Thu, 29 Oct 2015

Package WGCNA updated to version 1.48 with previous version 1.47 dated 2015-06-15

Title: Weighted Correlation Network Analysis
Description: Functions necessary to perform Weighted Correlation Network Analysis on high-dimensional data. Includes functions for rudimentary data cleaning, construction of correlation networks, module identification, summarization, and relating of variables and modules to sample traits. Also includes a number of utility functions for data manipulation and visualization.
Author: Peter Langfelder <Peter.Langfelder@gmail.com> and Steve Horvath <SHorvath@mednet.ucla.edu> with contributions by Chaochao Cai, Jun Dong, Jeremy Miller, Lin Song, Andy Yip, and Bin Zhang
Maintainer: Peter Langfelder <Peter.Langfelder@gmail.com>

Diff between WGCNA versions 1.47 dated 2015-06-15 and 1.48 dated 2015-10-29

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 24 files changed, 429 insertions(+), 175 deletions(-)

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Package spatialEco updated to version 0.1-3 with previous version 0.1-2 dated 2015-10-01

Title: Spatial Analysis and Modelling
Description: Utilities to support spatial data manipulation, query, sampling and modelling. Functions include models for species population density, download utilities for climate and global deforestation spatial products, spatial smoothing, multivariate separability, point process model for creating pseudo- absences and sub-sampling, polygon and point-distance landscape metrics, auto-logistic model, sampling models, cluster optimization and statistical exploratory tools.
Author: Jeffrey S. Evans [aut, cre], Karthik Ram [ctb]
Maintainer: Jeffrey S. Evans <jeffrey_evans@tnc.org>

Diff between spatialEco versions 0.1-2 dated 2015-10-01 and 0.1-3 dated 2015-10-29

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Package Sim.DiffProc updated to version 3.0 with previous version 2.9 dated 2014-09-10

Title: Simulation of Diffusion Processes
Description: Provides the functions for simulation and modeling of stochastic differential equations (SDE's) the type Ito and Stratonovich. This package contains many objects, the numerical methods to find the solutions to SDE's (1, 2 and 3-dim), with a possibility for simulates a flows trajectories,with good accuracy. Many theoretical problems on the SDE's have become the object of practical research, as statistical analysis and simulation of solution of SDE's, enabled many searchers in different domains to use these equations to modeling and to analyse practical problems, in financial and actuarial modeling and other areas of application, for example modelling and simulate of dispersion in shallow water using the attractive center (Boukhetala K, 1996). We hope that the package presented here and the updated survey on the subject might be of help for practitioners, postgraduate and PhD students, and researchers in the field who might want to implement new methods.
Author: Arsalane Chouaib Guidoum, Kamal Boukhetala
Maintainer: Arsalane Chouaib Guidoum <acguidoum@usthb.dz>

Diff between Sim.DiffProc versions 2.9 dated 2014-09-10 and 3.0 dated 2015-10-29

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Package showtext updated to version 0.4-4 with previous version 0.4-3 dated 2015-09-20

Title: Using Fonts More Easily in R Graphs
Description: Making it easy to use various types of fonts ('TrueType', 'OpenType', Type 1, web fonts, etc.) in R graphs, and supporting most output formats of R graphics including PNG, PDF and SVG. Text glyphs will be converted into polygons or raster images, hence after the plot has been created, it no longer relies on the font files. No external software such as Ghostscript is needed to use this package.
Author: Yixuan Qiu and authors/contributors of the included software. See file AUTHORS for details.
Maintainer: Yixuan Qiu <yixuan.qiu@cos.name>

Diff between showtext versions 0.4-3 dated 2015-09-20 and 0.4-4 dated 2015-10-29

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 8 files changed, 56 insertions(+), 46 deletions(-)

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Package corHMM updated to version 1.17 with previous version 1.16 dated 2015-04-08

Title: Analysis of Binary Character Evolution
Description: Fits a hidden rates model that allows different transition rate classes on different portions of a phylogeny by treating rate classes as hidden states in a Markov process and various other functions for evaluating models of binary character evolution.
Author: Jeremy M. Beaulieu <jbeaulieu@nimbios.org>, Jeffrey C. Oliver <jeffreycoliver@gmail.com>, Brian O'Meara <bomeara@utk.edu>
Maintainer: Jeremy Beaulieu <jbeaulieu@nimbios.org>

