Title: Isotonic Proportional Hazards Model
Description: Nonparametric estimation of an isotonic covariate effect for Cox's partial likelihood.
Author: Yunro Chung [cre], Anastasia Ivanova, Michael G. Hudgens and Jason P. Fine
Maintainer: Yunro Chung <yunro@live.unc.edu>
Diff between isoph versions 0.3 dated 2015-11-17 and 0.4 dated 2015-11-22
DESCRIPTION | 10 ++++---- MD5 | 15 ++++++------ R/isoph.R | 19 +++++++++------ R/isoph.td.R | 57 +++++++++++------------------------------------ R/isoph.ti.R | 61 +++++++++++++-------------------------------------- R/picm.R |only R/print.isoph.R | 4 +-- man/isoph-package.Rd | 6 ++--- man/isoph.Rd | 49 +++++++++++++++++++--------------------- 9 files changed, 82 insertions(+), 139 deletions(-)
Title: A Comprehensive, General Purpose Population Genetics Analysis
Package
Description: Allows the calculation of both genetic diversity partition
statistics, genetic differentiation statistics, and locus informativeness
for ancestry assignment.
It also provides users with various option to calculate
bootstrapped 95\% confidence intervals both across loci,
for pairwise population comparisons, and to plot these results interactively.
Parallel computing capabilities and pairwise results without
bootstrapping are provided.
Weir and Cockerham's 1984 F-statistics are also calculated.
Various plotting features are also provided, as well as Chi-square tests of
genetic heterogeneity are also provided.
Functionality for the calculation of various diversity parameters is
possible for RAD-seq derived SNP data sets containing thousands of marker loci.
A shiny application for the development of microsatellite multiplexes is
also available.
Author: Kevin Keenan <kkeenan02@qub.ac.uk>
Maintainer: Kevin Keenan <kkeenan02@qub.ac.uk>
Diff between diveRsity versions 1.9.73 dated 2014-12-22 and 1.9.89 dated 2015-11-22
DESCRIPTION | 41 MD5 | 88 - NAMESPACE | 68 R/RcppExports.R | 114 - R/arSample.R |only R/basicStats.R |only R/diffCalc.R | 2503 ++++++++++++++-------------- R/diffPlot.R | 741 ++++---- R/divBasic.R | 1244 +++++++------- R/divMigrate.R | 1126 ++++++------ R/divMigrateOnline.R | 455 ++--- R/divMigrateOnline_test.R |only R/divRatio.R | 1269 +++++++------- R/fastDivPart.R | 3725 +++++++++++++++++++++---------------------- R/fstOnly.R | 773 -------- R/gpSampler.R | 24 R/haploDiv.R | 12 R/inCalc.R | 552 +++--- R/plotter.R | 811 ++++----- R/polyIn.R | 349 ++-- R/rarefactor.R |only R/regroup.R |only R/snp2gen.R | 203 -- R/writeBoot.R | 1839 ++++++++++----------- build/vignette.rds |binary data/pop_stats.rda |binary inst/microPlexer/server.R | 768 ++++---- man/allCount.Rd |only man/arSample.Rd |only man/basicStats.Rd |only man/bigDivPart.Rd | 158 - man/bsHetCalc.Rd |only man/chiCalc.Rd | 12 man/diffCalc.Rd | 202 +- man/divBasic.Rd | 6 man/divMigrateOnline.Rd | 4 man/divMigrateOnline_test.Rd |only man/divPart.Rd | 14 man/divRatio.Rd | 12 man/expHet.Rd |only man/fastDivPart.Rd | 14 man/haploDiv.Rd | 4 man/hweTab.Rd |only man/inCalc.Rd | 14 man/obsHet.Rd |only man/polyIn.Rd | 52 man/rarefactor.Rd |only man/regroup.Rd |only man/snp2gen.Rd | 62 src/RcppExports.cpp | 235 +- src/allCount.cpp |only src/bsHetCalc.cpp |only src/expHet.cpp |only src/hweTab.cpp |only src/obsHet.cpp |only 55 files changed, 8414 insertions(+), 9080 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-07-07 1.0
Title: Resource Selection (Probability) Functions for Use-Availability
Data
Description: Resource Selection (Probability) Functions for
use-availability wildlife data as described in
Lele and Keim (2006, Ecology 87, 3021--3028),
and Lele (2009, J. Wildlife Management 73, 122--127).
