Title: Bayesian Inference for Beta Regression and Zero-or-One Inflated
Beta Regression
Description: Fits beta regression and zero-or-one inflated beta regression and obtains Bayesian Inference of the model via the Markov Chain Monte Carlo approach implemented in JAGS.
Author: Fang Liu <fang.liu.131@nd.edu> with contributions from Yunchuan Kong <ykong@cuhk.edu.hk>
Maintainer: Fang Liu <fang.liu.131@nd.edu>
Diff between zoib versions 1.3.2 dated 2015-09-29 and 1.3.3 dated 2015-11-14
DESCRIPTION | 12 ++++++------ MD5 | 50 +++++++++++++++++++++++++------------------------- R/fixed.R | 4 ++-- R/fixed0.R | 6 +++--- R/fixed01.R | 8 ++++---- R/fixed1.R | 6 +++--- R/joint.1z.R | 4 ++-- R/joint.1z0.R | 6 +++--- R/joint.1z01.R | 8 ++++---- R/joint.1z1.R | 6 +++--- R/joint.2z.R | 11 +++++++---- R/joint.2z0.R | 30 +++++++++++++++--------------- R/joint.2z01.R | 33 +++++++++++++++++---------------- R/joint.2z1.R | 30 +++++++++++++++--------------- R/sep.1z.R | 8 ++++---- R/sep.1z0.R | 6 +++--- R/sep.1z01.R | 8 ++++---- R/sep.1z1.R | 6 +++--- R/sep.2z.R | 8 ++++---- R/sep.2z0.R | 30 +++++++++++++++--------------- R/sep.2z01.R | 32 ++++++++++++++++---------------- R/sep.2z1.R | 30 +++++++++++++++--------------- R/zoib.R | 1 - man/zoib-package.Rd | 4 ++-- man/zoib.Rd | 2 +- tests/test2.R | 28 +++++++++++++++++++++++++++- 26 files changed, 203 insertions(+), 174 deletions(-)
Title: Turner Miscellaneous
Description: Miscellaneous data and utility functions
for manipulating data and your R environment.
Author: Stephen Turner <vustephen@gmail.com>
Maintainer: Stephen Turner <vustephen@gmail.com>
Diff between Tmisc versions 0.1.1 dated 2015-07-31 and 0.1.2 dated 2015-11-14
DESCRIPTION | 9 ++-- MD5 | 82 +++++++++++++++++++++++--------------------- NAMESPACE | 4 +- R/Tcols.R | 3 - R/counts2fpkm.R |only R/datename.R | 7 +-- R/deseqresult2tbl.R | 5 +- R/dfsigfig.R | 5 +- R/lsa.R | 5 +- R/lsp.R | 5 +- R/nin.R | 5 +- R/nn.R | 5 +- R/o.R | 5 +- R/peek.R |only R/propmiss.R | 5 +- R/read.cb.R | 5 +- R/registration.R | 5 +- R/rownames_to_symprobe.R | 5 +- R/saveit.R | 4 +- R/sicb.R | 5 +- R/unfactor.R | 5 +- R/unrowname.R | 4 +- README.md | 16 +++++--- man/Tcols.Rd | 7 +-- man/Tmisc.Rd | 2 - man/counts2fpkm.Rd |only man/datename.Rd | 3 + man/deseqresult2tbl.Rd | 3 + man/dfsigfig.Rd | 3 + man/grapes-nin-grapes.Rd | 3 + man/lsa.Rd | 7 ++- man/lsp.Rd | 3 + man/nn.Rd | 3 + man/o.Rd | 3 + man/peek.Rd |only man/propmiss.Rd | 3 + man/quartet.Rd | 6 +-- man/read.cb.Rd | 3 + man/registration.Rd | 7 ++- man/rownames_to_symprobe.Rd | 3 + man/saveit.Rd | 3 + man/sicb.Rd | 3 + man/unfactor.Rd | 3 + man/unrowname.Rd | 3 + 44 files changed, 138 insertions(+), 127 deletions(-)
Title: Import Stata Data Files
Description: Function to read and write the Stata file format.