Diff between corHMM versions 1.16 dated 2015-04-08 and 1.17 dated 2015-10-29

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Package BIGDAWG updated to version 1.1.1 with previous version 1.1 dated 2015-06-13

Title: Case-Control Analysis of Multi-Allelic Loci
Description: Data sets and functions for chi-squared Hardy-Weinberg and case-control association tests of highly polymorphic genetic data [e.g., human leukocyte antigen (HLA) data]. Performs association tests at multiple levels of polymorphism (haplotype, locus and HLA amino-acids). Combines rare variants to a common class to account for sparse cells in tables as described by Hollenbach JA, Mack SJ, Thomson G, Gourraud PA. 'Analytical methods for disease association studies with immunogenetic data.' Methods Mol Biol. 2012;882:245-66.
Author: Derek Pappas <dpappas@chori.org>, Steve Mack <sjmack@chori.org>, Jill Hollenbach <Jill.Hollenbach@ucsf.edu>
Maintainer: Steve Mack <sjmack@chori.org>

Diff between BIGDAWG versions 1.1 dated 2015-06-13 and 1.1.1 dated 2015-10-29

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 12 files changed, 510 insertions(+), 504 deletions(-)

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Package polytomous (with last version 0.1.6) was removed from CRAN

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2013-12-20 0.1.6

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Package tcR (with last version 2.1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2015-07-29 2.1.1
2015-07-28 2.1
2015-05-14 2.0
2015-03-21 1.3
2015-01-10 1.1
2014-12-12 1.0

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Package phyloTop (with last version 1.1.1) was removed from CRAN

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2014-05-13 1.1.1
2014-05-10 1.1

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Package indicoio (with last version 0.3) was removed from CRAN

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2014-10-22 0.3

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Package quickpsy (with last version 0.1.0) was removed from CRAN

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2015-04-29 0.1.0

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Package PSAboot (with last version 1.1) was removed from CRAN

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2014-07-02 1.1
2013-11-26 1.0

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Package RMediation (with last version 1.1.3) was removed from CRAN

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2014-03-07 1.1.3
2013-09-12 1.1.2

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Package correlate (with last version 1.0) was removed from CRAN

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2014-01-23 1.0

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Package DPw (with last version 1.1.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-12-12 1.1.3
2014-01-24 1.1.2
2013-04-06 1.1.1
2013-03-05 1.1
2013-02-25 1.0

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Package AOfamilies (with last version 1.01) was removed from CRAN

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2014-01-20 1.01
2012-10-18 1.0

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Package GRANBase (with last version 1.0.12) was removed from CRAN

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2015-07-01 1.0.12
2015-06-19 1.0.8

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Package Claddis (with last version 0.1) was removed from CRAN

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2015-04-28 0.1

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Package extracat (with last version 1.7-3) was removed from CRAN

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2015-09-12 1.7-3

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Package clustergas (with last version 1.0) was removed from CRAN

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2012-06-13 1.0

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Package db.r (with last version 0.1.3) was removed from CRAN

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2014-12-17 0.1.3
2014-12-04 0.1.1
2014-11-20 0.1.0

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New package Canopy with initial version 1.0.0
Package: Canopy
Type: Package
Title: Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing
Version: 1.0.0
Date: 2015-10-28
Author: Yuchao Jiang, Nancy R. Zhang
Maintainer: Yuchao Jiang <yuchaoj@wharton.upenn.edu>
Description: A statistical framework and computational procedure for identifying the sub-populations within a tumor, determining the mutation profiles of each subpopulation, and inferring the tumor's phylogenetic history. The input are variant allele frequencies (VAFs) of somatic single nucleotide alterations (SNAs) along with allele-specific coverage ratios between the tumor and matched normal sample for somatic copy number alterations (CNAs). These quantities can be directly taken from the output of existing software. Canopy provides a general mathematical framework for pooling data across samples and sites to infer the underlying parameters. For SNAs that fall within CNA regions, Canopy infers their temporal ordering and resolves their phase. When there are multiple evolutionary configurations consistent with the data, Canopy outputs all configurations along with their confidence assessment.
License: GPL-2
Depends: R (>= 3.2), ape, fields
Imports: grDevices, graphics, stats
URL: https://sites.google.com/a/cornell.edu/yuchaojiang/home/research/canopy
NeedsCompilation: no
Packaged: 2015-10-29 17:07:21 UTC; yuchaojiang
Repository: CRAN
Date/Publication: 2015-10-29 18:50:43

