Title: Maximum Likelihood Estimation and Related Tools
Description: Functions for Maximum Likelihood (ML) estimation and non-linear
optimization, and related tools. It includes a unified way to call
different optimizers, and classes and methods to handle the results from
the ML viewpoint. It also includes a number of convenience tools for testing
and developing your own models.
Author: Ott Toomet <otoomet@gmail.com>,
Arne Henningsen <arne.henningsen@gmail.com>,
with contributions from Spencer Graves and Yves Croissant
Maintainer: Ott Toomet <otoomet@gmail.com>
Diff between maxLik versions 1.2-4 dated 2014-12-31 and 1.3-0 dated 2015-10-24
maxLik-1.2-4/maxLik/man/returnMessage.Rd |only maxLik-1.2-4/maxLik/tests/fitExpDist.R |only maxLik-1.2-4/maxLik/tests/fitExpDist.Rout.save |only maxLik-1.2-4/maxLik/tests/fitNormalDist.R |only maxLik-1.2-4/maxLik/tests/fitNormalDist.Rout.save |only maxLik-1.3-0/maxLik/DESCRIPTION | 20 maxLik-1.3-0/maxLik/MD5 | 116 maxLik-1.3-0/maxLik/NAMESPACE | 12 maxLik-1.3-0/maxLik/NEWS | 17 maxLik-1.3-0/maxLik/R/05-classes.R |only maxLik-1.3-0/maxLik/R/10-MaxControl_class.R |only maxLik-1.3-0/maxLik/R/20-maxControl.R |only maxLik-1.3-0/maxLik/R/25-addControlList.R |only maxLik-1.3-0/maxLik/R/30-addControlDddot.R |only maxLik-1.3-0/maxLik/R/condiNumber.R | 7 maxLik-1.3-0/maxLik/R/logLikAttr.R | 16 maxLik-1.3-0/maxLik/R/maxBFGS.R | 17 maxLik-1.3-0/maxLik/R/maxBFGSR.R | 113 maxLik-1.3-0/maxLik/R/maxBFGSRCompute.R | 88 maxLik-1.3-0/maxLik/R/maxBHHH.R | 4 maxLik-1.3-0/maxLik/R/maxCG.R | 28 maxLik-1.3-0/maxLik/R/maxNM.R | 25 maxLik-1.3-0/maxLik/R/maxNR.R | 95 maxLik-1.3-0/maxLik/R/maxNRCompute.R | 211 + maxLik-1.3-0/maxLik/R/maxOptim.R | 164 - maxLik-1.3-0/maxLik/R/maxSANN.R | 32 maxLik-1.3-0/maxLik/R/openParam.R |only maxLik-1.3-0/maxLik/R/showMaxControl.R |only maxLik-1.3-0/maxLik/R/stdEr.maxLik.R | 4 maxLik-1.3-0/maxLik/R/summary.maxLik.R | 2 maxLik-1.3-0/maxLik/R/sumt.R | 10 maxLik-1.3-0/maxLik/man/activePar.Rd | 13 maxLik-1.3-0/maxLik/man/bread.maxLik.Rd | 21 maxLik-1.3-0/maxLik/man/compareDerivatives.Rd | 49 maxLik-1.3-0/maxLik/man/condiNumber.Rd | 59 maxLik-1.3-0/maxLik/man/estfun.maxLik.Rd | 23 maxLik-1.3-0/maxLik/man/fnSubset.Rd | 83 maxLik-1.3-0/maxLik/man/hessian.Rd | 16 maxLik-1.3-0/maxLik/man/logLik.maxLik.Rd | 4 maxLik-1.3-0/maxLik/man/maxBFGS.Rd | 165 - maxLik-1.3-0/maxLik/man/maxControl.Rd |only maxLik-1.3-0/maxLik/man/maxLik-internal.Rd | 1 maxLik-1.3-0/maxLik/man/maxLik-methods.Rd | 50 maxLik-1.3-0/maxLik/man/maxLik-package.Rd |only maxLik-1.3-0/maxLik/man/maxLik.Rd | 69 maxLik-1.3-0/maxLik/man/maxNR.Rd | 295 +- maxLik-1.3-0/maxLik/man/maximType.Rd | 10 maxLik-1.3-0/maxLik/man/nIter.Rd | 11 maxLik-1.3-0/maxLik/man/nObs.Rd | 15 maxLik-1.3-0/maxLik/man/nParam.Rd | 8 maxLik-1.3-0/maxLik/man/numericGradient.Rd | 33 maxLik-1.3-0/maxLik/man/returnCode.Rd | 42 