Title: Solve Nonlinear Optimization with Nonlinear Constraints
Description: Optimization for nonlinear objective and constraint functions. Linear or nonlinear equality and inequality constraints are allowed. It accepts the input parameters as a constrained matrix.
Author: Xianyan Chen <xychen@uga.edu>, Xiangrong Yin <yinxiangrong@uky.edu>
Maintainer: Xianyan Chen <xychen@uga.edu>
Diff between NlcOptim versions 0.1 dated 2015-10-12 and 0.2 dated 2015-10-26
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/NlcOptim.R | 6 +++++- man/NlcOptim.Rd | 8 +++++++- 4 files changed, 19 insertions(+), 9 deletions(-)
Title: Adaptive Sum of Powered Score Test
Description: R codes for the (adaptive) Sum of Powered Score ('SPU' and 'aSPU') tests, inverse variance weighted Sum of Powered score ('SPUw' and 'aSPUw') tests and gene-based and some pathway based association tests (Pathway based Sum of Powered Score tests ('SPUpath') and adaptive 'SPUpath' ('aSPUpath') test, Gene-based Association Test that uses an extended Simes procedure ('GATES'), Hybrid Set-based Test ('HYST'), extended version of 'GATES' test for pathway-based association testing ('Gates-Simes'). ). The tests can be used with genetic and other data sets with covariates. The response variable is binary or quantitative.
Author: Il-Youp Kwak and others (See Author(s) in each function manual)
Maintainer: Il-Youp Kwak <ikwak@umn.edu>
Diff between aSPU versions 1.37 dated 2015-08-03 and 1.38 dated 2015-10-26
DESCRIPTION | 10 +-- MD5 | 22 ++++--- NAMESPACE | 6 +- R/GEEaSPU.R |only R/aSPUs.R | 21 ++++--- R/aSPUsPath.r | 4 + R/aSPUsim1.R | 6 +- R/aSPUsim2.R | 7 ++ R/util.R | 157 +++++++++++++++++++++++++++++++++++++++++++++++++++++ build/vignette.rds |binary man/GEEaSPU.Rd |only man/aSPUs.Rd | 20 ++++-- man/aSPUsPath.Rd | 4 + 13 files changed, 223 insertions(+), 34 deletions(-)
Title: Interface to Geometry Engine - Open Source (GEOS)
Description: Interface to Geometry Engine - Open Source (GEOS) using the C API for topology operations on geometries. The GEOS library is external to the package, and, when installing the package from source, must be correctly installed first. Windows and Mac Intel OS X binaries are provided on CRAN.
Author: Roger Bivand [cre, aut],
Colin Rundel [aut],
Edzer Pebesma [ctb],
Karl Ove Hufthammer [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between rgeos versions 0.3-13 dated 2015-09-28 and 0.3-14 dated 2015-10-26
ChangeLog | 14 ++++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ inst/ChangeLog | 14 ++++++++++++++ inst/SVN_VERSION | 2 +- man/topo-bin-gIntersection.Rd | 26 ++++++++++++++++++++++++++ src/rgeos_topology_binary.c | 8 ++++---- 7 files changed, 69 insertions(+), 15 deletions(-)
Title: D3 Javascript Scatterplot from R
Description: Creates 'D3' 'JavaScript' scatterplots from 'R' with interactive
features : panning, zooming, tooltips, etc.
