Title: Graphical User Interface for Data Mining in R
Description: The R Analytic Tool To Learn Easily (Rattle) provides a
Gnome (RGtk2) based interface to R functionality for data mining.
The aim is to provide a simple and intuitive interface
that allows a user to quickly load data from a CSV file
(or via ODBC), transform and explore the data,
build and evaluate models, and export models as PMML (predictive
modelling markup language) or as scores. All of this with knowing little
about R. All R commands are logged and commented through the log tab. Thus they
are available to the user as a script file or as an aide for the user to
learn R or to copy-and-paste directly into R itself.
Rattle also exports a number of utility
functions and the graphical user interface, invoked as rattle(), does
not need to be run to deploy these.
Author: Graham Williams [aut, cph, cre],
Mark Vere Culp [cph],
Ed Cox [ctb],
Anthony Nolan [ctb],
Denis White [cph],
Daniele Medri [ctb],
Akbar Waljee [ctb] (OOB AUC for Random Forest),
Brian Ripley [cph] (Author of original print.summary.nnet),
Jose Magana [ctb] (Contributed the ggpairs plots.)
Maintainer: Graham Williams <Graham.Williams@togaware.com>
Diff between rattle versions 4.0.0 dated 2015-11-05 and 4.0.5 dated 2015-11-24
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- R/appendLibLog.R | 6 +++--- R/data.R | 19 ++++++++++++++++--- R/evaluate.R | 10 +++++----- R/executePairsPlotSelect2.R | 9 +++++++-- R/explore.R | 4 ++-- R/log.R | 4 ++-- R/rattle.R | 4 ++-- R/textminer.R | 4 ++-- inst/doc/rattle.pdf |binary 11 files changed, 53 insertions(+), 35 deletions(-)
Title: Adding Progress Bar to '*apply' Functions
Description: A lightweight package that adds
progress bar to vectorized R functions
('*apply'). The implementation can easily be added
to functions, where showing the progress is
useful for the user (e.g. bootstrap).
Author: Peter Solymos
Maintainer: Peter Solymos <solymos@ualberta.ca>
Diff between pbapply versions 1.1-2 dated 2015-11-22 and 1.1-3 dated 2015-11-24
DESCRIPTION | 9 - MD5 | 42 ++--- NAMESPACE | 14 - R/closepb.R | 10 - R/pbapply.R | 198 +++++++++++++------------- R/pblapply.R | 38 ++--- R/pboptions.R | 32 ++-- R/pbreplicate.R | 8 - R/pbsapply.R | 22 +- R/unix/dopb.R | 24 +-- R/unix/getpb.R | 24 +-- R/unix/setpb.R | 24 +-- R/unix/startpb.R | 26 +-- R/windows/dopb.R | 24 +-- R/windows/getpb.R | 26 +-- R/windows/setpb.R | 26 +-- R/windows/startpb.R | 30 ++-- R/zzz.R | 26 +-- inst/ChangeLog | 108 +++++++------- man/pbapply.Rd | 388 ++++++++++++++++++++++++++-------------------------- man/pboptions.Rd | 274 ++++++++++++++++++------------------ tests/tests.R | 82 +++++----- 22 files changed, 732 insertions(+), 723 deletions(-)
Title: Kernel Smoothing for Bivariate Copula Densities
Description: Provides fast implementations of kernel smoothing techniques for
bivariate copula densities, in particular density estimation and resampling.
Author: Thomas Nagler [aut, cre]
Maintainer: Thomas Nagler <thomas.nagler@tum.de>
Diff between kdecopula versions 0.4.0 dated 2015-10-22 and 0.4.1 dated 2015-11-24
DESCRIPTION | 6 MD5 | 52 +++---- NEWS.md | 10 + R/RcppExports.R | 28 ++-- R/dprhkdecop.R | 2 R/eval_tt.R | 27 ---- R/generics.R | 2 R/helpers.R | 243 ++++++++++++++++++------------------- R/kdecop.R | 13 + R/plot.kdecopula.R | 2 README.md | 8 - inst/README-unnamed-chunk-12-1.png |binary inst/README-unnamed-chunk-6-1.png |binary inst/include/evaluators.h | 6 inst/include/hfunc.h | 29 +++- inst/include/integrate.h | 8 - inst/include/interp.h | 40 ++++-- inst/include/kernels.h | 12 + inst/include/renorm.h | 9 + man/kdecop.Rd | 6 src/RcppExports.cpp | 196 +++++++++++++++++------------ src/evaluators.cpp | 132 ++++++++++++-------- src/hfunc.cpp | 30 +++- src/integrate.cpp | 11 + src/interp.cpp | 56 +++++--- src/kernels.cpp | 77 ++++++++--- src/renorm.cpp | 81 ++++++------ 27 files changed, 639 insertions(+), 447 deletions(-)
Title: A Simple XML Tree Parser and Generator
Description: Provides a simple XML tree parser/generator. It includes functions
to read XML files into R objects, get information out of and into nodes, and
write R objects back to XML code. It's not as powerful as the 'XML' package
and doesn't aim to be, but for simple XML handling it could be useful. It was
originally developed for the R GUI and IDE RKWard (https://rkward.kde.org), to
make plugin development easier.
Author: Meik Michalke [aut, cre]
Maintainer: Meik Michalke <meik.michalke@hhu.de>
Diff between XiMpLe versions 0.03-21 dated 2013-12-21 and 0.03-23 dated 2015-11-24
XiMpLe-0.03-21/XiMpLe/R/XiMpLe-internal.roxy.all.R |only XiMpLe-0.03-21/XiMpLe/R/XiMpLe.doc-class.R |only XiMpLe-0.03-21/XiMpLe/R/XiMpLe.node-class.R |only XiMpLe-0.03-21/XiMpLe/R/node.R |only XiMpLe-0.03-21/XiMpLe/R/pasteXML-methods.R |only XiMpLe-0.03-21/XiMpLe/R/show-methods.R |only XiMpLe-0.03-21/XiMpLe/inst/tests |only XiMpLe-0.03-21/XiMpLe/inst/vignettes |only XiMpLe-0.03-21/XiMpLe/tests/test_XiMpLe_package.R |only XiMpLe-0.03-23/XiMpLe/ChangeLog | 19 XiMpLe-0.03-23/XiMpLe/DESCRIPTION | 39 XiMpLe-0.03-23/XiMpLe/MD5 | 80 +- XiMpLe-0.03-23/XiMpLe/NAMESPACE | 53 - XiMpLe-0.03-23/XiMpLe/R/00_class_01_XiMpLe.node.R |only XiMpLe-0.03-23/XiMpLe/R/00_class_02_XiMpLe.doc.R |only XiMpLe-0.03-23/XiMpLe/R/01_method_01_pasteXML.R |only XiMpLe-0.03-23/XiMpLe/R/01_method_02_node.R |only XiMpLe-0.03-23/XiMpLe/R/01_method_03_show.R |only XiMpLe-0.03-23/XiMpLe/R/XMLNode.R | 70 - XiMpLe-0.03-23/XiMpLe/R/XMLTree.R | 64 - XiMpLe-0.03-23/XiMpLe/R/XiMpLe-internal.R | 836 ++++++++++----------- XiMpLe-0.03-23/XiMpLe/R/XiMpLe-package.R | 14 XiMpLe-0.03-23/XiMpLe/R/parseXMLTree.R | 108 +- XiMpLe-0.03-23/XiMpLe/R/pasteXMLTag.R | 182 ++-- XiMpLe-0.03-23/XiMpLe/R/zzz_is_get_utils.R | 649 ++++++++-------- XiMpLe-0.03-23/XiMpLe/inst/CITATION | 22 XiMpLe-0.03-23/XiMpLe/inst/NEWS.Rd | 42 + XiMpLe-0.03-23/XiMpLe/inst/doc |only XiMpLe-0.03-23/XiMpLe/man/XMLGetters-methods.Rd | 227 +++-- XiMpLe-0.03-23/XiMpLe/man/XMLNode.Rd | 46 - XiMpLe-0.03-23/XiMpLe/man/XMLTree.Rd | 50 - XiMpLe-0.03-23/XiMpLe/man/XiMpLe-package.Rd | 37 XiMpLe-0.03-23/XiMpLe/man/node.Rd | 86 +- XiMpLe-0.03-23/XiMpLe/man/parseXMLTree.Rd | 50 - XiMpLe-0.03-23/XiMpLe/man/pasteXML-methods.Rd | 63 - XiMpLe-0.03-23/XiMpLe/man/pasteXMLTag.Rd | 95 +- XiMpLe-0.03-23/XiMpLe/man/show-methods.Rd | 23 XiMpLe-0.03-23/XiMpLe/tests/testthat |only XiMpLe-0.03-23/XiMpLe/tests/testthat.R |only XiMpLe-0.03-23/XiMpLe/vignettes |only 40 files changed, 1542 insertions(+), 1313 deletions(-)
Title: Concurrent Generation of Ordinal and Normal Data with Given
Correlation Matrix and Marginal Distributions
Description: Implementation of a procedure for generating samples from a mixed distribution of ordinal and normal random variables with pre-specified correlation matrix and marginal distributions.
