
EDAs based on copulas and vines, a group of well-known
optimization problems, and utility functions to study the
performance of the algorithms. Newly developed EDAs can be easily
integrated into the package by extending an S4 class with generic
functions for their main components.
Author: Yasser Gonzalez-Fernandez [aut, cre],
Marta Soto [aut]
Maintainer: Yasser Gonzalez-Fernandez <ygonzalezfernandez@gmail.com>
Diff between copulaedas versions 1.4.1 dated 2014-06-21 and 1.4.2 dated 2015-10-22
copulaedas-1.4.1/copulaedas/src |only copulaedas-1.4.2/copulaedas/DESCRIPTION | 30 ++++--- copulaedas-1.4.2/copulaedas/MD5 | 69 ++++++++-------- copulaedas-1.4.2/copulaedas/NAMESPACE | 10 +- copulaedas-1.4.2/copulaedas/NEWS | 20 +++- copulaedas-1.4.2/copulaedas/R/CEDA.R | 24 ++--- copulaedas-1.4.2/copulaedas/R/EDA.R | 26 +++--- copulaedas-1.4.2/copulaedas/R/VEDA.R | 34 +++----- copulaedas-1.4.2/copulaedas/R/edaCriticalPopSize.R | 28 +++--- copulaedas-1.4.2/copulaedas/R/edaIndepRuns.R | 46 +++++------ copulaedas-1.4.2/copulaedas/R/edaOptimize.R | 24 ++--- copulaedas-1.4.2/copulaedas/R/edaReplace.R | 24 ++--- copulaedas-1.4.2/copulaedas/R/edaReport.R | 24 ++--- copulaedas-1.4.2/copulaedas/R/edaRun.R | 34 ++++---- copulaedas-1.4.2/copulaedas/R/edaSeed.R | 26 +++--- copulaedas-1.4.2/copulaedas/R/edaSelect.R | 24 ++--- copulaedas-1.4.2/copulaedas/R/edaTerminate.R | 24 ++--- copulaedas-1.4.2/copulaedas/R/margins.R | 26 +++--- copulaedas-1.4.2/copulaedas/R/problems.R | 24 ++--- copulaedas-1.4.2/copulaedas/inst/CITATION | 35 ++++---- copulaedas-1.4.2/copulaedas/man/CEDA-class.Rd | 42 +++++----- copulaedas-1.4.2/copulaedas/man/EDA-class.Rd | 20 ++-- copulaedas-1.4.2/copulaedas/man/EDAResult-class.Rd | 18 ++-- copulaedas-1.4.2/copulaedas/man/EDAResults-class.Rd | 14 +-- copulaedas-1.4.2/copulaedas/man/VEDA-class.Rd | 74 +++++++++--------- copulaedas-1.4.2/copulaedas/man/edaCriticalPopSize.Rd | 24 ++--- copulaedas-1.4.2/copulaedas/man/edaIndepRuns.Rd | 6 - copulaedas-1.4.2/copulaedas/man/edaOptimize.Rd | 16 +-- copulaedas-1.4.2/copulaedas/man/edaReplace.Rd | 14 +-- copulaedas-1.4.2/copulaedas/man/edaReport.Rd | 22 ++--- copulaedas-1.4.2/copulaedas/man/edaRun.Rd | 34 ++++---- copulaedas-1.4.2/copulaedas/man/edaSeed.Rd | 20 ++-- copulaedas-1.4.2/copulaedas/man/edaSelect.Rd | 21 ++--- copulaedas-1.4.2/copulaedas/man/edaTerminate.Rd | 32 +++---- copulaedas-1.4.2/copulaedas/man/margins.Rd | 60 +++++++------- copulaedas-1.4.2/copulaedas/man/problems.Rd | 27 +++--- 36 files changed, 502 insertions(+), 494 deletions(-)
Title: Weighted Scores Method for Regression Models with Dependent Data
Description: Has functions to implement the weighted scores method and CL1 information criteria as an intermediate step for variable/correlation selection for longitudinal categorical and count data in Nikoloulopoulos, Joe and Chaganty (2011, Biostatistics, 12: 653-665) and Nikoloulopoulos (2015a,2015b).
Author: A. K. Nikoloulopoulos <A.Nikoloulopoulos@uea.ac.uk> and H. Joe <harry.joe@ubc.ca>
Maintainer: Aristidis K. Nikoloulopoulos <A.Nikoloulopoulos@uea.ac.uk>
Diff between weightedScores versions 0.9.1 dated 2014-11-06 and 0.9.5.1 dated 2015-10-22
DESCRIPTION | 12 - INDEX | 21 +-- MD5 | 58 ++++++-- NAMESPACE | 23 ++- R/CLIC-ord.R |only R/exchmvn.R |only R/mvn.deriv.R |only R/mvnapp.R |only R/ord.reg.univar.R |only R/wtsc-ord.R |only data/arthritis.rda |only man/CLIC.Rd |only man/arthritis.Rd |only man/bcl.Rd | 145 ++++++++++----------- man/cl1.Rd | 273 +++++++++++++++++++++++----------------- man/exchmvn.Rd |only man/godambe.Rd | 354 +++++++++++++++++++++++++++++++--------------------- man/iee.Rd | 169 ++++++++++++------------ man/iee.ord.Rd |only man/marglik.Rd | 104 +++++++-------- man/margmodel.Rd | 149 ++++++++++++--------- man/mvn.deriv.Rd |only man/mvnapp.Rd |only man/scoreCov.Rd | 68 +++++---- man/solvewtsc.Rd | 322 ++++++++++++++++++++++++++++------------------- man/weightMat.Rd | 289 +++++++++++++++++++++++++----------------- man/wtsc.Rd | 149 +++++++++++---------- man/wtsc.wrapper.Rd | 214 ++++++++++++++++--------------- src |only 29 files changed, 1349 insertions(+), 1001 deletions(-)
More information about weightedScores at CRAN
Permanent link
Title: Simple TCGA Data Access for Integrated Statistical Analysis in R
Description: Automatically downloads and processes TCGA genomics and clinical data into a format convenient for statistical analyses in the R environment.
Author: Ying-Wooi Wan, Genevera I. Allen, Matthew L. Anderson, Zhandong Liu
Maintainer: Ying-Wooi Wan <yingwoow@bcm.edu>
Diff between TCGA2STAT versions 1.0 dated 2015-07-17 and 1.2 dated 2015-10-22
TCGA2STAT-1.0/TCGA2STAT/man/GeneMerge.Rd |only TCGA2STAT-1.2/TCGA2STAT/DESCRIPTION | 12 TCGA2STAT-1.2/TCGA2STAT/MD5 | 39 +- TCGA2STAT-1.2/TCGA2STAT/NAMESPACE | 2 TCGA2STAT-1.2/TCGA2STAT/R/TCGA2STAT.R | 394 +++++++++++++---------- TCGA2STAT-1.2/TCGA2STAT/build |only TCGA2STAT-1.2/TCGA2STAT/inst |only TCGA2STAT-1.2/TCGA2STAT/man/OMICSBind.Rd |only TCGA2STAT-1.2/TCGA2STAT/man/SampleSplit.Rd | 4 TCGA2STAT-1.2/TCGA2STAT/man/TCGA2STAT-package.Rd | 23 - TCGA2STAT-1.2/TCGA2STAT/man/TumorNormalMatch.Rd | 9 TCGA2STAT-1.2/TCGA2STAT/man/geneinfo.Rd | 4 TCGA2STAT-1.2/TCGA2STAT/man/getTCGA.Rd | 44 +- TCGA2STAT-1.2/TCGA2STAT/vignettes |only 14 files changed, 303 insertions(+), 228 deletions(-)
Title: Character String Processing Facilities
Description: Allows for fast, correct, consistent, portable,
as well as convenient character string/text processing in every locale
and any native encoding. Owing to the use of the ICU library,
the package provides R users with platform-independent functions
known to Java, Perl, Python, PHP, and Ruby programmers. Among available
features there are: pattern searching (e.g., with ICU Java-like regular
expressions or the Unicode Collation Algorithm), random string generation,
case mapping, string transliteration, concatenation,
Unicode normalization, date-time formatting and parsing, etc.