maxLik-1.3-0/maxLik/man/summary.maxLik.Rd | 51 maxLik-1.3-0/maxLik/man/summary.maxim.Rd | 33 maxLik-1.3-0/maxLik/man/sumt.Rd | 86 maxLik-1.3-0/maxLik/man/vcov.maxLik.Rd | 36 maxLik-1.3-0/maxLik/tests/BFGSR.R | 26 maxLik-1.3-0/maxLik/tests/BFGSR.Rout.save | 68 maxLik-1.3-0/maxLik/tests/constraints.R | 184 + maxLik-1.3-0/maxLik/tests/constraints.Rout.save | 1223 +--------- maxLik-1.3-0/maxLik/tests/examples.R | 35 maxLik-1.3-0/maxLik/tests/examples.Rout.save | 860 +++++-- maxLik-1.3-0/maxLik/tests/finalHessian.Rout.save | 14 maxLik-1.3-0/maxLik/tests/fitNormalDist_privateTest.Rout.save |only maxLik-1.3-0/maxLik/tests/methods.R | 14 maxLik-1.3-0/maxLik/tests/methods.Rout.save | 92 maxLik-1.3-0/maxLik/tests/parameters_privateTest.Rout.save |only 67 files changed, 2417 insertions(+), 2253 deletions(-)
Title: Analysis of Factorial Experiments
Description: Provides convenience functions for analyzing factorial experiments using ANOVA or mixed models. aov_ez(),
aov_car(), and aov_4() allow specification of between, within (i.e., repeated-measures), or mixed between-within
(i.e., split-plot) ANOVAs for data in long format (i.e., one observation per row), potentially aggregating
multiple observations per individual and cell of the design. mixed() fits mixed models using lme4::lmer() and
computes p-values for all fixed effects using either Kenward-Roger approximation for degrees of freedom (LMM
only), parametric bootstrap (LMMs and GLMMs), or likelihood ratio tests (LMMs and GLMMs). afex uses type 3 sums
of squares as default (imitating commercial statistical software).
Author: Henrik Singmann [aut, cre],
Ben Bolker [aut],
Jake Westfall [aut],
Søren Højsgaard [ctb],
John Fox [ctb],
Michael A. Lawrence [ctb],
Ulf Mertens [ctb],
Frederik Aust [ctb]
Maintainer: Henrik Singmann <singmann+afex@gmail.com>
Diff between afex versions 0.14-2 dated 2015-08-17 and 0.15-2 dated 2015-10-24
afex-0.14-2/afex/tests/testthat/test-aov_car-basic.car-basic.R |only afex-0.14-2/afex/tests/testthat/test-aov_car-basic.car-bugs.R |only afex-0.14-2/afex/tests/testthat/test-aov_car-basic.car-structural.R |only afex-0.15-2/afex/DESCRIPTION | 40 afex-0.15-2/afex/MD5 | 77 afex-0.15-2/afex/NAMESPACE | 1 afex-0.15-2/afex/NEWS | 956 +++---- afex-0.15-2/afex/R/afex-package.R | 6 afex-0.15-2/afex/R/allFit.R | 176 - afex-0.15-2/afex/R/aov_car.R | 778 ++--- afex-0.15-2/afex/R/compare.2.vectors.R | 186 - afex-0.15-2/afex/R/deprecated.R | 58 afex-0.15-2/afex/R/ems.R | 214 - afex-0.15-2/afex/R/helpers.R | 96 afex-0.15-2/afex/R/ks2013.3-data.R | 56 afex-0.15-2/afex/R/md_12.1-data.R | 90 afex-0.15-2/afex/R/md_15.1-data.R | 122 afex-0.15-2/afex/R/md_16.1-data.R | 68 afex-0.15-2/afex/R/md_16.4-data.R | 68 afex-0.15-2/afex/R/methods.afex_aov.R | 286 +- afex-0.15-2/afex/R/mixed.R | 1328 +++++----- afex-0.15-2/afex/R/nice.R | 286 +- afex-0.15-2/afex/R/obk.long-data.R | 92 afex-0.15-2/afex/R/round_ps.R | 56 afex-0.15-2/afex/R/set_contrasts.R | 90 afex-0.15-2/afex/R/sk2011.1-data.R | 90 afex-0.15-2/afex/R/sk2011.2-data.R | 64 afex-0.15-2/afex/inst/doc/anova_posthoc.R | 2 afex-0.15-2/afex/inst/doc/anova_posthoc.Rmd | 2 afex-0.15-2/afex/inst/doc/anova_posthoc.html | 154 - afex-0.15-2/afex/man/afex-package.Rd | 6 afex-0.15-2/afex/man/afex_aov-methods.Rd | 11 afex-0.15-2/afex/man/mixed.Rd | 6 afex-0.15-2/afex/man/nice.Rd | 11 afex-0.15-2/afex/tests/testthat.R | 8 afex-0.15-2/afex/tests/testthat/test-afex_aov.R | 106 afex-0.15-2/afex/tests/testthat/test-aov_car-basic.R |only afex-0.15-2/afex/tests/testthat/test-aov_car-bugs.R |only afex-0.15-2/afex/tests/testthat/test-aov_car-structural.R |only afex-0.15-2/afex/tests/testthat/test-mixed-bugs.R |only afex-0.15-2/afex/tests/testthat/test-mixed-mw.R | 92 afex-0.15-2/afex/tests/testthat/test-mixed-structure.R | 324 +- afex-0.15-2/afex/vignettes/anova_posthoc.Rmd | 2 43 files changed, 3029 insertions(+), 2979 deletions(-)
Title: R Interface to FOAAS
Description: R access to the FOAAS (F... Off As A Service) web service is provided.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between rfoaas versions 0.1.6 dated 2015-05-31 and 0.1.8 dated 2015-10-24
ChangeLog | 35 ++++++++++++++++++ DESCRIPTION | 8 ++-- MD5 | 14 +++---- NAMESPACE | 3 + R/foaas.R | 15 +++++++ README.md | 2 - man/rfoaas-package.Rd | 27 ++++++++++++- tests/runTestsAgainstFOAAS.R | 83 ++++++++++++++++++++++++------------------- 8 files changed, 135 insertions(+), 52 deletions(-)
Title: Fit, Simulate and Diagnose Exponential-Family Models for
Networks
Description: An integrated set of tools to analyze and simulate networks based on exponential-family random graph models (ERGM). "ergm" is a part of the "statnet" suite of packages for network analysis.
Author: Mark S. Handcock [aut],
David R. Hunter [aut],
Carter T. Butts [aut],
Steven M. Goodreau [aut],
Pavel N. Krivitsky [aut, cre],
Martina Morris [aut],
Li Wang [ctb],
Kirk Li [ctb],
Skye Bender-deMoll [ctb]
Maintainer: Pavel N. Krivitsky <pavel@uow.edu.au>
Diff between ergm versions 3.4.0 dated 2015-06-16 and 3.5.1 dated 2015-10-24
ergm-3.4.0/ergm/R/edgelist.R |only ergm-3.4.0/ergm/R/ergm.sample.eta2theta.R |only ergm-3.4.0/ergm/man/vector.namesmatch.Rd |only ergm-3.4.0/ergm/tests/samplike_condoutdeg.R |only ergm-3.5.1/ergm/DESCRIPTION | 21 ergm-3.5.1/ergm/MD5 | 109 ++-- ergm-3.5.1/ergm/NAMESPACE | 38 + ergm-3.5.1/ergm/R/InitErgmTerm.R | 26 ergm-3.5.1/ergm/R/InitMHP.blockdiag.R | 105 +++ ergm-3.5.1/ergm/R/approx.hotelling.diff.test.R | 48 + ergm-3.5.1/ergm/R/build_term_index.R | 617 +++++++++++------------ ergm-3.5.1/ergm/R/ergm.CD.fixed.R | 12 ergm-3.5.1/ergm/R/ergm.MCMCse.R | 141 +---- ergm-3.5.1/ergm/R/ergm.MCMCse.lognormal.R | 113 +--- ergm-3.5.1/ergm/R/ergm.MCMLE.R | 19 