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New package bmeta with initial version 0.1
Package: bmeta
Type: Package
Title: A Package for Bayesian Meta-Analysis and Meta-Regression
Version: 0.1
Date: 2015-10-29
Author: Tao Ding, Gianluca Baio
Maintainer: Gianluca Baio <gianluca@stats.ucl.ac.uk>
Depends: R2jags,forestplot
Description: Provides a collection of functions for conducting meta-analyses under Bayesian context in R. The package includes functions for computing various effect size or outcome measures (e.g. odds ratios, mean difference and incidence rate ratio) for different types of data based on MCMC simulations. Users are allowed to fit fixed- and random-effects models with different priors to the data. Meta-regression can be carried out if effects of additional covariates are observed. Furthermore, the package provides functions for creating posterior distribution plots and forest plot to display main model output. Traceplots and some other diagnostic plots are also available for assessing model fit and performance.
License: GPL (>= 2)
URL: http://www.statistica.it/gianluca/bmeta, http://www.statistica.it/gianluca
NeedsCompilation: no
Packaged: 2015-10-29 16:51:56 UTC; gianluca
Repository: CRAN
Date/Publication: 2015-10-29 18:50:46

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New package averisk with initial version 1.0
Package: averisk
Type: Package
Title: Calculation of Average Population Attributable Fractions and Confidence Intervals
Version: 1.0
Imports: MASS (>= 7.3.0)
Date: 2015-10-22
Authors@R: person("John", "Ferguson", email = "john.ferguson@nuigalway.ie", role = c("aut", "cre"))
Maintainer: John Ferguson <john.ferguson@nuigalway.ie>
Description: Average population attributable fractions are calculated for a set of risk factors (either binary or ordinal valued) for both prospective and case-control designs. Confidence intervals are found by Monte Carlo simulation. The method can be applied to either prospective or case control designs, provided an estimate of disease prevalence is provided. In addition to an exact calculation of AF, an approximate calculation, based on randomly sampling permutations has been implemented to ensure the calculation is computationally tractable when the number of risk factors is large.
License: CC0
Packaged: 2015-10-29 16:55:47 UTC; 0118158s
Author: John Ferguson [aut, cre]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-10-29 18:50:45

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New package molaR with initial version 0.1
Package: molaR
Title: Dental Surface Complexity Measurement Tools
Version: 0.1
Authors@R: c(person("James D.", "Pampush", role = c("aut", "cre", "cph"), email = "jdpampush@gmail.com"), person("Julia M.", "Winchester", role = c("aut", "cph")), person("Paul E.", "Morse", role = c("aut", "cph")), person("Alexander Q.", "Vining", role = c("aut", "cph")))
Description: Surface topography calculations of Dirichlet's normal energy, relief index, and orientation patch count for teeth using scans of enamel caps. Importantly, for the relief index and orientation patch count calculations to work, the scanned tooth files must be oriented with the occlusal plane parallel to the x and y axes, and perpendicular to the z axis. The files should also be simplified, and smoothed in some other software prior to uploading into R.
Depends: R (>= 2.10), alphahull, psych, geomorph, rgl
License: ACM
LazyData: true
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2015-10-27 14:06:38 UTC; av127
Author: James D. Pampush [aut, cre, cph], Julia M. Winchester [aut, cph], Paul E. Morse [aut, cph], Alexander Q. Vining [aut, cph]
Maintainer: James D. Pampush <jdpampush@gmail.com>
Repository: CRAN
Date/Publication: 2015-10-29 17:48:00