Author: Julien Barnier [aut, cre]
Maintainer: Julien Barnier <julien.barnier@ens-lyon.fr>
Diff between scatterD3 versions 0.1.1 dated 2015-06-30 and 0.3 dated 2015-10-26
scatterD3-0.1.1/scatterD3/inst/htmlwidgets/lib/d3-3.5.5.min.js |only scatterD3-0.3/scatterD3/DESCRIPTION | 14 scatterD3-0.3/scatterD3/MD5 | 33 scatterD3-0.3/scatterD3/NAMESPACE | 2 scatterD3-0.3/scatterD3/NEWS | 21 scatterD3-0.3/scatterD3/R/scatterD3.R | 85 scatterD3-0.3/scatterD3/README.md | 54 scatterD3-0.3/scatterD3/build/vignette.rds |binary scatterD3-0.3/scatterD3/inst/doc/introduction.R | 6 scatterD3-0.3/scatterD3/inst/doc/introduction.Rmd | 84 scatterD3-0.3/scatterD3/inst/doc/introduction.html | 118 scatterD3-0.3/scatterD3/inst/htmlwidgets/lib/d3-3.5.6.min.js |only scatterD3-0.3/scatterD3/inst/htmlwidgets/lib/d3-legend.min.js |only scatterD3-0.3/scatterD3/inst/htmlwidgets/lib/scatterD3.css | 5 scatterD3-0.3/scatterD3/inst/htmlwidgets/scatterD3.js | 1268 ++++++---- scatterD3-0.3/scatterD3/inst/htmlwidgets/scatterD3.yaml | 6 scatterD3-0.3/scatterD3/man/scatterD3-shiny.Rd | 4 scatterD3-0.3/scatterD3/man/scatterD3.Rd | 40 scatterD3-0.3/scatterD3/vignettes/introduction.Rmd | 84 19 files changed, 1093 insertions(+), 731 deletions(-)
Title: Data Integration Feature for Force.com and Salesforce.com
Description: Insert, update,
retrieve, delete and bulk operate datasets with a SaaS based CRM
Salesforce.com and a PaaS based application platform Force.com from R.
Author: Takekatsu Hiramura [aut, cre],
Steven Mortimer [ctb],
Alexis Iglauer [ctb]
Maintainer: Takekatsu Hiramura <thira@plavox.info>
Diff between RForcecom versions 0.7 dated 2013-10-23 and 0.8 dated 2015-10-26
RForcecom-0.7/RForcecom/man/RForcecom-package.Rd |only RForcecom-0.8/RForcecom/DESCRIPTION | 48 ++- RForcecom-0.8/RForcecom/MD5 | 64 +++-- RForcecom-0.8/RForcecom/NAMESPACE | 58 +++- RForcecom-0.8/RForcecom/R/RForcecom.R |only RForcecom-0.8/RForcecom/R/rforcecom.abortBulkJob.R |only RForcecom-0.8/RForcecom/R/rforcecom.api.R | 19 + RForcecom-0.8/RForcecom/R/rforcecom.bulkQuery.R |only RForcecom-0.8/RForcecom/R/rforcecom.checkBatchStatus.R |only RForcecom-0.8/RForcecom/R/rforcecom.closeBulkJob.R |only RForcecom-0.8/RForcecom/R/rforcecom.create.R | 7 RForcecom-0.8/RForcecom/R/rforcecom.createBulkBatch.R |only RForcecom-0.8/RForcecom/R/rforcecom.createBulkJob.R |only RForcecom-0.8/RForcecom/R/rforcecom.debug.R | 1 RForcecom-0.8/RForcecom/R/rforcecom.delete.R | 7 RForcecom-0.8/RForcecom/R/rforcecom.getBatchDetails.R |only RForcecom-0.8/RForcecom/R/rforcecom.getBulkQueryResult.R |only RForcecom-0.8/RForcecom/R/rforcecom.getObjectDescription.R | 7 RForcecom-0.8/RForcecom/R/rforcecom.getObjectList.R | 7 RForcecom-0.8/RForcecom/R/rforcecom.getServerTimestamp.R | 7 RForcecom-0.8/RForcecom/R/rforcecom.insertBulkAttachments.R |only RForcecom-0.8/RForcecom/R/rforcecom.login.R | 127 ++++++---- RForcecom-0.8/RForcecom/R/rforcecom.logout.R |only RForcecom-0.8/RForcecom/R/rforcecom.query.R | 20 - RForcecom-0.8/RForcecom/R/rforcecom.queryMore.R | 14 - RForcecom-0.8/RForcecom/R/rforcecom.retrieve.R | 7 RForcecom-0.8/RForcecom/R/rforcecom.search.R | 7 RForcecom-0.8/RForcecom/R/rforcecom.submitBulkQuery.R |only RForcecom-0.8/RForcecom/R/rforcecom.update.R | 7 RForcecom-0.8/RForcecom/R/rforcecom.upsert.R | 7 RForcecom-0.8/RForcecom/R/rforcecom.write.csv.R |only RForcecom-0.8/RForcecom/man/RForcecom.Rd |only RForcecom-0.8/RForcecom/man/rforcecom.abortBulkJob.Rd |only RForcecom-0.8/RForcecom/man/rforcecom.api.Rd | 2 RForcecom-0.8/RForcecom/man/rforcecom.bulkQuery.Rd |only RForcecom-0.8/RForcecom/man/rforcecom.checkBatchStatus.Rd |only RForcecom-0.8/RForcecom/man/rforcecom.closeBulkJob.Rd |only RForcecom-0.8/RForcecom/man/rforcecom.createBulkBatch.Rd |only RForcecom-0.8/RForcecom/man/rforcecom.createBulkJob.Rd |only RForcecom-0.8/RForcecom/man/rforcecom.getBatchDetails.Rd |only RForcecom-0.8/RForcecom/man/rforcecom.getBulkQueryResult.Rd |only RForcecom-0.8/RForcecom/man/rforcecom.insertBulkAttachments.Rd |only RForcecom-0.8/RForcecom/man/rforcecom.login.Rd | 70 +---- RForcecom-0.8/RForcecom/man/rforcecom.logout.Rd |only RForcecom-0.8/RForcecom/man/rforcecom.query.Rd | 8 RForcecom-0.8/RForcecom/man/rforcecom.submitBulkQuery.Rd |only 46 files changed, 290 insertions(+), 204 deletions(-)
Title: Talk to the NCBI EUtils
Description: An interface to NCBI databases such as PubMed, GenBank, or GEO
powered by the Entrez Programming Utilities (EUtils). The nine EUtils
provide programmatic access to the NCBI Entrez query and database
system for searching and retrieving biological data.
Author: Gerhard Schöfl <gerhard.schofl@gmail.com>
Maintainer: Gerhard Schöfl <gerhard.schofl@gmail.com>
Diff between reutils versions 0.2.1 dated 2015-08-29 and 0.2.2 dated 2015-10-26
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS | 7 ++++++- R/elink.R | 33 ++++++++++++++++++++------------- R/reutils-package.R | 1 + R/utils.R | 1 + man/elink.Rd | 2 +- 7 files changed, 39 insertions(+), 25 deletions(-)
Title: Linear Group Fixed Effects
Description: Transforms away factors with many levels prior to doing an OLS.
Useful for estimating linear models with multiple group fixed effects, and for
estimating linear models which uses factors with many levels as pure control variables.
Includes support for instrumental variables, conditional F statistics for weak instruments,
robust and multi-way clustered standard errors, as well as limited mobility bias correction.
Author: Simen Gaure, Ragnar Frisch Centre for Economic Research
Maintainer: Simen Gaure <Simen.Gaure@frisch.uio.no>
Diff between lfe versions 2.4-1786 dated 2015-10-21 and 2.4-1788 dated 2015-10-26
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/bccorr.R | 26 ++++++++++++++++++-------- R/cgsolve.R | 4 ++-- exec/lfescript | 10 ++++++++-- inst/doc/identification.pdf |binary inst/doc/lfehow.pdf |binary inst/doc/speed.pdf |binary src/lfe.c | 4 ++-- src/lfe.h | 4 ++-- 10 files changed, 45 insertions(+), 29 deletions(-)
Title: Multivariate Dependence with Copulas
Description: Classes (S4) of commonly used elliptical, Archimedean, extreme
value and some more copula families. Methods for density, distribution,
random number generation, bivariate dependence measures, perspective and
contour plots. Fitting copula models including variance estimates.
Independence and serial (univariate and multivariate) independence tests,
and other copula related tests. Empirical copula and multivariate CDF.
Goodness-of-fit tests for copulas based on multipliers, the parametric
bootstrap with several transformation options.
Merged former package 'nacopula' for nested Archimedean copulas: Efficient
sampling algorithms, various estimators, goodness-of-fit tests and related
tools and special functions.
