Sat, 21 Nov 2015

Package scholar updated to version 0.1.4 with previous version 0.1.3 dated 2015-09-28

Title: Analyse Citation Data from Google Scholar
Description: Provides functions to extract citation data from Google Scholar. Convenience functions are also provided for comparing multiple scholars and predicting future h-index values.
Author: James Keirstead <james.keirstead@gmail.com>
Maintainer: James Keirstead <james.keirstead@gmail.com>

Diff between scholar versions 0.1.3 dated 2015-09-28 and 0.1.4 dated 2015-11-21

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Package wombsoft (with last version 2.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2007-08-02 2.0
2007-03-06 1.0-1

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New package imPois with initial version 0.0.6.4
Package: imPois
Title: Imprecise Inferential Framework for Poisson Sampling Models
Version: 0.0.6.4
Date: 2015-11-21
Authors@R: c(person(given="Chel Hee", family="Lee", email="chl948@mail.usask.ca", role=c("aut", "cre", "cph")), person(given="Mikelis", family="Bickis", role=c("aut", "ths", "cph"), email="bickis@snoopy.usask.ca"))
Author: Chel Hee Lee [aut, cre, cph], Mikelis Bickis [aut, ths, cph]
Maintainer: Chel Hee Lee <chl948@mail.usask.ca>
Contact: Chel Hee Lee <gnustats@gmail.com>
Description: A collection of tools needed for conducting imprecise inferential framework is provided. Poisson sampling model and zero-truncated Poisson sampling models are mainly studied as the part of larger project, Imprecise Probability Estimates for Generalized Linear Model. Imprecise probability theory introduced by Peter Wally in 1991 is the basis of this inference.
Depends: R (>= 2.7.0)
Imports: geometry, grDevices, stats, utils
License: GPL (>= 2)
LazyData: true
Type: Package
URL: http://r-forge.r-project.org/projects/ipeglim/
BugReports: Chel Hee Lee <chl948@mail.usask.ca>
NeedsCompilation: no
Packaged: 2015-11-21 16:14:29 UTC; chel
Repository: CRAN
Date/Publication: 2015-11-21 18:09:16

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Package iFes (with last version 1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-12-09 1.0

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Package RCA (with last version 1.4.5) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-08-18 1.4.5

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Package CARramps (with last version 0.1.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2011-12-02 0.1.2

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Package ETAS (with last version 0.0-1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-06-25 0.0-1

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Package WideLM (with last version 0.1-1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-02-17 0.1-1

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Package permGPU (with last version 0.14.6) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-07-19 0.14.6
2014-06-28 0.14.5
2014-06-20 0.14.4
2012-12-27 0.14.3

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Package Dowd (with last version 0.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2015-09-01 0.1

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Package bigrf (with last version 0.1-11) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-05-16 0.1-11
2013-06-29 0.1-6
2013-04-12 0.1-5
2013-03-05 0.1-4
2013-02-18 0.1-3
2013-02-15 0.1-1

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Package rpud (with last version 0.0.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2010-09-15 0.0.2

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Package rJavax (with last version 0.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2011-08-30 0.3
2011-08-23 0.2
2011-08-08 0.1

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New package urlshorteneR with initial version 0.8.8
Package: urlshorteneR
Type: Package
Title: R Wrapper for the Bit.ly, Goo.gl and Is.gd URL Shortening Services
Description: Allows using different URL shortening services, which also provide expanding and analytic functions. Specifically developed for Bit.ly, Goo.gl (both OAUTH2) and is.gd (no API Key). Other can be added by request.
Version: 0.8.8
Date: 2015-11-23
Authors@R: c( person("John", "Malc", email = "cincenko@outlook.com", role = c("aut", "cre"), comment = "@dmpe") )
Depends: R (>= 3.2.2)
Imports: httr (>= 1.0.0), jsonlite (>= 0.9.17), stringr (>= 1.0.0)
Suggests: roxygen2 (>= 5.0.1), knitr (>= 1.11), testthat (>= 0.11.0)
VignetteBuilder: knitr
License: Apache License 2.0
URL: https://github.com/dmpe/urlshorteneR
BugReports: https://github.com/dmpe/urlshorteneR/issues
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2015-11-21 14:06:43 UTC; jm
Author: John Malc [aut, cre] (@dmpe)
Maintainer: John Malc <cincenko@outlook.com>
Repository: CRAN
Date/Publication: 2015-11-21 15:56:34

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Package Surrogate updated to version 0.1-64 with previous version 0.1-63 dated 2015-10-09