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New package littler with initial version 0.3.0
Package: littler
Type: Package
Title: R at the Command-Line via 'r'
Version: 0.3.0
Date: 2015-10-29
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Description: A scripting and command-line front-end is provided by 'r' (aka 'littler') as a lightweight binary wrapper around the GNU R language and environment for statistical computing and graphics. While R can be used in batch mode, the r binary adds full support for both 'shebang'-style scripting (i.e. using a hash-mark-exclamation-path expression as the first line in scripts) as well as command-line use in standard Unix pipelines. In other words, r provides the R language without the environment.
License: GPL (>= 2)
OS_type: unix
Suggests: knitr
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2015-10-29 12:30:13.34583 UTC; edd
Repository: CRAN
Date/Publication: 2015-10-29 14:13:59

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New package ecospace with initial version 1.0.0
Package: ecospace
Type: Package
Title: Simulating Community Assembly and Ecological Diversification Using Ecospace Frameworks
Version: 1.0.0
Date: 2015-10-21
Depends: R (>= 3.1.0)
Imports: FD (>= 1.0-12)
Authors@R: person("Phil", "Novack-Gottshall", email = "pnovack-gottshall@ben.edu", role = c("aut", "cre"))
Maintainer: Phil Novack-Gottshall <pnovack-gottshall@ben.edu>
Description: Implements stochastic simulations of community assembly (ecological diversification) using customizable ecospace frameworks (functional trait spaces). Provides a wrapper to calculate common ecological disparity and functional ecology statistical dynamics as a function of species richness. Functions are written so they will work in a parallel-computing environment.
License: CC0
URL: https://github.com/pnovack-gottshall/ecospace , http://www.ben.edu/faculty/pnovack-gottshall/index.html
LazyData: TRUE
BugReports: https://github.com/pnovack-gottshall/ecospace/issues
NeedsCompilation: no
Packaged: 2015-10-29 13:55:46 UTC; pnovack-gottshall
Author: Phil Novack-Gottshall [aut, cre]
Repository: CRAN
Date/Publication: 2015-10-29 15:36:21

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Package dae updated to version 2.7-5 with previous version 2.7-2 dated 2015-06-24

Title: Functions Useful in the Design and ANOVA of Experiments
Description: The content falls into the following groupings: (i) Data, (ii) Factor manipulation functions, (iii) Design functions, (iv) ANOVA functions, (v) Matrix functions, (vi) Projector and canonical efficiency functions, and (vii) Miscellaneous functions. A document 'daeDesignRandomization.pdf', available in the doc subdirectory of the installation directory for 'dae', describes the use of the package for generating randomized layouts for experiments. The ANOVA functions facilitate the extraction of information when the 'Error' function has been used in the call to 'aov'.
Author: Chris Brien <Chris.Brien@unisa.edu.au>.
Maintainer: Chris Brien <Chris.Brien@unisa.edu.au>

Diff between dae versions 2.7-2 dated 2015-06-24 and 2.7-5 dated 2015-10-29

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 23 files changed, 239 insertions(+), 109 deletions(-)

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Package bnclassify updated to version 0.3.1 with previous version 0.3.0 dated 2015-07-30

Title: Learning Bayesian Network Classifiers from Data
Description: Implementation of different algorithms for learning discrete Bayesian network classifiers from data, including wrapper algorithms and those based on Chow-Liu's algorithm.
Author: Mihaljevic Bojan [aut, cre], Bielza Concha [aut], Larranaga Pedro [aut]
Maintainer: Mihaljevic Bojan <bmihaljevic@fi.upm.es>

Diff between bnclassify versions 0.3.0 dated 2015-07-30 and 0.3.1 dated 2015-10-29

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Package asremlPlus updated to version 2.0-2 with previous version 2.0-0 dated 2015-06-24

Title: Augments the Use of 'Asreml' in Fitting Mixed Models
Description: Assists in automating the testing of terms in mixed models when 'asreml' is used to fit the models. The content falls into the following natural groupings: (i) Data, (ii) Object manipulation functions, (iii) Model modification functions, (iv) Model testing functions, (v) Model diagnostics functions, (vi) Prediction production and presentation functions, (vii) Response transformation functions, and (viii) Miscellaneous functions. A history of the fitting of a sequence of models is kept in a data frame. Procedures are available for choosing models that conform to the hierarchy or marginality principle and for displaying predictions for significant terms in tables and graphs. The package 'asreml' provides a computationally efficient algorithm for fitting mixed models using Residual Maximum Likelihood. It can be purchased from 'VSNi' (http://www.vsni.co.uk/) as 'asreml-R', who will supply a zip file for local installation/updating.
Author: Chris Brien <Chris.Brien@unisa.edu.au>.
Maintainer: Chris Brien <Chris.Brien@unisa.edu.au>

