Title: The Short-Term and Long-Term Hazard Ratio Model for Survival
Data
Description: Inference procedures accommodate a flexible range of hazard ratio patterns with a two-sample semi-parametric model. This model contains the proportional hazards model and the proportional odds model as sub-models, and accommodates non-proportional hazards situations to the extreme of having crossing hazards and crossing survivor functions. Overall, this package has four major functions: 1) the parameter estimation, namely short-term and long-term hazard ratio parameters; 2) 95 percent and 90 percent point-wise confidence intervals and simultaneous confidence bands for the hazard ratio function; 3) p-value of the adaptive weighted log-rank test; 4) p-values of two lack-of-fit tests for the model. See the included "read_me_first.pdf" for brief instructions. In this version (1.1), there is no need to sort the data before applying this package.
Author: Junlong Sun and Song Yang
Maintainer: Junlong Sun <junlong.sun@gmail.com>
Diff between YPmodel versions 1.2 dated 2015-09-22 and 1.3 dated 2015-11-09
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- NAMESPACE | 6 +++--- R/plot.YPmodel.IntervalBands.R | 6 +++--- R/plot.YPmodel.R | 1 + R/plot.YPmodel.lackfittest.R | 5 ++++- R/plot.YPmodel.martint.R | 5 ++--- R/plot.YPmodel.survf.R | 6 +++--- R/summary.YPmodel.R | 4 ++-- R/summary.YPmodel.estimate.R | 6 +++--- man/YPmodel-internal.Rd | 1 + 11 files changed, 37 insertions(+), 33 deletions(-)
Title: Boost Mutex Functionality in R
Description: Boost mutex functionality in R.
Author: Michael J. Kane <kaneplusplus@gmail.com>
Maintainer: Michael J. Kane <bigmemoryauthors@gmail.com>
Diff between synchronicity versions 1.1.4 dated 2014-03-27 and 1.1.9 dated 2015-11-09
synchronicity-1.1.4/synchronicity/README |only synchronicity-1.1.4/synchronicity/src/Makevars |only synchronicity-1.1.4/synchronicity/src/uuid_create.cpp |only synchronicity-1.1.9/synchronicity/DESCRIPTION | 19 - synchronicity-1.1.9/synchronicity/MD5 | 36 +-- synchronicity-1.1.9/synchronicity/NAMESPACE | 46 ++-- synchronicity-1.1.9/synchronicity/R/RcppExports.R |only synchronicity-1.1.9/synchronicity/R/mutexes.R | 113 ++++++++-- synchronicity-1.1.9/synchronicity/R/uuid.R | 5 synchronicity-1.1.9/synchronicity/R/zzz.R | 2 synchronicity-1.1.9/synchronicity/README.md |only synchronicity-1.1.9/synchronicity/cleanup | 3 synchronicity-1.1.9/synchronicity/inst/synchronicity/util.h | 17 - synchronicity-1.1.9/synchronicity/man/attach.mutex-methods.Rd |only synchronicity-1.1.9/synchronicity/man/boost.mutex.descriptor-class.Rd | 43 +-- synchronicity-1.1.9/synchronicity/man/describe.Rd | 9 synchronicity-1.1.9/synchronicity/man/description-methods.Rd |only synchronicity-1.1.9/synchronicity/man/descriptor-class.Rd |only synchronicity-1.1.9/synchronicity/man/read-methods.Rd |only synchronicity-1.1.9/synchronicity/man/synchronicity-package.Rd | 5 synchronicity-1.1.9/synchronicity/src/RcppExports.cpp |only synchronicity-1.1.9/synchronicity/src/SharedCounter.cpp | 4 synchronicity-1.1.9/synchronicity/src/synchronicity.cpp | 79 +++--- synchronicity-1.1.9/synchronicity/src/util.cpp | 18 - 24 files changed, 236 insertions(+), 163 deletions(-)
Title: Range Ancestral State Estimation for Phylogeography and
Comparative Analyses
Description: The rase package primarily implements the Range Ancestral State Estimation for phylogeography described in Quintero, I., Keil, P., Jetz, W., & Crawford, F. W. (2015). Historical Biogeography Using Species Geographical Ranges. Systematic biology, 64(6), 1059-1073. It also includes Bayesian inference of ancestral states under a Brownian Motion model of character evolution and Maximum Likelihood estimation of rase for n-dimensional data. Visualizing functions in 3D are implemented using the rgl package.
Author: Ignacio Quintero [aut, cre],
Forrest W. Crawford [aut],
Petr Keil [aut]
Maintainer: Ignacio Quintero <ignacio.quintero@yale.edu>
Diff between rase versions 0.2-2 dated 2015-08-13 and 0.2-21 dated 2015-11-09
DESCRIPTION | 10 +++++----- MD5 | 9 +++++---- NAMESPACE | 2 +- R/rase_source.r | 10 ++++++++-- README.md | 12 +++++------- inst |only 6 files changed, 24 insertions(+), 19 deletions(-)
Title: Statistical Inference of Vine Copulas
Description: Tools for bivariate exploratory data analysis, bivariate copula selection and (vine) tree construction are provided. Vine copula models can be estimated either sequentially or by joint maximum likelihood estimation. Sampling algorithms and plotting methods are included. Data is assumed to lie in the unit hypercube (so-called copula data). For C- and D-vines links to the package 'CDVine' are provided.
Author: Ulf Schepsmeier, Jakob Stoeber, Eike Christian Brechmann, Benedikt Graeler, Thomas Nagler, Tobias Erhardt
Maintainer: Thomas Nagler <thomas.nagler@tum.de>
Diff between VineCopula versions 1.6 dated 2015-07-22 and 1.6-1 dated 2015-11-09
VineCopula-1.6-1/VineCopula/DESCRIPTION | 12 +-- VineCopula-1.6-1/VineCopula/MD5 | 12 +-- VineCopula-1.6-1/VineCopula/inst/ChangeLog | 38 ++++++---- VineCopula-1.6-1/VineCopula/man/C2RVine.Rd | 30 ++----- VineCopula-1.6-1/VineCopula/man/D2RVine.Rd | 28 ++----- VineCopula-1.6-1/VineCopula/man/pobs.Rd | 3 VineCopula-1.6-1/VineCopula/tests/Examples/VineCopula-Ex_i386.Rout |only VineCopula-1.6/VineCopula/tests/Examples/VineCopula-Ex.Rout.save |only 8 files changed, 58 insertions(+), 65 deletions(-)
Title: Rmetrics - Financial Time Series Objects
Description: Environment for teaching
"Financial Engineering and Computational Finance".
Managing financial time series objects.
