Wed, 18 Nov 2015

Package Libra updated to version 1.4 with previous version 1.3-2 dated 2015-11-09

Title: Linearized Bregman Algorithms for Generalized Linear Models
Description: Efficient procedures for fitting the regularization path for linear, binomial, multinomial, Ising and Potts models with lasso, group lasso or column lasso(only for multinomial) penalty. The package uses Linearized Bregman Algorithm to solve the regularization path through iterations. Bregman Inverse Scale Space Differential Inclusion solver is also provided for linear model with lasso penalty.
Author: Feng Ruan, Jiechao Xiong and Yuan Yao
Maintainer: Jiechao Xiong <xiongjiechao@pku.edu.cn>

Diff between Libra versions 1.3-2 dated 2015-11-09 and 1.4 dated 2015-11-18

 DESCRIPTION           |   18 ++-
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 src/LBheader.c        |  157 +++++++++++++++++++++++---------
 src/LBheader.h        |    9 +
 src/LBlogistic.c      |  163 ++++++++++++++++++++++------------
 src/LBmultilogistic.c |  210 +++++++++++++++++++++++++++++++++----------
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 26 files changed, 838 insertions(+), 518 deletions(-)

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Package ecoretriever updated to version 0.2.1 with previous version 0.2 dated 2015-11-13

Title: R Interface to the EcoData Retriever
Description: Provides an R interface to the EcoData Retriever (http://ecodataretriever.org/) via the EcoData Retriever's command line interface. The EcoData Retriever automates the tasks of finding, downloading, and cleaning ecological datasets, and then stores them in a local database.
Author: Daniel McGlinn [aut, cre], Ethan White [aut]
Maintainer: Daniel McGlinn <danmcglinn@gmail.com>

Diff between ecoretriever versions 0.2 dated 2015-11-13 and 0.2.1 dated 2015-11-18

 DESCRIPTION      |    8 ++++----
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 3 files changed, 16 insertions(+), 11 deletions(-)

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New package EurosarcBayes with initial version 1.0
Package: EurosarcBayes
Type: Package
Title: Bayesian Single Arm Sample Size Calculation Software
Version: 1.0
Date: 2015-11-18
Author: Peter Dutton
Maintainer: Peter Dutton <dutton.peter@gmail.com>
Description: Frequentist and Bayesian single arm trial design and sample size software. Designs cover one and two binary endpoints with both single and multi-stage methodology. The research leading to these results has received funding from the European Union Seventh Framework Programme (FP7/2007-2013) under grant agreement number 278742 (Eurosarc).
License: GPL-2
Depends: shiny, VGAM, data.table, plyr, methods, clinfun
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2015-11-18 15:07:25 UTC; pdutton
Repository: CRAN
Date/Publication: 2015-11-18 18:34:27

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Package BDgraph updated to version 2.24 with previous version 2.23 dated 2015-09-30

Title: Bayesian Graph Selection Based on Birth-Death MCMC Approach
Description: Provides statistical tools for Bayesian structure learning in undirected graphical models with either continuous or discrete variables.
Author: Abdolreza Mohammadi and Ernst Wit
Maintainer: Abdolreza Mohammadi <a.mohammadi@rug.nl>

Diff between BDgraph versions 2.23 dated 2015-09-30 and 2.24 dated 2015-11-18

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 56 files changed, 1661 insertions(+), 1163 deletions(-)

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Package tnet updated to version 3.0.14 with previous version 3.0.11 dated 2012-11-20

Title: Software for Analysis of Weighted, Two-Mode, and Longitudinal Networks
Description: R package for analyzing weighted, two-mode, and longitudinal networks.
Author: Tore Opsahl
Maintainer: Tore Opsahl <tore@opsahl.co.uk>

Diff between tnet versions 3.0.11 dated 2012-11-20 and 3.0.14 dated 2015-11-18

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 14 files changed, 93 insertions(+), 86 deletions(-)

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Package openssl updated to version 0.6 with previous version 0.5 dated 2015-11-15

Title: Toolkit for Encryption, Signatures and Certificates Based on OpenSSL
Description: Bindings to OpenSSL libssl and libcrypto, plus custom SSH pubkey parsers. Supports RSA, DSA and NIST curves P-256, P-384 and P-521. Cryptographic signatures can either be created and verified manually or via x509 certificates. AES block cipher is used in CBC mode for symmetric encryption; RSA for asymmetric (public key) encryption. High-level envelope functions combine RSA and AES for encrypting arbitrary sized data. Other utilities include key generators, hash functions (md5, sha1, sha256, etc), base64 encoder, a secure random number generator, and 'bignum' math methods for manually performing crypto calculations on large multibyte integers.
Author: Jeroen Ooms [cre, aut], Oliver Keyes [ctb]
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>