Title: Evaluation of Surrogate Endpoints in Clinical Trials
Description: In a clinical trial, it frequently occurs that the most credible outcome to evaluate the effectiveness of a new therapy (the true endpoint) is difficult to measure. In such a situation, it can be an effective strategy to replace the true endpoint by a biomarker that is easier to measure and that allows for a prediction of the treatment effect on the true endpoint (a surrogate endpoint). The package 'Surrogate' allows for an evaluation of the appropriateness of a candidate surrogate endpoint based on the meta-analytic, information-theoretic, and causal-inference frameworks. Part of this software has been developed using funding provided from the European Union's 7th Framework Programme for research, technological development and demonstration under Grant Agreement no 602552.
Author: Wim Van der Elst, Ariel Alonso & Geert Molenberghs
Maintainer: Wim Van der Elst <Wim.vanderelst@gmail.com>

Diff between Surrogate versions 0.1-63 dated 2015-10-09 and 0.1-64 dated 2015-11-21

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Package subscore updated to version 1.2 with previous version 1.1 dated 2015-08-19

Title: SubScore Computing Functions in Classical Test Theory
Description: Functions that compute sub-scores for a test using different methods in classical test theory (CTT).
Author: Shenghai Dai [aut, cre], Xiaolin Wang [aut], Dubravka Svetina [aut]
Maintainer: Shenghai Dai <dais@indiana.edu>

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Package spcadjust updated to version 1.0 with previous version 0.9 dated 2015-06-26

Title: Functions for Calibrating Control Charts
Description: Calibration of thresholds of control charts such as CUSUM charts based on past data, taking estimation error into account.
Author: Axel Gandy <a.gandy@imperial.ac.uk> and Jan Terje Kvaloy <jan.t.kvaloy@uis.no>.
Maintainer: Axel Gandy <a.gandy@imperial.ac.uk>

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Package sinaplot updated to version 0.1.3 with previous version 0.1.2 dated 2015-10-03

Title: An Enhanced Chart for Simple and Truthful Representation of Single Observations over Multiple Classes
Description: The sinaplot is a data visualization chart suitable for plotting any single variable in a multiclass dataset. It is an enhanced jitter strip chart, where the width of the jitter is controlled by the density distribution of the data within each class.
Author: Nikos Sidiropoulos [aut, cre], Sina Hadi Sohi [aut], Nicolas Rapin [aut], Frederik Otzen Bagger [aut]
Maintainer: Nikos Sidiropoulos <nikos.sidiro@gmail.com>

Diff between sinaplot versions 0.1.2 dated 2015-10-03 and 0.1.3 dated 2015-11-21

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Package RedditExtractoR updated to version 2.0.1 with previous version 2.0.0 dated 2015-10-25

Title: Reddit Data Extraction Toolkit
Description: Reddit is an online bulletin board and a social networking website where registered users can submit and discuss content. This package uses Reddit API to extract Reddit data using Reddit API. Note that due to the API limitations, the number of comments that can extracted is limited to 500 per thread. The package consists of 4 functions, one for extracting relevant URLs, one for extracting features out of given URLs, one that does both together and one that constructs graphs based on the structure of a thread.
Author: Ivan Rivera <ivan.s.rivera@gmail.com>
Maintainer: Ivan Rivera <ivan.s.rivera@gmail.com>

Diff between RedditExtractoR versions 2.0.0 dated 2015-10-25 and 2.0.1 dated 2015-11-21

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More information about RedditExtractoR at CRAN
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Package gpuR updated to version 1.0.1 with previous version 1.0.0 dated 2015-11-20

Title: GPU Functions for R Objects
Description: Provides GPU enabled functions for R objects in a simple and approachable manner. New gpu* and vcl* classes have been provided to wrap typical R objects (e.g. vector, matrix), in both host and device spaces, to mirror typical R syntax without the need to know OpenCL.
Author: Charles Determan Jr.
Maintainer: Charles Determan Jr. <cdetermanjr@gmail.com>

Diff between gpuR versions 1.0.0 dated 2015-11-20 and 1.0.1 dated 2015-11-21

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Package glcm updated to version 1.4 with previous version 1.2 dated 2015-01-03

Title: Calculate Textures from Grey-Level Co-Occurrence Matrices (GLCMs)
Description: Enables calculation of image textures derived from grey-level co-occurrence matrices (GLCMs). Supports processing images that cannot fit in memory.
Author: Alex Zvoleff [aut, cre]
Maintainer: Alex Zvoleff <azvoleff@conservation.org>

Diff between glcm versions 1.2 dated 2015-01-03 and 1.4 dated 2015-11-21

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Package gfcanalysis updated to version 1.4 with previous version 1.2 dated 2014-09-17