Author: Marek Gagolewski and Bartek Tartanus (stringi source code);
IBM and other contributors (ICU4C 55.1 source code);
Unicode, Inc. (Unicode Character Database)
Maintainer: Marek Gagolewski <gagolews@rexamine.com>
Diff between stringi versions 0.5-5 dated 2015-06-29 and 1.0-1 dated 2015-10-22
DESCRIPTION | 18 - INSTALL | 18 + LICENSE | 58 +++ MD5 | 53 +-- NEWS | 13 R/compare.R | 210 -------------- R/encoding_detection.R | 12 R/join.R | 8 R/sort.R |only R/trans_casemap.R | 4 R/trans_normalization.R | 20 - configure | 20 - man/stri_duplicated.Rd | 2 man/stri_order.Rd | 2 man/stri_unique.Rd | 2 src/Makevars.win | 6 src/install.libs.R.in | 65 ++++ src/stri_compare.cpp | 568 +++++++++------------------------------ src/stri_container_listutf8.cpp | 2 src/stri_cpp.txt | 1 src/stri_encoding_detection.cpp | 86 +++++ src/stri_exports.h |only src/stri_join.cpp | 292 ++++++++++---------- src/stri_sort.cpp |only src/stri_stringi.cpp | 58 ++- src/stri_stringi.h | 277 +------------------ src/stri_sub.cpp | 18 - src/stri_trans_casemap.cpp | 48 ++- src/stri_trans_normalization.cpp | 173 ++++++++++- 29 files changed, 875 insertions(+), 1159 deletions(-)
Title: Penalized Quantile Regression
Description: Performs penalized quantile regression for LASSO, SCAD and MCP functions including group penalties. Provides a function that automatically generates lambdas and evaluates different models with cross validation or BIC, including a large p version of BIC.
Author: Ben Sherwood
Maintainer: Ben Sherwood <bsherwo2@jhu.edu>
Diff between rqPen versions 1.1 dated 2015-03-15 and 1.2 dated 2015-10-22
DESCRIPTION | 12 - MD5 | 47 ++-- NAMESPACE | 27 ++ NEWS | 9 R/rqPen.R | 460 ++++++++++++++++++++++++++++++++++++++++- man/beta_plots.Rd | 6 man/coef.cv.rq.group.pen.Rd |only man/coef.cv.rq.pen.Rd |only man/cv.rq.group.pen.Rd |only man/cv.rq.pen.Rd | 8 man/cv_plots.Rd | 4 man/getRho.Rd |only man/groupMultLambda.Rd |only man/groupQICD.Rd |only man/group_derivs.Rd |only man/kernel_estimates.Rd |only man/kernel_weights.Rd |only man/mcp.Rd | 4 man/mcp_deriv.Rd | 4 man/model_eval.Rd | 2 man/nonzero.Rd |only man/nonzero.cv.rq.group.pen.Rd |only man/plot.cv.rq.group.pen.Rd |only man/predict.cv.rq.pen.Rd | 2 man/predict.rq.pen.Rd | 4 man/rq.group.fit.Rd |only man/rq.group.lin.prog.Rd |only man/rq.lasso.fit.Rd | 4 man/rq.lasso.fit.mult.Rd |only man/rq.nc.fit.Rd | 9 man/scad.Rd | 4 man/scad_deriv.Rd | 4 32 files changed, 553 insertions(+), 57 deletions(-)
Title: Multiresolution Kriging Based on Markov Random Fields
Description: Functions for the interpolation of large spatial
datasets. This package follows a "fixed rank Kriging" approach using
a large number of basis functions and provides spatial estimates
that are comparable to standard families of covariance functions.
Using a large number of basis functions allows for estimates that
can come close to interpolating the observations (a spatial model
with a small nugget variance.) Moreover, the covariance model for this method
can approximate the Matern covariance family but also allows for a
multi-resolution model and supports efficient computation of the
profile likelihood for estimating covariance parameters. This is
accomplished through compactly supported basis functions and a
Markov random field model for the basis coefficients. These features
lead to sparse matrices for the computations. An extension of this
version over previous ones ( < 5.4 ) is the support for different
geometries besides a rectangular domain.
One benefit of the LatticeKrig model/approach
is the facility to do unconditional and conditional
simulation of the field for large numbers of arbitrary points. There
is also the flexibility for estimating non-stationary covariances. Included are
generic methods for prediction, standard errors for prediction,
plotting of the estimated surface and conditional and unconditional
simulation.
Author: Douglas Nychka [aut, cre], Dorit Hammerling [aut], Stephan Sain [aut], Nathan Lenssen [aut]
Maintainer: Douglas Nychka <nychka@ucar.edu>
Diff between LatticeKrig versions 3.4 dated 2014-08-28 and 5.4 dated 2015-10-22
LatticeKrig-3.4/LatticeKrig/R/LKrig.MRF.precision.R |only LatticeKrig-3.4/LatticeKrig/R/LKrig.cyl.R |only LatticeKrig-3.4/LatticeKrig/R/LKrig.make.a.wght.R |only LatticeKrig-3.4/LatticeKrig/R/LKrig.make.alpha.R |only LatticeKrig-3.4/LatticeKrig/R/LKrig.make.centers.R |only LatticeKrig-3.4/LatticeKrig/R/LKrig.make.grid.info.R |only LatticeKrig-3.4/LatticeKrig/R/LKrig.normalize.basis.R |only LatticeKrig-3.4/LatticeKrig/R/LKrig.setup.R |only LatticeKrig-3.4/LatticeKrig/man/LKinfo.Rd |only LatticeKrig-3.4/LatticeKrig/tests/LKrig.test.NonStationary.R |only LatticeKrig-5.4/LatticeKrig/DESCRIPTION | 23 LatticeKrig-5.4/LatticeKrig/MD5 | 172 ++- LatticeKrig-5.4/LatticeKrig/NAMESPACE | 61 + LatticeKrig-5.4/LatticeKrig/R/BACK |only LatticeKrig-5.4/LatticeKrig/R/GridList.R |only LatticeKrig-5.4/LatticeKrig/R/LKDist.R |only LatticeKrig-5.4/LatticeKrig/R/LKDistComponents.R |only LatticeKrig-5.4/LatticeKrig/R/LKDistGrid.R |only LatticeKrig-5.4/LatticeKrig/R/LKDistGridComponents.R |only LatticeKrig-5.4/LatticeKrig/R/LKGridCheck.R |only LatticeKrig-5.4/LatticeKrig/R/LKGridFindNmax.R |only LatticeKrig-5.4/LatticeKrig/R/LKRectangleFastNormalization.R |only LatticeKrig-5.4/LatticeKrig/R/LKinfoCheck.R |only LatticeKrig-5.4/LatticeKrig/R/LKinfoUpdate.R | 42 LatticeKrig-5.4/LatticeKrig/R/LKrig.MLE.R | 32 LatticeKrig-5.4/LatticeKrig/R/LKrig.R | 362 +++---- LatticeKrig-5.4/LatticeKrig/R/LKrig.basis.R | 119 +- LatticeKrig-5.4/LatticeKrig/R/LKrig.coef.R | 30 LatticeKrig-5.4/LatticeKrig/R/LKrig.cov.R | 87 - LatticeKrig-5.4/LatticeKrig/R/LKrig.cov.plot.R | 6 LatticeKrig-5.4/LatticeKrig/R/LKrig.lnPlike.R | 141 +- LatticeKrig-5.4/LatticeKrig/R/LKrig.make.par.grid.R | 6 LatticeKrig-5.4/LatticeKrig/R/LKrig.misc.R | 56 + LatticeKrig-5.4/LatticeKrig/R/LKrig.precision.R | 67 - LatticeKrig-5.4/LatticeKrig/R/LKrig.quadraticform.R |only LatticeKrig-5.4/LatticeKrig/R/LKrig.sim.R | 54 - LatticeKrig-5.4/LatticeKrig/R/LKrig.sim.conditional.R | 96 + LatticeKrig-5.4/LatticeKrig/R/LKrig.spind2spam.R | 20 LatticeKrig-5.4/LatticeKrig/R/LKrig.traceA.R | 14 LatticeKrig-5.4/LatticeKrig/R/LKrigCovWieghtedObs.R |only LatticeKrig-5.4/LatticeKrig/R/LKrigDefaultFixedFunction.R | 75 + LatticeKrig-5.4/LatticeKrig/R/LKrigDistance.R |only LatticeKrig-5.4/LatticeKrig/R/LKrigFindLambda.R | 132 +- LatticeKrig-5.4/LatticeKrig/R/LKrigLatticeCenters.R |only LatticeKrig-5.4/LatticeKrig/R/LKrigMakewU.R |only LatticeKrig-5.4/LatticeKrig/R/LKrigMakewX.R |only LatticeKrig-5.4/LatticeKrig/R/LKrigNormalizeBasis.R |only LatticeKrig-5.4/LatticeKrig/R/LKrigSAR.R |only LatticeKrig-5.4/LatticeKrig/R/LKrigSetup.R |only LatticeKrig-5.4/LatticeKrig/R/LKrigSetupAlpha.R |only LatticeKrig-5.4/LatticeKrig/R/LKrigSetupAwght.R |only LatticeKrig-5.4/LatticeKrig/R/LKrigSetupLattice.R |only LatticeKrig-5.4/LatticeKrig/R/LKrigUnrollGrid.R | 21 LatticeKrig-5.4/LatticeKrig/R/LatticeKrig.R | 69 - LatticeKrig-5.4/LatticeKrig/R/LatticeKrigEasyDefaults.R |only LatticeKrig-5.4/LatticeKrig/R/ModelBox.R |only LatticeKrig-5.4/LatticeKrig/R/ModelCylinder.R |only LatticeKrig-5.4/LatticeKrig/R/ModelInterval.R |only LatticeKrig-5.4/LatticeKrig/R/ModelRectangle.R |only LatticeKrig-5.4/LatticeKrig/R/ModelRing.R |only LatticeKrig-5.4/LatticeKrig/R/Radial.basis.R | 94 - LatticeKrig-5.4/LatticeKrig/R/Tensor.basis.R |only LatticeKrig-5.4/LatticeKrig/R/WendlandFunction.R |only LatticeKrig-5.4/LatticeKrig/R/convertIndexPeriodic.R |only LatticeKrig-5.4/LatticeKrig/R/createLKrigObject.R |only LatticeKrig-5.4/LatticeKrig/R/directionCosines.R |only LatticeKrig-5.4/LatticeKrig/R/predict.LKrig.R | 75 - LatticeKrig-5.4/LatticeKrig/R/predictLKrigFixedFunction.R | 19 LatticeKrig-5.4/LatticeKrig/R/predictSE.LKrig.R | 130 +- LatticeKrig-5.4/LatticeKrig/R/predictSurface.LKrig.R | 102 +- LatticeKrig-5.4/LatticeKrig/R/print.LKinfo.R | 87 + LatticeKrig-5.4/LatticeKrig/R/print.LKrig.R | 49 LatticeKrig-5.4/LatticeKrig/R/print.LatticeKrig.R |only LatticeKrig-5.4/LatticeKrig/R/setDefaultsLKinfo.R |only LatticeKrig-5.4/LatticeKrig/R/triWeight.R |only LatticeKrig-5.4/LatticeKrig/man/LKDistance.Rd |only LatticeKrig-5.4/LatticeKrig/man/LKRing.Rd |only LatticeKrig-5.4/LatticeKrig/man/LKgeometry.Rd |only LatticeKrig-5.4/LatticeKrig/man/LKinfoCheck.Rd |only LatticeKrig-5.4/LatticeKrig/man/LKrig.MLE.Rd | 76 + LatticeKrig-5.4/LatticeKrig/man/LKrig.Rd | 491 +++++----- LatticeKrig-5.4/LatticeKrig/man/LKrig.basis.Rd | 138 +- LatticeKrig-5.4/LatticeKrig/man/LKrig.fixed.Rd | 3 LatticeKrig-5.4/LatticeKrig/man/LKrig.internal.Rd | 76 - LatticeKrig-5.4/LatticeKrig/man/LKrig.misc.Rd | 60 + LatticeKrig-5.4/LatticeKrig/man/LKrig.sim.Rd | 21 LatticeKrig-5.4/LatticeKrig/man/LKrigDistance-methods.Rd |only LatticeKrig-5.4/LatticeKrig/man/LKrigLatticeCenters.Rd |only LatticeKrig-5.4/LatticeKrig/man/LKrigNormalizeBasisFast.Rd |only LatticeKrig-5.4/LatticeKrig/man/LKrigSAR.Rd |only LatticeKrig-5.4/LatticeKrig/man/LKrigSetup.Rd |only LatticeKrig-5.4/LatticeKrig/man/LKrigSetupAlpha.Rd |only LatticeKrig-5.4/LatticeKrig/man/LKrigSetupAwght.Rd |only LatticeKrig-5.4/LatticeKrig/man/LKrigSetupLattice.Rd |only LatticeKrig-5.4/LatticeKrig/man/LatticeKrig.Rd | 180 ++- LatticeKrig-5.4/LatticeKrig/man/Radial.Basis.Rd | 84 + LatticeKrig-5.4/LatticeKrig/man/gridList-class.Rd |only LatticeKrig-5.4/LatticeKrig/man/setDefaultsLKinfo.Rd |only LatticeKrig-5.4/LatticeKrig/src/LKdist.f |only LatticeKrig-5.4/LatticeKrig/src/LKdistgrid.f |only LatticeKrig-5.4/LatticeKrig/src/dfind1d.f |only LatticeKrig-5.4/LatticeKrig/src/findNorm.f | 3 LatticeKrig-5.4/LatticeKrig/tests/LKrig.FindNorm.test.R | 91 + LatticeKrig-5.4/LatticeKrig/tests/LKrig.FindNorm.test.Rout.save |only LatticeKrig-5.4/LatticeKrig/tests/LKrig.LKCylinder.test.R |only LatticeKrig-5.4/LatticeKrig/tests/LKrig.basis.test.R | 159 ++- LatticeKrig-5.4/LatticeKrig/tests/LKrig.basis.test.Rout.save | 39 LatticeKrig-5.4/LatticeKrig/tests/LKrig.lnPlike.test.Rout.save | 16 LatticeKrig-5.4/LatticeKrig/tests/LKrig.nullspace.test.Rout.save |only LatticeKrig-5.4/LatticeKrig/tests/LKrig.precision.test.R | 226 +--- LatticeKrig-5.4/LatticeKrig/tests/LKrig.precision.test.Rout.save | 39 LatticeKrig-5.4/LatticeKrig/tests/LKrig.se.test.R | 110 +- LatticeKrig-5.4/LatticeKrig/tests/LKrig.se.test.Rout.save | 95 - LatticeKrig-5.4/LatticeKrig/tests/LKrig.test.3D.R |only LatticeKrig-5.4/LatticeKrig/tests/LKrig.test.3D.Rout.save |only LatticeKrig-5.4/LatticeKrig/tests/LKrig.test.R | 59 - LatticeKrig-5.4/LatticeKrig/tests/LKrig.test.Rout.save | 25 LatticeKrig-5.4/LatticeKrig/tests/LKrig.test.inverse.R |only 118 files changed, 2470 insertions(+), 1762 deletions(-)
Title: Data to Support Fish Stock Assessment (FSA) Package
Description: The datasets to support the Fish Stock Assessment (FSA) package.
Author: Derek Ogle [aut, cre]
Maintainer: Derek Ogle <derek@derekogle.com>
Diff between FSAdata versions 0.3.0 dated 2015-10-06 and 0.3.2 dated 2015-10-22
DESCRIPTION | 11 MD5 | 566 ++++++++++++++++++++++++---------------------- NAMESPACE | 2 R/AHerringChile.R | 2 R/AfricanRivers.R | 9 R/AlewifeLH.R | 14 - R/AnchovetaChile.R | 2 R/BGHRfish.R |only R/BGHRsample.R |only R/BSkateGB.R | 19 - R/BassFL.R | 4 R/BlackDrum2001.R |only R/BloaterLH.R | 17 - R/BlueCatfish.R | 8 R/BlueCrab.R | 2 R/BluefishAge.R | 14 - R/BluegillLM.R | 11 R/BluntnoseIL1.R | 14 - R/BrookTroutNC.R | 19 - R/BrookTroutNEWP.R | 2 R/BrookTroutNEWP1.R | 2 R/BrookTroutOnt.R | 21 - R/BrownTroutVC1.R | 21 - R/BullTroutRML1.R | 19 - R/BullTroutRML2.R | 6 R/BullTroutTC.R | 4 R/CCatfishNB.R |only R/Cabezon.R | 8 R/Casselman1990.R | 13 - R/ChinookKR.R | 17 - R/CiscoTL.R | 25 +- R/CrappieARMS.R | 8 R/CreekChub.R |only R/CreelMN.R | 7 R/Croaker1.R | 12 R/Croaker2.R | 2 R/CutthroatALf.R | 17 - R/DarterOnt.R | 4 R/Deckeretal1999.R | 2 R/EuroPerchTJ.R | 2 R/FHCatfish.R | 8 R/FHCatfishATL.R | 2 R/FSAdata.R | 39 +-- R/FWDrumLE2.R | 4 R/Ghats.R | 9 R/GreensCreekMine.R | 2 R/Hake.R | 11 R/HalibutPAC.R | 17 - R/Herman.R | 6 R/HerringBWE.R | 17 - R/HerringISS.R | 19 - R/HumpbackWFCR.R | 21 - R/InchLake1.R | 14 - R/InchLake2.R | 17 - R/JobfishSIO.R | 2 R/Jonubi2.R | 12 R/KingCrabAK.R | 17 - R/LMBassBL.R | 8 R/LMBassLCB.R | 8 R/LakeTroutALTER.R | 14 - R/LakeTroutEggs.R | 9 R/LakeTroutGIS.R | 15 - R/LakeTroutMI.R | 19 - R/Lizardfish.R | 15 - R/LobsterHI.R | 2 R/Menhaden1.R | 2 R/Morwong1.R | 12 R/Morwong2.R | 12 R/Morwong3.R | 12 R/Morwong4a.R | 10 R/MulletBS.R | 12 R/MuskieSLR.R | 12 R/MuskieWI06MR.R | 23 - R/PSalmonAK.R | 19 - R/Pallid.R | 10 R/Pathfinder.R | 2 R/PikeHL.R | 21 - R/PikeNYPartial2.R | 21 - R/PikeWindermere.R | 21 - R/PygmyWFBC.R | 39 +-- R/RBSmeltErie.R | 4 R/RBSmeltLM.R | 8 R/RBTroutKenai.R | 2 R/RBTroutUNSP.R | 17 - R/RWhitefishAI.R | 2 R/RWhitefishIR.R | 2 R/RedDrum.R | 8 R/Riffleshell.R | 23 - R/RockBassL02.R | 12 R/RuffeSLRH92.R | 30 +- R/RuffeTL89.R | 4 R/SLampreyGL.R | 51 ++-- R/SalmonidsMCCA.R | 2 R/SardineLK.R | 2 R/SardinesPacific.R | 58 ++-- R/SculpinALTER.R | 18 - R/ShadCR.R |only R/ShrimpGuam.R | 2 R/SiscowetMI2004.R |only R/Snapper.R | 51 ++-- R/SnapperHG1.R | 10 R/SnapperHG2.R | 10 R/SockeyeKL.R | 57 ++-- R/SockeyeSR.R | 63 ++--- R/SpotVA2.R | 12 R/SpottedSucker1.R | 2 R/StripedBass1.R | 15 - R/StripedBass2.R | 5 R/StripedBass3.R | 11 R/StripedBass4.R | 12 R/StripedBass5.R | 12 R/StripedBass6.R | 12 R/SturgeonBL.R | 63 ++--- R/SturgeonGB.R |only R/SunfishIN.R | 29 +- R/SunfishLP.R | 55 ++-- R/TPrawnsEG.R | 21 - R/TroutperchLM2.R | 8 R/TroutperchLM3.R | 14 - R/VendaceLP.R | 15 - R/VendaceLP2.R | 13 - R/WShrimpGA.R | 17 - R/WalleyeConsumption.R | 2 R/WalleyeEL.R | 17 - R/WalleyeErie.R | 6 R/WalleyeErie2.R | 21 - R/WalleyeKS.R | 2 R/WalleyeMN06a.R | 9 R/WalleyeMN06b.R | 25 +- R/WalleyePL.R | 23 - R/WalleyePS.R | 16 - R/WalleyeWad.R |only R/WalleyeWyrlng.R |only R/WhiteGrunt1.R | 2 R/WhiteGrunt2.R | 8 R/WhitefishLS.R | 9 R/WhitefishMB.R | 14 - R/WhitefishTB.R | 17 - R/YERockfish.R | 6 R/YPerchCB1.R | 2 R/YPerchCB2.R | 15 - R/YPerchGB.R | 2 R/YPerchGL.R | 15 - R/YPerchRL.R | 2 R/YPerchSB.R | 13 - R/YPerchSB1.R | 6 R/YPerchTL.R | 20 - R/YTFlounder.R | 14 - data/BGHRfish.rdata |only data/BGHRsample.rdata |only data/BlackDrum2001.rdata |only data/CCatfishNB.rdata |only data/CreekChub.rdata |only data/ShadCR.rdata |only data/SiscowetMI2004.rdata |only data/SturgeonGB.rdata |only data/WalleyeWad.rdata |only data/WalleyeWyrlng.rdata |only man/AHerringChile.Rd | 2 man/AfricanRivers.Rd | 9 man/AlewifeLH.Rd | 12 man/BGHRfish.Rd |only man/BGHRsample.Rd |only man/BSkateGB.Rd | 15 - man/BassFL.Rd | 2 man/BlackDrum2001.Rd |only man/BloaterLH.Rd | 15 - man/BlueCatfish.Rd | 6 man/BluefishAge.Rd | 12 man/BluegillLM.Rd | 11 man/BluntnoseIL1.Rd | 12 man/BrookTroutNC.Rd | 15 - man/BrookTroutOnt.Rd | 19 - man/BrownTroutVC1.Rd | 17 - man/BullTroutRML1.Rd | 17 - man/BullTroutRML2.Rd | 4 man/BullTroutTC.Rd | 2 man/CCatfishNB.Rd |only man/Cabezon.Rd | 6 man/Casselman1990.Rd | 13 - man/ChinookKR.Rd | 15 - man/CiscoTL.Rd | 23 - man/CrappieARMS.Rd | 7 man/CreekChub.Rd |only man/CreelMN.Rd | 9 man/Croaker1.Rd | 12 man/Croaker2.Rd | 2 man/CutthroatALf.Rd | 17 - man/DarterOnt.Rd | 4 man/Deckeretal1999.Rd | 2 man/EuroPerchTJ.Rd | 2 man/FHCatfish.Rd | 8 man/FHCatfishATL.Rd | 2 man/FSAdata.Rd | 35 +- man/FWDrumLE2.Rd | 4 man/Ghats.Rd | 11 man/GreensCreekMine.Rd | 2 man/Hake.Rd | 9 man/HalibutPAC.Rd | 17 - man/Herman.Rd | 6 man/HerringBWE.Rd | 15 - man/HerringISS.Rd | 17 - man/HumpbackWFCR.Rd | 19 - man/InchLake1.Rd | 14 - man/InchLake2.Rd | 17 - man/JobfishSIO.Rd | 2 man/Jonubi2.Rd | 12 man/KingCrabAK.Rd | 15 - man/LMBassBL.Rd | 8 man/LMBassLCB.Rd | 8 man/LakeTroutALTER.Rd | 14 - man/LakeTroutEggs.Rd | 11 man/LakeTroutGIS.Rd | 13 - man/LakeTroutMI.Rd | 15 - man/Lizardfish.Rd | 13 - man/LobsterHI.Rd | 2 man/Menhaden1.Rd | 2 man/Morwong1.Rd | 12 man/Morwong2.Rd | 12 man/Morwong3.Rd | 12 man/Morwong4a.Rd | 10 man/MulletBS.Rd | 12 man/MuskieSLR.Rd | 12 man/MuskieWI06MR.Rd | 21 - man/PSalmonAK.Rd | 17 - man/Pallid.Rd | 10 man/Pathfinder.Rd | 2 man/PikeHL.Rd | 19 - man/PikeNYPartial2.Rd | 19 - man/PikeWindermere.Rd | 21 - man/PygmyWFBC.Rd | 39 +-- man/RBSmeltErie.Rd | 4 man/RBSmeltLM.Rd | 8 man/RBTroutKenai.Rd | 2 man/RBTroutUNSP.Rd | 15 - man/RWhitefishAI.Rd | 2 man/RWhitefishIR.Rd | 2 man/RedDrum.Rd | 8 man/Riffleshell.Rd | 21 - man/RockBassLO2.Rd | 12 man/RuffeSLRH92.Rd | 30 +- man/RuffeTL89.Rd | 4 man/SLampreyGL.Rd | 21 - man/SalmonidsMCCA.Rd | 2 man/SardineLK.Rd | 2 man/SardinesPacific.Rd | 18 - man/SculpinALTER.Rd | 18 - man/ShadCR.Rd |only man/ShrimpGuam.Rd | 2 man/SiscowetMI2004.Rd |only man/Snapper.Rd | 17 - man/SnapperHG1.Rd | 11 man/SnapperHG2.Rd | 10 man/SockeyeKL.Rd | 21 - man/SockeyeSR.Rd | 24 - man/SpotVA2.Rd | 12 man/SpottedSucker1.Rd | 2 man/StripedBass1.Rd | 15 - man/StripedBass2.Rd | 5 man/StripedBass3.Rd | 9 man/StripedBass4.Rd | 12 man/StripedBass5.Rd | 12 man/StripedBass6.Rd | 12 man/SturgeonBL.Rd | 33 +- man/SturgeonGB.Rd |only man/SunfishIN.Rd | 25 +- man/SunfishLP.Rd | 18 - man/TPrawnsEG.Rd | 19 - man/TroutperchLM2.Rd | 8 man/TroutperchLM3.Rd | 15 - man/VendaceLP.Rd | 11 man/VendaceLP2.Rd | 11 man/WShrimpGA.Rd | 13 - man/WalleyeConsumption.Rd | 2 man/WalleyeEL.Rd | 15 - man/WalleyeErie.Rd | 2 man/WalleyeErie2.Rd | 21 - man/WalleyeKS.Rd | 2 man/WalleyeMN06a.Rd | 8 man/WalleyeMN06b.Rd | 23 - man/WalleyePL.Rd | 21 - man/WalleyePS.Rd | 16 - man/WalleyeWad.Rd |only man/WalleyeWyrlng.Rd |only man/WhiteGrunt1.Rd | 2 man/WhiteGrunt2.Rd | 8 man/WhitefishLS.Rd | 11 man/WhitefishMB.Rd | 14 - man/WhitefishTB.Rd | 17 - man/YERockfish.Rd | 6 man/YPerchCB1.Rd | 2 man/YPerchCB2.Rd | 13 - man/YPerchGB.Rd | 2 man/YPerchGL.Rd | 15 - man/YPerchRL.Rd | 2 man/YPerchSB.Rd | 13 - man/YPerchSB1.Rd | 6 man/YPerchTL.Rd | 20 - man/YTFlounder.Rd | 14 - 299 files changed, 2130 insertions(+), 1861 deletions(-)
Title: Primal or Dual Cone Projections with Routines for Constrained
Regression
Description: Routines doing cone projection and quadratic programming, as well as doing estimation and inference for constrained parametric regression and shape-restricted regression problems.