ergm-3.5.1/ergm/R/ergm.R | 266 +++++---- ergm-3.5.1/ergm/R/ergm.bridge.R | 5 ergm-3.5.1/ergm/R/ergm.estimate.R | 2 ergm-3.5.1/ergm/R/ergm.llik.R | 5 ergm-3.5.1/ergm/R/ergm.llik.obs.R | 44 - ergm-3.5.1/ergm/R/ergm.model.utils.R | 23 ergm-3.5.1/ergm/R/ergm.san.R | 5 ergm-3.5.1/ergm/R/ergm.utility.R | 2 ergm-3.5.1/ergm/R/formula.utils.R | 82 --- ergm-3.5.1/ergm/R/is.curved.R |only ergm-3.5.1/ergm/R/is.inCH.R | 23 ergm-3.5.1/ergm/R/logLik.ergm.R | 4 ergm-3.5.1/ergm/R/mcmc.diagnostics.ergm.R | 12 ergm-3.5.1/ergm/R/parallel.utils.R | 26 ergm-3.5.1/ergm/inst/NEWS.Rd | 128 +++- ergm-3.5.1/ergm/inst/doc/ergm-term-crossRef.html | 35 - ergm-3.5.1/ergm/inst/doc/ergm.pdf |binary ergm-3.5.1/ergm/man/Getting.Started.Rd | 13 ergm-3.5.1/ergm/man/as.edgelist.Rd | 50 - ergm-3.5.1/ergm/man/control.ergm.Rd | 21 ergm-3.5.1/ergm/man/ergm-constraints.Rd | 12 ergm-3.5.1/ergm/man/ergm-package.Rd | 13 ergm-3.5.1/ergm/man/ergm-parallel.Rd | 2 ergm-3.5.1/ergm/man/ergm-terms.Rd | 54 +- ergm-3.5.1/ergm/man/ergm.Rd | 13 ergm-3.5.1/ergm/man/ergm.init.methods.Rd | 12 ergm-3.5.1/ergm/man/ergm.mple.Rd | 2 ergm-3.5.1/ergm/man/ergm_formula_utils.Rd | 38 - ergm-3.5.1/ergm/man/is.curved.Rd |only ergm-3.5.1/ergm/man/mcmc.diagnostics.ergm.Rd | 9 ergm-3.5.1/ergm/man/standardize.network.Rd | 3 ergm-3.5.1/ergm/man/vcov.ergm.Rd | 4 ergm-3.5.1/ergm/src/MHproposals_block.c | 100 +++ ergm-3.5.1/ergm/src/changestats.c | 12 ergm-3.5.1/ergm/src/changestats.h | 2 ergm-3.5.1/ergm/tests/constrain_blockdiag.R | 36 + ergm-3.5.1/ergm/tests/constrain_degrees.R | 3 ergm-3.5.1/ergm/tests/constrain_observed.R | 4 ergm-3.5.1/ergm/tests/constraint_conflict.R | 10 ergm-3.5.1/ergm/tests/estflo.R | 4 ergm-3.5.1/ergm/tests/miss_tests.R | 1 ergm-3.5.1/ergm/tests/off/samplike_condoutdeg.R |only ergm-3.5.1/ergm/tests/target_offset.R | 20 ergm-3.5.1/ergm/tests/termTests.flexible.R | 14 59 files changed, 1289 insertions(+), 1074 deletions(-)
Title: Common R Scripts and Utilities Used by the Statnet Project
Software
Description: Non-statistical utilities used by the software developed by the Statnet Project. They may also be of use to others.
Author: Pavel N. Krivitsky [aut, cre],
Skye Bender-deMoll [ctb]
Maintainer: Pavel N. Krivitsky <pavel@uow.edu.au>
Diff between statnet.common versions 3.2.3 dated 2015-08-05 and 3.3.0 dated 2015-10-24
DESCRIPTION | 14 ++++++++------ MD5 | 11 +++++++---- NAMESPACE | 2 +- NEWS | 9 +++++++-- R/formula.utilities.R |only R/misc.utilities.R | 21 +++++++++++++++++++++ man/formula.utilities.Rd |only man/vector.namesmatch.Rd |only 8 files changed, 44 insertions(+), 13 deletions(-)
More information about statnet.common at CRAN
Permanent link
Title: Random Effects and/or Sample Selection Models for Panel Count
Data
Description: A high performance package implementing random effects and/or sample selection models for panel count data.
