Title: Spatial Survey Design and Analysis
Description: This group of functions implements algorithms for design and
analysis of probability surveys. The functions are tailored for Generalized
Random Tessellation Stratified survey designs.
Author: Tom Kincaid [aut, cre],
Tony Olsen [aut],
Don Stevens [ctb],
Christian Platt [ctb],
Denis White [ctb],
Richard Remington [ctb]
Maintainer: Tom Kincaid <Kincaid.Tom@epa.gov>
Diff between spsurvey versions 3.0 dated 2015-05-22 and 3.1 dated 2015-10-23
spsurvey-3.0/spsurvey/src/insideGridCell.c |only spsurvey-3.0/spsurvey/src/pickSamplePoints.c |only spsurvey-3.0/spsurvey/vignettes/FL_lakes.tab |only spsurvey-3.0/spsurvey/vignettes/IN_streams.tab |only spsurvey-3.0/spsurvey/vignettes/Luck_Ash_streams.dbf |only spsurvey-3.0/spsurvey/vignettes/Luck_Ash_streams.shp |only spsurvey-3.0/spsurvey/vignettes/Luck_Ash_streams.shx |only spsurvey-3.0/spsurvey/vignettes/NE_lakes.dbf |only spsurvey-3.0/spsurvey/vignettes/NE_lakes.prj |only spsurvey-3.0/spsurvey/vignettes/NE_lakes.shp |only spsurvey-3.0/spsurvey/vignettes/NE_lakes.shx |only spsurvey-3.0/spsurvey/vignettes/NLA_2007.tab |only spsurvey-3.0/spsurvey/vignettes/SC_estuaries.tab |only spsurvey-3.0/spsurvey/vignettes/UT_ecoregions.dbf |only spsurvey-3.0/spsurvey/vignettes/UT_ecoregions.prj |only spsurvey-3.0/spsurvey/vignettes/UT_ecoregions.shp |only spsurvey-3.0/spsurvey/vignettes/UT_ecoregions.shx |only spsurvey-3.0/spsurvey/vignettes/decon_data.tab |only spsurvey-3.0/spsurvey/vignettes/lLuck_Ash_streams.prj |only spsurvey-3.1/spsurvey/DESCRIPTION | 11 spsurvey-3.1/spsurvey/MD5 | 173 ++++------ spsurvey-3.1/spsurvey/NAMESPACE | 19 - spsurvey-3.1/spsurvey/R/AAA.R | 2 spsurvey-3.1/spsurvey/R/SpatialDesign-methods.R | 3 spsurvey-3.1/spsurvey/R/change.analysis.R | 13 spsurvey-3.1/spsurvey/R/change.est.R | 13 spsurvey-3.1/spsurvey/R/changevar.mean.R | 11 spsurvey-3.1/spsurvey/R/changevar.prop.R | 11 spsurvey-3.1/spsurvey/R/changevar.size.R | 11 spsurvey-3.1/spsurvey/build/vignette.rds |binary spsurvey-3.1/spsurvey/data/FL_lakes.rda |binary spsurvey-3.1/spsurvey/data/IN_streams.rda |binary spsurvey-3.1/spsurvey/data/Luck_Ash_streams.rda |binary spsurvey-3.1/spsurvey/data/NE_lakes.rda |binary spsurvey-3.1/spsurvey/data/NLA_2007.rda |binary spsurvey-3.1/spsurvey/data/SC_estuaries.rda |binary spsurvey-3.1/spsurvey/data/UT_ecoregions.rda |binary spsurvey-3.1/spsurvey/data/decon_data.rda |binary spsurvey-3.1/spsurvey/inst/CITATION | 4 spsurvey-3.1/spsurvey/inst/NEWS.Rd | 17 + spsurvey-3.1/spsurvey/inst/doc/Area_Analysis.R | 4 spsurvey-3.1/spsurvey/inst/doc/Area_Analysis.Rnw | 12 spsurvey-3.1/spsurvey/inst/doc/Area_Analysis.pdf |binary spsurvey-3.1/spsurvey/inst/doc/Area_Design.R | 55 ++- spsurvey-3.1/spsurvey/inst/doc/Area_Design.Rnw | 16 spsurvey-3.1/spsurvey/inst/doc/Area_Design.pdf |binary spsurvey-3.1/spsurvey/inst/doc/CDF_Analysis.R | 4 