Author: Rmetrics Core Team,
Diethelm Wuertz [aut],
Tobias Setz [cre],
Yohan Chalabi [ctb]
Maintainer: Tobias Setz <tobias.setz@rmetrics.org>
Diff between timeSeries versions 3012.99 dated 2015-01-23 and 3022.101 dated 2015-11-09
ChangeLog | 5 + DESCRIPTION | 8 +- MD5 | 20 ++--- NAMESPACE | 2 R/base-rank.R | 106 ++++++++++++++-------------- build/vignette.rds |binary inst/doc/timeSeriesPlot.R | 146 ++++++++++++++++++++------------------ inst/doc/timeSeriesPlot.Rnw | 3 inst/doc/timeSeriesPlot.pdf |binary man/base-rank.Rd | 161 +++++++++++++++++++++---------------------- vignettes/timeSeriesPlot.Rnw | 3 11 files changed, 236 insertions(+), 218 deletions(-)
More information about SuperExactTest at CRAN
Permanent link
Title: Interactive Graphics for QTL Experiments
Description: Web-based interactive charts (using D3.js) for the analysis of
experimental crosses to identify genetic loci (quantitative trait
loci, QTL) contributing to variation in quantitative traits.
Author: Karl W Broman [aut, cre],
Michael Bostock [ctb, cph] (d3.js library in htmlwidgets/lib, http://d3js.org),
Justin Palmer [ctb, cph] (d3.tip library in htmlwidgets/lib, https://github.com/caged/d3-tip),
Cynthia Brewer [cph] (ColorBrewer library in htmlwidgets/lib, http://colorbrewer2.org),
Mark Harrower [cph] (ColorBrewer library in htmlwidgets/lib, http://colorbrewer2.org),
The Pennsylvania State University [cph] (ColorBrewer library in htmlwidgets/lib,
http://colorbrewer2.org),
jQuery Foundation [cph] (jQuery library in htmlwidgets/lib, http://jquery.com),
jQuery contributors [ctb] (jQuery library in htmlwidgets/lib; see
https://github.com/jquery/jquery/blob/master/AUTHORS.txt),
jQuery UI contributors [ctb] (jQuery UI library in htmlwidgets/lib; see http://jqueryui.com/about)
Maintainer: Karl W Broman <kbroman@biostat.wisc.edu>
Diff between qtlcharts versions 0.5-23 dated 2015-11-08 and 0.5-25 dated 2015-11-09
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ build/vignette.rds |binary inst/NEWS.md | 5 +++++ inst/ReadMe.md | 14 ++++++++++---- tests/Rmdtest.R | 10 +++++++--- tests/htmltest.R | 44 ++++++++++++++++++++++++-------------------- 7 files changed, 56 insertions(+), 37 deletions(-)
Title: Principal Component Analysis for Outlier Detection
Description: Methods to detect genetic markers involved in biological adaptation. 'pcadapt' provides statistical tools for outlier detection based on Principal Component Analysis.
Author: Keurcien Luu, Michael G.B. Blum
Maintainer: Keurcien Luu <keurcien.luu@imag.fr>
Diff between pcadapt versions 2.0 dated 2015-11-04 and 2.0.1 dated 2015-11-09
DESCRIPTION | 8 +- MD5 | 22 ++--- R/pcadapt.R | 43 ++++++----- R/plotting.R | 8 +- R/utilities.R | 6 + inst/doc/pcadapt.R | 3 inst/doc/pcadapt.Rmd | 180 ++++++++++++++++++++++++++++++++++--------------- inst/doc/pcadapt.html | 126 +++++++++++++++++++++------------- man/pcadapt-package.Rd | 6 - man/pcadapt.Rd | 7 + man/read4pcadapt.Rd | 6 + vignettes/pcadapt.Rmd | 180 ++++++++++++++++++++++++++++++++++--------------- 12 files changed, 396 insertions(+), 199 deletions(-)
Title: Multivariate Imputation by Chained Equations
Description: Multiple imputation using Fully Conditional Specification (FCS)
implemented by the MICE algorithm. Each variable has its own imputation
model. Built-in imputation models are provided for continuous data
(predictive mean matching, normal), binary data (logistic regression),
unordered categorical data (polytomous logistic regression) and ordered
categorical data (proportional odds). MICE can also impute continuous
two-level data (normal model, pan, second-level variables). Passive
imputation can be used to maintain consistency between variables. Various
diagnostic plots are available to inspect the quality of the imputations.
Author: Stef van Buuren [aut, cre],
Karin Groothuis-Oudshoorn [aut],
Alexander Robitzsch [ctb],
Gerko Vink [ctb],
Lisa Doove [ctb],
Shahab Jolani [ctb]
Maintainer: Stef van Buuren <stef.vanbuuren@tno.nl>
Diff between mice versions 2.22 dated 2014-06-11 and 2.25 dated 2015-11-09
DESCRIPTION | 18 +- MD5 | 297 ++++++++++++++++++++-------------------- NAMESPACE | 42 +++++ R/as.r | 76 ++++++---- R/auxiliary.r | 2 R/boys.r | 3 R/bwplot.r | 5 R/densityplot.r | 9 - R/imports.R |only R/mice.impute.2l.norm.r | 2 R/mice.impute.2l.pan.r | 7 R/mice.impute.polyreg.r | 18 +- R/mice.impute.rf.r | 7 R/mice.r | 21 +- R/nelsonaalen.r | 1 R/plot.r | 7 R/pool.compare.r | 7 R/pool.r | 260 +++++++++++++++++------------------ R/print.r | 6 R/selfreport.r | 2 R/stripplot.r | 9 - R/summary.r | 6 R/windspeed.r | 4 R/with.r | 1 R/xyplot.r | 5 data/boys.rda |binary data/fdd.pred.rda |binary data/fdd.rda |binary data/fdgs.rda |binary data/leiden85.rda |binary data/mammalsleep.rda |binary data/nhanes.rda |binary data/nhanes2.rda |binary data/pattern1.rda |binary data/pattern2.rda |binary data/pattern3.rda |binary data/pattern4.rda |binary data/popmis.rda |binary data/pops.pred.rda |binary data/pops.rda |binary data/potthoffroy.rda |binary data/selfreport.rda |binary data/tbc.rda |binary data/tbc.target.rda |binary data/walking.rda |binary data/windspeed.rda |binary inst/NEWS | 8 + inst/doc/JSScode.R | 2 inst/doc/fimd1.r | 2 inst/doc/fimd2.r | 3 inst/doc/fimd3.r | 2 inst/doc/fimd4.r | 3 inst/doc/fimd5.r | 2 inst/doc/fimd6.r | 1 inst/doc/fimd7.r | 5 inst/doc/fimd8.r | 3 inst/doc/fimd9.r | 2 man/appendbreak.Rd | 3 man/as.mids.Rd | 38 +++-- man/as.mira.Rd | 3 man/boys.Rd | 6 man/bwplot.mids.Rd | 11 - man/cbind.mids.Rd | 3 man/cc-methods.Rd | 3 man/cci-methods.Rd | 3 man/ccn-methods.Rd | 3 man/complete.Rd | 3 