Author: Anup Amatya and Hakan Demirtas
Maintainer: Anup Amatya<aamatya@nmsu.edu>
Diff between OrdNor versions 1.0 dated 2013-12-02 and 2.0 dated 2015-11-24
DESCRIPTION | 15 ++++++++------- MD5 | 7 ++++--- NAMESPACE | 2 ++ inst |only man/genOrdNor.Rd | 3 +++ 5 files changed, 17 insertions(+), 10 deletions(-)
Title: Variance Component Analysis
Description: ANOVA-type estimation (prediction) of random effects in linear mixed models is implemented, following
Searle et al. 1991 (ANOVA for unbalanced data). For better performance the SWEEP-Operator is now implemented
for generating the ANOVA Type-1 error sum of squares. The primary objective of this package is to perform
Variance Component Analyses (VCA). This is a special type of analysis frequently used in verifying the
precision performance of diagnostics.
The Satterthwaite approximation of the total degrees of freedom and for individual variance components is
implemented. These are used in the Chi-Squared tests against a claimed value, and in the respective confidence intervals.
Satterthwaite's approximation of denominator degrees of freedom in t-/F-tests of fixed effects are also
available.
There are several functions for extracting, random effects, fixed effects, variance-covariance
matrices of random and fixed effects. Residuals (marginal, conditional) can be extracted as raw, standardized
and studentized residuals.
Additionally, plotting methods for residuals and random effects and a variability chart are available. The latter
is useful for visualizing the variability in sub-classes emerging from the experimental design.
Author: Andre Schuetzenmeister <andre.schuetzenmeister@roche.com>
Maintainer: Andre Schuetzenmeister <andre.schuetzenmeister@roche.com>
Diff between VCA versions 1.2 dated 2015-07-20 and 1.2.1 dated 2015-11-24
DESCRIPTION | 8 MD5 | 41 +-- R/plot.R | 27 +- R/vca.R | 211 +++++++++++------- data/HugeData.RData |only data/chol2invData.RData |only inst/ChangeLog.txt | 347 ++++++++++++++++++++++++++++++ inst/UnitTests/VCA_UnitTest_Protocol.html |only inst/UnitTests/runit.anovaMM.R | 14 + inst/UnitTests/runit.anovaVCA.R | 14 + inst/UnitTests/runit.misc.R | 24 +- man/Csweep.Rd | 9 man/HugeData.Rd |only man/Solve.Rd | 9 man/VCA-Package.Rd | 6 man/VCAinference.Rd | 2 man/anovaDF.Rd | 2 man/anovaMM.Rd | 24 +- man/anovaVCA.Rd | 51 ++-- man/chol2invData.Rd |only man/getSSQsweep.Rd | 11 man/getVCvar.Rd | 2 man/vcov.VCA.Rd | 7 man/vcovFixed.Rd | 7 24 files changed, 647 insertions(+), 169 deletions(-)
Title: Sparse Discriminant Analysis
Description: Performs sparse linear discriminant analysis for gaussians and mixture of gaussians models.
Author: Line Clemmensen <lhc@imm.dtu.dk>, contributions by Max Kuhn
Maintainer: Max Kuhn <max.kuhn@pfizer.com>
Diff between sparseLDA versions 0.1-6 dated 2012-06-19 and 0.1-7 dated 2015-11-24
DESCRIPTION | 20 +- MD5 | 8 NAMESPACE | 7 R/smda.R | 581 +++++++++++++++++++++++++++++------------------------------- man/smda.Rd | 8 5 files changed, 311 insertions(+), 313 deletions(-)
Title: Single and Multi-Objective Optimization Test Functions
Description: Provides generators for a high number of both single- and multi-
objective test functions which are frequently used for the benchmarking of
(numerical) optimization algorithms. Moreover, it offers a set of convenient
functions to generate, plot and work with objective functions.
Author: Jakob Bossek [aut, cre]
Maintainer: Jakob Bossek <j.bossek@gmail.com>
Diff between smoof versions 1.0 dated 2015-05-18 and 1.1 dated 2015-11-24
smoof-1.0/smoof/R/sof.bochachevsky.R |only smoof-1.0/smoof/man/makeBochachevskyFunction.Rd |only smoof-1.1/smoof/DESCRIPTION | 17 smoof-1.1/smoof/MD5 | 426 +++++----- smoof-1.1/smoof/NAMESPACE | 45 + smoof-1.1/smoof/NEWS |only smoof-1.1/smoof/R/RcppExports.R |only smoof-1.1/smoof/R/filterFunctionByTags.R | 36 smoof-1.1/smoof/R/getBoxConstraints.R |only smoof-1.1/smoof/R/getGlobalOptimum.R | 4 smoof-1.1/smoof/R/getTags.R | 5 smoof-1.1/smoof/R/hasTags.R |only smoof-1.1/smoof/R/makeFunctionByName.R |only smoof-1.1/smoof/R/makeMultiObjectiveFunction.R | 7 smoof-1.1/smoof/R/makeObjectiveFunction.R | 9 smoof-1.1/smoof/R/makeSingleObjectiveFunction.R | 7 smoof-1.1/smoof/R/makeUFFunction.R | 3 smoof-1.1/smoof/R/mof.dtlz1.R |only smoof-1.1/smoof/R/mof.dtlz2.R |only smoof-1.1/smoof/R/mof.dtlz3.R |only smoof-1.1/smoof/R/mof.dtlz4.R |only smoof-1.1/smoof/R/mof.dtlz5.R |only smoof-1.1/smoof/R/mof.dtlz6.R |only smoof-1.1/smoof/R/mof.dtlz7.R |only smoof-1.1/smoof/R/mof.zdt1.R | 2 smoof-1.1/smoof/R/mof.zdt2.R | 2 smoof-1.1/smoof/R/mof.zdt3.R | 2 smoof-1.1/smoof/R/mof.zdt4.R | 2 smoof-1.1/smoof/R/mof.zdt6.R | 2 smoof-1.1/smoof/R/shouldBeMinimized.R |only smoof-1.1/smoof/R/sof.ackley.R | 4 smoof-1.1/smoof/R/sof.adjiman.R | 4 smoof-1.1/smoof/R/sof.alpine01.R | 4 smoof-1.1/smoof/R/sof.alpine02.R | 3 smoof-1.1/smoof/R/sof.aluffi-pentini.R |only smoof-1.1/smoof/R/sof.bartels.conn.R | 2 smoof-1.1/smoof/R/sof.beale.R | 2 smoof-1.1/smoof/R/sof.bent.cigar.R |only smoof-1.1/smoof/R/sof.bird.R | 2 smoof-1.1/smoof/R/sof.bohachevsky.n1.R |only smoof-1.1/smoof/R/sof.booth.R | 2 smoof-1.1/smoof/R/sof.branin.R | 2 smoof-1.1/smoof/R/sof.brent.R | 2 smoof-1.1/smoof/R/sof.brown.R | 2 smoof-1.1/smoof/R/sof.bukin.n2.R | 2 smoof-1.1/smoof/R/sof.bukin.n4.R | 2 smoof-1.1/smoof/R/sof.bukin.n6.R | 2 smoof-1.1/smoof/R/sof.carrom.table.R | 2 smoof-1.1/smoof/R/sof.chichinadze.R | 2 smoof-1.1/smoof/R/sof.chung.reynolds.R | 2 smoof-1.1/smoof/R/sof.complex.R |only smoof-1.1/smoof/R/sof.cosine.mixture.R | 3 smoof-1.1/smoof/R/sof.cross.in.tray.R | 2 smoof-1.1/smoof/R/sof.cube.R | 2 smoof-1.1/smoof/R/sof.deckkers.aarts.R | 2 smoof-1.1/smoof/R/sof.deflected.corrugated.spring.R |only smoof-1.1/smoof/R/sof.dixon.price.R | 2 