Author: Mary C. Meyer and Xiyue Liao
Maintainer: Xiyue Liao <xiyue@rams.colostate.edu>
Diff between coneproj versions 1.8 dated 2015-10-03 and 1.9 dated 2015-10-22
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/coneproj.R | 11 ++++++++--- 3 files changed, 14 insertions(+), 9 deletions(-)
Title: Simulating Data to Study Performance of Clustering Algorithms
Description: The utility of this package is in simulating mixtures of Gaussian
distributions with different levels of overlap between mixture
components. Pairwise overlap, defined as a sum of two
misclassification probabilities, measures the degree of
interaction between components and can be readily employed to
control the clustering complexity of datasets simulated from
mixtures. These datasets can then be used for systematic
performance investigation of clustering and finite mixture
modeling algorithms. Among other capabilities of 'MixSim', there
are computing the exact overlap for Gaussian mixtures,
simulating Gaussian and non-Gaussian data, simulating outliers
and noise variables, calculating various measures of agreement
between two partitionings, and constructing parallel
distribution plots for the graphical display of finite mixture
models.
Author: Volodymyr Melnykov [aut],
Wei-Chen Chen [aut, cre],
Ranjan Maitra [aut],
Robert Davies [ctb] (quadratic form probabilities),
Stephen Moshier [ctb] (eigenvalue calculations),
Rouben Rostamian [ctb] (memory allocation)
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between MixSim versions 1.1-1 dated 2015-05-24 and 1.1-2 dated 2015-10-22
MixSim-1.1-1/MixSim/NEWS |only MixSim-1.1-2/MixSim/ChangeLog | 6 ++++++ MixSim-1.1-2/MixSim/DESCRIPTION | 34 +++++++++++++++++++++++----------- MixSim-1.1-2/MixSim/MD5 | 11 +++++------ MixSim-1.1-2/MixSim/NAMESPACE | 4 ++++ MixSim-1.1-2/MixSim/cleanup | 3 ++- MixSim-1.1-2/MixSim/src/libAdjRand.c | 26 +++++++++++++++++++++++++- 7 files changed, 65 insertions(+), 19 deletions(-)
Title: Simulating Data for PLS Mode B Structural Models
Description: A set of functions have been implemented to generate random data to perform Monte Carlo simulations on structural models with formative constructs and interaction and nonlinear effects (Two-Step PLS Mode B structural models). The setup of the true model considers a simple structure with three formative exogenous constructs related to one formative endogenous construct. The routines take into account the interaction and nonlinear effects of the exogenous constructs on the endogenous construct.
Author: Alba Martinez-Ruiz <amartine@ucsc.cl> and Claudia Martinez-Araneda <cmartinez@ucsc.cl>
Maintainer: Alba Martinez-Ruiz <amartine@ucsc.cl>
Diff between dgmb versions 1.1 dated 2014-06-25 and 1.2 dated 2015-10-22
DESCRIPTION | 16 ++++++++-------- MD5 | 30 +++++++++++++++++------------- NAMESPACE | 4 +++- R/dgmbGui.R | 18 +++++++++--------- inst/docs/dgmb-manual.pdf |binary man/ErrEnLV.Rd | 2 +- man/ExoLVsCor.Rd | 5 ++--- man/ExoMVs.Rd | 3 +-- man/IntPar.Rd | 2 +- man/NIEffects.Rd | 3 +-- man/ToProcess.Rd | 2 +- man/ViewHelp.Rd | 2 +- man/dgmb-package.Rd | 17 +++++++++-------- man/dgmbGui.Rd | 29 +++-------------------------- man/figures |only 15 files changed, 57 insertions(+), 76 deletions(-)
Title: Bayesian Graphical Models using MCMC
Description: Interface to the JAGS MCMC library.
Author: Martyn Plummer [aut, cre],
Alexey Stukalov [ctb],
Matt Denwood [ctb]
Maintainer: Martyn Plummer <plummerm@iarc.fr>
Diff between rjags versions 3-15 dated 2015-04-15 and 4-4 dated 2015-10-22
rjags-3-15/rjags/README |only rjags-4-4/rjags/DESCRIPTION | 17 - rjags-4-4/rjags/INSTALL |only rjags-4-4/rjags/MD5 | 36 +-- rjags-4-4/rjags/NAMESPACE | 9 rjags-4-4/rjags/R/jags.R | 36 ++- rjags-4-4/rjags/R/jags.object.R | 3 rjags-4-4/rjags/R/mcarray.R | 43 +++- rjags-4-4/rjags/R/unix/zzz.R.in | 3 rjags-4-4/rjags/R/windows/zzz.R | 3 rjags-4-4/rjags/configure | 353 ++++++++++++++++++++++++----------- rjags-4-4/rjags/configure.ac | 189 ++++++++++++------ rjags-4-4/rjags/man/adapt.Rd | 8 rjags-4-4/rjags/man/coda.samples.Rd | 19 + rjags-4-4/rjags/man/jags.model.Rd | 7 rjags-4-4/rjags/src/Makevars.in | 4 rjags-4-4/rjags/src/Makevars.win | 2 rjags-4-4/rjags/src/jags.cc | 32 +-- rjags-4-4/rjags/src/jags.cc.orig |only rjags-4-4/rjags/src/parallel.cc | 4 rjags-4-4/rjags/src/parallel.cc.orig |only 21 files changed, 524 insertions(+), 244 deletions(-)
Title: Preparing Experimental Data for Statistical Analysis
Description: Prepares data collected in an experimental design for statistical
analysis (e.g., analysis of variance ;ANOVA) by taking the individual data
files and preparing one table that contains several possibilities for
dependent variables. Most suitable when measuring reaction-times and/or
accuracy, or any other variable in an interval or ratio scale. Functions
included: file_merge(), read_data() and prep(). The file_merge() function
vertically merges individual data files (in a long format) in which each line
is a single trial within the experiment to one single dataset. The
read_data() function reads a file in a txt or csv format that contains a
single dataset in a long format table and creates a data frame from it. The
prep() function aggregates the single dataset according to any combination of
between and within grouping variables (i.e., between-subjects and
within-subjects independent variables, respectively), and returns a data
frame with a number of dependent measures for further analysis for each
experimental cell according to the combination of provided grouping
variables. Dependent measures for each experimental cell include among
others means before and after rejecting all values according to a flexible
standard deviation criterion/s, number of rejected values according to the
flexible standard deviation criterion/s, proportions of rejected values
according to the flexible standard deviation criterion/s, number of values
before rejection, means after rejecting values according to procedures
described in Van Selst & Jolicoeur (1994) (suitable when measuring
reaction-times), standard deviations, medians, means according to any
percentile (e.g., 0.05, 0.25, 0.75, 0.95) and harmonic means. The data frame
prep() returns can also be exported as a txt file to be used for statistical
analysis in other statistical programs.
Author: Ayala S. Allon [aut, cre],
Roy Luria [aut],
Jim Grange [ctb],
Nachshon Meiran [ctb]
Maintainer: Ayala S. Allon <ayalaallon@gmail.com>
Diff between prepdat versions 1.0.2 dated 2015-09-01 and 1.0.3 dated 2015-10-22
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NAMESPACE | 5 +++++ NEWS.md | 33 +++++++++++++++++++++++++++++++++ R/prep.R | 16 +++++++--------- README.md | 26 +++++++++++++++++++++++--- 6 files changed, 76 insertions(+), 20 deletions(-)
Title: Numerical Weather Predictions
Description: Access to several Numerical Weather Prediction services both in raster format and as a time series for a location. Currenty it works with GFS, MeteoGalicia, NAM, and RAP.