spsurvey-3.1/spsurvey/inst/doc/CDF_Analysis.Rnw | 12 spsurvey-3.1/spsurvey/inst/doc/CDF_Analysis.pdf |binary spsurvey-3.1/spsurvey/inst/doc/CDF_Deconvolution.R | 4 spsurvey-3.1/spsurvey/inst/doc/CDF_Deconvolution.Rnw | 14 spsurvey-3.1/spsurvey/inst/doc/CDF_Deconvolution.pdf |binary spsurvey-3.1/spsurvey/inst/doc/CHANGES.pdf |binary spsurvey-3.1/spsurvey/inst/doc/Finite_Analysis.R | 4 spsurvey-3.1/spsurvey/inst/doc/Finite_Analysis.Rnw | 12 spsurvey-3.1/spsurvey/inst/doc/Finite_Analysis.pdf |binary spsurvey-3.1/spsurvey/inst/doc/Finite_Design.R | 55 ++- spsurvey-3.1/spsurvey/inst/doc/Finite_Design.Rnw | 20 - spsurvey-3.1/spsurvey/inst/doc/Finite_Design.pdf |binary spsurvey-3.1/spsurvey/inst/doc/Linear_Analysis.R | 4 spsurvey-3.1/spsurvey/inst/doc/Linear_Analysis.Rnw | 12 spsurvey-3.1/spsurvey/inst/doc/Linear_Analysis.pdf |binary spsurvey-3.1/spsurvey/inst/doc/Linear_Design.R | 55 ++- spsurvey-3.1/spsurvey/inst/doc/Linear_Design.Rnw | 16 spsurvey-3.1/spsurvey/inst/doc/Linear_Design.pdf |binary spsurvey-3.1/spsurvey/inst/doc/README.pdf |binary spsurvey-3.1/spsurvey/inst/doc/Risk_Analysis.R | 4 spsurvey-3.1/spsurvey/inst/doc/Risk_Analysis.Rnw | 16 spsurvey-3.1/spsurvey/inst/doc/Risk_Analysis.pdf |binary spsurvey-3.1/spsurvey/inst/doc/UserGuide.pdf |binary spsurvey-3.1/spsurvey/man/change.analysis.Rd | 13 spsurvey-3.1/spsurvey/man/change.est.Rd | 13 spsurvey-3.1/spsurvey/man/spsurvey-internal.Rd | 5 spsurvey-3.1/spsurvey/src/dbfFileParser.c | 100 ++---- spsurvey-3.1/spsurvey/src/grts.c | 28 - spsurvey-3.1/spsurvey/src/grtsarea.c | 7 spsurvey-3.1/spsurvey/src/grtslin.c | 28 - spsurvey-3.1/spsurvey/src/grtspts.c | 5 spsurvey-3.1/spsurvey/src/insideAreaGridCell.c | 28 - spsurvey-3.1/spsurvey/src/insideLinearGridCell.c | 28 - spsurvey-3.1/spsurvey/src/irsarea.c | 29 - spsurvey-3.1/spsurvey/src/irslin.c | 32 - spsurvey-3.1/spsurvey/src/pickAreaSamplePoints.c | 28 - spsurvey-3.1/spsurvey/src/pickGridCells.c | 11 spsurvey-3.1/spsurvey/src/pickLinearSamplePoints.c | 28 - spsurvey-3.1/spsurvey/src/ranho.c | 5 spsurvey-3.1/spsurvey/src/shapeParser.c | 289 +++++++----------- spsurvey-3.1/spsurvey/src/spsurvey.h | 6 spsurvey-3.1/spsurvey/vignettes/Area_Analysis.Rnw | 12 spsurvey-3.1/spsurvey/vignettes/Area_Design.Rnw | 16 spsurvey-3.1/spsurvey/vignettes/CDF_Analysis.Rnw | 12 spsurvey-3.1/spsurvey/vignettes/CDF_Deconvolution.Rnw | 14 spsurvey-3.1/spsurvey/vignettes/Finite_Analysis.Rnw | 12 spsurvey-3.1/spsurvey/vignettes/Finite_Design.Rnw | 20 - spsurvey-3.1/spsurvey/vignettes/Linear_Analysis.Rnw | 12 spsurvey-3.1/spsurvey/vignettes/Linear_Design.Rnw | 16 spsurvey-3.1/spsurvey/vignettes/Risk_Analysis.Rnw | 16 97 files changed, 743 insertions(+), 677 deletions(-)
Title: An Information About Deputies and Votings in Polish Diet
Description: Set of functions that access information about deputies and votings in Polish diet from webpage http://www.sejm.gov.pl/.