Author: Subhash R. Lele, Jonah L. Keim, Peter Solymos
Maintainer: Peter Solymos <solymos@ualberta.ca>
Diff between ResourceSelection versions 0.2-4 dated 2014-05-20 and 0.2-5 dated 2015-11-22
DESCRIPTION | 14 - MD5 | 68 ++++---- NAMESPACE | 53 +++--- R/CAIC.R | 6 R/CAIC.default.R | 60 +++---- R/confint.rsf.R | 76 ++++----- R/fitted.rsf.R | 20 +- R/hoslem.test.R | 42 ++--- R/kdepairs.R | 6 R/kdepairs.default.R | 93 +++++------ R/kdepairs.rsf.R | 12 - R/logLik.rsf.R | 18 +- R/makeUsedAvail.R | 4 R/makeUsedAvail.default.R | 30 +-- R/makeUsedAvail.formula.R | 34 ++-- R/model.frame.rsf.R | 12 - R/model.matrix.rsf.R | 18 +- R/plot.rsf.R | 62 +++---- R/predict.rsf.R | 94 ++++++----- R/print.rsf.R | 66 ++++---- R/print.summary.rsf.R | 108 ++++++------- R/rsf.R | 130 ++++++++-------- R/rsf.fit.R | 288 ++++++++++++++++++------------------ R/rspf.R | 128 ++++++++-------- R/summary.rsf.R | 100 ++++++------ R/vcov.rsf.R | 58 +++---- inst/ChangeLog | 129 +++++++++------- man/CAIC.Rd | 160 ++++++++++---------- man/ResourceSelection-package.Rd | 72 ++++----- man/goats.Rd | 112 +++++++------- man/hoslem.test.Rd | 114 +++++++------- man/kdepairs.Rd | 102 ++++++------- man/makeUsedAvail.Rd | 100 ++++++------ man/rsf.Rd | 306 +++++++++++++++++++-------------------- man/simulateUsedAvail.Rd | 92 +++++------ 35 files changed, 1409 insertions(+), 1378 deletions(-)
More information about ResourceSelection at CRAN
Permanent link
Title: Large, Sparse Optimal Matching with Refined Covariate Balance
Description: Tools for large, sparse optimal matching of treated units
and control units in observational studies. Provisions are
made for refined covariate balance constraints, which include
fine and near-fine balance as special cases. Matches are
optimal in the sense that they are computed as solutions to
network optimization problems rather than greedy algorithms.
Author: Samuel D. Pimentel
Maintainer: Samuel D. Pimentel <spi@wharton.upenn.edu>
Diff between rcbalance versions 1.7.4 dated 2015-11-15 and 1.7.5 dated 2015-11-22
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/rcbalance.R | 8 ++++---- man/rcbalance-package.Rd | 2 +- 4 files changed, 12 insertions(+), 12 deletions(-)
Title: Preparing Experimental Data for Statistical Analysis
Description: Prepares data collected in an experimental design for statistical
analysis (e.g., analysis of variance ;ANOVA) by taking the individual data
files and preparing one table that contains several possibilities for
dependent variables. Most suitable when measuring reaction-times and/or
accuracy, or any other variable in an interval or ratio scale. Functions
included: file_merge(), read_data() and prep(). The file_merge() function
vertically merges individual data files (in a long format) in which each line
is a single trial within the experiment to one single dataset. The
read_data() function reads a file in a txt or csv format that contains a
single dataset in a long format table and creates a data frame from it. The
prep() function aggregates the single dataset according to any combination of
between and within grouping variables (i.e., between-subjects and
within-subjects independent variables, respectively), and returns a data
frame with a number of dependent measures for further analysis for each
experimental cell according to the combination of provided grouping
variables. Dependent measures for each experimental cell include among
others means before and after rejecting all values according to a flexible
standard deviation criterion/s, number of rejected values according to the
flexible standard deviation criterion/s, proportions of rejected values
according to the flexible standard deviation criterion/s, number of values
before rejection, means after rejecting values according to procedures
described in Van Selst & Jolicoeur (1994) (suitable when measuring
reaction-times), standard deviations, medians, means according to any
percentile (e.g., 0.05, 0.25, 0.75, 0.95) and harmonic means. The data frame
prep() returns can also be exported as a txt file to be used for statistical
analysis in other statistical programs.
