Title: Management, Display, and Processing of Medical Imaging Data
Description: Provide a compact storage for medical imaging data with access and display possibilities. Basic tools for processing brain imaging data are proposed like extraction of brain voxels, morphological image segmentation, and filtering / normalization of contrast parameters. Specific tools are also provided for blood perfusion imaging to calculate hypoperfusion and reperfusion volumes.
Author: Brice Ozenne
Maintainer: Brice Ozenne <brice.ozenne@orange.fr>
Diff between MRIaggr versions 1.1.3 dated 2015-11-02 and 1.1.4 dated 2015-11-08
DESCRIPTION | 14 MD5 | 26 - NAMESPACE | 2 R/Class_MRIaggr.R | 2 R/Functions_AssociatedClass.R | 2 R/Functions_GR.R | 2 R/RcppExports.R | 118 +++---- inst/List_of_arguments.R | 630 +++++++++++++++++++++-------------------- man/MRIaggr-calcGroupsW_cpp.Rd | 37 +- man/sfMM-calcPottsParameter.Rd | 148 +++++---- man/sfMM-rhoLvfree.Rd | 10 src/Functions_Potts.cpp | 36 +- src/Functions_W.cpp | 12 src/RcppExports.cpp | 13 14 files changed, 554 insertions(+), 498 deletions(-)
Title: Convert GBM Object Trees to SAS Code
Description: Writes SAS code to get predicted values from every tree of a gbm.object.
Author: John R. Dixon
Maintainer: John R. Dixon <gbm2sas@gmail.com>
Diff between gbm2sas versions 1.0 dated 2015-04-18 and 2.0 dated 2015-11-08
gbm2sas-1.0/gbm2sas/R/gbm2sas.r |only gbm2sas-2.0/gbm2sas/DESCRIPTION | 8 ++++---- gbm2sas-2.0/gbm2sas/MD5 | 8 ++++---- gbm2sas-2.0/gbm2sas/NAMESPACE | 1 + gbm2sas-2.0/gbm2sas/R/gbm2sas.R |only gbm2sas-2.0/gbm2sas/man/gbm2sas.Rd | 11 ++++++++--- 6 files changed, 17 insertions(+), 11 deletions(-)
Title: A Method to Search for Differentially Expressed Genes and to
Detect Recurrent Chromosomal Copy Number Aberrations
Description: A fold change rank ordering statistics method is presented to search for
differentially expressed genes and to detect recurrent chromosomal copy number aberrations.
This method may be useful for high-throughput biological data (microarray, sequencing, ...).
Probabilities are associated with genes/probes in the dataset and there is no problem of
multiple tests when using this method. For aCGH data, segmentation results are obtained by
merging the significant probes detected.
Author: Doulaye Dembele
Maintainer: Doulaye Dembele <doulaye@igbmc.fr>
Diff between fcros versions 1.4 dated 2015-07-29 and 1.4.1 dated 2015-11-08
DESCRIPTION | 10 +++++----- MD5 | 46 ++++++++++++++++++++++++++++------------------ NAMESPACE | 10 +++++++--- R/fcrosC.R |only R/fcrosChrMerge.R |only R/fcrosChrSegmentC.R |only R/fcrosChrSummary.R | 30 ++++++++++++++---------------- R/fcrosMod.R | 4 ++-- R/rmat.R |only R/rmatCalc.R |only data/cghInfo.rda |binary man/cghData.Rd | 2 +- man/cghInfo.Rd | 2 +- man/fcros-package.Rd | 16 ++++++++-------- man/fcros.Rd | 2 +- man/fcros2.Rd | 2 +- man/fcrosC.Rd |only man/fcrosChrMerge.Rd |only man/fcrosChrPlot.Rd | 8 ++++---- man/fcrosChrPlot2.Rd | 8 ++++---- man/fcrosChrSegment.Rd | 8 ++++---- man/fcrosChrSegmentC.Rd |only man/fcrosChrSummary.Rd | 12 ++++++------ man/fcrosFCmat.Rd | 2 +- man/fcrosHistoPlot.Rd | 2 +- man/fcrosMod.Rd | 2 +- man/fcrosTopN.Rd | 2 +- man/rmatCalc.Rd |only src |only 29 files changed, 90 insertions(+), 78 deletions(-)
Title: Discrete Time Survival Analysis
Description: Provides data transformations, estimation utilities,
predictive evaluation measures and simulation functions for discrete time
survival analysis.