Author: Marius Hofert <marius.hofert@uwaterloo.ca>,
Ivan Kojadinovic <ivan.kojadinovic@univ-pau.fr>,
Martin Maechler <maechler@stat.math.ethz.ch>, and
Jun Yan <jun.yan@uconn.edu>
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between copula versions 0.999-13 dated 2015-03-05 and 0.999-14 dated 2015-10-26
copula-0.999-13/copula/R/device.R |only copula-0.999-13/copula/demo/AC-Liouville-demo.R |only copula-0.999-13/copula/demo/GIG-demo.R |only copula-0.999-13/copula/demo/QARClayton.R |only copula-0.999-13/copula/demo/copula_garch.R |only copula-0.999-13/copula/demo/dnac-demo.R |only copula-0.999-13/copula/demo/gof_radial.R |only copula-0.999-13/copula/demo/logL-vis.R |only copula-0.999-13/copula/demo/qrng.R |only copula-0.999-13/copula/demo/tail_compatibility.R |only copula-0.999-13/copula/man/device.Rd |only copula-0.999-14/copula/DESCRIPTION | 32 ++-- copula-0.999-14/copula/MD5 | 120 +++++++++------- copula-0.999-14/copula/NAMESPACE | 111 ++++++++------ copula-0.999-14/copula/R/aux-acopula.R | 5 copula-0.999-14/copula/R/cop_objects.R | 1 copula-0.999-14/copula/R/empcop.R | 2 copula-0.999-14/copula/R/estimation.R | 8 - copula-0.999-14/copula/R/gofTests.R | 2 copula-0.999-14/copula/R/gofTrafos.R | 7 copula-0.999-14/copula/R/graphics.R | 10 - copula-0.999-14/copula/R/nacopula.R | 2 copula-0.999-14/copula/R/normalCopula.R | 5 copula-0.999-14/copula/R/tCopula.R | 3 copula-0.999-14/copula/TODO | 25 +++ copula-0.999-14/copula/build/partial.rdb |only copula-0.999-14/copula/build/vignette.rds |binary copula-0.999-14/copula/demo/00Index | 10 - copula-0.999-14/copula/demo/estimation_via_HAC.R |only copula-0.999-14/copula/demo/gofCopula.R | 17 +- copula-0.999-14/copula/demo/gof_graph.R | 6 copula-0.999-14/copula/demo/retstable.R | 14 + copula-0.999-14/copula/inst/NEWS.Rd | 31 +++- copula-0.999-14/copula/inst/Rsource/GIG.R | 116 ++++++++------- copula-0.999-14/copula/inst/Rsource/dnac.R | 9 - copula-0.999-14/copula/inst/Rsource/utils.R | 2 copula-0.999-14/copula/inst/doc/AC_Liouville.Rmd |only copula-0.999-14/copula/inst/doc/AC_Liouville.html |only copula-0.999-14/copula/inst/doc/AR_Clayton.Rmd |only copula-0.999-14/copula/inst/doc/AR_Clayton.html |only copula-0.999-14/copula/inst/doc/Frank-Rmpfr.pdf |binary copula-0.999-14/copula/inst/doc/GIG.Rmd |only copula-0.999-14/copula/inst/doc/GIG.html |only copula-0.999-14/copula/inst/doc/NALC.Rmd |only copula-0.999-14/copula/inst/doc/NALC.html |only copula-0.999-14/copula/inst/doc/copula_GARCH.Rmd |only copula-0.999-14/copula/inst/doc/copula_GARCH.html |only copula-0.999-14/copula/inst/doc/dNAC.Rmd |only copula-0.999-14/copula/inst/doc/dNAC.html |only copula-0.999-14/copula/inst/doc/logL_visualization.Rmd |only copula-0.999-14/copula/inst/doc/logL_visualization.html |only copula-0.999-14/copula/inst/doc/nacopula-pkg.pdf |binary copula-0.999-14/copula/inst/doc/qrng.Rmd |only copula-0.999-14/copula/inst/doc/qrng.html |only copula-0.999-14/copula/inst/doc/rhoAMH-dilog.Rnw | 3 copula-0.999-14/copula/inst/doc/rhoAMH-dilog.pdf |binary copula-0.999-14/copula/inst/doc/tail_compatibility.Rmd |only copula-0.999-14/copula/inst/doc/tail_compatibility.html |only copula-0.999-14/copula/inst/doc/wild_animals.Rmd |only copula-0.999-14/copula/inst/doc/wild_animals.html |only copula-0.999-14/copula/man/An.Rd | 4 copula-0.999-14/copula/man/Mvdc.Rd | 2 copula-0.999-14/copula/man/coeffG.Rd |only copula-0.999-14/copula/man/contour-methods.Rd | 10 - copula-0.999-14/copula/man/copula-package.Rd | 14 - copula-0.999-14/copula/man/ellipCopula.Rd | 39 +++++ copula-0.999-14/copula/man/fitMvdc.Rd | 7 