Title: Tools for Working with Hansen et al. Global Forest Change Dataset
Description: The gfcanalysis package supports analyses using the Global Forest Change dataset released by Hansen et al. gfcanalysis was written for the Tropical Ecology Assessment and Monitoring (TEAM) Network (http://www.teamnetwork.org). For additional details on the Global Forest Change dataset, see: Hansen, M. et al. 2013. "High-Resolution Global Maps of 21st-Century Forest Cover Change." Science 342 (15 November): 850-53. The forest change data and more information on the product is available at http://earthenginepartners.appspot.com.
Author: Alex Zvoleff [aut, cre]
Maintainer: Alex Zvoleff <azvoleff@conservation.org>

Diff between gfcanalysis versions 1.2 dated 2014-09-17 and 1.4 dated 2015-11-21

 DESCRIPTION                 |   27 +++++++++++-----------
 MD5                         |   52 ++++++++++++++++++++++----------------------
 NAMESPACE                   |   17 ++++++++++++--
 NEWS                        |    9 +++++++
 R/animate_annual.R          |   34 ++++++++++++++++++++++------
 R/annual_stack.R            |    7 +++--
 R/download_tiles.R          |   24 +++++++++++---------
 R/extract_gfc.R             |   19 +++++++++-------
 R/gfc_stats.R               |   42 +++++++++++++++++++++++++++--------
 R/threshold_gfc.R           |    7 +++++
 README.md                   |    4 +--
 inst/examples/analyze_GFC.R |   27 +++++-----------------
 man/animate_annual.Rd       |   34 ++++++++++++++++------------
 man/annual_stack.Rd         |   19 +++++++++-------
 man/calc_gfc_tiles.Rd       |    9 ++++---
 man/calc_pixel_areas.Rd     |    5 ++--
 man/download_tiles.Rd       |   24 +++++++++++---------
 man/extract_gfc.Rd          |   36 ++++++++++++++++--------------
 man/gen_grid.Rd             |   11 +++++----
 man/gfc_stats.Rd            |   46 +++++++++++++++++++++-----------------
 man/gfc_tiles.Rd            |    7 +++--
 man/plot_gfc.Rd             |   13 +++++------
 man/scale_by_pixel_area.Rd  |   19 ++++++++--------
 man/scale_toar.Rd           |   13 +++++------
 man/test_poly.Rd            |    7 +++--
 man/threshold_gfc.Rd        |   34 ++++++++++++++++------------
 man/utm_zone.Rd             |   13 +++++------
 27 files changed, 327 insertions(+), 232 deletions(-)

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Package frailtypack updated to version 2.8.1 with previous version 2.7.6.1 dated 2015-09-01

Title: General Frailty Models: Shared, Joint and Nested Frailty Models with Prediction
Description: The following several classes of frailty models using a penalized likelihood estimation on the hazard function but also a parametric estimation can be fit using this R package: 1) A shared frailty model (with gamma or log-normal frailty distribution) and Cox proportional hazard model. Clustered and recurrent survival times can be studied. 2) Additive frailty models for proportional hazard models with two correlated random effects (intercept random effect with random slope). 3) Nested frailty models for hierarchically clustered data (with 2 levels of clustering) by including two iid gamma random effects. 4) Joint frailty models in the context of joint modelling for recurrent events with terminal event for clustered data or not. A joint frailty model for two semi-competing risks and clustered data is also proposed. 5) Joint general frailty models in the context of a joint modelling for recurrent events with terminal event data with two independent frailty terms. 6) Multivariate joint frailty models for two types of recurrent events and a terminal event. 7) Joint models for longitudinal data and a terminal event. 8) Trivariate joint models for longitudinal data, recurrent events and a terminal event. Prediction values are available. Left-truncated (not for Joint model), right-censored data, interval-censored data (only for Cox proportional hazard and shared frailty model) and strata are allowed. In each model, the random effects have the gamma or normal distribution. Now, you can also consider time-varying covariates effects in Cox, shared and joint frailty models (1-5). The package includes concordance measures for Cox proportional hazards models and for shared frailty models.
Author: Virginie Rondeau, Juan R. Gonzalez, Yassin Mazroui, Audrey Mauguen, Agnieszka Krol, Amadou Diakite and Alexandre Laurent
Maintainer: Virginie Rondeau <Virginie.Rondeau@isped.u-bordeaux2.fr>

Diff between frailtypack versions 2.7.6.1 dated 2015-09-01 and 2.8.1 dated 2015-11-21