Author: Jan Marvin Garbuszus [aut],
Sebastian Jeworutzki [aut, cre],
R Core Team [cph],
Magnus Thor Torfason [ctb]
Maintainer: Sebastian Jeworutzki <Sebastian.Jeworutzki@ruhr-uni-bochum.de>
Diff between readstata13 versions 0.8 dated 2015-10-07 and 0.8.1 dated 2015-11-14
DESCRIPTION | 12 +++-- MD5 | 22 +++++----- R/read.R | 65 ++++++++++++++------------------ R/save.R | 6 +- R/tools.R | 6 ++ README.md | 11 +++-- inst/include/readstata.h | 18 ++++++++ inst/include/swap_endian.h | 2 man/read.dta13.Rd | 39 +++++++++---------- man/save.dta13.Rd | 4 - src/rcpp_pre13_savestata.cpp | 4 - src/read_dta.cpp | 87 ++++++++++++++++++++++++++----------------- 12 files changed, 162 insertions(+), 114 deletions(-)
Title: Use Python from Within R
Description: Interact with Python from within R.
Author: Florian Schwendinger [aut, cre]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between PythonInR versions 0.1-1 dated 2015-09-19 and 0.1-2 dated 2015-11-14
ChangeLog |only DESCRIPTION | 6 ++--- MD5 | 25 ++++++++++++----------- R/PyImport.R | 4 +-- R/PySet.R | 10 ++++----- R/PySource.R | 54 ++++++++++++++++++++++++++++++++++++-------------- R/PythonInR.R | 1 R/zzz.R | 2 + README.md | 33 ++++++++++++++++++++++++++++++ man/BEGIN.Python.Rd | 10 ++++++++- man/pyConnect.Rd | 3 ++ man/pyImport.Rd | 4 +-- man/pySet.Rd | 14 ++++++++++++ src/PythonFunctions.c | 9 +++----- 14 files changed, 130 insertions(+), 45 deletions(-)
Title: Utility Functions by Youyi, Krisz and Others
Description: A miscellaneous set of functions for printing, plotting, kernels, etc. Additional contributors are acknowledged on individual function help pages.
Author: Youyi Fong <yfong@fhcrc.org>, Krisztian Sebestyen <ksebestyen@gmail.com>
Maintainer: Youyi Fong <yfong@fhcrc.org>
Diff between kyotil versions 2015.5-20 dated 2015-05-20 and 2015.11-13 dated 2015-11-14
kyotil-2015.11-13/kyotil/DESCRIPTION | 13 +- kyotil-2015.11-13/kyotil/MD5 | 52 +++++---- kyotil-2015.11-13/kyotil/NAMESPACE | 30 ++++- kyotil-2015.11-13/kyotil/R/age_calc.R | 3 kyotil-2015.11-13/kyotil/R/base.R | 15 ++ kyotil-2015.11-13/kyotil/R/matrix2.R | 60 ++++++----- kyotil-2015.11-13/kyotil/R/misc.R | 49 +++++++-- kyotil-2015.11-13/kyotil/R/plotting.R | 70 ++++--------- kyotil-2015.11-13/kyotil/R/print.R | 32 ++--- kyotil-2015.11-13/kyotil/R/random.R | 10 + kyotil-2015.11-13/kyotil/R/regression.model.functions.R | 33 +++++- kyotil-2015.11-13/kyotil/R/stat.R | 6 - kyotil-2015.11-13/kyotil/R/tests.R | 2 kyotil-2015.11-13/kyotil/build/vignette.rds |binary kyotil-2015.11-13/kyotil/inst/unitTests/runit.matrix2.R | 4 kyotil-2015.11-13/kyotil/man/base.Rd | 8 + kyotil-2015.11-13/kyotil/man/get.sim.res.Rd |only kyotil-2015.11-13/kyotil/man/math.Rd | 5 kyotil-2015.11-13/kyotil/man/matrix2.Rd | 6 - kyotil-2015.11-13/kyotil/man/misc.Rd | 6 - kyotil-2015.11-13/kyotil/man/plotting.Rd | 19 +-- kyotil-2015.11-13/kyotil/man/random.Rd | 9 + kyotil-2015.11-13/kyotil/man/regression.model.functions.Rd | 7 - kyotil-2015.11-13/kyotil/man/stat.Rd | 7 - kyotil-2015.11-13/kyotil/man/tests.Rd | 6 - kyotil-2015.11-13/kyotil/src/Call_matrix.c | 24 ++++ kyotil-2015.11-13/kyotil/src/wilcoxpp_test.c |only kyotil-2015.11-13/kyotil/vignettes/kyotil-vignette.tex |only kyotil-2015.5-20/kyotil/vignettes/kyotil-vignette.bib |only 29 files changed, 312 insertions(+), 164 deletions(-)