copula-0.999-14/copula/man/gofCopula.Rd | 19 +- copula-0.999-14/copula/man/pobs.Rd | 5 copula-0.999-14/copula/man/qqplot2.Rd | 10 - copula-0.999-14/copula/tests/estim-ex.R | 21 ++ copula-0.999-14/copula/tests/fitting-ex.R | 1 copula-0.999-14/copula/vignettes/AC_Liouville.Rmd |only copula-0.999-14/copula/vignettes/AR_Clayton.Rmd |only copula-0.999-14/copula/vignettes/GIG.Rmd |only copula-0.999-14/copula/vignettes/NALC.Rmd |only copula-0.999-14/copula/vignettes/copula_GARCH.Rmd |only copula-0.999-14/copula/vignettes/dNAC.Rmd |only copula-0.999-14/copula/vignettes/logL_visualization.Rmd |only copula-0.999-14/copula/vignettes/qrng.Rmd |only copula-0.999-14/copula/vignettes/rhoAMH-dilog.Rnw | 3 copula-0.999-14/copula/vignettes/tail_compatibility.Rmd |only copula-0.999-14/copula/vignettes/wild_animals.Rmd |only 83 files changed, 411 insertions(+), 265 deletions(-)
Title: Variance Dispersion Graphs and Fraction of Design Space Plots
Description: Facilities for constructing variance dispersion graphs, fraction-of-design-space plots
and similar graphics for exploring the properties of experimental designs. The design region is
explored via random sampling, which allows for more flexibility than traditional variance
dispersion graphs. A formula interface is leveraged to provide access to complex model
formulae. Graphics can be constructed simultaneously for multiple experimental designs and/or
multiple model formulae. Instead of using pointwise optimization to find the minimum and
maximum scaled prediction variance curves, which can be inaccurate and time consuming, this
package uses quantile regression as an alternative.
Author: Pieter Schoonees [aut, cre, cph], Niel le Roux [ctb]
Maintainer: Pieter Schoonees <schoonees@gmail.com>
Diff between vdg versions 1.1.1 dated 2015-08-21 and 1.1.2 dated 2015-10-26
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/plot.spv.R | 2 +- man/plot.spv.Rd | 2 +- 4 files changed, 9 insertions(+), 9 deletions(-)
Title: Gene Network Inference from Time-Series Transcriptomic Data
Description: The Time-Delay Correlation algorithm (TDCor) reconstructs the topology of a gene regulatory network (GRN) from time-series transcriptomic data. The algorithm is described in details in Lavenus et al., Plant Cell, 2015. It was initially developed to infer the topology of the GRN controlling lateral root formation in Arabidopsis thaliana. The time-series transcriptomic dataset which was used in this study is included in the package to illustrate how to use it.
Author: Julien Lavenus
Maintainer: Mikael Lucas <mikael.lucas@ird.fr>
Diff between TDCor versions 0.1-1 dated 2015-04-18 and 0.1-2 dated 2015-10-26
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- NAMESPACE | 4 ++++ R/TDCOR.R | 4 ++-- data/LR_dataset.rda |binary data/TF.rda |binary data/l_genes.rda |binary data/l_names.rda |binary data/l_prior.rda |binary data/times.rda |binary man/TDCOR.Rd | 11 +++++++---- man/TDCor-package.Rd | 4 ++-- 12 files changed, 30 insertions(+), 23 deletions(-)
Title: Approximate String Matching and String Distance Functions
Description: Implements an approximate string matching version of R's native
'match' function. Can calculate various string distances based on edits
(damerau-levenshtein, hamming, levenshtein, optimal sting alignment), qgrams
(q-gram, cosine, jaccard distance) or heuristic metrics (jaro, jaro-winkler).
An implementation of soundex is provided as well. Distances can be computed
between character vectors while taking proper care of encoding or between
integer vectors representing generic sequences.