smoof-1.1/smoof/R/sof.double.sum.R | 2 smoof-1.1/smoof/R/sof.drop.wave.R | 2 smoof-1.1/smoof/R/sof.easom.R | 2 smoof-1.1/smoof/R/sof.eggcrate.R | 2 smoof-1.1/smoof/R/sof.eggholder.R | 5 smoof-1.1/smoof/R/sof.el.attar.vidyasagar.dutta.R | 2 smoof-1.1/smoof/R/sof.engvall.R |only smoof-1.1/smoof/R/sof.exponential.R | 4 smoof-1.1/smoof/R/sof.freudenstein.roth.R | 2 smoof-1.1/smoof/R/sof.giunta.R | 6 smoof-1.1/smoof/R/sof.goldstein.price.R | 2 smoof-1.1/smoof/R/sof.griewank.R | 2 smoof-1.1/smoof/R/sof.hansen.R | 2 smoof-1.1/smoof/R/sof.himmelblau.R | 2 smoof-1.1/smoof/R/sof.holder.table.n1.R | 2 smoof-1.1/smoof/R/sof.holder.table.n2.R | 2 smoof-1.1/smoof/R/sof.hosaki.R | 2 smoof-1.1/smoof/R/sof.hyper.ellipsoid.R | 4 smoof-1.1/smoof/R/sof.jennrichsampson.R |only smoof-1.1/smoof/R/sof.judge.R |only smoof-1.1/smoof/R/sof.keane.R | 3 smoof-1.1/smoof/R/sof.kearfott.R |only smoof-1.1/smoof/R/sof.leon.R | 2 smoof-1.1/smoof/R/sof.matyas.R | 4 smoof-1.1/smoof/R/sof.mccormick.R | 2 smoof-1.1/smoof/R/sof.michalewicz.R | 20 smoof-1.1/smoof/R/sof.periodic.R | 2 smoof-1.1/smoof/R/sof.powell.sum.R | 2 smoof-1.1/smoof/R/sof.price.n1.R | 2 smoof-1.1/smoof/R/sof.price.n2.R | 2 smoof-1.1/smoof/R/sof.price.n4.R | 2 smoof-1.1/smoof/R/sof.rastrigin.R | 4 smoof-1.1/smoof/R/sof.rosenbrock.R | 10 smoof-1.1/smoof/R/sof.schaffer.function.2.R | 2 smoof-1.1/smoof/R/sof.schaffer.function.4.R | 2 smoof-1.1/smoof/R/sof.schwefel.R | 4 smoof-1.1/smoof/R/sof.shubert.R | 2 smoof-1.1/smoof/R/sof.six.hump.camel.back.function.R | 2 smoof-1.1/smoof/R/sof.sphere.R | 2 smoof-1.1/smoof/R/sof.styblinski.tang.R | 2 smoof-1.1/smoof/R/sof.sum.of.different.powers.R | 4 smoof-1.1/smoof/R/sof.three.hump.camel.R | 2 smoof-1.1/smoof/R/sof.trecanni.R | 2 smoof-1.1/smoof/R/sof.zettl.R | 2 smoof-1.1/smoof/R/zzz.R | 4 smoof-1.1/smoof/man/addCountingWrapper.Rd | 2 smoof-1.1/smoof/man/addLoggingWrapper.Rd | 3 smoof-1.1/smoof/man/autoplot.smoof_function.Rd | 2 smoof-1.1/smoof/man/computeExpectedRunningTime.Rd | 2 smoof-1.1/smoof/man/doesCountEvaluations.Rd | 2 smoof-1.1/smoof/man/filterFunctionsByTags.Rd | 15 smoof-1.1/smoof/man/getAvailableTags.Rd | 2 smoof-1.1/smoof/man/getDescription.Rd | 2 smoof-1.1/smoof/man/getGlobalOptimum.Rd | 3 smoof-1.1/smoof/man/getLoggedValues.Rd | 2 smoof-1.1/smoof/man/getLowerBoxConstraints.Rd |only smoof-1.1/smoof/man/getName.Rd | 2 smoof-1.1/smoof/man/getNumberOfEvaluations.Rd | 2 smoof-1.1/smoof/man/getNumberOfObjectives.Rd | 2 smoof-1.1/smoof/man/getNumberOfParameters.Rd | 2 smoof-1.1/smoof/man/getParamSet.Rd | 2 smoof-1.1/smoof/man/getTags.Rd | 2 smoof-1.1/smoof/man/getUpperBoxConstraints.Rd |only smoof-1.1/smoof/man/getWrappedFunction.Rd | 2 smoof-1.1/smoof/man/hasBoxConstraints.Rd | 2 smoof-1.1/smoof/man/hasConstraints.Rd | 2 smoof-1.1/smoof/man/hasGlobalOptimum.Rd | 2 smoof-1.1/smoof/man/hasOtherConstraints.Rd | 2 smoof-1.1/smoof/man/hasTags.Rd |only smoof-1.1/smoof/man/isMultiobjective.Rd | 2 smoof-1.1/smoof/man/isNoisy.Rd | 2 smoof-1.1/smoof/man/isSingleobjective.Rd | 2 smoof-1.1/smoof/man/isSmoofFunction.Rd | 2 smoof-1.1/smoof/man/isVectorized.Rd | 2 smoof-1.1/smoof/man/isWrappedSmoofFunction.Rd | 2 smoof-1.1/smoof/man/makeAckleyFunction.Rd | 2 smoof-1.1/smoof/man/makeAdjimanFunction.Rd | 2 smoof-1.1/smoof/man/makeAlpine01Function.Rd | 2 smoof-1.1/smoof/man/makeAlpine02Function.Rd | 2 smoof-1.1/smoof/man/makeAluffiPentiniFunction.Rd |only smoof-1.1/smoof/man/makeBBOBFunction.Rd | 2 smoof-1.1/smoof/man/makeBartelsConnFunction.Rd | 2 smoof-1.1/smoof/man/makeBealeFunction.Rd | 2 smoof-1.1/smoof/man/makeBentCigarFunction.Rd |only smoof-1.1/smoof/man/makeBirdFunction.Rd | 2 smoof-1.1/smoof/man/makeBohachevskyN1Function.Rd |only smoof-1.1/smoof/man/makeBoothFunction.Rd | 2 smoof-1.1/smoof/man/makeBraninFunction.Rd | 2 smoof-1.1/smoof/man/makeBrentFunction.Rd | 2 smoof-1.1/smoof/man/makeBrownFunction.Rd | 2 smoof-1.1/smoof/man/makeBukinN2Function.Rd | 2 smoof-1.1/smoof/man/makeBukinN4Function.Rd | 2 smoof-1.1/smoof/man/makeBukinN6Function.Rd | 2 smoof-1.1/smoof/man/makeCarromTableFunction.Rd | 2 smoof-1.1/smoof/man/makeChichinadzeFunction.Rd | 2 smoof-1.1/smoof/man/makeChungReynoldsFunction.Rd | 2 smoof-1.1/smoof/man/makeComplexFunction.Rd |only smoof-1.1/smoof/man/makeCosineMixtureFunction.Rd | 2 smoof-1.1/smoof/man/makeCrossInTrayFunction.Rd | 2 smoof-1.1/smoof/man/makeCubeFunction.Rd | 2 smoof-1.1/smoof/man/makeDTLZ1Function.Rd |only smoof-1.1/smoof/man/makeDTLZ2Function.Rd |only smoof-1.1/smoof/man/makeDTLZ3Function.Rd |only smoof-1.1/smoof/man/makeDTLZ4Function.Rd |only smoof-1.1/smoof/man/makeDTLZ5Function.Rd |only smoof-1.1/smoof/man/makeDTLZ6Function.Rd |only smoof-1.1/smoof/man/makeDTLZ7Function.Rd |only smoof-1.1/smoof/man/makeDeckkersAartsFunction.Rd | 2 smoof-1.1/smoof/man/makeDeflectedCorrugatedSpringFunction.Rd |only smoof-1.1/smoof/man/makeDixonPriceFunction.Rd | 2 smoof-1.1/smoof/man/makeDoubleSumFunction.Rd | 2 smoof-1.1/smoof/man/makeEasomFunction.Rd | 2 smoof-1.1/smoof/man/makeEggCrateFunction.Rd | 2 smoof-1.1/smoof/man/makeEggholderFunction.Rd | 2 smoof-1.1/smoof/man/makeElAttarVidyasagarDuttaFunction.Rd | 2 smoof-1.1/smoof/man/makeEngvallFunction.Rd |only smoof-1.1/smoof/man/makeExponentialFunction.Rd | 2 smoof-1.1/smoof/man/makeFreudensteinRothFunction.Rd | 2 smoof-1.1/smoof/man/makeFunctionByName.Rd |only smoof-1.1/smoof/man/makeGeneralizedDropWaveFunction.Rd | 2 smoof-1.1/smoof/man/makeGiuntaFunction.Rd | 2 smoof-1.1/smoof/man/makeGoldsteinPriceFunction.Rd | 2 smoof-1.1/smoof/man/makeGriewankFunction.Rd | 2 smoof-1.1/smoof/man/makeHansenFunction.Rd | 2 smoof-1.1/smoof/man/makeHimmelblauFunction.Rd | 2 smoof-1.1/smoof/man/makeHolderTableN1Function.Rd | 2 smoof-1.1/smoof/man/makeHolderTableN2Function.Rd | 2 smoof-1.1/smoof/man/makeHosakiFunction.Rd | 2 