Author: Ayala S. Allon [aut, cre],
Roy Luria [aut],
Jim Grange [ctb],
Nachshon Meiran [ctb]
Maintainer: Ayala S. Allon <ayalaallon@gmail.com>
Diff between prepdat versions 1.0.3 dated 2015-10-22 and 1.0.4 dated 2015-11-22
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 6 ++++++ R/file_merge.R | 14 ++++++++++---- README.md | 2 +- 5 files changed, 24 insertions(+), 12 deletions(-)
Title: Adding Progress Bar to '*apply' Functions
Description: A lightweight package that adds
progress bar to vectorized R functions
('*apply'). The implementation can easily be added
to functions, where showing the progress is
useful for the user (e.g. bootstrap).
Author: Peter Solymos
Maintainer: Peter Solymos <solymos@ualberta.ca>
Diff between pbapply versions 1.1-1 dated 2014-05-16 and 1.1-2 dated 2015-11-22
DESCRIPTION | 11 - MD5 | 39 ++--- NAMESPACE | 14 - R/closepb.R | 10 - R/pbapply.R | 189 +++++++++++++------------- R/pblapply.R | 37 ++--- R/pboptions.R | 32 ++-- R/pbreplicate.R | 9 - R/pbsapply.R | 32 +--- R/unix/dopb.R | 24 +-- R/unix/getpb.R | 24 +-- R/unix/setpb.R | 24 +-- R/unix/startpb.R | 26 +-- R/windows/dopb.R | 24 +-- R/windows/getpb.R | 26 +-- R/windows/setpb.R | 26 +-- R/windows/startpb.R | 30 ++-- inst/ChangeLog | 82 ++++++----- man/pbapply.Rd | 375 ++++++++++++++++++++++++++-------------------------- man/pboptions.Rd | 272 ++++++++++++++++++------------------- tests |only 21 files changed, 670 insertions(+), 636 deletions(-)
Title: Regularized Linear Models
Description: Algorithms for fitting model-based penalized coefficient paths. Currently the models include penalized Poisson, negative binomial, zero-inflated Poisson and zero-inflated negative binomial regression models. The penalties include least absolute shrinkage and selection operator (LASSO), smoothly clipped absolute deviation (SCAD) and minimax concave penalty (MCP), and each possibly combining with L_2 penalty.
Author: Zhu Wang, with contributions from Achim Zeileis, Simon Jackman, Brian Ripley, Trevor Hastie, Rob Tibshirani, Balasubramanian Narasimhan, Gil Chu and Patrick Breheny
Maintainer: Zhu Wang <zwang@connecticutchildrens.org>
Diff between mpath versions 0.1-19 dated 2015-07-23 and 0.1-20 dated 2015-11-22
DESCRIPTION | 6 +++--- MD5 | 42 +++++++++++++++++++++--------------------- NEWS | 6 ++++++ build/vignette.rds |binary inst/doc/german.pdf |binary inst/doc/static_german.pdf |binary man/be_zeroinfl.Rd | 4 ++-- man/breadReg.Rd | 5 +++-- man/cv.zipath.Rd | 4 ++-- man/estfunReg.Rd | 3 +-- man/hessianReg.Rd | 2 +- man/meatReg.Rd | 2 +- man/methods.Rd | 5 ++--- man/p_zipath.Rd | 4 ++-- man/predict.zipath.Rd | 4 ++-- man/rzi.Rd | 4 ++-- man/sandwichReg.Rd | 2 +- man/se.Rd | 2 +- man/tuning_zipath.Rd | 4 ++-- man/zipath.Rd | 6 +++--- src/midloop.f | 2 +- vignettes/mpath.bib | 2 ++ 22 files changed, 58 insertions(+), 51 deletions(-)
Title: Some Additional Multiple Imputation Functions, Especially for
'mice'
Description:
Contains some auxiliary functions for multiple imputation which
complements existing functionality in R.
In addition to some utility functions, main features include
plausible value imputation, multilevel imputation functions,
imputation using partial least squares (PLS) for high dimensional
predictors, nested multiple imputation, and two-way imputation.