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New package AFM with initial version 1.0.0
Package: AFM
Type: Package
Version: 1.0.0
Date: 2015-10-29
Title: Atomic Force Microscope Image Analysis
Authors@R: c(person("Mathieu", "Beauvais", role = c("aut", "cre"), email = "beauvais.escp@gmail.com"),person("Irma", "Liascukiene", role = "aut"),person("Jessem", "Landoulsi", role = "aut"))
Author: Mathieu Beauvais [aut, cre], Irma Liascukiene [aut], Jessem Landoulsi [aut]
Maintainer: Mathieu Beauvais <beauvais.escp@gmail.com>
Description: Provides Atomic Force Microscope images analysis such as Power Spectrum Density, roughness against lengthscale, variogram and variance, fractal dimension and scale.
NeedsCompilation: no
Repository: CRAN
License: AGPL-3
Depends: R (>= 3.1.3)
Imports: data.table(>= 1.9.6),stringr(>= 1.0.0),gstat(>= 1.0-26),fractaldim(>= 0.8-4),rgl(>= 0.95.1337),pracma(>= 1.8.6),fftwtools(>= 0.9-7),geoR(>= 1.7-5.1),grid(>= 3.1.3),gridExtra(>= 2.0.0),moments(>= 0.14),ggplot2(>= 1.0.1),sp(>= 1.2-0),png(>= 0.1-7),plyr(>= 1.8.3),methods(>= 3.1.3)
Collate: 'AFM3DPrinter.R' 'AFMFractalDimensionAnalyser.R' 'AFMImage.R' 'AFMVariogramAnalyser.R' 'AFMPSDAnalyser.R' 'AFMImageAnalyser.R' 'AFMReportMaker.R' 'pkgname.R'
Packaged: 2015-10-29 14:02:23 UTC; mbeauvai
Date/Publication: 2015-10-29 15:36:18

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Package vegan3d updated to version 1.0-0 with previous version 0.65-1 dated 2015-05-27

Title: Static and Dynamic 3D Plots for the 'vegan' Package
Description: Static and dynamic 3D plots to be used with ordination results and in diversity analysis, especially with the vegan package.
Author: Jari Oksanen [aut, cre], Roeland Kindt [aut], Gavin L. Simpson [aut]
Maintainer: Jari Oksanen <jari.oksanen@oulu.fi>

Diff between vegan3d versions 0.65-1 dated 2015-05-27 and 1.0-0 dated 2015-10-29

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New package RNaviCell with initial version 0.2
Package: RNaviCell
Title: Visualization of High-Throughput Data on Large-Scale Biological Networks
Version: 0.2
Authors@R: c(person("Eric", "Bonnet", role = c("aut", "cre"), email = "eric.bonnet@curie.fr"), person("Paul", "Deveau",role = "aut", email = "paul.deveau@curie.fr"))
Maintainer: Eric Bonnet <eric.bonnet@curie.fr>
Description: Provides a set of functions to access a data visualization web service. For more information and a tutorial on how to use it, see https://navicell.curie.fr/pages/nav_web_service.html and https://github.com/sysbio-curie/RNaviCell.
Depends: R (>= 2.14.0), RCurl, RJSONIO
Imports: methods
License: LGPL-2.1 | file LICENSE
Packaged: 2015-10-29 07:29:17 UTC; eric
Author: Eric Bonnet [aut, cre], Paul Deveau [aut]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-10-29 13:03:22

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Package LaplaceDeconv updated to version 1.0.2 with previous version 1.0.1 dated 2015-10-29