man/densityplot.mids.Rd | 25 +-- man/extractBS.Rd | 3 man/fdd.Rd | 3 man/fdgs.Rd | 3 man/fico.Rd | 3 man/flux.Rd | 3 man/fluxplot.Rd | 3 man/getfit.Rd | 3 man/glm.mids.Rd | 3 man/ibind.Rd | 3 man/ic-methods.Rd | 3 man/ici-methods.Rd | 3 man/icn-methods.Rd | 3 man/ifdo.Rd | 3 man/is.mids.Rd | 3 man/is.mipo.Rd | 3 man/is.mira.Rd | 3 man/leiden85.Rd | 3 man/lm.mids.Rd | 3 man/long2mids.Rd | 3 man/mammalsleep.Rd | 3 man/md.pairs.Rd | 3 man/md.pattern.Rd | 3 man/mdc.Rd | 3 man/mice.Rd | 13 - man/mice.impute.2l.norm.Rd | 3 man/mice.impute.2l.pan.Rd | 3 man/mice.impute.2lonly.mean.Rd | 3 man/mice.impute.2lonly.norm.Rd | 3 man/mice.impute.2lonly.pmm.Rd | 3 man/mice.impute.cart.Rd | 3 man/mice.impute.fastpmm.Rd | 3 man/mice.impute.lda.Rd | 3 man/mice.impute.logreg.Rd | 3 man/mice.impute.logreg.boot.Rd | 3 man/mice.impute.mean.Rd | 3 man/mice.impute.norm.Rd | 3 man/mice.impute.norm.boot.Rd | 3 man/mice.impute.norm.nob.Rd | 3 man/mice.impute.norm.predict.Rd | 3 man/mice.impute.passive.Rd | 3 man/mice.impute.pmm.Rd | 3 man/mice.impute.polr.Rd | 3 man/mice.impute.polyreg.Rd | 3 man/mice.impute.quadratic.Rd | 3 man/mice.impute.rf.Rd | 3 man/mice.impute.ri.Rd | 3 man/mice.impute.sample.Rd | 3 man/mice.mids.Rd | 3 man/mice.theme.Rd | 3 man/mids-class.Rd | 3 man/mids2mplus.Rd | 3 man/mids2spss.Rd | 3 man/mipo-class.Rd | 3 man/mira-class.Rd | 3 man/nelsonaalen.Rd | 3 man/nhanes.Rd | 3 man/nhanes2.Rd | 3 man/norm.draw.Rd | 3 man/pattern.Rd | 3 man/plot.mids.Rd | 3 man/pool.Rd | 3 man/pool.compare.Rd | 5 man/pool.r.squared.Rd | 3 man/pool.scalar.Rd | 3 man/popmis.Rd | 3 man/pops.Rd | 3 man/potthoffroy.Rd | 3 man/print.Rd | 3 man/quickpred.Rd | 3 man/rbind.mids.Rd | 3 man/selfreport.Rd | 5 man/squeeze.Rd | 3 man/stripplot.mids.Rd | 23 +-- man/summary.Rd | 3 man/supports.transparent.Rd | 3 man/tbc.Rd | 3 man/version.Rd | 3 man/walking.Rd | 3 man/windspeed.Rd | 7 man/with.mids.Rd | 3 man/xyplot.mids.Rd | 11 - src/RcppExports.cpp | 18 -- 150 files changed, 716 insertions(+), 540 deletions(-)
Title: Linearized Bregman Algorithms for Generalized Linear Models
Description: Efficient procedures for fitting the regularization path for linear, binomial, multinomial models with lasso, group lasso or block lasso penalty. The package uses Linearized Bregman Algorithm to solve the regularization path through iterations. Bregman Inverse Scale Space Differential Inclusion solver is also provided for linear model with lasso penalty.
Author: Feng Ruan, Jiechao Xiong and Yuan Yao
Maintainer: Jiechao Xiong <xiongjiechao@pku.edu.cn>
Diff between Libra versions 1.3 dated 2015-11-07 and 1.3-2 dated 2015-11-09
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/LBlogistic.c | 22 ++++++++++++---------- 3 files changed, 18 insertions(+), 16 deletions(-)
Title: Geostatistical Modelling with Likelihood and Bayes
Description: Geostatistical modelling facilities using Raster and SpatialPoints objects are provided. Non-Gaussian models are fit using INLA, and Gaussian geostatistical models use Maximum Likelihood Estimation.
Author: Patrick Brown <patrick.brown@utoronto.ca>[aut, cre], Robert Hijmans [ctb]
Maintainer: Patrick Brown <patrick.brown@utoronto.ca>
Diff between geostatsp versions 1.3.5 dated 2015-08-17 and 1.3.10 dated 2015-11-09
DESCRIPTION | 14 +- MD5 | 41 ++++---- NAMESPACE | 2 R/0gm.R | 87 ++++++++++++----- R/conditionalGmrf.R | 2 R/excProb.R | 16 ++- R/glgm.R | 28 ++--- R/lgcp.R | 14 ++ R/lgm.R | 22 ---- R/lgm.Raster.R | 165 +++++++++++++++++++++++++------- R/loglikGmrf.R | 246 +++++++++++++++++++++++++++++-------------------- R/maternGmrfPrec.R | 4 R/profLlgm.R | 41 +++----- R/spdfToBrick.R | 63 +++++++++--- man/profLlgm.Rd | 4 man/stackRasterList.Rd | 2 man/swissRain.Rd | 2 tests/glgm.R | 48 +++++---- tests/lgcp.R | 38 +++++++ tests/lgmRaster.R | 126 ++++++++++++++++++++++++- tests/loaFitted.png |only tests/profLlgm.R | 3 22 files changed, 671 insertions(+), 297 deletions(-)
Title: Rmetrics - Pricing and Evaluating Basic Options
Description: Environment for teaching
"Financial Engineering and Computational Finance".
Pricing and Evaluating Basic Options.
Author: Rmetrics Core Team,
Diethelm Wuertz [aut],
Tobias Setz [cre],
Yohan Chalabi [ctb]
Maintainer: Tobias Setz <tobias.setz@rmetrics.org>
Diff between fOptions versions 3010.83 dated 2013-06-23 and 3022.85 dated 2015-11-09
fOptions-3010.83/fOptions/src/085A-LowDiscrepancy.f |only fOptions-3022.85/fOptions/ChangeLog | 5 fOptions-3022.85/fOptions/DESCRIPTION | 32 fOptions-3022.85/fOptions/MD5 | 33 fOptions-3022.85/fOptions/NAMESPACE | 122 - fOptions-3022.85/fOptions/R/BasicAmericanOptions.R | 12 fOptions-3022.85/fOptions/R/BinomialTreeOptions.R | 922 ++++------ fOptions-3022.85/fOptions/R/HestonNandiGarchFit.R | 12 fOptions-3022.85/fOptions/R/HestonNandiOptions.R | 12 fOptions-3022.85/fOptions/R/LowDiscrepancy.R | 27 fOptions-3022.85/fOptions/R/MonteCarloOptions.R | 12 fOptions-3022.85/fOptions/R/PlainVanillaOptions.R | 12 fOptions-3022.85/fOptions/R/fOptionsEnv.R | 23 fOptions-3022.85/fOptions/R/zzz.R | 76 fOptions-3022.85/fOptions/inst/unitTests/runit.MonteCarloOptions.R | 248 +- fOptions-3022.85/fOptions/man/00fOptions-package.Rd |only fOptions-3022.85/fOptions/man/MonteCarloOptions.Rd | 586 +++--- fOptions-3022.85/fOptions/man/PlainVanillaOptions.Rd | 9 fOptions-3022.85/fOptions/src/LowDiscrepancy.f |only 19 files changed, 1000 insertions(+), 1143 deletions(-)
Title: Diversity Measures for Complex Systems
Description: Computes the most common diversity measures used in social and natural sciences, and includes new measures from interdisciplinary research.