Author: Alexander Robitzsch [aut, cre]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between miceadds versions 1.4-0 dated 2015-11-04 and 1.5-0 dated 2015-11-22
DESCRIPTION | 9 MD5 | 52 +-- NAMESPACE | 2 R/save.data.R | 3 data/data.allison.gssexp.rda |binary data/data.allison.hip.rda |binary data/data.allison.usnews.rda |binary data/data.enders.depression.rda |binary data/data.enders.eatingattitudes.rda |binary data/data.enders.employee.rda |binary data/data.graham.ex3.rda |binary data/data.graham.ex6.rda |binary data/data.graham.ex8a.rda |binary data/data.graham.ex8b.rda |binary data/data.graham.ex8c.rda |binary data/data.internet.rda |binary data/data.largescale.rda |binary data/data.ma01.rda |binary data/data.ma02.rda |binary data/data.ma03.rda |binary data/data.ma04.rda |binary data/data.ma05.rda |binary data/data.ma06.rda |binary data/data.smallscale.rda |binary inst/NEWS | 478 +++++++++++++++++------------------ man/miceadds-package.Rd | 2 man/write.pspp.Rd | 2 27 files changed, 276 insertions(+), 272 deletions(-)
Title: Multivariate Data Handling with S4 Classes and Sparse Matrices
Description: An S4 update of the 'mefa' package
using sparse matrices for enhanced efficiency.
Sparse array-like objects are supported via
lists of sparse matrices.
Author: Peter Solymos
Maintainer: Peter Solymos <solymos@ualberta.ca>
Diff between mefa4 versions 0.3-1 dated 2014-05-16 and 0.3-2 dated 2015-11-22
mefa4-0.3-1/mefa4/build |only mefa4-0.3-1/mefa4/inst/doc |only mefa4-0.3-1/mefa4/vignettes |only mefa4-0.3-2/mefa4/DESCRIPTION | 10 mefa4-0.3-2/mefa4/MD5 | 45 +- mefa4-0.3-2/mefa4/NAMESPACE | 38 + mefa4-0.3-2/mefa4/R/mefa4classes.R | 398 ++++++++++---------- mefa4-0.3-2/mefa4/R/mefa4extras.R | 644 ++++++++++++++++----------------- mefa4-0.3-2/mefa4/R/mefa4methods.R | 408 ++++++++++---------- mefa4-0.3-2/mefa4/R/mefa4utilities.R | 208 +++++----- mefa4-0.3-2/mefa4/R/r2rmd.R |only mefa4-0.3-2/mefa4/inst/CITATION | 38 - mefa4-0.3-2/mefa4/inst/ChangeLog | 179 ++++----- mefa4-0.3-2/mefa4/inst/extras |only mefa4-0.3-2/mefa4/inst/r2rmd_example.R |only mefa4-0.3-2/mefa4/man/Mefa.Rd | 306 +++++++-------- mefa4-0.3-2/mefa4/man/Melt.Rd | 92 ++-- mefa4-0.3-2/mefa4/man/Xtab.Rd | 168 ++++---- mefa4-0.3-2/mefa4/man/abmibirds.Rd | 314 ++++++++-------- mefa4-0.3-2/mefa4/man/groupSums.Rd | 206 +++++----- mefa4-0.3-2/mefa4/man/mbind.Rd | 170 ++++---- mefa4-0.3-2/mefa4/man/mefa4-package.Rd | 120 +++--- mefa4-0.3-2/mefa4/man/nameAlnum.Rd | 122 +++--- mefa4-0.3-2/mefa4/man/nonDuplicated.Rd | 104 ++--- mefa4-0.3-2/mefa4/man/r2rmd.Rd |only mefa4-0.3-2/mefa4/man/samp.Rd | 192 ++++----- 26 files changed, 1888 insertions(+), 1874 deletions(-)
Title: Multivariate Data Handling in Ecology and Biogeography
Description: A framework package aimed to provide standardized computational environment for specialist work via object classes to represent the data coded by samples, taxa and segments (i.e. subpopulations, repeated measures). It supports easy processing of the data along with cross tabulation and relational data tables for samples and taxa. An object of class `mefa' is a project specific compendium of the data and can be easily used in further analyses. Methods are provided for extraction, aggregation, conversion, plotting, summary and reporting of `mefa' objects. Reports can be generated in plain text or LaTeX format. Vignette contains worked examples.