Author: Jing Peng
Maintainer: Jing Peng <pengjing@live.com>
Diff between PanelCount versions 1.0.1 dated 2015-08-31 and 1.0.9 dated 2015-10-24
DESCRIPTION | 14 ++++++------ MD5 | 34 ++++++++++++++--------------- NAMESPACE | 1 R/CRE.R | 44 ++++++++++++++++++++++++++++++------- R/CRE_SS.R | 63 +++++++++++++++++++++++++++++++++++++++++++----------- R/PLN_RE.R | 28 ++++++++++++++++++------ R/PanelCount.R | 4 ++- R/PoissonRE.R | 24 ++++++++++++++++---- R/ProbitRE.R | 26 +++++++++++++++++----- R/data.R | 4 +-- data/rt.RData |binary man/CRE.Rd | 25 ++++++++++++++++++--- man/CRE_SS.Rd | 31 +++++++++++++++++++++----- man/PLN_RE.Rd | 24 +++++++++++++++++--- man/PanelCount.Rd | 5 ++++ man/PoissonRE.Rd | 14 +++++++++--- man/ProbitRE.Rd | 15 ++++++++++-- man/rt.Rd | 4 +-- 18 files changed, 274 insertions(+), 86 deletions(-)
Title: Quality Improvement Charts
Description: Functions for making run charts and basic Shewhart control
charts for measure and count data.
The main function, qic(), creates run and control charts and has a
simple interface with a rich set of options to control data analysis
and plotting, including options for automatic data aggregation by
subgroups, easy analysis of before-and-after data, exclusion of one
or more data points from analysis, and splitting charts into
sequential time periods.
Missing values and empty subgroups are handled gracefully.
Author: Jacob Anhoej [aut, cre],
Timo Roeder [ctb]
Maintainer: Jacob Anhoej <jacob@anhoej.net>
Diff between qicharts versions 0.4.1 dated 2015-10-17 and 0.4.2 dated 2015-10-24
DESCRIPTION | 8 +++---- MD5 | 20 +++++++++--------- NEWS | 5 ++++ R/qic.R | 6 +++-- R/tcc.R | 12 ++++++----- inst/doc/controlcharts.R | 8 +++---- inst/doc/controlcharts.Rmd | 16 +++++++------- inst/doc/controlcharts.html | 48 ++++++++++++++++++++++---------------------- inst/doc/runcharts.html | 18 ++++++++-------- man/plot.tcc.Rd | 4 +-- vignettes/controlcharts.Rmd | 16 +++++++------- 11 files changed, 85 insertions(+), 76 deletions(-)
Title: Mixed GAM Computation Vehicle with GCV/AIC/REML Smoothness
Estimation
Description: GAMs, GAMMs and other generalized ridge regression with
multiple smoothing parameter estimation by GCV, REML or UBRE/AIC.
Includes a gam() function, a wide variety of smoothers, JAGS
support and distributions beyond the exponential family.
Author: Simon Wood <simon.wood@r-project.org>
Maintainer: Simon Wood <simon.wood@r-project.org>
Diff between mgcv versions 1.8-7 dated 2015-07-23 and 1.8-8 dated 2015-10-24
ChangeLog | 55 +++ DESCRIPTION | 6 MD5 | 67 ++-- NAMESPACE | 4 R/bam.r | 268 ++++++++++++++---- R/efam.r | 89 +++--- R/fast-REML.r | 21 - R/gam.fit3.r | 38 +- R/gam.fit4.r | 151 +++++++--- R/gamlss.r | 13 R/mgcv.r | 74 +++-- R/plots.r | 19 - R/smooth.r | 291 ++++++++++++++++++-- R/soap.r | 17 - man/bam.Rd | 13 man/mgcv-package.Rd | 2 man/mgcv-parallel.Rd | 5 man/negbin.Rd | 2 man/plot.gam.Rd | 10 man/predict.bam.Rd | 12 man/predict.gam.Rd | 12 man/single.index.Rd | 2 man/smooth.construct.Rd | 4 man/smooth.construct.gp.smooth.spec.Rd |only man/smooth.construct.sos.smooth.spec.Rd | 3 man/smooth.terms.Rd | 21 - man/smoothCon.Rd | 8 man/t2.Rd | 9 man/uniquecombs.Rd | 22 + man/ziP.Rd | 46 ++- po/R-mgcv.pot | 67 +++- src/gdi.c | 464 ++++++++++++++++++++------------ src/init.c | 4 src/mat.c | 18 - src/mgcv.h | 12 35 files changed, 1343 insertions(+), 506 deletions(-)
Title: General Purpose Hierarchical Data Structure
Description: Create tree structures from hierarchical data, and use the utility
methods to traverse the tree in various orders. Aggregate, cumulate, print, convert to and from data.frame,
and apply functions to your tree data. Useful for decision trees, machine learning, finance, conversion
from and to JSON, and many other applications.