Author: Miguel R. Guevara <miguel.guevara@upla.cl>, Dominik Hartmann
<d.hartmann@uni-hohenheim.de>, Marcelo Mendoza
<marcelo.mendoza@usm.cl>
Maintainer: Miguel R. Guevara <miguel.guevara@upla.cl>
Diff between diverse versions 0.1.0 dated 2015-10-20 and 0.1.1 dated 2015-11-09
diverse-0.1.0/diverse/man/dim_balance.Rd |only diverse-0.1.0/diverse/man/dim_disparity.Rd |only diverse-0.1.0/diverse/man/dim_variety.Rd |only diverse-0.1.0/diverse/man/diver_bio.Rd |only diverse-0.1.0/diverse/man/u_distances.Rd |only diverse-0.1.0/diverse/man/u_ubiquity.Rd |only diverse-0.1.1/diverse/DESCRIPTION | 13 diverse-0.1.1/diverse/MD5 | 37 + diverse-0.1.1/diverse/NAMESPACE | 13 diverse-0.1.1/diverse/R/data.R | 43 +- diverse-0.1.1/diverse/R/diversity.R | 528 ++++++++++++++++------------ diverse-0.1.1/diverse/R/pkgname.R | 8 diverse-0.1.1/diverse/R/utils.R | 8 diverse-0.1.1/diverse/data/scidat.RData |only diverse-0.1.1/diverse/man/balance.Rd |only diverse-0.1.1/diverse/man/dis_categories.Rd |only diverse-0.1.1/diverse/man/dis_entities.Rd |only diverse-0.1.1/diverse/man/disparity.Rd |only diverse-0.1.1/diverse/man/diverse.Rd | 8 diverse-0.1.1/diverse/man/diversity.Rd | 23 - diverse-0.1.1/diverse/man/geese.Rd | 9 diverse-0.1.1/diverse/man/pantheon.Rd | 10 diverse-0.1.1/diverse/man/read_data.Rd | 10 diverse-0.1.1/diverse/man/scidat.Rd |only diverse-0.1.1/diverse/man/ubiquity.Rd |only diverse-0.1.1/diverse/man/values.Rd |only diverse-0.1.1/diverse/man/variety.Rd |only 27 files changed, 416 insertions(+), 294 deletions(-)
Title: Calibration Plot for Proteomics
Description: Functions to check whether a vector of p-values respects the assumptions of FDR (false discovery rate) control procedures and to compute adjusted p-values.
Author: Quentin Giai Gianetto, Florence Combes, Claire Ramus, Christophe Bruley, Yohann Couté, Thomas Burger
Maintainer: Quentin Giai Gianetto <quentin2g@yahoo.fr>
Diff between cp4p versions 0.3.2 dated 2015-10-08 and 0.3.3 dated 2015-11-09
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- inst/tutorial-cp4p.pdf |binary man/calibration.plot.Rd | 8 ++------ man/cp4p-package.Rd | 6 +++--- 5 files changed, 14 insertions(+), 18 deletions(-)
Title: Model-Free Covariate Selection
Description: Model-free selection of covariates under unconfoundedness for situations where the parameter of interest is an average causal effect. This package is based on model-free backward elimination algorithms proposed in de Luna, Waernbaum and Richardson (2011). Marginal co-ordinate hypothesis testing is used in situations where all covariates are continuous while kernel-based smoothing appropriate for mixed data is used otherwise.
Author: Jenny Häggström, Emma Persson,
Maintainer: Jenny Häggström <jenny.haggstrom@umu.se>
Diff between CovSel versions 1.1 dated 2014-06-26 and 1.2.1 dated 2015-11-09
DESCRIPTION | 18 ++++++++---------- MD5 | 23 +++++++++++++---------- NAMESPACE | 3 ++- R/cov.sel.np.R | 6 +++--- data/datf.rda |binary data/datfc.rda |binary data/lalonde.rda |only inst |only man/cov.sel.Rd | 4 +++- man/cov.sel.np.Rd | 4 +++- man/datf.Rd | 39 ++++++++++++++++++++++----------------- man/datfc.Rd | 46 ++++++++++++++++++++++++---------------------- man/lalonde.Rd |only man/summary.cov.sel.Rd | 2 +- 14 files changed, 79 insertions(+), 66 deletions(-)
Title: Methods for Changepoint Detection
Description: Implements various mainstream and specialised changepoint methods for finding single and multiple changepoints within data. Many popular non-parametric and frequentist methods are included. The cpt.mean(), cpt.var(), cpt.meanvar() functions should be your first point of call.
Author: Rebecca Killick [aut, cre],
Kaylea Haynes [aut],
Idris Eckley [ths, aut],
Paul Fearnhead [ctb, ths],
Jamie Lee [ctr]
Maintainer: Rebecca Killick <r.killick@lancs.ac.uk>
Diff between changepoint versions 2.1.1 dated 2015-09-30 and 2.2 dated 2015-11-09
changepoint-2.1.1/changepoint/man/seg.size-methods.Rd |only changepoint-2.1.1/changepoint/man/seg.size.Rd |only changepoint-2.2/changepoint/DESCRIPTION | 18 changepoint-2.2/changepoint/MD5 | 201 ++-- changepoint-2.2/changepoint/NEWS | 21 changepoint-2.2/changepoint/R/BinSeg_one_func_minseglen.R | 1 changepoint-2.2/changepoint/R/CROPS.R | 25 changepoint-2.2/changepoint/R/SegNeigh_one_func_minseglen.R | 1 changepoint-2.2/changepoint/R/class_input.R | 5 changepoint-2.2/changepoint/R/cpt.R | 51 - changepoint-2.2/changepoint/R/cpt.class.R | 322 ++++++ changepoint-2.2/changepoint/R/data_input.R | 2 changepoint-2.2/changepoint/R/decision.R | 30 changepoint-2.2/changepoint/R/exp.R | 227 ---- changepoint-2.2/changepoint/R/gamma.R | 220 ---- changepoint-2.2/changepoint/R/multiple.nonparametric.R | 167 --- changepoint-2.2/changepoint/R/multiple.norm.R | 564 ------------ changepoint-2.2/changepoint/R/penalty_decision.R | 29 changepoint-2.2/changepoint/R/poisson.R | 220 ---- changepoint-2.2/changepoint/R/range_of_penalties.R | 42 changepoint-2.2/changepoint/R/single.nonparametric.R | 64 - changepoint-2.2/changepoint/R/single.norm.R | 148 --- changepoint-2.2/changepoint/R/zzz.R | 3 changepoint-2.2/changepoint/man/changepoint-package.Rd | 9 changepoint-2.2/changepoint/man/coef-methods.Rd | 1 changepoint-2.2/changepoint/man/cpt-class.Rd | 25 changepoint-2.2/changepoint/man/cpt.mean.Rd | 31 changepoint-2.2/changepoint/man/cpt.meanvar.Rd | 22 changepoint-2.2/changepoint/man/cpt.range-class.Rd | 21 changepoint-2.2/changepoint/man/cpt.reg-class.Rd | 4 changepoint-2.2/changepoint/man/cpt.var.Rd | 13 changepoint-2.2/changepoint/man/cpts--methods.Rd | 1 changepoint-2.2/changepoint/man/cpts-.Rd | 1 changepoint-2.2/changepoint/man/cpts-methods.Rd | 1 changepoint-2.2/changepoint/man/cpts.Rd | 1 changepoint-2.2/changepoint/man/cpts.full--methods.Rd | 1 changepoint-2.2/changepoint/man/cpts.full-.Rd | 1 changepoint-2.2/changepoint/man/cpts.full-methods.Rd | 1 changepoint-2.2/changepoint/man/cpts.full.Rd | 1 changepoint-2.2/changepoint/man/cpts.ts-methods.Rd | 1 changepoint-2.2/changepoint/man/cpts.ts.Rd | 1 changepoint-2.2/changepoint/man/cpttype--methods.Rd | 1 changepoint-2.2/changepoint/man/cpttype-.Rd | 3 changepoint-2.2/changepoint/man/cpttype-methods.Rd | 1 changepoint-2.2/changepoint/man/cpttype.Rd | 1 changepoint-2.2/changepoint/man/data.set--methods.Rd | 1 changepoint-2.2/changepoint/man/data.set-.Rd | 1 changepoint-2.2/changepoint/man/data.set-methods.Rd | 1 changepoint-2.2/changepoint/man/data.set.Rd | 1 changepoint-2.2/changepoint/man/data.set.ts-methods.Rd | 1 changepoint-2.2/changepoint/man/data.set.ts.Rd | 1 changepoint-2.2/changepoint/man/distribution--methods.Rd | 1 changepoint-2.2/changepoint/man/distribution-.Rd | 1 changepoint-2.2/changepoint/man/distribution-methods.Rd | 1 changepoint-2.2/changepoint/man/distribution.Rd | 1 changepoint-2.2/changepoint/man/likelihood-methods.Rd | 1 changepoint-2.2/changepoint/man/likelihood.Rd | 5 changepoint-2.2/changepoint/man/logLik-methods.Rd | 6 changepoint-2.2/changepoint/man/method--methods.Rd | 1 changepoint-2.2/changepoint/man/method-.Rd | 1 changepoint-2.2/changepoint/man/method-methods.Rd | 1 changepoint-2.2/changepoint/man/method.Rd | 1 changepoint-2.2/changepoint/man/minseglen--methods.Rd | 9 changepoint-2.2/changepoint/man/minseglen-.Rd | 1 changepoint-2.2/changepoint/man/minseglen-methods.Rd | 9 changepoint-2.2/changepoint/man/minseglen.Rd | 1 changepoint-2.2/changepoint/man/ncpts-methods.Rd | 1 changepoint-2.2/changepoint/man/ncpts.Rd | 2 changepoint-2.2/changepoint/man/ncpts.max--methods.Rd | 1 changepoint-2.2/changepoint/man/ncpts.max-.Rd | 1 changepoint-2.2/changepoint/man/ncpts.max-methods.Rd | 1 changepoint-2.2/changepoint/man/ncpts.max.Rd | 1 changepoint-2.2/changepoint/man/nseg-methods.Rd | 1 changepoint-2.2/changepoint/man/param-methods.Rd | 9 changepoint-2.2/changepoint/man/param.Rd | 1 changepoint-2.2/changepoint/man/param.est--methods.Rd | 1 changepoint-2.2/changepoint/man/param.est-.Rd | 1 changepoint-2.2/changepoint/man/param.est-methods.Rd | 1 changepoint-2.2/changepoint/man/param.est.Rd | 1 changepoint-2.2/changepoint/man/pen.type--methods.Rd | 1 changepoint-2.2/changepoint/man/pen.type-.Rd | 1 changepoint-2.2/changepoint/man/pen.type-methods.Rd | 1 changepoint-2.2/changepoint/man/pen.type.Rd | 1 changepoint-2.2/changepoint/man/pen.value--methods.Rd | 1 changepoint-2.2/changepoint/man/pen.value-.Rd | 3 changepoint-2.2/changepoint/man/pen.value-methods.Rd | 1 changepoint-2.2/changepoint/man/pen.value.Rd | 1 changepoint-2.2/changepoint/man/pen.value.full--methods.Rd | 1 changepoint-2.2/changepoint/man/pen.value.full-.Rd | 1 changepoint-2.2/changepoint/man/pen.value.full-methods.Rd | 1 changepoint-2.2/changepoint/man/pen.value.full.Rd | 1 changepoint-2.2/changepoint/man/plot-methods.Rd | 5 changepoint-2.2/changepoint/man/seg.len-methods.Rd |only changepoint-2.2/changepoint/man/seg.len.Rd |only changepoint-2.2/changepoint/man/show-methods.Rd | 1 changepoint-2.2/changepoint/man/summary-methods.Rd | 1 changepoint-2.2/changepoint/man/test.stat--methods.Rd | 1 changepoint-2.2/changepoint/man/test.stat-.Rd | 1 changepoint-2.2/changepoint/man/test.stat-methods.Rd | 1 changepoint-2.2/changepoint/man/test.stat.Rd | 1 changepoint-2.2/changepoint/src/PELT_one_func_minseglen.c | 17 changepoint-2.2/changepoint/tests/testthat/test-cptmean.R | 14 changepoint-2.2/changepoint/tests/testthat/test-cptvar.R | 29 changepoint-2.2/changepoint/tests/testthat/test-examples.R |only 104 files changed, 840 insertions(+), 1816 deletions(-)
Title: 'ade4' Tcl/Tk Graphical User Interface
Description: A Tcl/Tk GUI for some basic functions in the 'ade4' package.