 DESCRIPTION                        |   41 
 MD5                                |  169 
 NAMESPACE                          |  128 
 NEWS                               |   17 
 R/Diffepoce.R                      |   66 
 R/additivePenal.R                  |   92 
 R/epoce.R                          |  699 ++-
 R/factor.names.R                   |   45 
 R/frailtyPenal.R                   |  245 +
 R/longiPenal.R                     |only
 R/multivPenal.R                    |  351 +
 R/plot.Diffepoce.R                 |    2 
 R/plot.epoce.R                     |   12 
 R/plot.frailtyPenal.R              |    6 
 R/plot.jointPenal.R                |    6 
 R/plot.longiPenal.R                |only
 R/plot.multivPenal.R               |   10 
 R/plot.nestedPenal.additivePenal.R |  140 
 R/plot.predLongi.R                 |only
 R/plot.trivPenal.R                 |only
 R/prediction.R                     | 1591 +++++---
 R/print.Diffepoce.R                |    4 
 R/print.epoce.R                    |   38 
 R/print.jointPenal.R               |    6 
 R/print.longiPenal.R               |only
 R/print.predLongi.R                |only
 R/print.trivPenal.R                |only
 R/summary.jointPenal.R             |    4 
 R/summary.longiPenal.R             |only
 R/summary.trivPenal.R              |only
 R/trivPenal.R                      |only
 R/waldtest.R                       |   18 
 data/colorectal.rda                |only
 data/colorectalLongi.rda           |only
 man/Diffepoce.Rd                   |   55 
 man/additivePenal.Rd               |   27 
 man/colorectal.Rd                  |only
 man/colorectalLongi.Rd             |only
 man/dataAdditive.Rd                |    2 
 man/dataNested.Rd                  |    4 
 man/epoce.Rd                       |   96 
 man/frailtyPenal.Rd                |   87 
 man/frailtypack-package.Rd         |   52 
 man/longiPenal.Rd                  |only
 man/multivPenal.Rd                 |   29 
 man/num.id.Rd                      |    2 
 man/plot.Diffepoce.Rd              |   15 
 man/plot.epoce.Rd                  |   12 
 man/plot.multivPenal.Rd            |   12 
 man/plot.predFrailty.Rd            |    6 
 man/plot.predJoint.Rd              |    4 
 man/plot.predLongi.Rd              |only
 man/plotAdditive.Rd                |    6 
 man/plotFrailtyPenal.Rd            |    8 
 man/plotJointPenal.Rd              |   26 
 man/plotLongiPenal.Rd              |only
 man/plotNestedPenal.Rd             |    8 
 man/plotTrivPenal.Rd               |only
 man/prediction.Rd                  |  694 ++-
 man/print.multivPenal.Rd           |    2 
 man/print.prediction.Rd            |   69 
 man/printAdditive.Rd               |    2 
 man/printFrailtyPenal.Rd           |    2 
 man/printJointPenal.Rd             |    2 
 man/printLongiPenal.Rd             |only
 man/printNestedPenal.Rd            |    2 
 man/printTrivPenal.Rd              |only
 man/readmission.Rd                 |    2 
 man/summary.multivPenal.Rd         |    2 
 man/summaryAdditive.Rd             |    2 
 man/summaryFrailtyPenal.Rd         |    4 
 man/summaryJointPenal.Rd           |    6 
 man/summaryLongiPenal.Rd           |only
 man/summaryNestedPenal.Rd          |    6 
 man/summaryTrivPenal.Rd            |only
 man/terminal.Rd                    |    2 
 man/timedep.Rd                     |    4 
 man/trivPenal.Rd                   |only
 src/Adonnees.f90                   |   76 
 src/Aparameters.f90                |  164 
 src/Makevars                       |    7 
 src/aaOptim.f90                    |  100 
 src/aaUseFunction.f90              |  596 ++-
 src/afuncpasres.f90                |  395 ++
 src/ahrmsym.f90                    |only
 src/aresidusMartingale.f90         |  526 ++
 src/atestWald.f90                  |    4 
 src/distance.f90                   | 6616 +++++++++++++++++++------------------
 src/epoce_long.f90                 |only
 src/frailtypack.f90                |    1 
 src/funcpaGsplines.f90             |    1 
 src/funcpaMultivWeib.f90           |    1 
 src/funcpajlongisplines.f90        |only
 src/funcpajlongiweib.f90           |only
 src/joint.f90                      |   19 
 src/joint_longi.f90                |only
 src/multiveJoint.f90               |   17 
 src/prediction_biv.f90             |only
 src/prediction_tri.f90             |only
 vignettes                          |only
 100 files changed, 8370 insertions(+), 5095 deletions(-)