Title: Process Biogas Data and Predict Biogas Production
Description: Functions for working with biogas data. Both low- and high-level functions are included for carrying out common tasks for analysis of biogas and related data. Molar mass and calculated oxygen demand (COD') can be determined from a chemical formula. Measured gas volume can be corrected for water vapor and to (possibly user-defined) standard temperature and pressure. Gas composition, cumulative production, or other variables can be interpolated to a specified time. Cumulative biogas and methane production (and rates) can be calculated from individual biogas volume (or reactor mass) and biogas composition measurements for any number of reactors. With cumulative methane production data and data on reactor contents, biochemical methane potential (BMP) can be calculated and summarized, including subtraction of the inoculum contribution and normalization by substrate mass. Cumulative production and production rates can be summarized in several different ways (e.g., omitting normalization) using the same function. Lastly, biogas and methane production can be predicted from substrate composition and additional, optional data.
Author: Sasha D. Hafner [aut, cre], Charlotte Rennuit [aut], Jin Mi Triolo [ctb], Ali Heidarzadeh Vazifehkhoran [ctb]
Maintainer: Sasha D. Hafner <saha@kbm.sdu.dk>
Diff between biogas versions 1.2.0 dated 2015-11-13 and 1.2.1 dated 2015-11-14
biogas-1.2.0/biogas/inst/doc/predBg.R |only biogas-1.2.0/biogas/inst/doc/predBg.Rnw |only biogas-1.2.0/biogas/inst/doc/predBg.pdf |only biogas-1.2.0/biogas/vignettes/predBg.Rnw |only biogas-1.2.1/biogas/ChangeLog | 21 +++++++ biogas-1.2.1/biogas/DESCRIPTION | 8 +- biogas-1.2.1/biogas/MD5 | 42 +++++++------- biogas-1.2.1/biogas/R/calcCOD.R | 6 +- biogas-1.2.1/biogas/build/vignette.rds |binary biogas-1.2.1/biogas/inst/doc/biogas_quick_start.Rnw | 12 ++-- biogas-1.2.1/biogas/inst/doc/biogas_quick_start.pdf |binary biogas-1.2.1/biogas/inst/doc/predBg_function.R |only biogas-1.2.1/biogas/inst/doc/predBg_function.Rnw |only biogas-1.2.1/biogas/inst/doc/predBg_function.pdf |only biogas-1.2.1/biogas/man/biogas-package.Rd | 32 ++++++----- biogas-1.2.1/biogas/man/calcCOD.Rd | 11 +++ biogas-1.2.1/biogas/man/cumBg.Rd | 43 +++++++++------ biogas-1.2.1/biogas/man/interp.Rd | 6 +- biogas-1.2.1/biogas/man/mass2vol.Rd | 12 ++-- biogas-1.2.1/biogas/man/molMass.Rd | 11 +++ biogas-1.2.1/biogas/man/predBg.Rd | 9 +-- biogas-1.2.1/biogas/man/stdVol.Rd | 19 ++++-- biogas-1.2.1/biogas/man/summBg.Rd | 54 +++++++++++-------- biogas-1.2.1/biogas/man/vol2mass.Rd | 24 +++++--- biogas-1.2.1/biogas/vignettes/biogas_quick_start.Rnw | 12 ++-- biogas-1.2.1/biogas/vignettes/predBg_function.Rnw |only 26 files changed, 201 insertions(+), 121 deletions(-)
Title: Mining Association Rules and Frequent Itemsets
Description: Provides the infrastructure for representing,
manipulating and analyzing transaction data and patterns (frequent
itemsets and association rules). Also provides interfaces to
C implementations of the association mining algorithms Apriori and Eclat
by C. Borgelt.