Author: Jean Thioulouse <jean.thioulouse@univ-lyon1.fr>, Stéphane Dray <stephane.dray@univ-lyon1.fr>, Aurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Maintainer: Aurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Diff between ade4TkGUI versions 0.2-6 dated 2012-11-13 and 0.2-9 dated 2015-11-09
DESCRIPTION | 28 MD5 | 72 - NAMESPACE | 18 R/ade4TkGUI.R | 470 +++++------ R/choose.R | 337 ++----- R/dialog.MCTests.R | 9 R/dialog.between.R | 13 R/dialog.cca.R | 9 R/dialog.coinertia.R | 9 R/dialog.discrimin.R | 9 R/dialog.dpcoa.R | 9 R/dialog.dudi.acm.R | 9 R/dialog.dudi.coa.R | 9 R/dialog.dudi.dec.R | 9 R/dialog.dudi.display.R | 745 +++++++---------- R/dialog.dudi.fca.R | 9 R/dialog.dudi.fpca.R | 9 R/dialog.dudi.mix.R | 9 R/dialog.dudi.nsc.R | 9 R/dialog.dudi.pca.R | 12 R/dialog.dudi.pco.R | 9 R/dialog.pcaiv.R | 11 R/dialog.pcaivortho.R | 9 R/dialog.s.arrow.R | 307 ++----- R/dialog.s.chull.R | 343 ++------ R/dialog.s.class.R | 323 +++++++ R/dialog.s.corcircle.R | 184 +--- R/dialog.s.label.R | 324 ++----- R/dialog.s.match.R | 311 ++----- R/dialog.s.value.R | 413 +++------ R/dialog.within.R | 11 R/ordiClust.R | 1584 ++++++++++++++++++------------------- R/s.explore.R | 1944 +++++++++++++++++++++++----------------------- man/ade4TkGUI-internal.Rd | 9 man/ade4TkGUI.Rd | 41 man/explore.Rd | 4 man/ordiClust.Rd | 4 37 files changed, 3534 insertions(+), 4100 deletions(-)
Title: Seismic Time Series Analysis Tools
Description: Multiple interactive codes to view and analyze seismic data, via spectrum analysis, wavelet transforms, particle motion, hodograms. Includes general time-series tools, plotting, filtering, interactive display.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees <jonathan.lees@unc.edu>
Diff between RSEIS versions 3.4-5 dated 2015-04-28 and 3.5-2 dated 2015-11-09
DESCRIPTION | 8 +- MD5 | 28 ++++----- NAMESPACE | 14 ++++ R/GLUE.GET.seis.R | 6 - R/JSEGY.seis.R | 78 ++++++++++++++----------- R/PLOT.SEISN.R | 62 +++++++++++--------- R/read1segy.R | 34 ++++++++-- R/rseis2segy.R | 164 ++++++++++++++++++++++++++++++++++++++++------------- R/sigconvGR.R | 4 - R/swig.R | 4 - R/write1segy.R | 13 +++- man/PLOT.SEISN.Rd | 3 man/grotseis.Rd | 2 man/sigconvGR.Rd | 16 +---- man/uwpfile2ypx.Rd | 17 +++++ 15 files changed, 302 insertions(+), 151 deletions(-)
Title: Joint Modeling of Longitudinal and Time-to-Event Data under a
Bayesian Approach
Description: Shared parameter models for the joint modeling of longitudinal and time-to-event data using MCMC.
Author: Dimitris Rizopoulos <d.rizopoulos@erasmusmc.nl>
Maintainer: Dimitris Rizopoulos <d.rizopoulos@erasmusmc.nl>
Diff between JMbayes versions 0.7-2 dated 2015-05-04 and 0.7-8 dated 2015-11-09
DESCRIPTION | 8 +++--- MD5 | 48 +++++++++++++++++++-------------------- NAMESPACE | 34 ++++++++++++++------------- R/MCMCfit.R | 56 ++++++++++++++++++++++++++++------------------ R/ModelMats.R | 9 ++++--- R/S.b.R | 5 ++-- R/dropAttr.R | 12 ++++++--- R/dynInfo.R | 4 +-- R/fixNames.R | 4 ++- R/globals.R | 2 - R/initSurvival.R | 11 +++++++-- R/jointModelBayes.R | 9 ++++--- R/log.posterior.b.R | 3 -- R/predict.JMbayes.R | 4 +-- R/print.summary.JMbayes.R | 11 ++++----- R/summary.JMbayes.R | 5 +--- R/survfitJM.JMbayes.R | 4 +-- data/aids.id.rda |binary data/aids.rda |binary data/pbc2.id.rda |binary data/pbc2.rda |binary data/prothro.rda |binary data/prothros.rda |binary inst/NEWS | 18 ++++++++++++++ man/JMbayes.Rd | 4 +-- 25 files changed, 151 insertions(+), 100 deletions(-)
Title: Joint Modeling of Longitudinal and Survival Data
Description: Shared parameter models for the joint modeling of longitudinal and time-to-event data.
Author: Dimitris Rizopoulos <d.rizopoulos@erasmusmc.nl>
Maintainer: Dimitris Rizopoulos <d.rizopoulos@erasmusmc.nl>
Diff between JM versions 1.4-0 dated 2015-06-23 and 1.4-2 dated 2015-11-09
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NAMESPACE | 30 +++++++++++++++++++----------- R/jointModel.R | 3 +-- R/plot.jointModel.R | 3 +-- R/predict.jointModel.R | 1 + R/survfitJM.jointModel.R | 4 ++-- inst/NEWS | 8 ++++++++ man/JM.Rd | 4 ++-- 9 files changed, 46 insertions(+), 31 deletions(-)
Title: Global Value Chains Tools
Description: Several tools for Global Value Chain ('GVC') analysis are
implemented.
Author: Bastiaan Quast [aut, cre],
Victor Kummritz [aut]
Maintainer: Bastiaan Quast <bquast@gmail.com>
Diff between gvc versions 0.5.1 dated 2015-10-30 and 0.5.2 dated 2015-11-09
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS | 6 ++++++ R/gvc.R | 2 +- 4 files changed, 13 insertions(+), 7 deletions(-)
Title: Generating Multi-State Survival Data
Description: Generation of survival data with one (binary)
time-dependent covariate. Generation of survival data arising
from a progressive illness-death model.
Author: Artur Araujo, Luis Meira-Machado
<lmachado@math.uminho.pt> and Susana Faria
<sfaria@math.uminho.pt>
Maintainer: Artur Araujo <artur.stat@gmail.com>
Diff between genSurv versions 1.0.2 dated 2014-05-07 and 1.0.3 dated 2015-11-09
DESCRIPTION | 14 +++++++------- MD5 | 24 ++++++++++++------------ NAMESPACE | 1 + inst/CITATION | 4 ++-- inst/NEWS.Rd | 8 +++++++- man/as.CMM.Rd | 2 +- man/as.TDCM.Rd | 2 +- man/as.THMM.Rd | 2 +- man/genCMM.Rd | 2 +- man/genCPHM.Rd | 2 +- man/genSurv-package.Rd | 10 +++++----- man/genTDCM.Rd | 2 +- man/genTHMM.Rd | 2 +- 13 files changed, 41 insertions(+), 34 deletions(-)
Title: Estimation of Transition Probabilities in Multistate Models
Description: Estimation of transition probabilities for the
illness-death model and or the three-state progressive model.
Author: Artur Araujo, Javier Roca-Pardinas <roca@uvigo.es>
and Luis Meira-Machado <lmachado@math.uminho.pt>
Maintainer: Artur Araujo <artur.stat@gmail.com>
Diff between TPmsm versions 1.2.0 dated 2014-12-09 and 1.2.1 dated 2015-11-09
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NAMESPACE | 4 ++-- inst/NEWS.Rd | 6 ++++++ man/TPmsm-package.Rd | 4 ++-- 5 files changed, 19 insertions(+), 13 deletions(-)
Title: Smooth Hazard Ratio Curves Taking a Reference Value
Description: Provides flexible hazard ratio curves allowing non-linear
relationships between continuous predictors and survival. To
better understand the effects that each continuous covariate
has on the outcome, results are ex pressed in terms of hazard
ratio curves, taking a specific covariate value as reference.
Confidence bands for these curves are also derived.