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New package FACTMLE with initial version 1.1
Package: FACTMLE
Type: Package
Title: Maximum Likelihood Factor Analysis
Version: 1.1
Date: 2015-11-04
Author: Koulik Khamaru <koulik123@gmail.com>, Rahul Mazumder<rahul.mazumder@gmail.com >
Maintainer: Koulik Khamaru <koulik123@gmail.com>
Description: Perform Maximum Likelihood Factor analysis on a covariance matrix or data matrix.
License: GPL-3
Imports: rARPACK, stats
Suggests: MASS
RoxygenNote: 5.0.0
NeedsCompilation: no
Packaged: 2015-11-20 19:31:47 UTC; Flash
Repository: CRAN
Date/Publication: 2015-11-21 15:56:06

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New package extracat with initial version 1.7-4
Package: extracat
Type: Package
Title: Categorical Data Analysis and Visualization
Version: 1.7-4
Date: 2015-11-21
Author: Alexander Pilhoefer <alexander.pilhoefer@gmail.com>
Maintainer: Alexander Pilhoefer <alexander.pilhoefer@gmail.com>
Description: Categorical Data Analysis and Visualization.
Depends: R (>= 3.1.0)
Suggests: ca, amap, MASS, proto
Imports: grid, colorspace, hexbin, scales, ggplot2, plyr, TSP, methods, data.table, reshape2
LazyLoad: yes
LazyData: yes
License: GPL (>= 2)
NeedsCompilation: yes
Packaged: 2015-11-21 15:40:57 UTC; Alexander
Repository: CRAN
Date/Publication: 2015-11-21 16:49:01

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Package edgar updated to version 1.0.4 with previous version 1.0.3 dated 2015-10-28

Title: Platform for EDGAR Filing Management
Description: EDGAR is the Electronic Data Gathering, Analysis, and Retrieval system which performs automated collection, validation, indexing, acceptance, and forwarding of submissions by companies and others who are required by law to file forms with the U.S. Securities and Exchange Commission (SEC). This package downloads EDGAR quarterly master index, daily master index, filings from SEC.org site and do sentiment analysis of 10-K statements.
Author: Gunratan Lonare <lonare.gunratan@gmail.com>, Bharat Patil <bharatspatil@gmail.com>
Maintainer: Gunratan Lonare <lonare.gunratan@gmail.com>

Diff between edgar versions 1.0.3 dated 2015-10-28 and 1.0.4 dated 2015-11-21

 DESCRIPTION                  |    8 ++++----
 MD5                          |   20 ++++++++++----------
 R/download_filings.R         |   12 ++++++------
 R/download_master_index.R    |    2 +-
 R/get_wordfrquency.R         |    4 ++--
 R/negative_words_histogram.R |    8 ++++----
 R/positive_words_histogram.R |    8 ++++----
 man/DownloadMasterIndex.Rd   |    2 +-
 man/Downloadfilings.Rd       |   16 ++++++++--------
 man/NegWorsdHist.Rd          |   12 ++++++------
 man/PosWorsdHist.Rd          |   12 ++++++------
 11 files changed, 52 insertions(+), 52 deletions(-)

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Package apaTables updated to version 1.0.4 with previous version 1.0.3 dated 2015-08-27

Title: Create American Psychological Association (APA) Style Tables
Description: A common task faced by researchers is the creation of APA style (i.e., American Psychological Association style) tables from statistical output. In R a large number of function calls are often needed to obtain all of the desired information for a single APA style table. As well, the process of manually creating APA style tables in a word processor is prone to transcription errors. This package creates Word files (.doc files) containing APA style tables for several types of analyses. Using this package minimizes transcription errors and reduces the number commands needed by the user.
Author: David Stanley [aut, cre]
Maintainer: David Stanley <dstanley@uoguelph.ca>

Diff between apaTables versions 1.0.3 dated 2015-08-27 and 1.0.4 dated 2015-11-21

 DESCRIPTION             |    8 +++---
 MD5                     |   18 +++++++-------
 R/apaANOVATable1way.R   |    8 +++---
 R/apaANOVATable2way.R   |    4 +--
 R/apaCorrelationTable.R |    2 -
 R/apaDvalueTable.R      |    6 ++--
 R/apaRegressionTable.R  |   59 +++++++++++++++++++++++++++++++++---------------
 R/apaTables.R           |   10 ++++++--
 man/apa.reg.table.Rd    |   31 +++++++++++++++++--------
 man/apaTables.Rd        |    4 +--
 10 files changed, 96 insertions(+), 54 deletions(-)

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