smoof-1.1/smoof/man/makeHyperEllipsoidFunction.Rd | 2 smoof-1.1/smoof/man/makeJennrichSampsonFunction.Rd |only smoof-1.1/smoof/man/makeJudgeFunction.Rd |only smoof-1.1/smoof/man/makeKeaneFunction.Rd | 2 smoof-1.1/smoof/man/makeKearfottFunction.Rd |only smoof-1.1/smoof/man/makeLeonFunction.Rd | 2 smoof-1.1/smoof/man/makeMPM2Function.Rd | 3 smoof-1.1/smoof/man/makeMatyasFunction.Rd | 4 smoof-1.1/smoof/man/makeMcCormickFunction.Rd | 2 smoof-1.1/smoof/man/makeMichalewiczFunction.Rd | 2 smoof-1.1/smoof/man/makeMultiObjectiveFunction.Rd | 10 smoof-1.1/smoof/man/makePeriodicFunction.Rd | 2 smoof-1.1/smoof/man/makePowellSumFunction.Rd | 2 smoof-1.1/smoof/man/makePriceN1Function.Rd | 2 smoof-1.1/smoof/man/makePriceN2Function.Rd | 2 smoof-1.1/smoof/man/makePriceN4Function.Rd | 2 smoof-1.1/smoof/man/makeRastriginFunction.Rd | 2 smoof-1.1/smoof/man/makeRosenbrockFunction.Rd | 2 smoof-1.1/smoof/man/makeSchafferN2Function.Rd | 2 smoof-1.1/smoof/man/makeSchafferN4Function.Rd | 2 smoof-1.1/smoof/man/makeSchwefelFunction.Rd | 2 smoof-1.1/smoof/man/makeShubertFunction.Rd | 2 smoof-1.1/smoof/man/makeSingleObjectiveFunction.Rd | 11 smoof-1.1/smoof/man/makeSixHumpCamelFunction.Rd | 2 smoof-1.1/smoof/man/makeSphereFunction.Rd | 2 smoof-1.1/smoof/man/makeStyblinkskiTangFunction.Rd | 2 smoof-1.1/smoof/man/makeSumOfDifferentSquaresFunction.Rd | 2 smoof-1.1/smoof/man/makeThreeHumpCamelFunction.Rd | 2 smoof-1.1/smoof/man/makeTrecanniFunction.Rd | 2 smoof-1.1/smoof/man/makeUFFunction.Rd | 6 smoof-1.1/smoof/man/makeZDT1Function.Rd | 2 smoof-1.1/smoof/man/makeZDT2Function.Rd | 2 smoof-1.1/smoof/man/makeZDT3Function.Rd | 2 smoof-1.1/smoof/man/makeZDT4Function.Rd | 2 smoof-1.1/smoof/man/makeZDT6Function.Rd | 2 smoof-1.1/smoof/man/makeZettlFunction.Rd | 2 smoof-1.1/smoof/man/plot.smoof_function.Rd | 2 smoof-1.1/smoof/man/plot1DNumeric.Rd | 2 smoof-1.1/smoof/man/plot2DNumeric.Rd | 2 smoof-1.1/smoof/man/plot3D.Rd | 2 smoof-1.1/smoof/man/resetEvaluationCounter.Rd | 2 smoof-1.1/smoof/man/shouldBeMinimized.Rd |only smoof-1.1/smoof/man/smoof-package.Rd | 2 smoof-1.1/smoof/man/violatesConstraints.Rd | 2 smoof-1.1/smoof/man/visualizeParetoOptimalFront.Rd | 2 smoof-1.1/smoof/src/RcppExports.cpp |only smoof-1.1/smoof/src/dtlz.cpp |only smoof-1.1/smoof/tests/testthat/Rplots.pdf |binary smoof-1.1/smoof/tests/testthat/helper_zzz.R | 2 smoof-1.1/smoof/tests/testthat/test_filterFunctionByTags.R |only smoof-1.1/smoof/tests/testthat/test_helpers.R |only smoof-1.1/smoof/tests/testthat/test_makeFunctionByName.R |only smoof-1.1/smoof/tests/testthat/test_makeSingleObjectiveFunction.R | 2 smoof-1.1/smoof/tests/testthat/test_soofuns.R | 7 239 files changed, 599 insertions(+), 416 deletions(-)
Title: Matrix-Based Partial Least Squares Estimation
Description: Partial Least Squares Path Modeling
algorithm and related algorithms. The algorithm implementations aim for
computational efficiency using matrix algebra and covariance data. The
package is designed toward Monte Carlo simulations and includes functions
to perform simple Monte Carlo simulations.
Author: Mikko Rönkkö [aut, cre]
Maintainer: Mikko Rönkkö <mikko.ronkko@aalto.fi>
Diff between matrixpls versions 0.5.0 dated 2014-11-29 and 0.6.0 dated 2015-11-24
matrixpls-0.5.0/matrixpls/R/matrixpls.plsc.R |only matrixpls-0.5.0/matrixpls/demo |only matrixpls-0.5.0/matrixpls/man/AVE.Rd |only matrixpls-0.5.0/matrixpls/man/CR.Rd |only matrixpls-0.5.0/matrixpls/man/GoF.Rd |only matrixpls-0.5.0/matrixpls/man/R2.Rd |only matrixpls-0.5.0/matrixpls/man/convCheck.absolute.Rd |only matrixpls-0.5.0/matrixpls/man/convCheck.relative.Rd |only matrixpls-0.5.0/matrixpls/man/convCheck.square.Rd |only matrixpls-0.5.0/matrixpls/man/inner.GSCA.Rd |only matrixpls-0.5.0/matrixpls/man/inner.Horst.Rd |only matrixpls-0.5.0/matrixpls/man/inner.centroid.Rd |only matrixpls-0.5.0/matrixpls/man/inner.factor.Rd |only matrixpls-0.5.0/matrixpls/man/inner.identity.Rd |only matrixpls-0.5.0/matrixpls/man/inner.path.Rd |only matrixpls-0.5.0/matrixpls/man/loadings.Rd |only matrixpls-0.5.0/matrixpls/man/optim.GCCA.Rd |only matrixpls-0.5.0/matrixpls/man/optim.GSCA.Rd |only matrixpls-0.5.0/matrixpls/man/optim.maximizeInnerR2.Rd |only matrixpls-0.5.0/matrixpls/man/optim.maximizePrediction.Rd |only matrixpls-0.5.0/matrixpls/man/outer.GSCA.Rd |only matrixpls-0.5.0/matrixpls/man/outer.RGCCA.Rd |only matrixpls-0.5.0/matrixpls/man/outer.factor.Rd |only matrixpls-0.5.0/matrixpls/man/outer.fixedWeights.Rd |only matrixpls-0.5.0/matrixpls/man/outer.modeA.Rd |only matrixpls-0.5.0/matrixpls/man/outer.modeB.Rd |only matrixpls-0.5.0/matrixpls/man/params.plsc.Rd |only matrixpls-0.5.0/matrixpls/man/params.plsregression.Rd |only matrixpls-0.5.0/matrixpls/man/params.regression.Rd |only matrixpls-0.5.0/matrixpls/man/params.tsls.Rd |only matrixpls-0.5.0/matrixpls/man/signChange.construct.Rd |only matrixpls-0.5.0/matrixpls/man/signChange.individual.Rd |only matrixpls-0.5.0/matrixpls/man/weight.fixed.Rd |only matrixpls-0.5.0/matrixpls/man/weight.optim.Rd |only matrixpls-0.5.0/matrixpls/man/weight.pls.Rd |only matrixpls-0.6.0/matrixpls/DESCRIPTION | 28 matrixpls-0.6.0/matrixpls/MD5 | 102 matrixpls-0.6.0/matrixpls/NAMESPACE | 121 matrixpls-0.6.0/matrixpls/R/matrixpls.R | 1793 ---------- matrixpls-0.6.0/matrixpls/R/matrixpls.boot.R | 90 matrixpls-0.6.0/matrixpls/R/matrixpls.convergenceCheck.R |only matrixpls-0.6.0/matrixpls/R/matrixpls.estimators.R |only matrixpls-0.6.0/matrixpls/R/matrixpls.inner.R |only matrixpls-0.6.0/matrixpls/R/matrixpls.optim.R |only matrixpls-0.6.0/matrixpls/R/matrixpls.outer.R |only matrixpls-0.6.0/matrixpls/R/matrixpls.params.R |only matrixpls-0.6.0/matrixpls/R/matrixpls.plspm.R | 184 - matrixpls-0.6.0/matrixpls/R/matrixpls.postestimation.R | 508 ++ matrixpls-0.6.0/matrixpls/R/matrixpls.reliability.R |only matrixpls-0.6.0/matrixpls/R/matrixpls.sempls.R | 14 matrixpls-0.6.0/matrixpls/R/matrixpls.signAmbiquityCorrection.R |only matrixpls-0.6.0/matrixpls/R/matrixpls.signChangeCorrection.R |only matrixpls-0.6.0/matrixpls/R/matrixpls.sim.R | 104 matrixpls-0.6.0/matrixpls/R/matrixpls.util.R |only matrixpls-0.6.0/matrixpls/R/matrixpls.weights.R |only matrixpls-0.6.0/matrixpls/man/GSCA.Rd |only matrixpls-0.6.0/matrixpls/man/ave.Rd |only matrixpls-0.6.0/matrixpls/man/convergenceCheck.Rd |only matrixpls-0.6.0/matrixpls/man/cr.Rd |only matrixpls-0.6.0/matrixpls/man/effects.matrixpls.Rd | 13 matrixpls-0.6.0/matrixpls/man/fitSummary.Rd | 15 matrixpls-0.6.0/matrixpls/man/fitted.matrixpls.Rd |only matrixpls-0.6.0/matrixpls/man/gof.Rd |only matrixpls-0.6.0/matrixpls/man/htmt.Rd |only matrixpls-0.6.0/matrixpls/man/innerEstimators.Rd |only matrixpls-0.6.0/matrixpls/man/loadings.matrixpls.Rd |only matrixpls-0.6.0/matrixpls/man/matrixpls-common.Rd |only matrixpls-0.6.0/matrixpls/man/matrixpls-package.Rd | 185 - matrixpls-0.6.0/matrixpls/man/matrixpls.Rd | 66 matrixpls-0.6.0/matrixpls/man/matrixpls.boot.Rd | 15 matrixpls-0.6.0/matrixpls/man/matrixpls.plspm.Rd | 95 matrixpls-0.6.0/matrixpls/man/matrixpls.sempls.Rd | 100 matrixpls-0.6.0/matrixpls/man/matrixpls.sim.Rd | 137 matrixpls-0.6.0/matrixpls/man/optimCriterion.Rd |only matrixpls-0.6.0/matrixpls/man/outerEstimators.Rd |only matrixpls-0.6.0/matrixpls/man/parameterEstimators.Rd |only matrixpls-0.6.0/matrixpls/man/params.separate.Rd |only matrixpls-0.6.0/matrixpls/man/predict.matrixpls.Rd | 11 matrixpls-0.6.0/matrixpls/man/r2.Rd |only matrixpls-0.6.0/matrixpls/man/reliability.weightLoadingProduct.Rd |only matrixpls-0.6.0/matrixpls/man/residuals.matrixpls.Rd | 35 matrixpls-0.6.0/matrixpls/man/signAmbiquityCorrection.Rd |only matrixpls-0.6.0/matrixpls/man/signChangeCorrection.Rd |only matrixpls-0.6.0/matrixpls/man/weightAlgorithms.Rd |only 84 files changed, 1159 insertions(+), 2457 deletions(-)
Title: Tools for Pre-Processing Emission-Excitation-Matrix (EEM)
Description: Provides various tools to calculate EEM metrics and preprocess EEM for PARAFAC analysis.
Author: Philippe Massicotte [aut, cre]
Maintainer: Philippe Massicotte <pm@bios.au.dk>
Diff between eemR versions 0.1.0 dated 2015-11-19 and 0.1.1 dated 2015-11-24
DESCRIPTION |only MD5 |only NAMESPACE |only R |only README.md |only data |only inst/extdata/aqualog |only inst/extdata/cary/eem/sample2.csv |only inst/extdata/cary/eem/sample3.csv | 1533 +++++++++++++++++++++++++++++++++++++- inst/extdata/shimadzu |only man |only src |only 12 files changed, 1532 insertions(+), 1 deletion(-)
Title: Gene Enrichment Analysis from ACSN Maps or Gmt Files
Description: Compute and represent gene set enrichment or depletion from your data based on pre-saved maps from the Atlas of Cancer Signalling Networks (ACSN) or user imported maps.
The gene set enrichment can be run with hypergeometric test or Fisher exact test, and can use multiple corrections.
Visualization of data can be done either by barplots or heatmaps.
Author: Paul Deveau [aut, cre],
Eric Bonnet [aut]
Maintainer: Paul Deveau <paul.deveau@curie.fr>
Diff between ACSNMineR versions 0.10.15 dated 2015-10-27 and 0.15.11 dated 2015-11-24
DESCRIPTION | 8 MD5 | 6 R/ACSN_Enrichment.R | 431 +++++++++++++++++++++++++------------------- inst/doc/ACSN-vignette.html | 49 ----- 4 files changed, 267 insertions(+), 227 deletions(-)
Title: Calculate Pairwise Multiple Comparisons of Mean Rank Sums
Description: The Kruskal and Wallis one-way analysis of variance by ranks
can be employed, if the data do not meet the assumptions
for one-way ANOVA. Provided that significant differences
were detected by the Kruskal-Wallis-Test, one may be interested
in applying post-hoc tests for pairwise multiple comparisons
of the ranked data (Nemenyi's test, Dunn's test, Conover's test,
van der Waerden's test). Similarly, one-way ANOVA with repeated
measures that is also referred to as ANOVA with unreplicated
block design can also be conducted via the Friedman-Test.
The consequent post-hoc pairwise multiple comparison tests according
to Nemenyi and Conover are also provided in this package.
Author: Thorsten Pohlert
Maintainer: Thorsten Pohlert <thorsten.pohlert@gmx.de>
Diff between PMCMR versions 2.0 dated 2015-11-13 and 3.0 dated 2015-11-24
DESCRIPTION | 15 +-- MD5 | 42 +++++---- NAMESPACE | 14 ++- R/dunn.test.control.R | 21 ++++ R/posthoc.friedman.conover.R |only R/posthoc.friedman.nemenyi.test.R | 22 ++++ R/posthoc.kruskal.conover.R |only R/posthoc.kruskal.dunn.test.R | 26 ++++- R/posthoc.kruskal.nemenyi.test.R | 20 ++++ R/posthoc.vanWaerden.test.R |only R/vanWaerden.test.R |only inst/NEWS.Rd | 29 ++++++ inst/doc/PMCMR.R | 81 ++++++++++++++--- inst/doc/PMCMR.Rnw | 158 +++++++++++++++++++++++++++++------ inst/doc/PMCMR.pdf |binary man/PMCMR-package.Rd | 19 +++- man/dunn.test.control.Rd | 2 man/posthoc.friedman.conover.test.Rd |only man/posthoc.friedman.nemenyi.test.Rd | 3 man/posthoc.kruskal.conover.Rd |only man/posthoc.kruskal.dunn.test.Rd | 4 man/posthoc.kruskal.nemenyi.test.Rd | 2 man/posthoc.vanWaerden.test.Rd |only man/vanWaerden.test.Rd |only vignettes/PMCMR.Rnw | 158 +++++++++++++++++++++++++++++------ vignettes/PMCMR.bib | 17 +++ 26 files changed, 522 insertions(+), 111 deletions(-)
Title: R Interface to the Levenberg-Marquardt Nonlinear Least-Squares
Algorithm Found in MINPACK, Plus Support for Bounds
Description: The nls.lm function provides an R interface to lmder and lmdif from the MINPACK library, for solving nonlinear least-squares problems by a modification of the Levenberg-Marquardt algorithm, with support for lower and upper parameter bounds. The implementation can be used via nls-like calls using the nlsLM function.