Author: Artur Araujo and Luis Meira-Machado
<lmachado@math.uminho.pt>
Maintainer: Artur Araujo <artur.stat@gmail.com>
Diff between smoothHR versions 1.0.1 dated 2014-04-08 and 1.0.2 dated 2015-11-09
DESCRIPTION | 14 - MD5 | 26 +-- NAMESPACE | 4 R/dfmacox.R | 386 ++++++++++++++++++++++++------------------------ R/smoothHR.R | 184 +++++++++++----------- inst/CITATION | 76 ++++----- inst/NEWS.Rd | 6 man/dfmacox.Rd | 162 ++++++++++---------- man/plot.HR.Rd | 154 +++++++++---------- man/predict.HR.Rd | 130 ++++++++-------- man/print.HR.Rd | 106 ++++++------- man/smoothHR-package.Rd | 66 ++++---- man/smoothHR.Rd | 146 +++++++++--------- man/whas500.Rd | 64 +++---- 14 files changed, 766 insertions(+), 758 deletions(-)
Title: Analysis of Queueing Networks and Models
Description: It provides versatile tools for analysis of birth and death based Markovian Queueing Models
and Single and Multiclass Product-Form Queueing Networks.
It implements M/M/1, M/M/c, M/M/Infinite, M/M/1/K, M/M/c/K, M/M/c/c, M/M/1/K/K, M/M/c/K/K, M/M/c/K/m, M/M/Infinite/K/K,
Multiple Channel Open Jackson Networks, Multiple Channel Closed Jackson Networks,
Single Channel Multiple Class Open Networks, Single Channel Multiple Class Closed Networks
and Single Channel Multiple Class Mixed Networks.
Also it provides a B-Erlang, C-Erlang and Engset calculators.
This work is dedicated to the memory of D. Sixto Rios Insua.
Author: Pedro Canadilla
Maintainer: Pedro Canadilla <pedro.canadilla@gmail.com>
Diff between queueing versions 0.2.5 dated 2015-05-15 and 0.2.6 dated 2015-11-09
ChangeLog | 3 +++ DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NAMESPACE | 7 +++++++ 4 files changed, 17 insertions(+), 7 deletions(-)
Title: Routines for Fitting Kinetic Models with One or More State
Variables to Chemical Degradation Data
Description: Calculation routines based on the FOCUS Kinetics Report (2006).
Includes a function for conveniently defining differential equation models,
model solution based on eigenvalues if possible or using numerical solvers
and a choice of the optimisation methods made available by the 'FME' package.
If a C compiler (on windows: 'Rtools') is installed, differential
equation models are solved using compiled C functions.
Please note that no warranty is implied for correctness of results or fitness
for a particular purpose.
Author: Johannes Ranke [aut, cre, cph],
Katrin Lindenberger [ctb],
René Lehmann [ctb],
Eurofins Regulatory AG [cph]
Maintainer: Johannes Ranke <jranke@uni-bremen.de>
Diff between mkin versions 0.9-40 dated 2015-07-21 and 0.9-41 dated 2015-11-09
mkin-0.9-40/mkin/vignettes/compiled_models.html |only mkin-0.9-41/mkin/DESCRIPTION | 10 +- mkin-0.9-41/mkin/MD5 | 54 ++++++++------ mkin-0.9-41/mkin/NAMESPACE | 3 mkin-0.9-41/mkin/NEWS.md | 92 ++++++++++++++---------- mkin-0.9-41/mkin/R/mkinds.R |only mkin-0.9-41/mkin/R/mkinfit.R | 15 ++- mkin-0.9-41/mkin/R/mkinmod.R | 16 ++++ mkin-0.9-41/mkin/R/mkinsub.R | 6 - mkin-0.9-41/mkin/R/plot.mkinfit.R | 10 ++ mkin-0.9-41/mkin/README.md | 11 ++ mkin-0.9-41/mkin/build/vignette.rds |binary mkin-0.9-41/mkin/inst/doc/FOCUS_D.html | 4 - mkin-0.9-41/mkin/inst/doc/FOCUS_L.html | 4 - mkin-0.9-41/mkin/inst/doc/FOCUS_Z.pdf |binary mkin-0.9-41/mkin/inst/doc/compiled_models.R |only mkin-0.9-41/mkin/inst/doc/compiled_models.Rmd |only mkin-0.9-41/mkin/inst/doc/compiled_models.html |only mkin-0.9-41/mkin/inst/doc/mkin.pdf |binary mkin-0.9-41/mkin/inst/examples |only mkin-0.9-41/mkin/man/mkin_long_to_wide.Rd | 2 mkin-0.9-41/mkin/man/mkin_wide_to_long.Rd | 2 mkin-0.9-41/mkin/man/mkinds.Rd |only mkin-0.9-41/mkin/man/mkinfit.Rd | 2 mkin-0.9-41/mkin/man/mkinmod.Rd | 4 - mkin-0.9-41/mkin/man/mkinplot.Rd | 3 mkin-0.9-41/mkin/man/mkinsub.Rd | 13 +++ mkin-0.9-41/mkin/man/plot.mkinfit.Rd | 3 mkin-0.9-41/mkin/man/plot.mmkin.Rd | 2 mkin-0.9-41/mkin/man/print.mkinds.Rd |only mkin-0.9-41/mkin/man/print.mkinmod.Rd |only mkin-0.9-41/mkin/man/summary.mkinfit.Rd | 2 mkin-0.9-41/mkin/vignettes/compiled_models.Rmd |only 33 files changed, 165 insertions(+), 93 deletions(-)
Title: Maximum Likelihood Estimation and Related Tools
Description: Functions for Maximum Likelihood (ML) estimation and non-linear
optimization, and related tools. It includes a unified way to call
different optimizers, and classes and methods to handle the results from
the ML viewpoint. It also includes a number of convenience tools for testing
and developing your own models.
Author: Ott Toomet <otoomet@gmail.com>,
Arne Henningsen <arne.henningsen@gmail.com>,
with contributions from Spencer Graves and Yves Croissant
Maintainer: Ott Toomet <otoomet@gmail.com>
Diff between maxLik versions 1.3-2 dated 2015-10-29 and 1.3-4 dated 2015-11-09
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS | 11 +++++++++++ R/maxNR.R | 5 ----- R/maxNRCompute.R | 39 ++++++++++++++++++++++++++++++--------- R/maxOptim.R | 3 ++- R/summary.maxLik.R | 2 +- man/maxBFGS.Rd | 4 +++- 8 files changed, 58 insertions(+), 28 deletions(-)
Title: Statistical Analysis and Data Display: Heiberger and Holland
Description: Support software for Statistical Analysis and Data Display (First Edition, Springer, ISBN 0-387-40270-5, 2004) and (Second Edition, Springer, ISBN 978-1-4939-2121-8, anticipated 2015) by Richard M. Heiberger and Burt Holland. This contemporary presentation of statistical methods features extensive use of graphical displays for exploring data and for displaying the analysis. The second edition includes redesigned graphics and additional chapters. The authors emphasize how to construct and interpret graphs, discuss principles of graphical design, and show how accompanying traditional tabular results are used to confirm the visual impressions derived directly from the graphs. Many of the graphical formats are novel and appear here for the first time in print. All chapters have exercises. All functions introduced in the book are in the package. R code for all examples, both graphs and tables, in the book is included in the scripts directory of the package.