Diff between openssl versions 0.5 dated 2015-11-15 and 0.6 dated 2015-11-18

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 openssl-0.6/openssl/R/cert.R                     |   12 
 openssl-0.6/openssl/R/hash.R                     |    5 
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 32 files changed, 337 insertions(+), 533 deletions(-)

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Package MALDIquant updated to version 1.14 with previous version 1.13 dated 2015-09-16

Title: Quantitative Analysis of Mass Spectrometry Data
Description: A complete analysis pipeline for matrix-assisted laser desorption/ionization-time-of-flight (MALDI-TOF) and other two-dimensional mass spectrometry data. In addition to commonly used plotting and processing methods it includes distinctive features, namely baseline subtraction methods such as morphological filters (TopHat) or the statistics-sensitive non-linear iterative peak-clipping algorithm (SNIP), peak alignment using warping functions, handling of replicated measurements as well as allowing spectra with different resolutions.
Author: Sebastian Gibb [aut, cre], Korbinian Strimmer [ths]
Maintainer: Sebastian Gibb <mail@sebastiangibb.de>

Diff between MALDIquant versions 1.13 dated 2015-09-16 and 1.14 dated 2015-11-18

 DESCRIPTION                                     |   10 ++++----
 MD5                                             |   30 ++++++++++++------------
 NAMESPACE                                       |    1 
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 R/Deprecated.R                                  |   11 --------
 R/as.matrix-functions.R                         |    3 +-
 R/averageMassSpectra-functions.R                |    2 -
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 R/determineWarpingFunctions-functions.R         |    2 -
 build/vignette.rds                              |binary
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 tests/testthat/test_intensityMatrix-functions.R |    2 -
 16 files changed, 63 insertions(+), 47 deletions(-)

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New package jvnVaR with initial version 1.0
Package: jvnVaR
Type: Package
Title: Value at Risk
Version: 1.0
Date: 2015-11-17
Author: Hung Vu
Maintainer: Hung Vu <viet-hung.vu@jvn.edu.vn>
Description: Many method to compute, predict and back-test VaR. For more detail, see the report: Value at Risk <researchgate.net>.
License: GPL-3
Depends: R(>= 2.10.0), stats, utils
Repository: CRAN
Packaged: 2015-11-18 11:37:09 UTC; Vu
NeedsCompilation: no
Date/Publication: 2015-11-18 15:48:49

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New package GFD with initial version 0.1.2
Package: GFD
Type: Package
Title: Tests for General Factorial Designs
Version: 0.1.2
Date: 2015-11-18
Author: Sarah Friedrich, Frank Konietschke, Markus Pauly
Maintainer: Sarah Friedrich <sarah.friedrich@uni-ulm.de>
Depends: R (>= 3.2.2), RGtk2 (>= 2.20.31)
Description: Implemented are the Wald-type statistic, a permuted version thereof as well as the ANOVA-type statistic for general factorial designs, even with non-normal error terms and/or heteroscedastic variances, for crossed designs with an arbitrary number of factors and nested designs with up to three factors.
License: GPL-2 | GPL-3
Imports: plyr (>= 1.8.3), MASS (>= 7.3-43), Matrix (>= 1.2-2), magic (>= 1.5-6), plotrix (>= 3.5-12)
LazyData: TRUE
Suggests: HSAUR
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2015-11-18 14:41:00 UTC; sarah
Repository: CRAN
Date/Publication: 2015-11-18 16:27:43

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Package Fgmutils updated to version 0.4 with previous version 0.3 dated 2015-11-03

Title: Forest Growth Model Utilities
Description: Growth models and forest production require existing data manipulation and the creation of new data, structured from basic forest inventory data. The purpose of this package is provide functions to support these activities.
Author: Clayton Vieira Fraga, Ana Paula Simiqueli, Wagner Amorim da Silva Altoe
Maintainer: Clayton Vieira Fraga <altoe.wagner@gmail.com>