Author: Oscar Perpinan Lamigueiro [cre, aut],
Marcelo Pinho Almeida [ctb]
Maintainer: Oscar Perpinan Lamigueiro <oscar.perpinan@gmail.com>
Diff between meteoForecast versions 0.47 dated 2015-10-08 and 0.48 dated 2015-10-22
ChangeLog | 81 +++++++++++++++++++++++++++++++++++++++++++++++++++++++----- DESCRIPTION | 8 ++--- MD5 | 6 ++-- man/vars.Rd | 3 ++ 4 files changed, 85 insertions(+), 13 deletions(-)
Title: Kernel Smoothing for Bivariate Copula Densities
Description: Provides fast implementations of kernel smoothing techniques for
bivariate copula densities, in particular density estimation and resampling.
Author: Thomas Nagler [aut, cre]
Maintainer: Thomas Nagler <thomas.nagler@tum.de>
Diff between kdecopula versions 0.3.0 dated 2015-10-06 and 0.4.0 dated 2015-10-22
DESCRIPTION | 6 - MD5 | 19 +-- NEWS.md | 9 + R/eval_tt.R |only R/generics.R | 65 +++++++----- R/helpers.R | 254 +++++++++++++++++++++++++++++++++++++++++++++++--- R/kdecop.R | 125 +++++++++++++++--------- R/kdecopula-package.R | 5 README.md | 5 man/kdecop.Rd | 76 +++++++++----- man/kdecopula.Rd | 5 11 files changed, 439 insertions(+), 130 deletions(-)
Title: Optimal Transport in Various Forms
Description: Solve optimal transport problems in statistics. Compute Wasserstein metrics (a.k.a. Kantorovitch, Fortet--Mourier, Mallows, Earth Mover's, or minimal L_p metrics), return the corresponding transference plans, and display them graphically. Objects that can be compared include grey-scale images, point patterns, and mass vectors.
Author: Dominic Schuhmacher <dominic.schuhmacher@mathematik.uni-goettingen.de> with substantial contributions of code by Bjoern Baehre and Carsten Gottschlich
Maintainer: Dominic Schuhmacher <dominic.schuhmacher@mathematik.uni-goettingen.de>
Diff between transport versions 0.6-3 dated 2014-10-16 and 0.7-0 dated 2015-10-22
DESCRIPTION | 13 - MD5 | 20 - NAMESPACE | 7 NEWS | 35 +++ R/fundament.R | 481 ++++++++++++++++++++++++++++++++++++---------- R/lilhelpers.R | 10 man/transport-internal.Rd | 2 man/transport.Rd | 21 +- man/trcontrol.Rd | 2 src/revsimplex.c | 129 +++++++++++- src/shortsimplex.c | 11 - 11 files changed, 585 insertions(+), 146 deletions(-)
Title: Get Hourly Meteorological Data from Global Stations
Description: Selectively acquire hourly meteorological data from stations located all over the world.
Author: Richard Iannone [aut, cre]
Maintainer: Richard Iannone <riannone@me.com>
Diff between stationaRy versions 0.4 dated 2015-10-12 and 0.4.1 dated 2015-10-22
DESCRIPTION | 11 - MD5 | 6 R/get_isd_station_data.R | 3 README.md | 496 ++++++++++++++++++++++++++++++++++++++++++++++- 4 files changed, 506 insertions(+), 10 deletions(-)
Title: Fitting Semi-Parametric log-Symmetric Regression Models
Description: Set of tools to fit a semi-parametric regression model suitable for analysis of data sets in which the response variable is continuous, strictly positive, asymmetric and possibly, censored. Under this setup, both the median and the skewness of the response variable distribution are explicitly modeled by using semi-parametric functions, whose non-parametric components may be approximated by natural cubic splines or P-splines. Supported distributions for the model error include log-normal, log-Student-t, log-power-exponential, log-hyperbolic, log-contaminated-normal, log-slash, Birnbaum-Saunders and Birnbaum-Saunders-t distributions.
Author: Luis Hernando Vanegas <hvanegasp@gmail.com> and Gilberto A. Paula
Maintainer: Luis Hernando Vanegas <hvanegasp@gmail.com>
Diff between ssym versions 1.5.3 dated 2015-06-04 and 1.5.4 dated 2015-10-22
DESCRIPTION | 9 ++- MD5 | 86 +++++++++++++++++------------------ NAMESPACE | 41 ++++++++++++---- R/envelope.R | 18 ++++--- R/estfun.ssym.R | 2 R/extra.parameter.R | 53 ++++++++++++++++----- R/itpE.R | 23 ++++++--- R/itpE2.R | 20 ++++---- R/itpE3.R | 19 +++++-- R/itpEC.R | 21 +++++--- R/itpEC2.R | 25 ++++++---- R/ncs.R | 2 R/plot.ssym.R | 4 - R/psp.R | 2 R/ssym.l.R | 119 ++++++++++++++++++++++++++++++++++++++----------- R/ssym.l2.R | 119 +++++++++++++++++++++++++++++++++++++++---------- R/ssym.nl.R | 72 +++++++++++++++++++++-------- R/summary.ssym.R | 10 ++-- man/AIC.ssym.Rd | 2 man/BIC.ssym.Rd | 2 man/Ovocytes.Rd | 4 - man/coef.ssym.Rd | 2 man/envelope.Rd | 10 +++- man/extra.parameter.Rd | 5 +- man/fitted.ssym.Rd | 2 man/influence.ssym.Rd | 3 - man/itpE.Rd | 2 man/itpE2.Rd | 2 man/itpE3.Rd | 2 man/itpEC.Rd | 4 - man/itpEC2.Rd | 2 man/logLik.ssym.Rd | 2 man/ncs.Rd | 2 man/np.graph.Rd | 2 man/plot.ssym.Rd | 2 man/psp.Rd | 2 man/residuals.ssym.Rd | 2 man/rvgs.Rd | 6 +- man/ssym-package.Rd | 8 +-- man/ssym.l.Rd | 12 ++-- man/ssym.l2.Rd | 8 ++- man/ssym.nl.Rd | 9 ++- man/summary.ssym.Rd | 4 - man/vcov.ssym.Rd | 2 44 files changed, 510 insertions(+), 238 deletions(-)
Title: Efficiently Read Sequence Data (VCF Format, BCF Format and METAL
Format) into R
Description: Integrate sequencing data (VCF/BCF) or meta-analysis results in R.
Author: Xiaowei Zhan <zhanxw@gmail.com> and Dajiang Liu
<dajiang.liu@gmail.com>, with contributions from Heng Li
<lh3@live.co.uk> (Heng Li wrote tabix and with MIT license
we include tabix source codes).
Maintainer: Xiaowei Zhan <zhanxw@gmail.com>
Diff between seqminer versions 4.9 dated 2015-09-16 and 5.0 dated 2015-10-22
ChangeLog | 8 ++++++++ DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/seqminer.R | 8 ++++++-- inst/CITATION | 6 ++++-- 5 files changed, 26 insertions(+), 12 deletions(-)
Title: Robust Ordinal Regression UTADIS
Description: Implementation of Robust Ordinal Regression for value-based sorting with some extensions and additional tools. It is a novel Multiple-Criteria Decision Aiding (MCDA) framework.