Author: Richard M. Heiberger
Maintainer: Richard M. Heiberger <rmh@temple.edu>
Diff between HH versions 3.1-21 dated 2015-08-23 and 3.1-23 dated 2015-11-09
HH-3.1-21/HH/inst/shiny/NormalAndTplot |only HH-3.1-23/HH/DESCRIPTION | 8 HH-3.1-23/HH/MD5 | 81 ++--- HH-3.1-23/HH/NAMESPACE | 5 HH-3.1-23/HH/NEWS | 69 ++++ HH-3.1-23/HH/R/ancovaplot.R | 4 HH-3.1-23/HH/R/formatHex.R | 82 +++-- HH-3.1-23/HH/R/lm.case.R | 366 ++++++++++++++------------ HH-3.1-23/HH/R/lmplot.R | 18 - HH-3.1-23/HH/R/normal.and.t.R | 14 HH-3.1-23/HH/R/regrDiagn.R | 1 HH-3.1-23/HH/R/residual.plots.lattice.R | 30 +- HH-3.1-23/HH/inst/scripts/hh2/PrcnApx.R | 42 +- HH-3.1-23/HH/inst/scripts/hh2/ShinyApx.R | 8 HH-3.1-23/HH/inst/scripts/hh2/conc.R | 39 +- HH-3.1-23/HH/inst/scripts/hh2/dsgn.R | 84 +++-- HH-3.1-23/HH/inst/scripts/hh2/dsgntwo.R | 118 ++++---- HH-3.1-23/HH/inst/scripts/hh2/dstr.R | 145 ++++++---- HH-3.1-23/HH/inst/scripts/hh2/grap.R | 138 +++++---- HH-3.1-23/HH/inst/scripts/hh2/hotdog-ancova.r | 9 HH-3.1-23/HH/inst/scripts/hh2/iinf.R | 66 ++-- HH-3.1-23/HH/inst/scripts/hh2/logi.R | 65 ++-- HH-3.1-23/HH/inst/scripts/hh2/mcomp.R | 66 +--- HH-3.1-23/HH/inst/scripts/hh2/mthp.R | 6 HH-3.1-23/HH/inst/scripts/hh2/npar.R | 8 HH-3.1-23/HH/inst/scripts/hh2/oway.R | 30 +- HH-3.1-23/HH/inst/scripts/hh2/rega.R | 80 +++-- HH-3.1-23/HH/inst/scripts/hh2/regb.R | 24 - HH-3.1-23/HH/inst/scripts/hh2/regbb.R | 57 ++-- HH-3.1-23/HH/inst/scripts/hh2/regc.R | 48 +-- HH-3.1-23/HH/inst/scripts/hh2/tser.R | 74 ++--- HH-3.1-23/HH/inst/scripts/hh2/tway.R | 92 +++--- HH-3.1-23/HH/inst/scripts/hh2/twtb.R | 70 ++-- HH-3.1-23/HH/inst/scripts/hh2/typg.R | 23 + HH-3.1-23/HH/man/NormalAndTplot.Rd | 16 + HH-3.1-23/HH/man/ancovaplot.Rd | 5 HH-3.1-23/HH/man/formatHex.Rd | 18 - HH-3.1-23/HH/man/lm.case.Rd | 98 +++--- HH-3.1-23/HH/man/lmplot.Rd | 19 + HH-3.1-23/HH/man/print.latticeresids.Rd | 47 ++- HH-3.1-23/HH/man/residual.plots.lattice.Rd | 12 41 files changed, 1246 insertions(+), 939 deletions(-)
Title: Topographic and Geologic Mapping
Description: Set of routines for making Map Projections (forward and inverse), Topographic Maps, Perspective plots, Geological Maps, geological map symbols, geological databases, interactive plotting and selection of focus regions.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees <jonathan.lees@unc.edu>
Diff between GEOmap versions 2.3-5 dated 2015-04-29 and 2.3-8 dated 2015-11-09
DESCRIPTION | 10 +++--- MD5 | 16 ++++++---- NAMESPACE | 11 +++++++ R/GETXprofile.R | 8 ++--- R/distaz.R | 2 + R/getETOPO.R |only R/subsetTOPO.R | 79 ++++++++++++++++++++++------------------------------- demo/GMAP.R | 45 ++++++++++++++++++++++++------ man/GETXprofile.Rd | 3 +- man/getETOPO.Rd |only 10 files changed, 102 insertions(+), 72 deletions(-)
Title: Modelling Spatial Variation in Disease Risk for Areal Data
Description: Formatting of population and case data, calculation of Standardized Incidence Ratios, and fitting the BYM model using INLA.
Author: Patrick Brown <patrick.brown@utoronto.ca>
Maintainer: Patrick Brown <patrick.brown@utoronto.ca>
Diff between diseasemapping versions 1.2.3 dated 2015-07-07 and 1.2.7 dated 2015-11-09
diseasemapping-1.2.3/diseasemapping/R/mergeBugsData.R |only diseasemapping-1.2.3/diseasemapping/man/mergeBugsData.Rd |only diseasemapping-1.2.7/diseasemapping/DESCRIPTION | 14 - diseasemapping-1.2.7/diseasemapping/MD5 | 18 - diseasemapping-1.2.7/diseasemapping/NAMESPACE | 1 diseasemapping-1.2.7/diseasemapping/R/bym.R | 128 ++++-------- diseasemapping-1.2.7/diseasemapping/data/casedata.RData |binary diseasemapping-1.2.7/diseasemapping/data/kentucky.RData |binary diseasemapping-1.2.7/diseasemapping/data/popdata.RData |binary diseasemapping-1.2.7/diseasemapping/data/referencepop.RData |binary diseasemapping-1.2.7/diseasemapping/tests/bym.R | 54 ++++- 11 files changed, 112 insertions(+), 103 deletions(-)
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Title: Complex Survey Structural Equation Modeling (SEM)
Description: Fit structural equation models (SEM) including factor analysis,
multivariate regression models with latent variables and many other latent
variable models while correcting estimates, standard errors, and
chi-square-derived fit measures for a complex sampling design.
Incorporate clustering, stratification, sampling weights, and
finite population corrections into a SEM analysis.
Wrapper around packages lavaan and survey.
Author: Daniel Oberski
Maintainer: Daniel Oberski <daniel.oberski@gmail.com>
Diff between lavaan.survey versions 1.1 dated 2014-02-21 and 1.1.3 dated 2015-11-09
DESCRIPTION | 15 ++++---- MD5 | 22 +++++++----- NAMESPACE | 15 ++++++-- R/lavaan.survey.R | 89 ++++++++++++++++++++++++-------------------------- data/cardinale.rda |binary data/ess.dk.rda |binary data/ess4.gb.rda |binary data/liss.rda |binary data/pisa.be.2003.rda |binary tests |only 10 files changed, 76 insertions(+), 65 deletions(-)