Author: Michael Hahsler [aut, cre, cph],
Christian Buchta [aut, cph],
Bettina Gruen [aut, cph],
Kurt Hornik [aut, cph],
Christian Borgelt [ctb, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between arules versions 1.2-1 dated 2015-09-21 and 1.3-0 dated 2015-11-14
arules-1.2-1/arules/inst/tests |only arules-1.2-1/arules/vignettes/arules-classes.eps |only arules-1.3-0/arules/DESCRIPTION | 10 - arules-1.3-0/arules/MD5 | 144 +++++++++++------------ arules-1.3-0/arules/NAMESPACE | 5 arules-1.3-0/arules/R/AAADefs.R | 2 arules-1.3-0/arules/R/AllClasses.R | 2 arules-1.3-0/arules/R/AllGenerics.R | 10 - arules-1.3-0/arules/R/Matrix.R | 2 arules-1.3-0/arules/R/abbreviate.R | 69 ++++------- arules-1.3-0/arules/R/addComplement.R | 2 arules-1.3-0/arules/R/aggregate.R | 39 +++--- arules-1.3-0/arules/R/appearance.R | 2 arules-1.3-0/arules/R/apriori.R | 7 - arules-1.3-0/arules/R/associations.R | 13 -- arules-1.3-0/arules/R/control.R | 2 arules-1.3-0/arules/R/coverage.R | 2 arules-1.3-0/arules/R/crossTable.R | 2 arules-1.3-0/arules/R/discretize.R | 2 arules-1.3-0/arules/R/dissimilarity.R | 2 arules-1.3-0/arules/R/eclat.R | 7 - arules-1.3-0/arules/R/image.R | 2 arules-1.3-0/arules/R/inspect.R | 2 arules-1.3-0/arules/R/interestMeasures.R | 2 arules-1.3-0/arules/R/is.closed.R | 2 arules-1.3-0/arules/R/is.maximal.R | 2 arules-1.3-0/arules/R/is.superset.R | 2 arules-1.3-0/arules/R/itemCoding.R | 2 arules-1.3-0/arules/R/itemFrequency.R | 2 arules-1.3-0/arules/R/itemMatrix.R | 32 ++++- arules-1.3-0/arules/R/itemsets.R | 10 + arules-1.3-0/arules/R/parameter.R | 2 arules-1.3-0/arules/R/pmml.R | 2 arules-1.3-0/arules/R/predict.R | 2 arules-1.3-0/arules/R/random.transactions.R | 2 arules-1.3-0/arules/R/read_write.R | 85 ++++++------- arules-1.3-0/arules/R/ruleInduction.R | 69 +++++++---- arules-1.3-0/arules/R/rules.R | 9 + arules-1.3-0/arules/R/sample.R | 2 arules-1.3-0/arules/R/sets.R | 2 arules-1.3-0/arules/R/setsItemwise.R | 2 arules-1.3-0/arules/R/subset.R | 2 arules-1.3-0/arules/R/support.R | 2 arules-1.3-0/arules/R/supportingTransactions.R | 2 arules-1.3-0/arules/R/tidLists.R | 21 +++ arules-1.3-0/arules/R/transactions.R | 9 + arules-1.3-0/arules/R/warm.R | 2 arules-1.3-0/arules/README.md |only arules-1.3-0/arules/inst/NEWS | 14 ++ arules-1.3-0/arules/inst/doc/arules.pdf |binary arules-1.3-0/arules/man/abbreviate.Rd | 27 +++- arules-1.3-0/arules/man/aggregate.Rd | 73 +++++++---- arules-1.3-0/arules/man/interestMeasure.Rd | 26 ++-- arules-1.3-0/arules/man/read.transactions.Rd | 38 +++--- arules-1.3-0/arules/man/ruleInduction.Rd | 17 +- arules-1.3-0/arules/man/tidLists-class.Rd | 1 arules-1.3-0/arules/man/transactions-class.Rd | 26 +++- arules-1.3-0/arules/man/write.Rd | 16 -- arules-1.3-0/arules/src/ptree.c | 14 +- arules-1.3-0/arules/src/rapriori.c | 32 ++--- arules-1.3-0/arules/src/reclat.c | 6 arules-1.3-0/arules/src/warm.c | 1 arules-1.3-0/arules/tests/testthat |only arules-1.3-0/arules/tests/testthat.R | 4 64 files changed, 534 insertions(+), 358 deletions(-)