Author: Thomas Welchowski <welchow@imbie.meb.uni-bonn.de> and Matthias Schmid <matthias.schmid@imbie.uni-bonn.de>
Maintainer: Thomas Welchowski <welchow@imbie.meb.uni-bonn.de>
Diff between discSurv versions 1.1.1 dated 2015-10-21 and 1.1.2 dated 2015-11-08
DESCRIPTION | 15 ++++++++------- MD5 | 14 +++++++------- NAMESPACE | 13 +++++-------- man/discSurv-package.Rd | 4 ++-- man/fprUno.Rd | 2 +- man/fprUnoShort.Rd | 2 +- man/tprUno.Rd | 2 +- man/tprUnoShort.Rd | 2 +- 8 files changed, 26 insertions(+), 28 deletions(-)
Title: Age-Specific Survival Analysis from Incomplete
Capture-Recapture/Recovery Data
Description: Estimates survival and mortality with covariates from capture-recapture/recovery data in a Bayesian framework when many individuals are of unknown age. It includes tools for data checking, model diagnostics and outputs such as life-tables and plots.
Author: Fernando Colchero, Owen Jones, Maren Rebke
Maintainer: Fernando Colchero <colchero@imada.sdu.dk>
Diff between BaSTA versions 1.9.3 dated 2014-03-01 and 1.9.4 dated 2015-11-08
BaSTA-1.9.3/BaSTA/build |only BaSTA-1.9.3/BaSTA/inst/doc/BaSTAoverview.R |only BaSTA-1.9.3/BaSTA/inst/doc/BaSTAoverview.Rnw |only BaSTA-1.9.3/BaSTA/vignettes |only BaSTA-1.9.4/BaSTA/DESCRIPTION | 18 BaSTA-1.9.4/BaSTA/MD5 | 44 BaSTA-1.9.4/BaSTA/NAMESPACE | 18 BaSTA-1.9.4/BaSTA/R/MakeCovMat.R | 40 BaSTA-1.9.4/BaSTA/R/basta.R | 3065 ++++++++++++++------------- BaSTA-1.9.4/BaSTA/R/basta.default.R | 56 BaSTA-1.9.4/BaSTA/R/multibasta.R |only BaSTA-1.9.4/BaSTA/R/plot.basta.R | 333 +- BaSTA-1.9.4/BaSTA/R/summary.basta.R | 4 BaSTA-1.9.4/BaSTA/data/sim1.RData |binary BaSTA-1.9.4/BaSTA/data/sim1Out.RData |binary BaSTA-1.9.4/BaSTA/man/BaSTA-package.Rd | 6 BaSTA-1.9.4/BaSTA/man/CensusToCaptHist.Rd | 10 BaSTA-1.9.4/BaSTA/man/MakeCovMat.Rd | 2 BaSTA-1.9.4/BaSTA/man/basta.Rd | 78 BaSTA-1.9.4/BaSTA/man/multibasta.Rd |only BaSTA-1.9.4/BaSTA/man/sim1.Rd | 2 BaSTA-1.9.4/BaSTA/man/summary.basta.Rd | 43 22 files changed, 1967 insertions(+), 1752 deletions(-)
Title: Perform Common JavaScript Operations in Shiny Apps using Plain R
Code
Description: Perform common JavaScript operations in Shiny applications without
having to know any JavaScript. Examples include: hiding an element, disabling
an input, resetting an input back to its original value, delaying code execution
by a few seconds, and many more useful functions. 'shinyjs' can also be used to
easily run your own custom JavaScript functions from R.
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali <daattali@gmail.com>
Diff between shinyjs versions 0.2.0 dated 2015-09-06 and 0.2.3 dated 2015-11-08
DESCRIPTION | 18 +-- MD5 | 63 ++++++----- NAMESPACE | 2 NEWS.md | 20 +++ R/colourInput.R | 8 - R/extendShinyjs.R | 3 R/useShinyjs.R | 53 +++++++-- R/utils.R | 42 ++++--- README.md | 191 +++++++++++++++++++++++++----------- inst/doc/overview.Rmd | 91 +++++++++++++---- inst/doc/overview.html | 139 +++++++++++++++++--------- inst/srcjs/inject.js |only inst/srcjs/shinyjs-default-funcs.js | 19 +++ man/classFuncs.Rd | 2 man/colourInput.Rd | 2 man/delay.Rd | 2 man/disabled.Rd | 2 man/extendShinyjs.Rd | 2 man/hidden.Rd | 2 man/inlineCSS.Rd | 2 man/js.Rd | 5 man/messageFuncs.Rd | 2 man/onevent.Rd | 2 man/reset.Rd | 2 man/runExample.Rd | 2 man/runjs.Rd | 2 man/shinyjs.Rd | 2 man/stateFuncs.Rd | 2 man/text.Rd | 2 man/updateColourInput.Rd | 2 man/useShinyjs.Rd | 20 ++- man/visibilityFuncs.Rd | 2 vignettes/overview.Rmd | 91 +++++++++++++---- 33 files changed, 556 insertions(+), 243 deletions(-)
More information about kernDeepStackNet at CRAN
Permanent link
Title: Graph-Based Change-Point Detection (g-Segmentation)
Description: Using an approach based on similarity graph to estimate change-point(s) and the corresponding p-values. Can be applied to any type of data (high-dimensional, non-Euclidean, etc.) as long as a reasonable similarity measure is available.