Author: Mark van der Loo [aut, cre],
Jan van der Laan [ctb],
R Core Team [ctb],
Nick Logan [ctb]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between stringdist versions 0.9.3 dated 2015-08-21 and 0.9.4 dated 2015-10-26
DESCRIPTION | 6 +- MD5 | 12 ++-- NEWS | 4 + src/Rstringdist.c | 9 ++- src/jaro.c | 116 ++++++++++++++++++---------------------- src/stringdist.c | 4 + tests/testthat/testStringdist.R | 7 ++ 7 files changed, 86 insertions(+), 72 deletions(-)
Title: Compares the Distribution of Sister Clades Through a Phylogeny
Description: An implementation of the nodiv algorithm, (see Borregaard, M.K., Rahbek, C., Fjeldsaa, J., Parra, J.L., Whittaker, R.J. & Graham, C.H. 2014. Node-based analysis of species distributions. Methods in Ecology and Evolution 5(11): 1225-1235. DOI: 10.1111/2041-210X.12283. Package for phylogenetic analysis of species distributions. The main function goes through each node in the phylogeny, compares the distributions of the two descendant nodes, and compares the result to a null model. This highlights nodes where major distributional divergence have occurred. The distributional divergence for these nodes is mapped using the SOS statistic.
Author: Michael Krabbe Borregaard
Maintainer: Michael Krabbe Borregaard <mkborregaard@snm.ku.dk>
Diff between nodiv versions 1.1.1 dated 2015-10-08 and 1.1.2 dated 2015-10-26
DESCRIPTION | 8 +-- MD5 | 10 +-- R/Add_to_data_object.R | 125 ++++++++++++++++++++++++++----------------------- R/Prepare_data.R | 2 man/add_sitestat.Rd | 6 +- man/nodiv-package.Rd | 4 - 6 files changed, 83 insertions(+), 72 deletions(-)
Title: Genome-Wide Association Analysis of a Biomarker Accounting for
Limit of Detection
Description: Genome-wide association (GWAS) analyses
of a biomarker that account for the limit of detection.
Author: Ahmad Vaez, Ilja M. Nolte, Peter J. van der Most
Maintainer: Ilja M. Nolte <i.m.nolte@umcg.nl>
Diff between lodGWAS versions 1.0-3 dated 2015-02-20 and 1.0-6 dated 2015-10-26
lodGWAS-1.0-3/lodGWAS/R/packaging_v10-0.r |only lodGWAS-1.0-3/lodGWAS/inst/doc/Sample_geno.dose |only lodGWAS-1.0-3/lodGWAS/inst/doc/Sample_geno.map |only lodGWAS-1.0-3/lodGWAS/inst/doc/Sample_pheno.txt |only lodGWAS-1.0-6/lodGWAS/DESCRIPTION | 10 +++---- lodGWAS-1.0-6/lodGWAS/MD5 | 17 ++++++------ lodGWAS-1.0-6/lodGWAS/NAMESPACE | 2 + lodGWAS-1.0-6/lodGWAS/R/packaging_v10-6.r |only lodGWAS-1.0-6/lodGWAS/inst/doc/lodGWAS_changelog_v1_0_6.txt |only lodGWAS-1.0-6/lodGWAS/inst/extdata |only lodGWAS-1.0-6/lodGWAS/man/lodGWAS-package.Rd | 4 +- lodGWAS-1.0-6/lodGWAS/man/lod_GWAS.Rd | 15 +++++++--- 12 files changed, 29 insertions(+), 19 deletions(-)
Title: Download and Process GIMMS NDVI3g Data
Description:
We provide a set of functions to retrieve information about GIMMS NDVI3g
files currently available online; download and re-arrange the bi-monthly
datasets according to creation time; import downloaded files from native
binary (ENVI) format directly into R based on the widely applied 'raster'
package; and calculate monthly value composites (e.g. maximum value
composites, MVC) from the bi-monthly input data.