Title: Laplace Deconvolution with Noisy Discrete Non-Equally Spaced Observations on a Finite Time Interval
Description: Solves the problem of Laplace deconvolution with noisy discrete non-equally spaced observations on a finite time interval based on expansions of the convolution kernel, the unknown function and the observed signal over Laguerre functions basis. It implements the methodology proposed in the paper "Laplace deconvolution on the basis of time domain data and its application to Dynamic Contrast Enhanced imaging" by F. Comte, C-A. Cuenod, M. Pensky and Y. Rozenholc in ArXiv (http://arxiv.org/abs/1405.7107).
Author: Yves Rozenholc (University Paris Descartes), Marianna Pensky (University of Central Florida)
Maintainer: Yves Rozenholc <yves.rozenholc@parisdescartes.fr>

Diff between LaplaceDeconv versions 1.0.1 dated 2015-10-29 and 1.0.2 dated 2015-10-29

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Package CDVine updated to version 1.4 with previous version 1.3 dated 2015-07-30

Title: Statistical Inference of C- And D-Vine Copulas
Description: Functions for statistical inference of canonical vine (C-vine) and D-vine copulas. Tools for bivariate exploratory data analysis and for bivariate as well as vine copula selection are provided. Models can be estimated either sequentially or by joint maximum likelihood estimation. Sampling algorithms and plotting methods are also included. Data is assumed to lie in the unit hypercube (so-called copula data).
Author: Ulf Schepsmeier, Eike Christian Brechmann
Maintainer: Tobias Erhardt <tobias.erhardt@tum.de>

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Package VGAMdata updated to version 1.0-0 with previous version 0.9-7 dated 2015-03-17

Title: Data Supporting the 'VGAM' Package
Description: Data sets to accompany the VGAM package and the book "Vector Generalized Linear and Additive Models: With an Implementation in R" (Yee, 2015). These are used to illustrate vector generalized linear and additive models (VGLMs/VGAMs), and associated models (Reduced-Rank VGLMs, Quadratic RR-VGLMs, Row-Column Interaction Models, and constrained and unconstrained ordination models in ecology).
Author: Thomas Yee [aut, cre, cph], James Gray [dtc]
Maintainer: Thomas Yee <t.yee@auckland.ac.nz>

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Package VGAM updated to version 1.0-0 with previous version 0.9-8 dated 2015-05-11

Title: Vector Generalized Linear and Additive Models
Description: An implementation of about 6 major classes of statistical regression models. At the heart of it are the vector generalized linear and additive model (VGLM/VGAM) classes, and the book "Vector Generalized Linear and Additive Models: With an Implementation in R" (Yee, 2015) gives details of the statistical framework and VGAM package. Currently only fixed-effects models are implemented, i.e., no random-effects models. Many (150+) models and distributions are estimated by maximum likelihood estimation (MLE) or penalized MLE, using Fisher scoring. VGLMs can be loosely thought of as multivariate GLMs. VGAMs are data-driven VGLMs (i.e., with smoothing). The other classes are RR-VGLMs (reduced-rank VGLMs), quadratic RR-VGLMs, reduced-rank VGAMs, RCIMs (row-column interaction models)---these classes perform constrained and unconstrained quadratic ordination (CQO/UQO) models in ecology, as well as constrained additive ordination (CAO). Note that these functions are subject to change; see the NEWS and ChangeLog files for latest changes.
Author: Thomas W. Yee <t.yee@auckland.ac.nz>
Maintainer: Thomas Yee <t.yee@auckland.ac.nz>

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Package spam updated to version 1.3-0 with previous version 1.2-1 dated 2015-09-30

Title: SPArse Matrix
Description: Set of functions for sparse matrix algebra. Differences with SparseM/Matrix are: (1) we only support (essentially) one sparse matrix format, (2) based on transparent and simple structure(s), (3) tailored for MCMC calculations within GMRF. (4) S3 and S4 like-"compatible" ... and it is fast.
Author: Reinhard Furrer [aut, cre], Florian Gerber [ctb]
Maintainer: Reinhard Furrer <reinhard.furrer@math.uzh.ch>