Author: Christoph Glur
Maintainer: Christoph Glur <christoph.glur@ipub.com>
Diff between data.tree versions 0.2.1 dated 2015-09-09 and 0.2.4 dated 2015-10-24
DESCRIPTION | 8 MD5 | 34 - NAMESPACE | 2 NEWS | 12 R/node.R | 10 R/node_actives.R | 3 R/node_methods.R | 23 - R/node_methods_traversal.R | 6 data/acme.rda |binary inst/doc/applications.R | 70 --- inst/doc/applications.Rmd | 84 ---- inst/doc/applications.html | 161 +------- inst/doc/data.tree.html | 35 - inst/extdata/flare.json | 758 +++++++++++++++++++------------------- man/NODE_RESERVED_NAMES_CONST.Rd | 2 man/Node.Rd | 1 tests/testthat/test-treeMethods.R | 31 + vignettes/applications.Rmd | 84 ---- 18 files changed, 528 insertions(+), 796 deletions(-)
Title: Cox Regression (Proportional Hazards Model) with Multiple Causes
and Mixed Effects
Description: A high performance package estimating Cox Model when an even has more than one causes. It also supports random and fixed effects, tied events, and time-varying variables.
Author: Jing Peng
Maintainer: Jing Peng <pengjing@live.com>
Diff between CoxPlus versions 1.1.0 dated 2015-09-06 and 1.1.1 dated 2015-10-24
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/fastCox.R | 2 ++ man/CoxPlus.Rd | 5 +++++ 4 files changed, 15 insertions(+), 8 deletions(-)
Title: Interactive Visualization of Topic Models
Description: Tools to create an interactive web-based visualization of a
topic model that has been fit to a corpus of text data using
Latent Dirichlet Allocation (LDA). Given the estimated parameters of
the topic model, it computes various summary statistics as input to
an interactive visualization built with D3.js that is accessed via
a browser. The goal is to help users interpret the topics in their
LDA topic model.
Author: Carson Sievert [aut, cre],
Kenny Shirley [aut]
Maintainer: Carson Sievert <cpsievert1@gmail.com>
Diff between LDAvis versions 0.2 dated 2015-01-23 and 0.3.2 dated 2015-10-24
LDAvis-0.2/LDAvis/inst/examples |only LDAvis-0.3.2/LDAvis/DESCRIPTION | 10 +- LDAvis-0.3.2/LDAvis/MD5 | 47 +++++----- LDAvis-0.3.2/LDAvis/NAMESPACE | 4 LDAvis-0.3.2/LDAvis/NEWS | 20 ++++ LDAvis-0.3.2/LDAvis/R/createJSON.R | 65 +++++++++----- LDAvis-0.3.2/LDAvis/R/imports.R |only LDAvis-0.3.2/LDAvis/R/runShiny.R | 2 LDAvis-0.3.2/LDAvis/R/serVis.R | 6 - LDAvis-0.3.2/LDAvis/R/shiny.R |only LDAvis-0.3.2/LDAvis/README.md | 25 ++++- LDAvis-0.3.2/LDAvis/build/vignette.rds |binary LDAvis-0.3.2/LDAvis/inst/doc/details.Rnw | 9 +- LDAvis-0.3.2/LDAvis/inst/doc/details.pdf |binary LDAvis-0.3.2/LDAvis/inst/htmljs/index.html | 7 - LDAvis-0.3.2/LDAvis/inst/htmljs/lda.css | 77 +---------------- LDAvis-0.3.2/LDAvis/inst/htmljs/ldavis.js | 46 ++++------ LDAvis-0.3.2/LDAvis/inst/shiny |only LDAvis-0.3.2/LDAvis/man/TwentyNewsgroups.Rd | 3 LDAvis-0.3.2/LDAvis/man/createJSON.Rd | 126 +++++++++++++--------------- LDAvis-0.3.2/LDAvis/man/jsPCA.Rd | 13 +- LDAvis-0.3.2/LDAvis/man/renderVis.Rd |only LDAvis-0.3.2/LDAvis/man/runShiny.Rd | 25 ++--- LDAvis-0.3.2/LDAvis/man/serVis.Rd | 44 ++++----- LDAvis-0.3.2/LDAvis/man/visOutput.Rd |only LDAvis-0.3.2/LDAvis/vignettes/details.Rnw | 9 +- 26 files changed, 259 insertions(+), 279 deletions(-)