Author: Peter Solymos
Maintainer: Peter Solymos <solymos@ualberta.ca>
Diff between mefa versions 3.2-5 dated 2013-12-03 and 3.2-6 dated 2015-11-22
DESCRIPTION | 11 MD5 | 68 +- NAMESPACE | 178 +++---- R/image.dist.R | 60 +- R/label.R | 28 - R/mefadocs.R | 32 - R/qvector.R | 22 R/samp.R | 4 R/samp.default.R | 19 R/segm.R | 4 R/segm.default.R | 20 R/stack.dist.R | 4 R/taxa.R | 4 R/taxa.default.R | 18 R/xtab.R | 4 R/xtab.default.R | 10 build/vignette.rds |binary demo/00Index | 2 inst/CITATION | 38 - inst/ChangeLog | 802 ++++++++++++++++---------------- inst/SampleReport | 80 +-- inst/doc/mefa.R | 732 ++++++++++++++--------------- inst/doc/mefa.Rnw | 1304 ++++++++++++++++++++++++++--------------------------- inst/doc/mefa.pdf |binary man/aoplot.Rd | 92 +-- man/dolina.Rd | 6 man/image.dist.Rd | 84 +-- man/mat2list.Rd | 138 ++--- man/mefadocs.Rd | 50 +- man/mefalogo.Rd | 84 +-- man/mefaweb.Rd | 58 +- man/qvector.Rd | 86 +-- man/stack.dist.Rd | 136 ++--- vignettes/mefa.Rnw | 1304 ++++++++++++++++++++++++++--------------------------- vignettes/mefa.bib | 452 +++++++++--------- 35 files changed, 2976 insertions(+), 2958 deletions(-)
Title: Leveraging Learning to Automatically Manage Algorithms
Description: Provides functionality to train and evaluate algorithm selection models for portfolios.
Author: Lars Kotthoff [aut,cre],
Bernd Bischl [aut],
Barry Hurley [ctb],
Talal Rahwan [ctb]
Maintainer: Lars Kotthoff <larsko@cs.ubc.ca>
Diff between llama versions 0.8.1 dated 2015-02-03 and 0.9 dated 2015-11-22
DESCRIPTION | 14 +- LICENSE | 2 MD5 | 87 +++++++++--------- NAMESPACE | 13 ++ NEWS | 10 ++ R/bsFolds.R | 14 +- R/classify.R | 160 +++++++++++++++++++++------------ R/classifyPairs.R | 165 ++++++++++++++++++++++------------- R/cluster.R | 35 +++---- R/cvFolds.R | 18 ++- R/helpers.R | 14 ++ R/input.R | 4 R/misc.R | 8 - R/misclassificationPenalties.R | 4 R/parscores.R | 4 R/plot.R | 26 ++--- R/regression.R | 31 +++--- R/regressionPairs.R | 37 ++++--- R/successes.R | 4 R/trainTest.R | 10 +- R/tune.R |only R/zzz.R | 2 inst/manual/llama.pdf |binary man/bsFolds.Rd | 12 +- man/classify.Rd | 15 +-- man/classifyPairs.Rd | 8 + man/cluster.Rd | 2 man/cvFolds.Rd | 6 - man/helpers.Rd | 26 +++++ man/llama-package.Rd | 18 +-- man/regression.Rd | 2 man/regressionPairs.Rd | 2 man/trainTest.Rd | 2 man/tune.Rd |only tests/testthat/helper_mockLearners.R | 26 ++++- tests/testthat/helper_testData.R | 11 ++ tests/testthat/test.bsFolds.R | 17 ++- tests/testthat/test.classify.R | 79 ++++++++++++++-- tests/testthat/test.classifyPairs.R | 53 +++++++++-- tests/testthat/test.cluster.R | 12 +- tests/testthat/test.cvFolds.R | 28 +++++ tests/testthat/test.input.R | 10 ++ tests/testthat/test.regression.R | 11 ++ tests/testthat/test.satsolvers.R | 15 +++ tests/testthat/test.trainTest.R | 11 ++ tests/testthat/test.tune.R |only 46 files changed, 709 insertions(+), 319 deletions(-)
Title: Collapsed Gibbs Sampling Methods for Topic Models
Description: Implements latent Dirichlet allocation (LDA)
and related models. This includes (but is not limited
to) sLDA, corrLDA, and the mixed-membership stochastic
blockmodel. Inference for all of these models is
implemented via a fast collapsed Gibbs sampler written
in C. Utility functions for reading/writing data
typically used in topic models, as well as tools for
examining posterior distributions are also included.