Author: Timur V. Elzhov, Katharine M. Mullen, Andrej-Nikolai Spiess, Ben Bolker
Maintainer: Katharine M. Mullen <mullenkate@gmail.com>
Diff between minpack.lm versions 1.1-9 dated 2015-09-04 and 1.2-0 dated 2015-11-24
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS | 29 ++++++++++++++++------------- R/nlsLM.R | 13 +++++-------- man/nlsLM.Rd | 10 +++------- 5 files changed, 31 insertions(+), 35 deletions(-)
Title: A Genetic Algorithm for Fixed-Size Subset Selection
Description: Function kofnGA uses a genetic algorithm to choose a subset of a
fixed size k from the integers 1:n, such that a user-supplied objective function
is minimized at that subset. The selection step is done by tournament selection
based on ranks, and elitism may be used to retain a portion of the best solutions
from one generation to the next.
Author: Mark A. Wolters
Maintainer: Mark A. Wolters <mark@mwolters.com>
Diff between kofnGA versions 1.1 dated 2015-02-04 and 1.2 dated 2015-11-24
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NAMESPACE | 3 +++ R/kofnGA.R | 18 ++++++++++++++---- inst/CITATION | 31 ++++++++++++++++--------------- man/kofnGA-package.Rd | 9 ++++----- man/kofnGA.Rd | 14 ++++++++++---- 7 files changed, 57 insertions(+), 38 deletions(-)
Title: R Interface for H2O
Description: R scripting functionality for H2O, the open source
math engine for big data that computes parallel distributed
machine learning algorithms such as generalized linear models,
gradient boosting machines, random forests, and neural networks
(deep learning) within various cluster environments.
Author: Spencer Aiello, Tom Kraljevic and Petr Maj, with contributions from the
H2O.ai team
Maintainer: Tom Kraljevic <tomk@0xdata.com>
Diff between h2o versions 3.2.0.3 dated 2015-09-22 and 3.6.0.8 dated 2015-11-24
h2o-3.2.0.3/h2o/R/ast.R |only h2o-3.2.0.3/h2o/R/exec.R |only h2o-3.2.0.3/h2o/R/ops.R |only h2o-3.2.0.3/h2o/R/shim.R |only h2o-3.2.0.3/h2o/demo/h2o.anomaly.remote.R |only h2o-3.2.0.3/h2o/demo/h2o.deeplearning.remote.R |only h2o-3.2.0.3/h2o/demo/h2o.gbm.remote.R |only h2o-3.2.0.3/h2o/demo/h2o.glm.remote.R |only h2o-3.2.0.3/h2o/demo/h2o.kmeans.remote.R |only h2o-3.2.0.3/h2o/demo/h2o.naiveBayes.remote.R |only h2o-3.2.0.3/h2o/demo/h2o.prcomp.remote.R |only h2o-3.2.0.3/h2o/demo/h2o.randomForest.remote.R |only h2o-3.2.0.3/h2o/man/ASTNode-class.Rd |only h2o-3.2.0.3/h2o/man/H2OFrame-Extract.Rd |only h2o-3.2.0.3/h2o/man/H2OFrame-class.Rd |only h2o-3.2.0.3/h2o/man/H2OObject-class.Rd |only h2o-3.2.0.3/h2o/man/H2ORawData-class.Rd |only h2o-3.2.0.3/h2o/man/H2OS4groupGeneric.Rd |only h2o-3.2.0.3/h2o/man/H2OW2V-class.Rd |only h2o-3.2.0.3/h2o/man/Node-class.Rd |only h2o-3.2.0.3/h2o/man/apply-H2OFrame-method.Rd |only h2o-3.2.0.3/h2o/man/as.character-H2OFrame-method.Rd |only h2o-3.2.0.3/h2o/man/as.data.frame.H2OFrame.Rd |only h2o-3.2.0.3/h2o/man/as.environment-H2OFrame-method.Rd |only h2o-3.2.0.3/h2o/man/as.factor-H2OFrame-method.Rd |only h2o-3.2.0.3/h2o/man/as.numeric-H2OFrame-method.Rd |only h2o-3.2.0.3/h2o/man/h2o.colnames.Rd |only h2o-3.2.0.3/h2o/man/h2o.cummax.Rd |only h2o-3.2.0.3/h2o/man/h2o.cummin.Rd |only h2o-3.2.0.3/h2o/man/h2o.cumprod.Rd |only h2o-3.2.0.3/h2o/man/h2o.cumsum.Rd |only h2o-3.2.0.3/h2o/man/h2o.dim.Rd |only h2o-3.2.0.3/h2o/man/h2o.length.Rd |only h2o-3.2.0.3/h2o/man/h2o.nlevels.Rd |only h2o-3.2.0.3/h2o/man/h2o.nrow.Rd |only h2o-3.2.0.3/h2o/man/h2o.setLevel.Rd |only h2o-3.2.0.3/h2o/man/h2o.shim.Rd |only h2o-3.2.0.3/h2o/man/h2o.subset.Rd |only h2o-3.2.0.3/h2o/man/h2o.transform.Rd |only h2o-3.2.0.3/h2o/man/h2o.which.Rd |only h2o-3.2.0.3/h2o/man/is.factor-H2OFrame-method.Rd |only h2o-3.2.0.3/h2o/man/is.numeric-H2OFrame-method.Rd |only h2o-3.2.0.3/h2o/man/na.omit-H2OFrame-method.Rd |only h2o-3.2.0.3/h2o/man/range-H2OFrame-method.Rd |only h2o-3.2.0.3/h2o/man/sapply-H2OFrame-method.Rd |only h2o-3.2.0.3/h2o/man/str.H2OFrame.Rd |only h2o-3.2.0.3/h2o/tests |only h2o-3.6.0.8/h2o/DESCRIPTION | 10 h2o-3.6.0.8/h2o/MD5 | 351 - h2o-3.6.0.8/h2o/NAMESPACE | 166 h2o-3.6.0.8/h2o/R/astfun.R | 516 -- h2o-3.6.0.8/h2o/R/classes.R | 322 - h2o-3.6.0.8/h2o/R/communication.R | 138 h2o-3.6.0.8/h2o/R/connection.R | 172 h2o-3.6.0.8/h2o/R/constants.R | 150 h2o-3.6.0.8/h2o/R/datasets.R |only h2o-3.6.0.8/h2o/R/deeplearning.R | 100 h2o-3.6.0.8/h2o/R/export.R | 52 h2o-3.6.0.8/h2o/R/frame.R | 2902 ++++++---------- h2o-3.6.0.8/h2o/R/gbm.R | 80 h2o-3.6.0.8/h2o/R/glm.R | 94 h2o-3.6.0.8/h2o/R/glrm.R | 134 h2o-3.6.0.8/h2o/R/grid.R | 31 h2o-3.6.0.8/h2o/R/import.R | 108 h2o-3.6.0.8/h2o/R/kmeans.R | 30 h2o-3.6.0.8/h2o/R/kvstore.R | 185 - h2o-3.6.0.8/h2o/R/logging.R | 49 h2o-3.6.0.8/h2o/R/models.R | 415 +- h2o-3.6.0.8/h2o/R/naivebayes.R | 17 h2o-3.6.0.8/h2o/R/parse.R | 116 h2o-3.6.0.8/h2o/R/pca.R | 57 h2o-3.6.0.8/h2o/R/randomforest.R | 65 h2o-3.6.0.8/h2o/R/svd.R | 30 h2o-3.6.0.8/h2o/R/word2vec.R | 20 h2o-3.6.0.8/h2o/demo/00Index | 9 h2o-3.6.0.8/h2o/demo/h2o.anomaly.R | 6 h2o-3.6.0.8/h2o/demo/h2o.deeplearning.R | 4 h2o-3.6.0.8/h2o/demo/h2o.gbm.R | 6 h2o-3.6.0.8/h2o/demo/h2o.glm.R | 4 h2o-3.6.0.8/h2o/demo/h2o.glrm.R |only h2o-3.6.0.8/h2o/demo/h2o.kmeans.R | 4 h2o-3.6.0.8/h2o/demo/h2o.naiveBayes.R | 6 h2o-3.6.0.8/h2o/demo/h2o.prcomp.R | 4 h2o-3.6.0.8/h2o/demo/h2o.randomForest.R | 6 h2o-3.6.0.8/h2o/inst/branch.txt | 2 h2o-3.6.0.8/h2o/inst/buildnum.txt | 2 h2o-3.6.0.8/h2o/inst/extdata/walking.csv |only h2o-3.6.0.8/h2o/man/Frame-Extract.Rd |only h2o-3.6.0.8/h2o/man/Frame.Rd |only h2o-3.6.0.8/h2o/man/H2OClusteringModel-class.Rd | 10 h2o-3.6.0.8/h2o/man/H2OGrid-class.Rd | 2 h2o-3.6.0.8/h2o/man/H2OModel-class.Rd | 7 h2o-3.6.0.8/h2o/man/H2OModelFuture-class.Rd | 2 h2o-3.6.0.8/h2o/man/apply.Rd |only h2o-3.6.0.8/h2o/man/as.character.Frame.Rd |only h2o-3.6.0.8/h2o/man/as.data.frame.Frame.Rd |only h2o-3.6.0.8/h2o/man/as.factor.Rd |only h2o-3.6.0.8/h2o/man/as.h2o.Rd | 9 h2o-3.6.0.8/h2o/man/as.matrix.Frame.Rd |only h2o-3.6.0.8/h2o/man/as.numeric.Rd |only h2o-3.6.0.8/h2o/man/as.vector.Rd |only h2o-3.6.0.8/h2o/man/australia.Rd |only h2o-3.6.0.8/h2o/man/colnames.Rd |only h2o-3.6.0.8/h2o/man/dim.Frame.Rd |only h2o-3.6.0.8/h2o/man/dimnames.Frame.Rd |only h2o-3.6.0.8/h2o/man/h2o-package.Rd | 12 h2o-3.6.0.8/h2o/man/h2o.anomaly.Rd | 10 h2o-3.6.0.8/h2o/man/h2o.anyFactor.Rd | 10 h2o-3.6.0.8/h2o/man/h2o.assign.Rd | 6 h2o-3.6.0.8/h2o/man/h2o.cbind.Rd | 8 h2o-3.6.0.8/h2o/man/h2o.clearLog.Rd | 4 h2o-3.6.0.8/h2o/man/h2o.clusterInfo.Rd | 5 h2o-3.6.0.8/h2o/man/h2o.clusterIsUp.Rd | 2 h2o-3.6.0.8/h2o/man/h2o.clusterStatus.Rd | 10 h2o-3.6.0.8/h2o/man/h2o.confusionMatrix.Rd | 2 h2o-3.6.0.8/h2o/man/h2o.createFrame.Rd | 23 h2o-3.6.0.8/h2o/man/h2o.cut.Rd | 14 h2o-3.6.0.8/h2o/man/h2o.day.Rd | 10 h2o-3.6.0.8/h2o/man/h2o.dayOfWeek.Rd | 10 h2o-3.6.0.8/h2o/man/h2o.dct.Rd | 12 h2o-3.6.0.8/h2o/man/h2o.ddply.Rd | 22 h2o-3.6.0.8/h2o/man/h2o.deepfeatures.Rd | 8 h2o-3.6.0.8/h2o/man/h2o.deeplearning.Rd | 78 h2o-3.6.0.8/h2o/man/h2o.downloadAllLogs.Rd | 8 h2o-3.6.0.8/h2o/man/h2o.downloadCSV.Rd | 8 h2o-3.6.0.8/h2o/man/h2o.download_pojo.Rd | 5 h2o-3.6.0.8/h2o/man/h2o.exportFile.Rd | 10 h2o-3.6.0.8/h2o/man/h2o.exportHDFS.Rd | 10 h2o-3.6.0.8/h2o/man/h2o.find_row_by_threshold.Rd |only h2o-3.6.0.8/h2o/man/h2o.find_threshold_by_max_metric.Rd |only h2o-3.6.0.8/h2o/man/h2o.gbm.Rd | 63 h2o-3.6.0.8/h2o/man/h2o.getFrame.Rd | 14 h2o-3.6.0.8/h2o/man/h2o.getFutureModel.Rd |only h2o-3.6.0.8/h2o/man/h2o.getGrid.Rd | 12 h2o-3.6.0.8/h2o/man/h2o.getId.Rd |only h2o-3.6.0.8/h2o/man/h2o.getModel.Rd | 14 h2o-3.6.0.8/h2o/man/h2o.getTimezone.Rd | 9 h2o-3.6.0.8/h2o/man/h2o.getTypes.Rd |only h2o-3.6.0.8/h2o/man/h2o.getVersion.Rd |only h2o-3.6.0.8/h2o/man/h2o.glm.Rd | 54 h2o-3.6.0.8/h2o/man/h2o.glrm.Rd | 43 h2o-3.6.0.8/h2o/man/h2o.grid.Rd | 9 h2o-3.6.0.8/h2o/man/h2o.group_by.Rd | 10 h2o-3.6.0.8/h2o/man/h2o.gsub.Rd | 3 h2o-3.6.0.8/h2o/man/h2o.head.Rd | 27 h2o-3.6.0.8/h2o/man/h2o.hist.Rd | 2 h2o-3.6.0.8/h2o/man/h2o.hour.Rd | 10 h2o-3.6.0.8/h2o/man/h2o.ifelse.Rd | 12 h2o-3.6.0.8/h2o/man/h2o.importFile.Rd | 48 h2o-3.6.0.8/h2o/man/h2o.impute.Rd | 14 h2o-3.6.0.8/h2o/man/h2o.init.Rd | 25 h2o-3.6.0.8/h2o/man/h2o.insertMissingValues.Rd | 6 h2o-3.6.0.8/h2o/man/h2o.interaction.Rd | 8 h2o-3.6.0.8/h2o/man/h2o.killMinus3.Rd | 5 h2o-3.6.0.8/h2o/man/h2o.kmeans.Rd | 14 h2o-3.6.0.8/h2o/man/h2o.levels.Rd | 5 h2o-3.6.0.8/h2o/man/h2o.listTimezones.Rd | 5 h2o-3.6.0.8/h2o/man/h2o.loadModel.Rd | 16 h2o-3.6.0.8/h2o/man/h2o.logAndEcho.Rd | 7 h2o-3.6.0.8/h2o/man/h2o.ls.Rd | 11 h2o-3.6.0.8/h2o/man/h2o.match.Rd | 16 h2o-3.6.0.8/h2o/man/h2o.mean.Rd | 17 h2o-3.6.0.8/h2o/man/h2o.median.Rd | 13 h2o-3.6.0.8/h2o/man/h2o.merge.Rd | 6 h2o-3.6.0.8/h2o/man/h2o.mktime.Rd |only h2o-3.6.0.8/h2o/man/h2o.month.Rd | 10 h2o-3.6.0.8/h2o/man/h2o.naiveBayes.Rd | 6 h2o-3.6.0.8/h2o/man/h2o.nchar.Rd |only h2o-3.6.0.8/h2o/man/h2o.networkTest.Rd | 5 h2o-3.6.0.8/h2o/man/h2o.openLog.Rd | 6 h2o-3.6.0.8/h2o/man/h2o.parseRaw.Rd | 4 h2o-3.6.0.8/h2o/man/h2o.parseSetup.Rd | 4 h2o-3.6.0.8/h2o/man/h2o.performance.Rd | 6 h2o-3.6.0.8/h2o/man/h2o.prcomp.Rd | 21 h2o-3.6.0.8/h2o/man/h2o.quantile.Rd | 19 h2o-3.6.0.8/h2o/man/h2o.r2.Rd | 2 h2o-3.6.0.8/h2o/man/h2o.randomForest.Rd | 47 h2o-3.6.0.8/h2o/man/h2o.rbind.Rd | 8 h2o-3.6.0.8/h2o/man/h2o.removeAll.Rd | 15 h2o-3.6.0.8/h2o/man/h2o.removeVecs.Rd | 8 h2o-3.6.0.8/h2o/man/h2o.rep_len.Rd | 2 h2o-3.6.0.8/h2o/man/h2o.rm.Rd | 4 h2o-3.6.0.8/h2o/man/h2o.runif.Rd | 6 h2o-3.6.0.8/h2o/man/h2o.saveModel.Rd | 6 h2o-3.6.0.8/h2o/man/h2o.scale.Rd | 9 h2o-3.6.0.8/h2o/man/h2o.sd.Rd | 11 h2o-3.6.0.8/h2o/man/h2o.setTimezone.Rd | 4 h2o-3.6.0.8/h2o/man/h2o.shutdown.Rd | 8 h2o-3.6.0.8/h2o/man/h2o.splitFrame.Rd | 10 h2o-3.6.0.8/h2o/man/h2o.startGLMJob.Rd | 4 h2o-3.6.0.8/h2o/man/h2o.startLogging.Rd | 4 h2o-3.6.0.8/h2o/man/h2o.stopLogging.Rd | 4 h2o-3.6.0.8/h2o/man/h2o.sub.Rd | 3 h2o-3.6.0.8/h2o/man/h2o.summary.Rd | 13 h2o-3.6.0.8/h2o/man/h2o.svd.Rd | 8 h2o-3.6.0.8/h2o/man/h2o.table.Rd | 13 h2o-3.6.0.8/h2o/man/h2o.tabulate.Rd | 7 h2o-3.6.0.8/h2o/man/h2o.tolower.Rd | 4 h2o-3.6.0.8/h2o/man/h2o.toupper.Rd | 4 h2o-3.6.0.8/h2o/man/h2o.var.Rd | 13 h2o-3.6.0.8/h2o/man/h2o.week.Rd | 10 h2o-3.6.0.8/h2o/man/h2o.year.Rd | 10 h2o-3.6.0.8/h2o/man/housevotes.Rd |only h2o-3.6.0.8/h2o/man/iris.Rd |only h2o-3.6.0.8/h2o/man/is.factor.Rd |only h2o-3.6.0.8/h2o/man/is.numeric.Rd |only h2o-3.6.0.8/h2o/man/na.omit.Rd |only h2o-3.6.0.8/h2o/man/names.Frame.Rd |only h2o-3.6.0.8/h2o/man/plot.H2OModel.Rd |only h2o-3.6.0.8/h2o/man/plot.H2OTabulate.Rd |only h2o-3.6.0.8/h2o/man/predict.H2OModel.Rd | 7 h2o-3.6.0.8/h2o/man/print.Frame.Rd |only h2o-3.6.0.8/h2o/man/prostate.Rd |only h2o-3.6.0.8/h2o/man/range.Frame.Rd |only h2o-3.6.0.8/h2o/man/str.Frame.Rd |only h2o-3.6.0.8/h2o/man/summary-H2OGrid-method.Rd | 2 h2o-3.6.0.8/h2o/man/walking.Rd |only h2o-3.6.0.8/h2o/man/zzz.Rd | 8 218 files changed, 3301 insertions(+), 4212 deletions(-)
Title: Automatic Generation of Exams in R
Description: Automatic generation of exams based on exercises in Sweave (R/LaTeX) or R/Markdown format,
including multiple-choice questions and arithmetic problems. Exams can be produced in various formats,
including PDF, HTML, Moodle XML, QTI 1.2 (for OLAT/OpenOLAT), QTI 2.1, ARSnova, and TCExam.