The package was developed as a result of an internship in MI2 Group - http://mi2.mini.pw.edu.pl/, Faculty of Mathematics and Information Science, Warsaw University of Technology.
Author: Piotr Smuda [aut, cre],
Przemyslaw Biecek [aut],
Tomasz Mikolajczyk [ctb]
Maintainer: Piotr Smuda <piotrsmuda@gmail.com>
Diff between sejmRP versions 1.1 dated 2015-09-27 and 1.2 dated 2015-10-23
DESCRIPTION | 11 - MD5 | 67 +++++----- NAMESPACE | 3 R/create_database.R | 6 R/deputies_get_data.R | 2 R/get_deputies_table.R | 28 ++-- R/get_filtered_votes.R | 86 ++++++------- R/get_statements_table.R | 33 ++--- R/get_votes_table.R | 34 ++--- R/get_votings_table.R | 30 ++-- R/safe_html.R |only R/statements_create_table.R | 14 +- R/statements_get_statement.R | 9 - R/statements_get_statements_data.R | 2 R/statements_get_statements_table.R |only R/statements_update_table.R | 33 ++++- R/votes_get_clubs_links.R | 2 R/votes_update_table.R | 12 + R/votings_get_date.R | 2 R/votings_get_votings_links.R | 2 R/votings_update_table.R | 10 + man/create_database.Rd | 3 man/get_deputies_table.Rd | 2 man/get_filtered_votes.Rd | 4 man/get_statements_table.Rd | 4 man/get_votes_table.Rd | 6 man/get_votings_table.Rd | 2 man/safe_html.Rd |only man/statements_get_statement.Rd | 4 man/statements_get_statements_table.Rd |only man/statements_update_table.Rd | 5 man/votes_update_table.Rd | 5 man/votings_update_table.Rd | 5 tests/testthat/test_get_statements_table.R | 2 tests/testthat/test_statements_get_statements_data.R | 2 tests/testthat/test_statements_get_statements_table.R |only vignettes/INSTRUCTION.Rmd | 111 +++++++++--------- 37 files changed, 306 insertions(+), 235 deletions(-)
Title: Functions to Analyze and Visualize Likert Type Items
Description: Functions to analyze and visualize likert type items.
Author: Jason Bryer <jason@bryer.org>, Kimberly Speerschneider
<kimkspeer@gmail.com>
Maintainer: Jason Bryer <jason@bryer.org>
Diff between likert versions 1.2 dated 2014-10-17 and 1.3.0 dated 2015-10-23
DESCRIPTION | 14 ++--- MD5 | 105 +++++++++++++++++++------------------- NAMESPACE | 23 ++++++-- NEWS | 13 ++++ R/likert-package.R | 27 +++++++-- R/likert.R | 37 ++++++++++--- R/plot.histogram.R | 4 + R/plot.likert.bar.r | 115 ++++++++++++++++++++++++++++-------------- R/plot.likert.gap.R | 2 R/plot.likert.heat.r | 2 R/plot.likert.matrix.r | 2 R/shinyLikert.R | 1 R/summary.likert.r | 7 ++ build/vignette.rds |binary data/datalist | 1 data/sasr.rda |only demo/00Index | 1 demo/GroupedFactors.R |only demo/RecodeFactors.R | 2 demo/likert.R | 9 +-- inst/doc/likert-xtable.R | 11 +--- inst/doc/likert-xtable.Rnw | 5 - inst/doc/likert-xtable.pdf |binary inst/shiny/server.R | 2 man/MathAnxiety.Rd | 3 - man/MathAnxietyGender.Rd | 3 - man/abs_formatter.Rd | 3 - man/align.plots.Rd | 3 - man/gap.Rd | 3 - man/label_wrap_mod.Rd | 3 - man/likert-package.Rd | 3 - man/likert.Rd | 9 ++- man/likert.bar.plot.Rd | 20 ++++--- man/likert.density.plot.Rd | 3 - man/likert.heat.plot.Rd | 3 - man/likert.histogram.plot.Rd | 3 - man/likert.matrix.plot.Rd | 3 - man/mass.Rd | 3 - man/pisaitems.Rd | 3 - man/plot.likert.Rd | 3 - man/plot.likert.gap.Rd | 3 - man/print.likert.Rd | 3 - man/print.likert.bar.plot.Rd | 3 - man/print.likert.gap.Rd | 3 - man/print.likert.heat.plot.Rd | 3 - man/print.xlikert.Rd | 3 - man/recode.Rd | 3 - man/reverse.levels.Rd | 3 - man/sasr.Rd |only man/shinyLikert.Rd | 3 - man/summary.likert.Rd | 3 - man/summary.likert.gap.Rd | 3 - man/xtable.likert.Rd | 3 - man/zeroGrob.Rd | 3 - vignettes/likert-xtable.Rnw | 5 - 55 files changed, 322 insertions(+), 176 deletions(-)