Diff between Fgmutils versions 0.3 dated 2015-11-03 and 0.4 dated 2015-11-18

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Package catenary updated to version 1.1.1 with previous version 1.1 dated 2013-02-17

Title: Fits a Catenary to Given Points
Description: Gives methods to create a catenary object and then plot it and get properties of it. Can construct from parameters or endpoints. Also can get catenary fitted to data.
Author: Jonathan Tuke [aut, cre], Matthew Roughan [aut]
Maintainer: Jonathan Tuke <simon.tuke@adelaide.edu.au>

Diff between catenary versions 1.1 dated 2013-02-17 and 1.1.1 dated 2015-11-18

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Package cartography updated to version 1.1 with previous version 1.0 dated 2015-10-06

Title: Thematic Cartography
Description: Create and integrate maps in your R workflow. This package allows various cartographic representations: proportional symbols, chroropleth, typology, flows, discontinuities... It also proposes some additional useful features: cartographic palettes, layout (scale, north arrow, title...), labels, legends, access to cartographic API...
Author: Timothée Giraud [cre, aut], Nicolas Lambert [aut]
Maintainer: Timothée Giraud <timothee.giraud@ums-riate.fr>

Diff between cartography versions 1.0 dated 2015-10-06 and 1.1 dated 2015-11-18

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Package apaStyle updated to version 0.2 with previous version 0.1 dated 2015-10-23

Title: Generate APA Tables for MS Word
Description: Most psychological journals require that tables in a manuscript comply to APA (American Association of Psychology) standards. Creating APA tables manually is often time consuming and prone to transcription errors. This package generates tables for MS Word ('.docx' extension) in APA format automatically with just a few lines of code.
Author: Jort de Vreeze [aut, cre]
Maintainer: Jort de Vreeze <j.devreeze@iwm-tuebingen.de>

Diff between apaStyle versions 0.1 dated 2015-10-23 and 0.2 dated 2015-11-18

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Permanent link

Package Zelig updated to version 5.0-8 with previous version 5.0-7 dated 2015-11-10

Title: Everyone's Statistical Software
Description: A framework that brings together an abundance of common statistical models found across packages into a unified interface, and provides a common architecture for estimation and interpretation, as well as bridging functions to absorb increasingly more models into the collective library. Zelig allows each individual package, for each statistical model, to be accessed by a common uniformly structured call and set of arguments. Moreover, Zelig automates all the surrounding building blocks of a statistical workflow --procedures and algorithms that may be essential to one user's application but which the original package developer did not use in their own research and might not themselves support. These include bootstrapping, jackknifing, and reweighting of data. In particular, Zelig automatically generates predicted and simulated quantities of interest (such as relative risk ratios, average treatment effects, first differences and predicted and expected values) to interpret and visualize complex models.
Author: Christine Choirat, James Honaker, Kosuke Imai, Gary King, Olivia Lau
Maintainer: James Honaker <zelig-zee@iq.harvard.edu>

Diff between Zelig versions 5.0-7 dated 2015-11-10 and 5.0-8 dated 2015-11-18

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Package vdmR updated to version 0.2.0 with previous version 0.1.1 dated 2015-06-07

Title: Visual Data Mining Tools for R
Description: This provides web-based visual data-mining tools by adding interactive functions to 'ggplot2' graphics. Brushing and linking between the multiple plots is one of the main feature of this package. Currently scatter plots, histograms, parallel coordinate plots and choropleth maps are supported.
Author: Tomokazu Fujino
Maintainer: Tomokazu Fujino <fujino@fwu.ac.jp>

Diff between vdmR versions 0.1.1 dated 2015-06-07 and 0.2.0 dated 2015-11-18

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Package Traitspace updated to version 1.1 with previous version 1.0 dated 2015-07-07

Title: A Predictive Model for Trait Based Community Assembly of Plant Species
Description: Implements a predictive model of community assembly called 'Traitspace' (Laughlin et al. 2012, Ecology Letters). Traitspace is a hierarchical Bayesian model that translates the theory of trait-based environmental filtering into a statistical model that incorporates intraspecific trait variation to predict the relative abundances and the distributions of species. The package includes functions to plot the predicted and the observed values. It also includes functions to compare the predicted values against the observed values using a variety of different distance measures and to implement permutation tests to test their statistical significance.
Author: Chaitanya Joshi, Xin Li, Daniel Laughlin
Maintainer: Chaitanya Joshi <cjoshi@waikato.ac.nz>