Author: Jonathan Chang
Maintainer: Jonathan Chang <slycoder@gmail.com>
Diff between lda versions 1.3.2 dated 2012-10-14 and 1.4.2 dated 2015-11-22
lda-1.3.2/lda/DESCRIPTION.orig |only lda-1.3.2/lda/DESCRIPTION.rej |only lda-1.4.2/lda/DESCRIPTION | 30 lda-1.4.2/lda/MD5 | 79 - lda-1.4.2/lda/NAMESPACE | 1 lda-1.4.2/lda/R/lda-internal.R | 52 - lda-1.4.2/lda/R/lda.cvb0.R |only lda-1.4.2/lda/R/rtm.em.R | 58 - lda-1.4.2/lda/R/slda.em.R | 40 lda-1.4.2/lda/R/slda.predict.R | 2 lda-1.4.2/lda/data/cora.cites.rda |binary lda-1.4.2/lda/data/cora.documents.rda |binary lda-1.4.2/lda/data/cora.titles.rda |binary lda-1.4.2/lda/data/cora.vocab.rda |binary lda-1.4.2/lda/data/datalist |only lda-1.4.2/lda/data/newsgroup.label.map.rda |only lda-1.4.2/lda/data/newsgroup.test.documents.rda |only lda-1.4.2/lda/data/newsgroup.test.labels.rda |only lda-1.4.2/lda/data/newsgroup.train.documents.rda |only lda-1.4.2/lda/data/newsgroup.train.labels.rda |only lda-1.4.2/lda/data/newsgroup.vocab.rda |only lda-1.4.2/lda/data/poliblog.documents.rda |binary lda-1.4.2/lda/data/poliblog.ratings.rda |binary lda-1.4.2/lda/data/poliblog.vocab.rda |binary lda-1.4.2/lda/data/sampson.rda |binary lda-1.4.2/lda/demo/00Index | 1 lda-1.4.2/lda/demo/lda.R | 6 lda-1.4.2/lda/demo/mmsb.R | 26 lda-1.4.2/lda/demo/nubbi.R | 4 lda-1.4.2/lda/demo/slda.R | 2 lda-1.4.2/lda/demo/sldamc.R |only lda-1.4.2/lda/man/filter.words.Rd | 2 lda-1.4.2/lda/man/lda-package.Rd | 2 lda-1.4.2/lda/man/lda.collapsed.gibbs.sampler.Rd | 33 lda-1.4.2/lda/man/lexicalize.Rd | 2 lda-1.4.2/lda/man/links.as.edgelist.Rd | 2 lda-1.4.2/lda/man/newsgroups.Rd |only lda-1.4.2/lda/man/nubbi.collapsed.gibbs.sampler.Rd | 17 lda-1.4.2/lda/man/predictive.distribution.Rd | 2 lda-1.4.2/lda/man/predictive.link.probability.Rd | 2 lda-1.4.2/lda/man/read.documents.Rd | 2 lda-1.4.2/lda/man/rtm.collapsed.gibbs.sampler.Rd | 23 lda-1.4.2/lda/man/slda.predict.Rd | 2 lda-1.4.2/lda/man/top.topic.words.Rd | 2 lda-1.4.2/lda/man/word.counts.Rd | 2 lda-1.4.2/lda/src/cvb0.c |only lda-1.4.2/lda/src/gibbs.c | 1034 +++++++++++---------- 47 files changed, 773 insertions(+), 655 deletions(-)
Title: Analysis of Ecological Data : Exploratory and Euclidean Methods
in Environmental Sciences
Description: Multivariate data analysis and graphical display.
Author: Stéphane Dray <stephane.dray@univ-lyon1.fr>, Anne-Béatrice Dufour <anne-beatrice.dufour@univ-lyon1.fr>, and Jean Thioulouse <jean.thioulouse@univ-lyon1.fr>, with contributions from Thibaut Jombart, Sandrine Pavoine, Jean R. Lobry, Sébastien Ollier, and Aurélie Siberchicot. Based on earlier work by Daniel Chessel.