Author: Hao Chen and Nancy R. Zhang
Maintainer: Hao Chen <hxchen@ucdavis.edu>
Diff between gSeg versions 0.1 dated 2014-03-07 and 0.2 dated 2015-11-08
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NAMESPACE | 1 + R/gSeg.r | 10 ++++++++-- 4 files changed, 17 insertions(+), 10 deletions(-)
Title: Kiener Distributions and Fat Tails in Finance
Description: Kiener distributions K1, K2, K3 and K4 to characterize
distributions with left and right, symmetric or asymmetric fat tails in market
finance, neuroscience and other disciplines. Two algorithms to estimate with
a high accuracy distribution parameters, quantiles, value-at-risk and expected
shortfall. Also, power hyperbolas and power hyperbolic functions. Some functions
introduced in v1.2-0 were suppressed.
Author: Patrice Kiener
Maintainer: Patrice Kiener <fattailsr@inmodelia.com>
Diff between FatTailsR versions 1.4-1 dated 2015-10-25 and 1.5-0 dated 2015-11-08
DESCRIPTION | 14 +++--- MD5 | 20 ++++----- NAMESPACE | 6 ++ NEWS | 15 +++++-- R/a_FatTailsR-package.R | 1 R/e_conversion.R | 42 +++++++++++++------- R/j_moments.R | 4 - R/l_estimation.R | 15 +++---- R/n_estimation2.R | 98 ++++++++++++++++++++++++++++++++++++------------ man/checkquantiles.Rd | 11 ++--- man/dimdim.Rd | 23 +++++++---- 11 files changed, 168 insertions(+), 81 deletions(-)
Title: PCA, Transpose and Multicore Functionality for 'big.matrix'
Objects
Description: Adds wrappers to add functionality for big.matrix objects (see the bigmemory project).
This allows fast scalable principle components analysis (PCA), or singular value decomposition (SVD).
There are also functions for transposing, using multicore 'apply' functionality, data importing
and for compact display of big.matrix objects. Most functions also work for standard matrices if
RAM is sufficient.
Author: Nicholas Cooper
Maintainer: Nicholas Cooper <nick.cooper@cimr.cam.ac.uk>
Diff between bigpca versions 1.0 dated 2014-03-04 and 1.0.3 dated 2015-11-08
DESCRIPTION | 24 +- MD5 | 50 ++--- NAMESPACE | 8 R/bigpca.R | 387 ++++++++++++++++++++++++++++++---------- man/PC.correct.Rd | 126 ++++++------- man/big.PCA.Rd | 183 +++++++++--------- man/big.algebra.install.help.Rd | 49 ++--- man/big.select.Rd | 89 +++------ man/big.t.Rd | 90 ++++----- man/bigpca-internal.Rd | 3 man/bigpca-package.Rd | 8 man/bmcapply.Rd | 148 ++++++--------- man/estimate.eig.vpcs.Rd | 110 ++++------- man/generate.test.matrix.Rd | 86 +++----- man/get.big.matrix.Rd | 29 +- man/import.big.data.Rd | 200 ++++++++------------ man/pca.scree.plot.Rd | 95 ++++----- man/prv.big.matrix.Rd | 59 ++---- man/quick.elbow.Rd | 47 +--- man/quick.pheno.assocs.Rd | 82 +++----- man/select.least.assoc.Rd | 69 +++---- man/subcor.select.Rd | 85 +++----- man/subpc.select.Rd | 91 +++------ man/svn.bigalgebra.install.Rd | 43 ++-- man/thin.Rd | 139 ++++++-------- man/uniform.select.Rd | 77 +++---- 26 files changed, 1168 insertions(+), 1209 deletions(-)
Title: Fit ARTFIMA Model
Description: Fit and simulate ARTFIMA. Theoretical autocovariance function and spectral density function for stationary ARTFIMA.
Author: A. I. McLeod, Farzad Sabzikar, Mark M. Meerschaert
Maintainer: A.I. McLeod <aimcleod@uwo.ca>
Diff between artfima versions 1.0 dated 2015-08-27 and 1.1 dated 2015-11-08
DESCRIPTION | 8 +++---- MD5 | 9 ++++---- NEWS |only R/artfima.R | 60 ++++++++++++++++++++++++++++++++++-------------------- build/partial.rdb |binary man/artfima.Rd | 13 ++++++++++- 6 files changed, 59 insertions(+), 31 deletions(-)