Diff between Traitspace versions 1.0 dated 2015-07-07 and 1.1 dated 2015-11-18

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Package SoyNAM updated to version 1.2 with previous version 1.1 dated 2015-10-15

Title: Soybean Nested Association Mapping Dataset
Description: Genomic and multi-environmental soybean data. Soybean Nested Association Mapping (SoyNAM) project dataset funded by the United Soybean Board (USB), pre-formatted for general analysis and genome-wide association analysis using the NAM package.
Author: Alencar Xavier, William Beavis, James Specht, Brian Diers, Reka Howard, William Muir, Katy Rainey.
Maintainer: Alencar Xavier <xaviera@purdue.edu>

Diff between SoyNAM versions 1.1 dated 2015-10-15 and 1.2 dated 2015-11-18

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Package rSPACE updated to version 1.2.0 with previous version 1.1.1 dated 2015-04-08

Title: Spatially-Explicit Power Analysis for Conservation and Ecology
Description: Conducts a spatially-explicit, simulation-based power analysis for detecting trends in population abundance through occupancy-based modeling. Applicable for evaluating monitoring designs in conservation and ecological settings.
Author: Martha Ellis, Jake Ivan, Jody Tucker, Mike Schwartz
Maintainer: Martha Ellis <martha.ellis@gmail.com>

Diff between rSPACE versions 1.1.1 dated 2015-04-08 and 1.2.0 dated 2015-11-18

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Package rARPACK updated to version 0.9-0 with previous version 0.8-1 dated 2015-10-31

Title: Solvers for Large Scale Eigenvalue and SVD Problems
Description: An R wrapper of the 'ARPACK' library <http://www.caam.rice.edu/software/ARPACK/> to solve large scale eigenvalue/vector problems. It is typically used to compute a few eigenvalues/vectors of an n by n matrix, e.g., the k largest eigenvalues, which is usually more efficient than eigen() if k << n. This package provides the 'eigs()' function which does the similar job as in 'Matlab', 'Octave', 'Python SciPy' and 'Julia'. It also provides the 'svds()' function to calculate the largest k singular values and corresponding singular vectors of a real matrix. Matrices can be given in either dense or sparse form.
Author: Yixuan Qiu, Jiali Mei and authors of the ARPACK library. See file AUTHORS for details.
Maintainer: Yixuan Qiu <yixuan.qiu@cos.name>

Diff between rARPACK versions 0.8-1 dated 2015-10-31 and 0.9-0 dated 2015-11-18

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Package rapport updated to version 1.0 with previous version 0.51 dated 2013-05-08

Title: A Report Templating System
Description: Facilitating the creation of reproducible statistical report templates. Once created, rapport templates can be exported to various external formats (HTML, LaTeX, PDF, ODT etc.) with pandoc as the converter backend.
Author: Aleksandar Blagotić <alex@rapporter.net> and Gergely Daróczi <daroczig@rapporter.net>
Maintainer: Gergely Daróczi <daroczig@rapporter.net>

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Package PSCBS updated to version 0.60.0 with previous version 0.50.0 dated 2015-10-15

Title: Analysis of Parent-Specific DNA Copy Numbers
Description: Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumor-only analyses are supported.
Author: Henrik Bengtsson [aut, cre, cph], Pierre Neuvial [aut], Venkatraman E. Seshan [aut], Adam B. Olshen [aut], Paul T. Spellman [aut], Richard A. Olshen [aut]
Maintainer: Henrik Bengtsson <henrikb@braju.com>

Diff between PSCBS versions 0.50.0 dated 2015-10-15 and 0.60.0 dated 2015-11-18

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Package ParamHelpers updated to version 1.6 with previous version 1.5 dated 2015-02-03

Title: Helpers for Parameters in Black-Box Optimization, Tuning and Machine Learning
Description: Functions for parameter descriptions and operations in black-box optimization, tuning and machine learning. Parameters can be described (type, constraints, defaults, etc.), combined to parameter sets and can in general be programmed on. A useful OptPath object (archive) to log function evaluations is also provided.
Author: Bernd Bischl [aut, cre], Michel Lang [aut], Jakob Bossek [aut], Daniel Horn [aut], Karin Schork [aut]
Maintainer: Bernd Bischl <bernd_bischl@gmx.net>

Diff between ParamHelpers versions 1.5 dated 2015-02-03 and 1.6 dated 2015-11-18

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More information about ParamHelpers at CRAN
Permanent link