Author: Krzysztof Ciomek
Maintainer: Krzysztof Ciomek <k.ciomek@gmail.com>
Diff between rorutadis versions 0.1.3 dated 2014-07-29 and 0.3.0 dated 2015-10-22
rorutadis-0.1.3/rorutadis/man/removeConstraintsByRestrictions.Rd |only rorutadis-0.3.0/rorutadis/DESCRIPTION | 11 rorutadis-0.3.0/rorutadis/MD5 | 88 rorutadis-0.3.0/rorutadis/NAMESPACE | 9 rorutadis-0.3.0/rorutadis/R/drawing.R | 270 +- rorutadis-0.3.0/rorutadis/R/explanations.R | 217 - rorutadis-0.3.0/rorutadis/R/inconsistencies.R |only rorutadis-0.3.0/rorutadis/R/main.R | 439 +-- rorutadis-0.3.0/rorutadis/R/model.R | 1247 +++------- rorutadis-0.3.0/rorutadis/R/postFactumAnalysis.R | 100 rorutadis-0.3.0/rorutadis/R/problem.R | 9 rorutadis-0.3.0/rorutadis/R/sampling.R |only rorutadis-0.3.0/rorutadis/R/solution.R | 283 +- rorutadis-0.3.0/rorutadis/man/addAssignmentPairwiseAtLeastComparisons.Rd | 3 rorutadis-0.3.0/rorutadis/man/addAssignmentPairwiseAtMostComparisons.Rd | 3 rorutadis-0.3.0/rorutadis/man/addAssignmentsLB.Rd | 3 rorutadis-0.3.0/rorutadis/man/addAssignmentsUB.Rd | 3 rorutadis-0.3.0/rorutadis/man/addMaximalClassCardinalities.Rd | 3 rorutadis-0.3.0/rorutadis/man/addMinimalClassCardinalities.Rd | 3 rorutadis-0.3.0/rorutadis/man/buildProblem.Rd | 3 rorutadis-0.3.0/rorutadis/man/calculateAssignments.Rd | 3 rorutadis-0.3.0/rorutadis/man/calculateExtremeClassCardinalities.Rd | 3 rorutadis-0.3.0/rorutadis/man/calculateStochasticResults.Rd |only rorutadis-0.3.0/rorutadis/man/checkConsistency.Rd | 7 rorutadis-0.3.0/rorutadis/man/compareAssignments.Rd | 9 rorutadis-0.3.0/rorutadis/man/deteriorateAssignment.Rd | 3 rorutadis-0.3.0/rorutadis/man/drawUtilityPlots.Rd | 28 rorutadis-0.3.0/rorutadis/man/explainAssignment.Rd | 10 rorutadis-0.3.0/rorutadis/man/findInconsistencies.Rd |only rorutadis-0.3.0/rorutadis/man/findRepresentativeFunction.Rd | 30 rorutadis-0.3.0/rorutadis/man/findSimpleFunction.Rd |only rorutadis-0.3.0/rorutadis/man/getAssignments.Rd | 19 rorutadis-0.3.0/rorutadis/man/getCharacteristicPoints.Rd | 19 rorutadis-0.3.0/rorutadis/man/getMarginalUtilities.Rd | 19 rorutadis-0.3.0/rorutadis/man/getPreferentialCore.Rd | 3 rorutadis-0.3.0/rorutadis/man/getRestrictions.Rd | 5 rorutadis-0.3.0/rorutadis/man/getThresholds.Rd | 21 rorutadis-0.3.0/rorutadis/man/improveAssignment.Rd | 3 rorutadis-0.3.0/rorutadis/man/investigateUtility.Rd | 5 rorutadis-0.3.0/rorutadis/man/mergeAssignments.Rd | 3 rorutadis-0.3.0/rorutadis/man/plotComprehensiveValue.Rd |only rorutadis-0.3.0/rorutadis/man/plotVF.Rd |only rorutadis-0.3.0/rorutadis/man/removeAssignmentPairwiseAtLeastComparisons.Rd | 3 rorutadis-0.3.0/rorutadis/man/removeAssignmentPairwiseAtMostComparisons.Rd | 3 rorutadis-0.3.0/rorutadis/man/removeAssignmentsLB.Rd | 3 rorutadis-0.3.0/rorutadis/man/removeAssignmentsUB.Rd | 3 rorutadis-0.3.0/rorutadis/man/removeMaximalClassCardinalities.Rd | 3 rorutadis-0.3.0/rorutadis/man/removeMinimalClassCardinalities.Rd | 3 rorutadis-0.3.0/rorutadis/man/rorutadis-package.Rd | 4 49 files changed, 1291 insertions(+), 1615 deletions(-)
Title: Read Tabular Data
Description: Read flat/tabular text files from disk (or a connection).
Author: Hadley Wickham [aut, cre],
Romain Francois [aut],
R Core Team [ctb] (Date time code adapted from R),
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between readr versions 0.2.1 dated 2015-10-21 and 0.2.2 dated 2015-10-22
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- inst/doc/column-types.html | 4 ++-- inst/doc/locales.html | 4 ++-- src/QiParsers.h | 2 -- src/TokenizerDelim.cpp | 9 ++++++++- src/TokenizerDelim.h | 2 +- src/parse.cpp | 2 +- src/read.cpp | 6 +++--- 9 files changed, 28 insertions(+), 23 deletions(-)
Title: Inverse-Regression Estimation of Radioactive Doses
Description: Radioactive doses estimation using individual chromosomal aberrations information. See Higueras M, Puig P, Ainsbury E, Rothkamm K. (2015). A new inverse regression model applied to radiation biodosimetry. Proceedings of the Royal Society A, 471.
Author: David Moriña (Centre for Research in Environmental Epidemiology, CREAL), Manuel Higueras (Universitat Autònoma de Barcelona and Public Health England) and Pedro Puig (Universitat Autònoma de Barcelona)
Maintainer: David Moriña Soler <david.morina@uab.cat>
Diff between radir versions 1.0 dated 2015-01-08 and 1.0.1 dated 2015-10-22
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- NAMESPACE | 13 ++++++++++--- inst/CITATION | 20 ++++++++++++++++++++ man/radir-package.Rd | 19 ------------------- 5 files changed, 40 insertions(+), 32 deletions(-)
Title: A Dependency Management System for Projects and their R Package
Dependencies
Description: Manage the R packages your project depends
on in an isolated, portable, and reproducible way.
Author: Kevin Ushey, Jonathan McPherson, Joe Cheng, Aron Atkins, JJ Allaire
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between packrat versions 0.4.4 dated 2015-06-15 and 0.4.5 dated 2015-10-22
DESCRIPTION | 8 - MD5 | 56 +++++----- NAMESPACE | 3 R/aaa-globals.R | 2 R/augment-rprofile.R | 3 R/clean-search-path.R | 2 R/cranlike-repositories.R | 18 ++- R/dependencies.R | 218 +++++++++++++++++++++++++++-------------- R/downloader.R | 174 +++++++++++++++++++++++++------- R/external.R | 21 +-- R/hooks.R | 2 R/install.R | 23 +++- R/options.R | 12 +- R/packrat-mode.R | 20 +++ R/packrat.R | 45 -------- R/paths.R | 13 +- R/pkg.R | 3 R/restore.R | 15 +- R/snapshot.R | 83 ++++++++------- R/status.R | 2 R/utils.R | 73 ++++++++++++- README.md | 2 inst/resources/init-rprofile.R | 2 inst/resources/init.R | 61 ++++++++--- man/appDependencies.Rd | 8 + man/packrat-external.Rd | 6 - man/packrat-options.Rd | 2 man/repository-management.Rd | 3 man/snapshotImpl.Rd | 7 + 29 files changed, 589 insertions(+), 298 deletions(-)
Title: Statistical Methods for Analysing Multivariate Abundance Data
Description: A set of tools for displaying, modeling and analysing
multivariate abundance data in community ecology. See
'mvabund-package.Rd' for details of overall package organization.
The package is implemented with the Gnu Scientific Library
(http://www.gnu.org/software/gsl/) and Rcpp
(http://dirk.eddelbuettel.com/code/rcpp.html) R / C++ classes.
Author: Yi Wang, Ulrike Naumann, Stephen Wright and David Warton
Maintainer: David Warton <David.Warton@unsw.edu.au>
Diff between mvabund versions 3.10.4 dated 2015-05-12 and 3.11.4 dated 2015-10-22
mvabund-3.10.4/mvabund/configure |only mvabund-3.10.4/mvabund/configure.ac |only mvabund-3.10.4/mvabund/src/Makevars.in |only mvabund-3.10.4/mvabund/src/RtoAnovaCpp.cpp |only mvabund-3.10.4/mvabund/src/RtoGlm.cpp |only mvabund-3.10.4/mvabund/src/RtoGlmAnova.cpp |only mvabund-3.10.4/mvabund/src/RtoGlmSmry.cpp |only mvabund-3.10.4/mvabund/src/RtoSmryCpp.cpp |only mvabund-3.11.4/mvabund/DESCRIPTION | 14 mvabund-3.11.4/mvabund/MD5 | 76 +-- mvabund-3.11.4/mvabund/NAMESPACE | 199 ++++--- mvabund-3.11.4/mvabund/R/RcppExports.R |only mvabund-3.11.4/mvabund/R/RcppVersion.R | 28 - mvabund-3.11.4/mvabund/R/anova.manyany.R | 166 ++++-- mvabund-3.11.4/mvabund/R/anova.manyglm.R | 37 - mvabund-3.11.4/mvabund/R/anova.manylm.R | 55 +- mvabund-3.11.4/mvabund/R/anova.traitglm.R | 8 mvabund-3.11.4/mvabund/R/cv.glm1path.R | 41 - mvabund-3.11.4/mvabund/R/default.plot.mvformula.R | 47 + mvabund-3.11.4/mvabund/R/is.wholenumber.R | 8 mvabund-3.11.4/mvabund/R/manyany.R | 4 mvabund-3.11.4/mvabund/R/manyglm.R | 107 ++-- mvabund-3.11.4/mvabund/R/print.anova.manyglm.R | 10 mvabund-3.11.4/mvabund/R/print.summary.manyglm.R | 10 mvabund-3.11.4/mvabund/R/summary.manyglm.R | 550 +++++++++++----------- mvabund-3.11.4/mvabund/R/summary.manylm.R | 468 +++++++++--------- mvabund-3.11.4/mvabund/R/traitglm.R | 91 ++- mvabund-3.11.4/mvabund/R/transAxis.SW.R | 240 ++++----- mvabund-3.11.4/mvabund/README.md |only mvabund-3.11.4/mvabund/cleanup | 17 mvabund-3.11.4/mvabund/data/Tasmania.RData |binary mvabund-3.11.4/mvabund/data/antTraits.RData |binary mvabund-3.11.4/mvabund/data/solberg.RData |binary mvabund-3.11.4/mvabund/data/spider.RData |binary mvabund-3.11.4/mvabund/data/tikus.RData |binary mvabund-3.11.4/mvabund/man/anova.manyany.Rd | 4 mvabund-3.11.4/mvabund/man/traitglm.Rd | 16 mvabund-3.11.4/mvabund/src/Makevars |only mvabund-3.11.4/mvabund/src/Makevars.win | 5 mvabund-3.11.4/mvabund/src/RcppExports.cpp |only mvabund-3.11.4/mvabund/src/Rinterface.cpp |only mvabund-3.11.4/mvabund/src/glm.cpp | 22 mvabund-3.11.4/mvabund/src/io.cpp | 2 mvabund-3.11.4/mvabund/src/mvabund_types.h |only mvabund-3.11.4/mvabund/src/resampTest.h | 36 + mvabund-3.11.4/mvabund/src/simutility.cpp | 4 46 files changed, 1255 insertions(+), 1010 deletions(-)
Title: Permutations of Multisets in Cool-Lex Order
Description: A set of tools to permute multisets without loops or hash tables and to generate integer partitions. The permutation functions are based on C code from Aaron Williams. Cool-lex order is similar to colexicographical order. The algorithm is described in Williams, A. Loopless Generation of Multiset Permutations by Prefix Shifts. SODA 2009, Symposium on Discrete Algorithms, New York, United States. The permutation code is distributed without restrictions. The code for stable and efficient computation of multinomial coefficients comes from Dave Barber. The code can be download from http://home.comcast.net/~tamivox/dave/multinomial/index.html and is distributed without conditions. The package also generates the integer partitions of a positive, non-zero integer n. The C++ code for this is based on Python code from Jerome Kelleher which can be found here http://jeromekelleher.net/partitions.php. The C++ code and Python code are distributed without conditions.