Maintainer: Aurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Diff between ade4 versions 1.7-2 dated 2015-04-14 and 1.7-3 dated 2015-11-22
ChangeLog | 95 ++++++++++++++++++ DESCRIPTION | 20 +-- MD5 | 258 ++++++++++++++++++++++++------------------------- NAMESPACE | 10 + R/cca.R | 21 +++ R/dudi.R | 4 R/dudi.fca.R | 1 R/ktab.R | 4 R/mbpcaiv.R | 22 +++- R/mbpls.R | 18 +++ R/multiblock.R | 10 + R/pta.R | 17 +-- R/randtest-internal.R | 3 R/randtest.discrimin.R | 2 R/randtest.rlq.R | 4 R/scalewt.R | 22 +++- R/utilities.R | 2 data/abouheif.eg.rda |binary data/acacia.rda |binary data/aminoacyl.rda |binary data/apis108.rda |binary data/aravo.rda |binary data/ardeche.rda |binary data/arrival.rda |binary data/atlas.rda |binary data/atya.rda |binary data/avijons.rda |binary data/avimedi.rda |binary data/aviurba.rda |binary data/bacteria.rda |binary data/banque.rda |binary data/baran95.rda |binary data/bf88.rda |binary data/bordeaux.rda |binary data/bsetal97.rda |binary data/buech.rda |binary data/butterfly.rda |binary data/capitales.rda |binary data/carni19.rda |binary data/carni70.rda |binary data/carniherbi49.rda |binary data/casitas.rda |binary data/chatcat.rda |binary data/chats.rda |binary data/chazeb.rda |binary data/chevaine.rda |binary data/chickenk.rda |binary data/clementines.rda |binary data/cnc2003.rda |binary data/coleo.rda |binary data/corvus.rda |binary data/deug.rda |binary data/doubs.rda |binary data/dunedata.rda |binary data/ecg.rda |binary data/ecomor.rda |binary data/elec88.rda |binary data/escopage.rda |binary data/euro123.rda |binary data/fission.rda |binary data/friday87.rda |binary data/fruits.rda |binary data/ggtortoises.rda |binary data/granulo.rda |binary data/hdpg.rda |binary data/housetasks.rda |binary data/humDNAm.rda |binary data/ichtyo.rda |binary data/irishdata.rda |binary data/julliot.rda |binary data/jv73.rda |binary data/kcponds.rda |binary data/lascaux.rda |binary data/lizards.rda |binary data/macaca.rda |binary data/macon.rda |binary data/macroloire.rda |binary data/mafragh.rda |binary data/maples.rda |binary data/mariages.rda |binary data/meau.rda |binary data/meaudret.rda |binary data/microsatt.rda |binary data/mjrochet.rda |binary data/mollusc.rda |binary data/monde84.rda |binary data/morphosport.rda |binary data/newick.eg.rda |binary data/njplot.rda |binary data/olympic.rda |binary data/oribatid.rda |binary data/ours.rda |binary data/palm.rda |binary data/pap.rda |binary data/pcw.rda |binary data/perthi02.rda |binary data/piosphere.rda |binary data/presid2002.rda |binary data/procella.rda |binary data/rankrock.rda |binary data/rhizobium.rda |binary data/rhone.rda |binary data/rpjdl.rda |binary data/santacatalina.rda |binary data/sarcelles.rda |binary data/seconde.rda |binary data/skulls.rda |binary data/steppe.rda |binary data/syndicats.rda |binary data/t3012.rda |binary data/tarentaise.rda |binary data/taxo.eg.rda |binary data/tintoodiel.rda |binary data/tithonia.rda |binary data/tortues.rda |binary data/toxicity.rda |binary data/trichometeo.rda |binary data/ungulates.rda |binary data/vegtf.rda |binary data/veuvage.rda |binary data/westafrica.rda |binary data/woangers.rda |binary data/worksurv.rda |binary data/yanomama.rda |binary data/zealand.rda |binary man/add.scatter.Rd | 4 man/cca.Rd | 7 + man/scalewt.Rd | 2 src/fourthcorner.c | 6 - src/tests.c | 14 +- 130 files changed, 359 insertions(+), 187 deletions(-)