New package pAnalysis with initial version 1.0
Package: pAnalysis
Type: Package
Title: Benchmarking and Rescaling R2 using Noise Percentile Analysis
Version: 1.0
Date: 2015-10-26
Author: Joseph G Kreke, PhD; Harris, Inc. Sangeet Khemlani, PhD; Naval Research Laboratory. Greg Trafton, PhD; Naval Research Laboratory.
Maintainer: Joseph G Kreke <jkreke2@gmail.com>
Description: Provides the tools needed to benchmark the R2 value corresponding to a certain acceptable noise level while also providing a rescaling function based on that noise level yielding a new value of R2 we refer to as R2k which is independent of both the number of degrees of freedom and the noise distribution function.
Depends: ggplot2, coin, grDevices, graphics, stats
License: GPL-2
NeedsCompilation: no
Packaged: 2015-11-17 15:52:45 UTC; kreke
Repository: CRAN
Date/Publication: 2015-11-18 09:31:38

More information about pAnalysis at CRAN
Permanent link

Package ndl updated to version 0.2.17 with previous version 0.2.16 dated 2014-02-27

Title: Naive Discriminative Learning
Description: Naive discriminative learning implements learning and classification models based on the Rescorla-Wagner equations and their equilibrium equations.
Author: Antti Arppe [aut], Peter Hendrix [aut], Petar Milin [aut], R. Harald Baayen [aut], Tino Sering [aut, cre], Cyrus Shaoul [aut]
Maintainer: Tino Sering <konstantin.sering@uni-tuebingen.de>

Diff between ndl versions 0.2.16 dated 2014-02-27 and 0.2.17 dated 2015-11-18

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Package NanoStringNorm updated to version 1.1.21 with previous version 1.1.19 dated 2015-03-20

Title: Normalize NanoString miRNA and mRNA Data
Description: A set of tools for normalizing, diagnostics and visualization of NanoString nCounter data.
Author: Daryl M. Waggott
Maintainer: Paul Boutros <Paul.Boutros@oicr.on.ca>

Diff between NanoStringNorm versions 1.1.19 dated 2015-03-20 and 1.1.21 dated 2015-11-18

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Package msm updated to version 1.6 with previous version 1.5 dated 2015-01-06

Title: Multi-State Markov and Hidden Markov Models in Continuous Time
Description: Functions for fitting continuous-time Markov and hidden Markov multi-state models to longitudinal data. Designed for processes observed at arbitrary times in continuous time (panel data) but some other observation schemes are supported. Both Markov transition rates and the hidden Markov output process can be modelled in terms of covariates, which may be constant or piecewise-constant in time.
Author: Christopher Jackson <chris.jackson@mrc-bsu.cam.ac.uk>
Maintainer: Christopher Jackson <chris.jackson@mrc-bsu.cam.ac.uk>

Diff between msm versions 1.5 dated 2015-01-06 and 1.6 dated 2015-11-18

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More information about msm at CRAN
Permanent link

Package mplot updated to version 0.7.7 with previous version 0.7.5 dated 2015-11-16

Title: Graphical Model Stability and Variable Selection Procedures
Description: Model stability and variable inclusion plots [Mueller and Welsh (2010, <doi:10.1111/j.1751-5823.2010.00108.x>); Murray, Heritier and Mueller (2013, <doi:10.1002/sim.5855>)] as well as the adaptive fence [Jiang et al. (2008, <doi:10.1214/07-AOS517>); Jiang et al. (2009, <doi:10.1016/j.spl.2008.10.014>)] for linear and generalised linear models.
Author: Garth Tarr [aut, cre], Samuel Mueller [aut], Alan Welsh [aut]
Maintainer: Garth Tarr <garth.tarr@gmail.com>