Title: Estimation of Diagonal Elements of Sparse Precision-Matrices
Description: Several estimators of the diagonal elements of a sparse precision
(inverse covariance) matrix from a sample of Gaussian vectors for a
given matrix of estimated marginal regression coefficients.
To install package 'gurobi', instructions at
http://user.gurobi.com/download/gurobi-optimizer and
http://www.gurobi.com/documentation/6.0/refman/r_api_overview.html.
Author: Arnak Dalalyan [aut], Samuel Balmand [aut, cre]
Maintainer: Samuel Balmand <Samuel.Balmand@ensg.eu>
Diff between DESP versions 0.1-3 dated 2015-06-16 and 0.1-4 dated 2015-10-23
ChangeLog | 7 ++++++- DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- man/DESP-package.Rd | 4 ++-- man/DESP_MST.Rd | 2 +- man/DESP_PML.Rd | 2 +- man/DESP_RML.Rd | 2 +- man/DESP_RV.Rd | 2 +- man/DESP_SPT.Rd | 2 +- src/Makevars | 2 ++ src/scs/scs.mk | 8 +++++++- 11 files changed, 36 insertions(+), 23 deletions(-)
Title: Differential Evolution Optimization in Pure R
Description: An implementation of the jDE variant of the Differential Evolution
stochastic algorithm for global optimization of nonlinear programming problems.
Author: Eduardo L. T. Conceicao and Martin Maechler [ctb]
Maintainer: Eduardo L. T. Conceicao <mail@eduardoconceicao.org>
Diff between DEoptimR versions 1.0-3 dated 2015-07-19 and 1.0-4 dated 2015-10-23
DESCRIPTION | 12 ++++++------ MD5 | 4 ++-- man/JDEoptim.Rd | 8 ++++---- 3 files changed, 12 insertions(+), 12 deletions(-)
Title: Forecast Verification Routines for the SPECS FP7 Project
Description: A collection of new forecast verification routines for the SPECS FP7 project. The emphasis is on comparative verification of ensemble forecasts.
Author: Stefan Siegert [aut, cre]
Maintainer: Stefan Siegert <s.siegert@exeter.ac.uk>
Diff between SpecsVerification versions 0.4-0 dated 2015-09-11 and 0.4-1 dated 2015-10-23
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NAMESPACE | 2 +- R/Detrend.R | 5 +++-- R/ReliabilityDiagram.R | 23 ++++++++++++++++++++--- man/ClimEns.Rd | 2 +- man/GetDensity.Rd | 2 +- man/PlotDressedEns.Rd | 6 +++--- man/ReliabilityDiagram.Rd | 7 ++++--- 9 files changed, 45 insertions(+), 26 deletions(-)
More information about SpecsVerification at CRAN
Permanent link
Title: Exact Sequential Analysis for Poisson and Binomial Data
Description: Functions to calculate exact critical values, statistical power, expected time to signal and required sample sizes for performing exact sequential analysis. All these calculations can be done for either Poisson or binomial data, for continuous or group sequential analyses, and for different types of rejection boundaries. In case of group sequential analyses, the group sizes do not have to be specified in advance and, for binomial data, the alpha spending can be arbitrarily settled.