Diff between spam versions 1.2-1 dated 2015-09-30 and 1.3-0 dated 2015-10-29

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New package RGoogleAnalyticsPremium with initial version 0.1
Package: RGoogleAnalyticsPremium
Type: Package
Title: Unsampled Data in R for Google Analytics Premium Accounts
Version: 0.1
Date: 2015-10-21
Author: Jalpa Joshi Dave
Maintainer: Jalpa Joshi Dave <jalpa@tatvic.com>
Description: It fires a query to the API to get the unsampled data in R for Google Analytics Premium Accounts. It retrieves data from the Google drive document and stores it into the local drive. The path to the excel file is returned by this package. The user can read data from the excel file into R using read.csv() function.
License: Apache License 2.0
Depends: R(>= 3.2.2), httr, lubridate, jsonlite, utils
LazyData: TRUE
NeedsCompilation: no
Repository: CRAN
Packaged: 2015-10-29 06:38:45 UTC; J
Date/Publication: 2015-10-29 08:29:11

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Package onlinePCA updated to version 1.3 with previous version 1.2 dated 2015-08-12

Title: Online Principal Component Analysis
Description: Online PCA for multivariate and functional data using perturbation methods, low-rank incremental methods, and stochastic optimization methods.
Author: David Degras [aut, cre], Herve Cardot [ctb]
Maintainer: David Degras <ddegrasv@gmail.com>

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 man/incRpca.Rd           |   47 ++++++++++++++------------------
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 man/incRpca.rc.Rd        |   67 +++++++++++++++++++++--------------------------
 man/onlinePCA-package.Rd |   10 ++-----
 man/perturbationRpca.Rd  |   50 ++++++++++++++---------------------
 man/secularRpca.Rd       |   31 +++++++--------------
 man/sgapca.Rd            |   19 ++++---------
 man/snlpca.Rd            |   36 ++++++++-----------------
 man/updateCovariance.Rd  |   10 +++----
 man/updateMean.Rd        |   13 ++++-----
 29 files changed, 293 insertions(+), 354 deletions(-)

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Package maxLik updated to version 1.3-2 with previous version 1.3-0 dated 2015-10-24

Title: Maximum Likelihood Estimation and Related Tools
Description: Functions for Maximum Likelihood (ML) estimation and non-linear optimization, and related tools. It includes a unified way to call different optimizers, and classes and methods to handle the results from the ML viewpoint. It also includes a number of convenience tools for testing and developing your own models.
Author: Ott Toomet <otoomet@gmail.com>, Arne Henningsen <arne.henningsen@gmail.com>, with contributions from Spencer Graves and Yves Croissant
Maintainer: Ott Toomet <otoomet@gmail.com>

Diff between maxLik versions 1.3-0 dated 2015-10-24 and 1.3-2 dated 2015-10-29

 DESCRIPTION           |    8 ++++----
 MD5                   |   22 +++++++++++-----------
 NEWS                  |    5 +++++
 R/25-addControlList.R |   19 +++++++++++++------
 R/maxBFGS.R           |    2 +-
 R/maxBFGSR.R          |    2 +-
 R/maxCG.R             |    2 +-
 R/maxNM.R             |    2 +-
 R/maxNR.R             |    2 +-
 R/maxOptim.R          |    2 +-
 R/maxSANN.R           |    2 +-
 man/maxNR.Rd          |    2 +-
 12 files changed, 41 insertions(+), 29 deletions(-)

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New package LaplaceDeconv with initial version 1.0.1
Package: LaplaceDeconv
Type: Package
Title: Laplace Deconvolution with Noisy Discrete Non-Equally Spaced Observations on a Finite Time Interval
Version: 1.0.1
Date: 2015-10-29
Author: Yves Rozenholc (University Paris Descartes), Marianna Pensky (University of Central Florida)
Maintainer: Yves Rozenholc <yves.rozenholc@parisdescartes.fr>
Description: Solves the problem of Laplace deconvolution with noisy discrete non-equally spaced observations on a finite time interval based on expansions of the convolution kernel, the unknown function and the observed signal over Laguerre functions basis. It implements the methodology proposed in the paper "Laplace deconvolution on the basis of time domain data and its application to Dynamic Contrast Enhanced imaging" by F. Comte, C-A. Cuenod, M. Pensky and Y. Rozenholc in ArXiv (http://arxiv.org/abs/1405.7107).
License: MIT + file LICENSE
Imports: parallel, polynom, orthopolynom
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2015-10-29 00:18:43 UTC; rozen
Repository: CRAN
Date/Publication: 2015-10-29 08:29:08

More information about LaplaceDeconv at CRAN
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