Diff between mplot versions 0.7.5 dated 2015-11-16 and 0.7.7 dated 2015-11-18

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New package magclass with initial version 3.74
Package: magclass
Type: Package
Title: Data Class and Tools for Handling Spatial-Temporal Data
Version: 3.74
Date: 2015-11-17
Author: Jan Philipp Dietrich, Benjamin Bodirsky, Misko Stevanovic, Lavinia Baumstark, Christoph Bertram, Markus Bonsch, Anastasis Giannousakis, Florian Humpenoeder, David Klein, Ina Neher, Michaja Pehl, Anselm Schultes
Maintainer: Jan Philipp Dietrich <dietrich@pik-potsdam.de>
Description: Data class for increased interoperability working with spatial-temporal data together with corresponding functions and methods (conversions, basic calculations and basic data manipulation). The class distinguishes between spatial, temporal and other dimensions to facilitate the development and interoperability of tools build for it. Additional features are name-based addressing of data and internal consistency checks (e.g. checking for the right data order in calculations).
Depends: R(>= 2.10.0)
Imports: methods, sp, maptools, abind, ncdf4, reshape2
License: LGPL-3 | file LICENSE
LazyData: no
NeedsCompilation: no
Packaged: 2015-11-17 19:37:42 UTC; dietrich
Repository: CRAN
Date/Publication: 2015-11-18 09:31:27

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Package jomo updated to version 1.2-2 with previous version 1.2-1 dated 2015-10-03

Title: Multilevel Joint Modelling Multiple Imputation
Description: Similarly to Schafer's package pan, jomo is a package for multilevel joint modelling multiple imputation. Novel aspects of jomo are the possibility of handling binary and categorical data through latent normal variables and the option to use cluster-specific covariance matrices.
Author: Matteo Quartagno, James Carpenter
Maintainer: Matteo Quartagno <matteo.quartagno@lshtm.ac.uk>

Diff between jomo versions 1.2-1 dated 2015-10-03 and 1.2-2 dated 2015-11-18

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Package JGEE updated to version 1.1 with previous version 1.0 dated 2015-08-18

Title: Joint Generalized Estimating Equation Solver
Description: Fits two different joint generalized estimating equation models to multivariate longitudinal data.
Author: Gul Inan
Maintainer: Gul Inan <inanx002@umn.edu>

Diff between JGEE versions 1.0 dated 2015-08-18 and 1.1 dated 2015-11-18

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 4 files changed, 40 insertions(+), 16 deletions(-)

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Package hypervolume updated to version 1.4.1 with previous version 1.4 dated 2015-09-24

Title: High-Dimensional Kernel Density Estimation and Geometry Operations
Description: Estimates the shape and volume of high-dimensional datasets and performs set operations: intersection / overlap, union, unique components, inclusion test, and hole detection. Uses stochastic geometry approach to high-dimensional kernel density estimation. Builds n-dimensional convex hulls (polytopes). Can measure the n-dimensional ecological hypervolume and perform species distribution modeling.
Author: Benjamin Blonder
Maintainer: Benjamin Blonder <bblonder@gmail.com>

Diff between hypervolume versions 1.4 dated 2015-09-24 and 1.4.1 dated 2015-11-18

 DESCRIPTION                       |    8 ++++----
 MD5                               |   14 +++++++-------
 R/hypervolume.R                   |    6 +++---
 R/hypervolume_inclusion_test.R    |    4 ++--
 R/hypervolume_plot.R              |    5 ++++-
 R/hypervolume_set.R               |   14 +++++++-------
 man/hypervolume_inclusion_test.Rd |    8 ++++++--
 man/hypervolume_set.Rd            |   12 ++++++++++--
 8 files changed, 43 insertions(+), 28 deletions(-)

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Package eeptools updated to version 0.9.1 with previous version 0.9.0 dated 2015-09-23

Title: Convenience Functions for Education Data
Description: Collection of convenience functions to make working with administrative records easier and more consistent. Includes functions to clean strings, identify cutpoints, and quickly combine shapefiles and dataframes for plotting. Includes four alternative themes for ggplot2. Also includes three example datasets of administrative education records for learning how to process records with errors.
Author: Jason P. Becker [ctb], Jared E. Knowles [aut, cre]
Maintainer: Jared E. Knowles <jknowles@gmail.com>