Author: Ivair Ramos Silva and Martin Kulldorff
Maintainer: Ivair Ramos Silva <jamesivair@yahoo.com.br>
Diff between Sequential versions 2.0.1 dated 2015-06-19 and 2.0.2 dated 2015-10-23
DESCRIPTION | 10 ++-- MD5 | 36 +++++++-------- NAMESPACE | 3 + R/CV.G.Poisson.R | 2 R/CV.Poisson.R | 13 ++++- R/Performance.G.Poisson.R | 2 R/Performance.Poisson.R | 2 man/Analyze.Binomial.Rd | 36 +++++++-------- man/AnalyzeSetUp.Binomial.Rd | 28 ++++++------ man/CV.Binomial.Rd | 12 ++--- man/CV.G.Binomial.Rd | 10 ++-- man/CV.G.Poisson.Rd | 46 ++++++++++---------- man/CV.Poisson.Rd | 61 +++++++++++++------------- man/Performance.G.Binomial.Rd | 10 ++-- man/Performance.G.Poisson.Rd | 84 ++++++++++++++++++------------------ man/Performance.Poisson.Rd | 96 ++++++++++++++++++++++++++---------------- man/SampleSize.Binomial.Rd | 14 +++--- man/SampleSize.Poisson.Rd | 83 ++++++++++++++++++++---------------- man/Sequential-package.Rd | 22 +++++---- 19 files changed, 311 insertions(+), 259 deletions(-)
Title: Hierarchical Clustering with P-Values via Multiscale Bootstrap
Resampling
Description: An implementation of multiscale bootstrap resampling for
assessing the uncertainty in hierarchical cluster analysis.
It provides AU (approximately unbiased) p-value as well as
BP (bootstrap probability) value for each cluster in a dendrogram.
Author: Ryota Suzuki <suzuki@ef-prime.com>, Hidetoshi Shimodaira
<shimo@sigmath.es.osaka-u.ac.jp>
Maintainer: Ryota Suzuki <suzuki@ef-prime.com>
Diff between pvclust versions 1.3-2 dated 2014-12-22 and 2.0-0 dated 2015-10-23
DESCRIPTION | 8 MD5 | 10 NAMESPACE | 6 R/pvclust-internal.R | 347 ++++++++++++++++++++++++++------ R/pvclust.R | 538 +++++++++++++++++++++++---------------------------- man/pvclust.Rd | 79 +++++-- 6 files changed, 591 insertions(+), 397 deletions(-)
Title: Fast and Versatile Argument Checks
Description: Tests and assertions to perform frequent argument checks. A
substantial part of the package was written in C to minimize any worries
about execution time overhead.