Author: James Curran, Aaron Williams, Jerome Kelleher, Dave Barber
Maintainer: James Curran <j.curran@auckland.ac.nz>
Diff between multicool versions 0.1-7 dated 2015-08-17 and 0.1-8 dated 2015-10-22
DESCRIPTION | 8 ++--- MD5 | 4 +- R/initMC.r | 94 ++++++++++++++++++++++++++++++------------------------------ 3 files changed, 53 insertions(+), 53 deletions(-)
Title: Estimation of ICA Mixture Models
Description: The icamix package provides R functions as well as a C++ library which facilitate the estimation of ICA mixture models. We have developed and implemented the NSMM-ICA algorithm that currently integrates npEM and Fast-ICA for non-parametric estimation of ICA mixture models. We will continue to build in algorithms that interweave the EM step with other types of ICA techniques.
Author: Xiaotian Zhu, David R. Hunter
Maintainer: Xiaotian Zhu <xiaotian.zhu@abbvie.com>
Diff between icamix versions 1.0.2 dated 2015-04-20 and 1.0.4 dated 2015-10-22
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NAMESPACE | 2 ++ man/EMFASTICAALG.Rd | 7 ++----- man/ESTIMATEDMEMBER.Rd | 3 +-- man/plot.EMFASTICAALG.Rd | 3 +-- man/plot.summary.EMFASTICAALG.Rd | 3 +-- man/print.EMFASTICAALG.Rd | 3 +-- man/print.summary.EMFASTICAALG.Rd | 3 +-- man/summary.EMFASTICAALG.Rd | 3 +-- 10 files changed, 22 insertions(+), 29 deletions(-)
Title: Hot Deck Imputation Methods for Missing Data
Description: Hot deck imputation methods to resolve missing data.
Author: Dieter William Joenssen [aut, cre, cph]
Maintainer: Dieter William Joenssen <Dieter.Joenssen@googlemail.com>
Diff between HotDeckImputation versions 1.0.0 dated 2014-09-28 and 1.1.0 dated 2015-10-22
DESCRIPTION | 20 MD5 | 33 - NAMESPACE | 4 NEWS | 18 R/HotDeckImputation.R | 781 +++++++++++++++++++++++++-------------- R/SeqentialHotDeck.R | 42 +- R/zzz.R | 22 - man/HotDeckImputation-package.Rd | 6 man/impute.CPS_SEQ_HD.Rd | 4 man/impute.NN_HD.Rd | 36 + man/impute.SEQ_HD.Rd | 2 man/impute.mean.Rd | 2 man/match.d_r_odd.Rd | 5 man/match.d_r_vam.Rd | 5 src/Distmatrix.c | 61 ++- src/VAM.c | 2 src/seq_HD.c | 66 +++ src/test_functions.c |only 18 files changed, 771 insertions(+), 338 deletions(-)
More information about HotDeckImputation at CRAN
Permanent link
Title: Forest Growth Model Utilities
Description: Growth models and forest production require existing data manipulation and the creation of new data, structured from basic forest inventory data. The purpose of this package is provide functions to support these activities.
Author: Clayton Vieira Fraga,
Ana Paula Simiqueli,
Wagner Amorim da Silva Altoe
Maintainer: Clayton Vieira Fraga <altoe.wagner@gmail.com>
Diff between Fgmutils versions 0.1 dated 2015-10-14 and 0.2 dated 2015-10-22
DESCRIPTION | 17 ++++++++++------- MD5 | 25 +++++++++++++++++-------- NAMESPACE | 4 +++- NEWS |only R/check.integer.R |only R/converteCampoParaCharacter.R | 8 ++++---- R/getAnoMedicao.R | 30 ++++++++++++++++++++---------- R/listToDataFrame.R |only R/verificaTipoColuna.R | 4 ++-- man/check.integer.Rd |only man/converteCampoParaCharacter.Rd | 8 ++++---- man/getAnoMedicao.Rd | 20 ++++++++++++-------- man/listToDataFrame.Rd |only man/verificaTipoColuna.Rd | 4 ++-- tests |only 15 files changed, 74 insertions(+), 46 deletions(-)
Title: Classification and Regression Training
Description: Misc functions for training and plotting classification and
regression models.
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams, Chris Keefer, Allan Engelhardt, Tony Cooper, Zachary Mayer,
Brenton Kenkel, the R Core Team, Michael Benesty, Reynald Lescarbeau,
Andrew Ziem, Luca Scrucca, Yuan Tang and Can Candan.
Maintainer: Max Kuhn <Max.Kuhn@pfizer.com>
Diff between caret versions 6.0-57 dated 2015-10-11 and 6.0-58 dated 2015-10-22
DESCRIPTION | 8 - MD5 | 36 +++---- R/extractProb.R | 9 - R/ggplot.R | 153 ++++++++++++++++++-------------- R/pcaNNet.R | 16 ++- R/preProcess.R | 90 +++++++++++++++---- R/train.default.R | 17 +++ R/workflows.R | 11 +- inst/NEWS.Rd | 13 ++ man/confusionMatrix.Rd | 2 man/extractPrediction.Rd | 2 man/models.Rd | 221 ++++++++++++++++++++++++++++++++++++++++++++++- man/pcaNNet.Rd | 2 man/plot.rfe.Rd | 2 man/plot.train.Rd | 4 man/preProcess.Rd | 23 +++- man/sensitivity.Rd | 2 man/train.Rd | 2 man/trainControl.Rd | 4 19 files changed, 476 insertions(+), 141 deletions(-)
Title: Table, Apply, and Split Functionality for Matrix and
'big.matrix' Objects
Description: Extend the bigmemory package with 'table', 'tapply', and 'split' support for 'big.matrix' objects. The functions may also be used with native R matrices for improving speed and memory-efficiency.
Author: Michael J. Kane <kaneplusplus@gmail.com> and John W. Emerson <jayemerson@gmail.com>
Maintainer: Michael J. Kane <bigmemoryauthors@gmail.com>
Diff between bigtabulate versions 1.1.2 dated 2013-11-05 and 1.1.4 dated 2015-10-22
bigtabulate-1.1.2/bigtabulate/inst |only bigtabulate-1.1.4/bigtabulate/DESCRIPTION | 24 +++++++-------- bigtabulate-1.1.4/bigtabulate/MD5 | 14 ++++---- bigtabulate-1.1.4/bigtabulate/NAMESPACE | 1 bigtabulate-1.1.4/bigtabulate/R/bigtabulate.R | 8 ++--- bigtabulate-1.1.4/bigtabulate/R/zzz.R | 2 - bigtabulate-1.1.4/bigtabulate/configure | 3 + bigtabulate-1.1.4/bigtabulate/man/bigtabulate-package.Rd | 6 +-- bigtabulate-1.1.4/bigtabulate/src/Makevars |only 9 files changed, 30 insertions(+), 28 deletions(-)