Diff between eeptools versions 0.9.0 dated 2015-09-23 and 0.9.1 dated 2015-11-18

 DESCRIPTION                    |   15 +++----
 MD5                            |   84 ++++++++++++++++++++---------------------
 NAMESPACE                      |    4 -
 NEWS.md                        |   10 ++++
 R/autoplot.lm.R                |   14 +++---
 R/eeptools.R                   |    2 
 R/mapfunctions.R               |   22 +++++-----
 R/max_mis.R                    |   11 +++--
 R/theme_dpi.R                  |    4 -
 inst/doc/intro.html            |   13 +++---
 man/age_calc.Rd                |   14 +++---
 man/autoplot.lm.Rd             |    7 +--
 man/cleanTex.Rd                |    8 +--
 man/crosstabplot.Rd            |   12 ++---
 man/crosstabs.Rd               |    8 +--
 man/cutoff.Rd                  |   13 +++---
 man/decomma.Rd                 |    9 ++--
 man/defac.Rd                   |    7 +--
 man/eeptools.Rd                |   10 ++--
 man/gelmansim.Rd               |   12 ++---
 man/ggmapmerge.Rd              |    8 +--
 man/lag_data.Rd                |    9 ++--
 man/leading_zero.Rd            |   14 +++---
 man/makenum.Rd                 |   15 +++----
 man/mapmerge.Rd                |   10 ++--
 man/max_mis.Rd                 |   11 ++---
 man/midsch.Rd                  |   14 +++---
 man/moves_calc.Rd              |   35 ++++++++---------
 man/nth_max.Rd                 |    6 ++
 man/profpoly.Rd                |    4 -
 man/profpoly.data.Rd           |    4 -
 man/remove_char.Rd             |   12 ++---
 man/retained_calc.Rd           |   16 +++----
 man/statamode.Rd               |   24 +++++------
 man/stuatt.Rd                  |   10 ++--
 man/stulevel.Rd                |   10 ++--
 man/theme_dpi.Rd               |    6 +-
 man/theme_dpi_map.Rd           |   10 ++--
 man/theme_dpi_map2.Rd          |   12 ++---
 man/theme_dpi_mapPNG.Rd        |   12 ++---
 man/thresh.Rd                  |   12 ++---
 tests/testthat/test-maptools.R |    2 
 tests/testthat/test-utils.R    |    6 +-
 43 files changed, 282 insertions(+), 259 deletions(-)

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Package ConConPiWiFun updated to version 0.4.6 with previous version 0.4.4 dated 2014-10-02

Title: Optimisation with Continuous Convex Piecewise (Linear and Quadratic) Functions
Description: Continuous convex piecewise linear (ccpl) resp. quadratic (ccpq) functions can be implemented with sorted breakpoints and slopes. This includes functions that are ccpl (resp. ccpq) on a convex set (i.e. an interval or a point) and infinite out of the domain. These functions can be very useful for a large class of optimisation problems. Efficient manipulation (such as log(N) insertion) of such data structure is obtained with map standard template library of C++ (that hides balanced trees). This package is a wrapper on such a class based on Rcpp modules.
Author: Robin Girard
Maintainer: Robin Girard <robin.girard@mines-paristech.fr>

Diff between ConConPiWiFun versions 0.4.4 dated 2014-10-02 and 0.4.6 dated 2015-11-18

 ConConPiWiFun-0.4.4/ConConPiWiFun/R/test                                 |only
 ConConPiWiFun-0.4.6/ConConPiWiFun/DESCRIPTION                            |    6 
 ConConPiWiFun-0.4.6/ConConPiWiFun/MD5                                    |   30 -
 ConConPiWiFun-0.4.6/ConConPiWiFun/NAMESPACE                              |    1 
 ConConPiWiFun-0.4.6/ConConPiWiFun/R/OptimStorage.R                       |only
 ConConPiWiFun-0.4.6/ConConPiWiFun/inst/include/convex_function_manip.hpp |    9 
 ConConPiWiFun-0.4.6/ConConPiWiFun/inst/include/cplfunction.hpp           |    6 
 ConConPiWiFun-0.4.6/ConConPiWiFun/inst/include/cplfunctionvec.hpp        |  151 +++++++++-
 ConConPiWiFun-0.4.6/ConConPiWiFun/inst/include/cpqfunction.hpp           |   21 +
 ConConPiWiFun-0.4.6/ConConPiWiFun/inst/include/cpqfunctionvec.hpp        |  124 ++++++++
 ConConPiWiFun-0.4.6/ConConPiWiFun/man/OptimPriceStorage.Rd               |only
 ConConPiWiFun-0.4.6/ConConPiWiFun/man/cplfunctionvec.Rd                  |    9 
 ConConPiWiFun-0.4.6/ConConPiWiFun/src/Makevars                           |    5 
 ConConPiWiFun-0.4.6/ConConPiWiFun/src/Makevars.win                       |    7 
 ConConPiWiFun-0.4.6/ConConPiWiFun/src/Modules.cc                         |   15 
 15 files changed, 331 insertions(+), 53 deletions(-)

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