Author: Michel Lang <michellang@gmail.com>,
Bernd Bischl <bernd_bischl@gmx.net>
Maintainer: Michel Lang <michellang@gmail.com>
Diff between checkmate versions 1.6.2 dated 2015-07-26 and 1.6.3 dated 2015-10-23
checkmate-1.6.2/checkmate/NEWS |only checkmate-1.6.3/checkmate/DESCRIPTION | 6 checkmate-1.6.3/checkmate/MD5 | 180 +++++----- checkmate-1.6.3/checkmate/NAMESPACE | 3 checkmate-1.6.3/checkmate/R/AssertCollection.r |only checkmate-1.6.3/checkmate/R/asInteger.r | 14 checkmate-1.6.3/checkmate/R/checkAccess.r | 4 checkmate-1.6.3/checkmate/R/checkArray.r | 4 checkmate-1.6.3/checkmate/R/checkAtomic.r | 4 checkmate-1.6.3/checkmate/R/checkAtomicVector.r | 4 checkmate-1.6.3/checkmate/R/checkCharacter.r | 13 checkmate-1.6.3/checkmate/R/checkChoice.r | 4 checkmate-1.6.3/checkmate/R/checkClass.r | 4 checkmate-1.6.3/checkmate/R/checkComplex.r | 4 checkmate-1.6.3/checkmate/R/checkCount.r | 4 checkmate-1.6.3/checkmate/R/checkDataFrame.r | 13 checkmate-1.6.3/checkmate/R/checkDirectory.r | 4 checkmate-1.6.3/checkmate/R/checkEnvironment.r | 4 checkmate-1.6.3/checkmate/R/checkFactor.r | 11 checkmate-1.6.3/checkmate/R/checkFile.r | 5 checkmate-1.6.3/checkmate/R/checkFlag.r | 4 checkmate-1.6.3/checkmate/R/checkFunction.r | 4 checkmate-1.6.3/checkmate/R/checkInt.r | 4 checkmate-1.6.3/checkmate/R/checkInteger.r | 4 checkmate-1.6.3/checkmate/R/checkIntegerish.r | 4 checkmate-1.6.3/checkmate/R/checkList.r | 4 checkmate-1.6.3/checkmate/R/checkLogical.r | 4 checkmate-1.6.3/checkmate/R/checkMatrix.r | 4 checkmate-1.6.3/checkmate/R/checkNamed.r | 4 checkmate-1.6.3/checkmate/R/checkNames.r | 4 checkmate-1.6.3/checkmate/R/checkNull.r | 4 checkmate-1.6.3/checkmate/R/checkNumber.r | 4 checkmate-1.6.3/checkmate/R/checkNumeric.r | 4 checkmate-1.6.3/checkmate/R/checkPathForOutput.r | 4 checkmate-1.6.3/checkmate/R/checkPercentage.r | 4 checkmate-1.6.3/checkmate/R/checkScalar.r | 4 checkmate-1.6.3/checkmate/R/checkScalarNA.r | 4 checkmate-1.6.3/checkmate/R/checkSetEqual.r | 14 checkmate-1.6.3/checkmate/R/checkString.r | 4 checkmate-1.6.3/checkmate/R/checkSubset.r | 4 checkmate-1.6.3/checkmate/R/checkVector.r | 4 checkmate-1.6.3/checkmate/R/helper.r | 16 checkmate-1.6.3/checkmate/build/vignette.rds |binary checkmate-1.6.3/checkmate/inst/NEWS.md |only checkmate-1.6.3/checkmate/inst/README.md |only checkmate-1.6.3/checkmate/inst/doc/checkmate.R | 26 - checkmate-1.6.3/checkmate/inst/doc/checkmate.Rmd | 52 -- checkmate-1.6.3/checkmate/inst/doc/checkmate.html | 39 -- checkmate-1.6.3/checkmate/man/AssertCollection.Rd |only checkmate-1.6.3/checkmate/man/asInteger.Rd | 9 checkmate-1.6.3/checkmate/man/checkAccess.Rd | 5 checkmate-1.6.3/checkmate/man/checkArray.Rd | 5 checkmate-1.6.3/checkmate/man/checkAtomic.Rd | 5 checkmate-1.6.3/checkmate/man/checkAtomicVector.Rd | 5 checkmate-1.6.3/checkmate/man/checkCharacter.Rd | 5 checkmate-1.6.3/checkmate/man/checkChoice.Rd | 5 checkmate-1.6.3/checkmate/man/checkClass.Rd | 5 checkmate-1.6.3/checkmate/man/checkComplex.Rd | 5 checkmate-1.6.3/checkmate/man/checkCount.Rd | 5 checkmate-1.6.3/checkmate/man/checkDataFrame.Rd | 6 checkmate-1.6.3/checkmate/man/checkDirectory.Rd | 5 checkmate-1.6.3/checkmate/man/checkEnvironment.Rd | 5 checkmate-1.6.3/checkmate/man/checkFactor.Rd | 5 checkmate-1.6.3/checkmate/man/checkFile.Rd | 5 checkmate-1.6.3/checkmate/man/checkFlag.Rd | 5 checkmate-1.6.3/checkmate/man/checkFunction.Rd | 6 checkmate-1.6.3/checkmate/man/checkInt.Rd | 5 checkmate-1.6.3/checkmate/man/checkInteger.Rd | 5 checkmate-1.6.3/checkmate/man/checkIntegerish.Rd | 5 checkmate-1.6.3/checkmate/man/checkList.Rd | 5 checkmate-1.6.3/checkmate/man/checkLogical.Rd | 5 checkmate-1.6.3/checkmate/man/checkMatrix.Rd | 5 checkmate-1.6.3/checkmate/man/checkNamed.Rd | 5 checkmate-1.6.3/checkmate/man/checkNames.Rd | 5 checkmate-1.6.3/checkmate/man/checkNull.Rd | 5 checkmate-1.6.3/checkmate/man/checkNumber.Rd | 5 checkmate-1.6.3/checkmate/man/checkNumeric.Rd | 5 checkmate-1.6.3/checkmate/man/checkPathForOutput.Rd | 5 checkmate-1.6.3/checkmate/man/checkPercentage.Rd | 5 checkmate-1.6.3/checkmate/man/checkScalar.Rd | 5 checkmate-1.6.3/checkmate/man/checkScalarNA.Rd | 5 checkmate-1.6.3/checkmate/man/checkSetEqual.Rd | 9 checkmate-1.6.3/checkmate/man/checkString.Rd | 5 checkmate-1.6.3/checkmate/man/checkSubset.Rd | 5 checkmate-1.6.3/checkmate/man/checkVector.Rd | 5 checkmate-1.6.3/checkmate/src/all_missing.h | 1 checkmate-1.6.3/checkmate/src/any_missing.c | 25 - checkmate-1.6.3/checkmate/src/any_missing.h | 1 checkmate-1.6.3/checkmate/src/qassert.c | 10 checkmate-1.6.3/checkmate/tests/testthat/test_AssertCollection.r |only checkmate-1.6.3/checkmate/tests/testthat/test_checkSetEqual.r | 3 checkmate-1.6.3/checkmate/tests/testthat/test_qtest.r | 20 + checkmate-1.6.3/checkmate/tests/testthat/test_qtestr.r | 3 checkmate-1.6.3/checkmate/vignettes/checkmate.Rmd | 57 ++- 94 files changed, 463 insertions(+), 359 deletions(-)
Title: Extended Mixed Models Using Latent Classes and Latent Processes
Description: Estimation of various extensions of the mixed models including latent class mixed models, joint latent latent class mixed models and mixed models for curvilinear univariate or multivariate longitudinal outcomes using a maximum likelihood estimation method.
Author: Cecile Proust-Lima, Viviane Philipps, Amadou Diakite and Benoit Liquet
Maintainer: Cecile Proust-Lima <cecile.proust-lima@inserm.fr>
Diff between lcmm versions 1.7.2 dated 2015-02-27 and 1.7.3.0 dated 2015-10-23
DESCRIPTION | 8 MD5 | 135 +-- NAMESPACE | 7 NEWS | 18 R/Contlcmm.R | 1470 ++++++++++++++++++++------------------ R/Jointlcmm.R | 289 ++++++- R/Ordlcmm.R | 1109 +++++++++++++++-------------- R/VarCov.Jointlcmm.R | 2 R/VarCov.lcmm.R | 2 R/VarCov.multlcmm.R | 2 R/VarCovRE.hlme.R | 280 +++---- R/VarExpl.Jointlcmm.R | 2 R/VarExpl.lcmm.R | 2 R/VarExpl.multlcmm.R | 7 R/WaldMult.R | 302 ++++--- R/cuminc.R | 22 R/dynpred.R | 44 - R/epoce.R | 7 R/estimates.Jointlcmm.R | 2 R/estimates.lcmm.R | 2 R/estimates.multlcmm.R | 2 R/hlme.R | 1255 +++++++++++++++++---------------- R/lcmm.R | 19 R/multlcmm.R | 1743 ++++++++++++++++++++++++---------------------- R/plot.R | 8 R/plot.predictlink.R | 4 R/plotbaselinerisk.R | 2 R/plotlinkfunction.R | 2 R/plotlinkfunctionmult.R | 43 - R/plotpostprob.R | 2 R/plotresid.R | 2 R/plotsurvival.R | 2 R/postprob.Jointlcmm.R | 2 