Author: Florian Detsch
Maintainer: Florian Detsch <admin@environmentalinformatics-marburg.de>
Diff between gimms versions 0.1.1 dated 2015-10-09 and 0.2.0 dated 2015-10-26
gimms-0.1.1/gimms/R/createHdr.R |only gimms-0.1.1/gimms/man/createHdr.Rd |only gimms-0.2.0/gimms/DESCRIPTION | 8 gimms-0.2.0/gimms/MD5 | 32 +-- gimms-0.2.0/gimms/NAMESPACE | 2 gimms-0.2.0/gimms/R/createHeader.R |only gimms-0.2.0/gimms/R/downloadGimms.R | 30 ++- gimms-0.2.0/gimms/R/monthlyComposite.R | 14 + gimms-0.2.0/gimms/R/monthlyIndices.R | 121 +++++++++---- gimms-0.2.0/gimms/R/rasterizeGimms.R | 43 ++-- gimms-0.2.0/gimms/R/rearrangeFiles.R | 161 ++++++++++-------- gimms-0.2.0/gimms/R/updateInventory.R | 106 ++++++------ gimms-0.2.0/gimms/README.md | 261 +++++++++++++++++++++++++----- gimms-0.2.0/gimms/man/createHeader.Rd |only gimms-0.2.0/gimms/man/downloadGimms.Rd | 17 + gimms-0.2.0/gimms/man/monthlyComposite.Rd | 14 + gimms-0.2.0/gimms/man/monthlyIndices.Rd | 11 + gimms-0.2.0/gimms/man/rasterizeGimms.Rd | 30 +-- gimms-0.2.0/gimms/man/rearrangeFiles.Rd | 8 19 files changed, 568 insertions(+), 290 deletions(-)
Title: Local Inferential Feature Significance for Multivariate Kernel
Density Estimation
Description: Local inferential feature significance for multivariate kernel density estimation.
Author: Tarn Duong <tarn.duong@gmail.com> & Matt Wand <Matt.Wand@uts.edu.au>
Maintainer: Tarn Duong <tarn.duong@gmail.com>
Diff between feature versions 1.2.12 dated 2015-09-08 and 1.2.13 dated 2015-10-26
DESCRIPTION | 10 +++++----- MD5 | 16 +++++++++------- R/dfltCounts.R |only R/drvkde.R |only R/featureSignif.R | 13 +++++-------- R/plot.fs.R | 36 ++++++++++++++++-------------------- inst/doc/feature.pdf |binary man/feature-package.Rd | 2 +- man/featureSignifGUI.Rd | 4 ++-- man/plot.fs.Rd | 3 ++- 10 files changed, 40 insertions(+), 44 deletions(-)
Title: Conditional Inference Procedures in a Permutation Test Framework
Description: Conditional inference procedures for the general independence
problem including two-sample, K-sample (non-parametric ANOVA), correlation,
censored, ordered and multivariate problems.
Author: Torsten Hothorn [aut, cre],
Kurt Hornik [aut],
Mark A. van de Wiel [aut],
Henric Winell [aut],
Achim Zeileis [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between coin versions 1.1-0 dated 2015-08-16 and 1.1-1 dated 2015-10-26
DESCRIPTION | 9 - MD5 | 56 +++--- NAMESPACE | 3 R/ContingencyTests.R | 5 R/ContrastTest.R | 7 R/CorrelationTests.R | 20 +- R/MTP.R | 3 R/MaximallySelectedStatisticsTests.R | 5 R/helpers.R | 53 ++---- build/vignette.rds |binary inst/NEWS.Rd | 18 +- inst/doc/LegoCondInf.pdf |binary inst/doc/MAXtest.pdf |binary inst/doc/coin.R | 133 +++++++-------- inst/doc/coin.Rnw | 291 +++++++++++++++++---------------- inst/doc/coin.pdf |binary inst/doc/coin_implementation.pdf |binary man/IndependenceTest.Rd | 6 man/PermutationDistribution-methods.Rd | 11 + man/SymmetryTest.Rd | 4 man/ocarcinoma.Rd | 4 man/pvalue-methods.Rd | 4 tests/Examples/coin-Ex.Rout.save | 10 - tests/regtest_contingency.R | 25 +- tests/regtest_contingency.Rout.save | 29 +-- tests/regtest_distribution.R | 4 tests/regtest_distribution.Rout.save | 8 vignettes/coin.Rnw | 291 +++++++++++++++++---------------- vignettes/coin.Rout.save | 115 +++++-------- 29 files changed, 553 insertions(+), 561 deletions(-)