R/predictL.Jointlcmm.R | 30 R/predictL.lcmm.R | 20 R/predictL.multlcmm.R | 20 R/predictY.Jointlcmm.R | 51 + R/predictY.hlme.R | 18 R/predictY.lcmm.R | 53 + R/predictY.multlcmm.R | 99 +- R/predictlink.Jointlcmm.R | 30 R/predictlink.lcmm.R | 30 R/predictlink.multlcmm.R | 35 R/print.Jointlcmm.R | 13 R/print.hlme.R | 15 R/print.lcmm.R | 17 R/print.multlcmm.R | 16 R/summary.Jointlcmm.R | 751 ++++++++++--------- R/summary.hlme.R | 400 ++++++---- R/summary.lcmm.R | 526 ++++++++----- R/summary.multlcmm.R | 724 ++++++++++--------- R/summarytable.R | 4 inst |only man/Jointlcmm.Rd | 21 man/hlme.Rd | 20 man/lcmm-package.Rd | 4 man/lcmm.Rd | 25 man/multlcmm.Rd | 27 src/AOptim.f90 | 95 ++ src/Jointhet.f90 | 161 ++-- src/Makevars | 1 src/cvpl.f90 | 147 ++- src/hetmixCont.f90 | 190 +++-- src/hetmixContMult.f90 | 308 ++++---- src/hetmixOrd.f90 | 215 ++++- src/hetmixlin.f90 | 106 ++ src/postprob2.f90 | 2 src/predictCont.f90 | 15 src/predictMult.f90 | 13 69 files changed, 6380 insertions(+), 4620 deletions(-)
Title: Tools for the Analysis of Air Pollution Data
Description: Tools to analyse, interpret and understand air
pollution data. Data are typically hourly time series
and both monitoring data and dispersion model output
can be analysed. Many functions can also be applied to
other data, including meteorological and traffic data.
Author: David Carslaw [aut, cre],
Karl Ropkins [aut]
Maintainer: David Carslaw <david.carslaw@york.ac.uk>
Diff between openair versions 1.6 dated 2015-07-23 and 1.6.4 dated 2015-10-23
DESCRIPTION | 12 +++++------ MD5 | 52 ++++++++++++++++++++++++------------------------ R/GoogleMapsPlot.R | 26 ++++++++++++------------ R/RcppExports.R |only R/TheilSen.R | 16 ++++++++++++-- R/aqStats.R | 12 +++++------ R/calendarPlot.R | 4 ++- R/checkPrep.R | 32 ++++++++++++++++------------- R/conditionalQuantile.R | 10 +++++---- R/cutData.R | 4 +-- R/importAURN.R | 8 +++++-- R/openColours.R | 4 +-- R/polarAnnulus.R | 3 +- R/scatterPlot.R | 2 - R/summaryPlot.R | 2 - R/timeAverage.R | 19 ++++++++++------- R/timeProp.R | 2 - R/timeVariation.R | 2 - R/utilities.R | 6 +++-- man/TheilSen.Rd | 6 +++-- man/calendarPlot.Rd | 4 ++- man/openColours.Rd | 4 +-- man/polarAnnulus.Rd | 3 +- man/summaryPlot.Rd | 2 - man/timeAverage.Rd | 17 ++++++++------- man/timeVariation.Rd | 2 - src/Cquantile.cpp | 6 +++-- src/RcppExports.cpp |only 28 files changed, 151 insertions(+), 109 deletions(-)
Title: Penalized Likelihood Estimation and Prediction under the Joint
Cox Models Between Tumour Progression and Death for
Meta-Analysis
Description: Perform regression analyses under the joint Cox proportional hazards model between tumour progression and death for meta-analysis.
The method is applicable for meta-analysis combining several studies or for cluster survival data.
Author: Takeshi Emura
Maintainer: Takeshi Emura <takeshiemura@gmail.com>
Diff between joint.Cox versions 2.2 dated 2015-10-03 and 2.3 dated 2015-10-23
DESCRIPTION | 8 +-- MD5 | 10 +-- NAMESPACE | 3 - R/F.window.R | 121 ++++++++++++++++++++++++++--------------------- man/F.window.Rd | 23 ++------ man/joint.Cox-package.Rd | 4 - 6 files changed, 88 insertions(+), 81 deletions(-)