In addition to fully customizable PDF exams, a standardized PDF format is provided that can be
printed, scanned, and automatically evaluated.
Author: Achim Zeileis [aut, cre],
Bettina Gruen [aut],
Friedrich Leisch [aut],
Nikolaus Umlauf [aut],
Dominik Ernst [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between exams versions 2.0-2 dated 2015-01-14 and 2.1-0 dated 2015-11-24
DESCRIPTION | 23 + MD5 | 165 ++++++++----- NAMESPACE | 39 ++- NEWS | 58 ++++ R/exams.R | 2 R/exams2arsnova.R |only R/exams2html.R | 16 + R/exams2moodle.R | 27 +- R/exams2nops.R |only R/exams2pdf.R | 14 - R/exams2qti12.R | 13 - R/exams2qti21.R | 16 - R/exams2tcexam.R |only R/exams_skeleton.R | 466 ++++++++++++++++++++++++++++++++++---- R/formatters.R | 71 +++++ R/nops_eval.R |only R/nops_scan.R |only R/pandoc.R |only R/read_exercise.R | 41 ++- R/read_metainfo.R | 160 +++++++++---- R/tex2image.R | 67 +++-- R/to_choice.R |only R/transformers.R | 28 +- R/xexams.R | 63 ++++- build/vignette.rds |binary inst/doc/exams.Rnw | 2 inst/doc/exams.pdf |binary inst/doc/exams2.R | 8 inst/doc/exams2.Rnw | 23 - inst/doc/exams2.pdf |binary inst/exercises/anova.Rmd |only inst/exercises/anova.Rnw | 97 +++---- inst/exercises/boxhist.Rmd |only inst/exercises/boxplots.Rmd |only inst/exercises/boxplots.Rnw | 11 inst/exercises/cholesky.Rmd |only inst/exercises/cholesky.Rnw | 73 ----- inst/exercises/confint2.Rmd |only inst/exercises/confint2.Rnw | 5 inst/exercises/countrycodes.Rmd |only inst/exercises/countrycodes.Rnw |only inst/exercises/currency8.Rmd |only inst/exercises/dist.Rmd |only inst/exercises/dist2.Rmd |only inst/exercises/dist2.Rnw | 2 inst/exercises/dist3.Rmd |only inst/exercises/dist3.Rnw |only inst/exercises/fourfold.Rmd |only inst/exercises/function.Rmd |only inst/exercises/lagrange.Rmd |only inst/exercises/lagrange.Rnw | 22 - inst/exercises/regression.Rmd |only inst/exercises/regression.Rnw | 27 +- inst/exercises/relfreq.Rmd |only inst/exercises/relfreq.Rnw | 26 -- inst/exercises/scatterplot.Rmd |only inst/exercises/scatterplot.Rnw | 38 +-- inst/exercises/swisscapital.Rmd |only inst/exercises/swisscapital.Rnw |only inst/exercises/switzerland.Rmd |only inst/exercises/switzerland.Rnw |only inst/exercises/tstat.Rmd |only inst/exercises/tstat.Rnw | 34 +- inst/exercises/tstat2.Rmd |only inst/exercises/tstat2.Rnw | 62 ++--- inst/exercises/tstat_verbatim.Rnw |only inst/exercises/ttest.Rmd |only inst/exercises/ttest.Rnw | 40 +-- inst/nops |only inst/tex/exam.tex | 2 inst/tex/html-plain.tex | 2 inst/tex/plain.tex | 2 inst/tex/plain8.tex | 2 inst/tex/plain9.tex | 2 inst/tex/solution.tex | 2 inst/xml/plain.html | 3 inst/xml/plain8.html | 1 inst/xml/plain9.html | 1 man/exams.Rd | 14 - man/exams2arsnova.Rd |only man/exams2html.Rd | 44 +-- man/exams2lops.Rd | 8 man/exams2moodle.Rd | 27 +- man/exams2nops.Rd |only man/exams2pdf.Rd | 12 man/exams2qti12.Rd | 16 - man/exams2tcexam.Rd |only man/exams_skeleton.Rd | 33 +- man/fmt.Rd |only man/matrix_to_schoice.Rd |only man/mchoice2string.Rd | 6 man/nops_eval.Rd |only man/nops_scan.Rd |only man/num_to_schoice.Rd |only man/read_exercise.Rd | 42 ++- man/tex2image.Rd | 25 +- man/xexams.Rd | 29 +- man/xweave.Rd |only vignettes/exams.Rnw | 2 vignettes/exams2.Rnw | 23 - 100 files changed, 1390 insertions(+), 647 deletions(-)
Title: R Bindings for Yummly API
Description:
Yummly.com is one of the world's largest and most powerful recipe search sites and this package aims to provide R bindings for publicly available Yummly.com Recipe API (https://developer.yummly.com/).
Author: Roman Tsegelskyi
Maintainer: Roman Tsegelskyi <roman.tsegelskyi@gmail.com>
Diff between yummlyr versions 0.1.0 dated 2015-11-13 and 0.1.1 dated 2015-11-24
yummlyr-0.1.0/yummlyr/NEWS.md |only yummlyr-0.1.1/yummlyr/DESCRIPTION | 7 +++---- yummlyr-0.1.1/yummlyr/MD5 | 5 ++--- yummlyr-0.1.1/yummlyr/tests/testthat/test-search.R | 16 ++++++++-------- 4 files changed, 13 insertions(+), 15 deletions(-)
Title: Read GenAlEx Files Directly from Excel
Description: GenAlEx is a popular Excel macro for genetic analysis. The 'poppr'
R package allows import of GenAlEx formatted CSV data. This package serves as a
small 'poppr' add on for those who have trouble or simply do not want to export
their data into CSV format.
Author: Zhian N. Kamvar [cre, aut]
Maintainer: Zhian N. Kamvar <kamvarz@science.oregonstate.edu>
Diff between popprxl versions 0.1 dated 2015-07-19 and 0.1.1 dated 2015-11-24
popprxl-0.1.1/popprxl/DESCRIPTION | 18 ++++++++---- popprxl-0.1.1/popprxl/MD5 | 16 ++++++---- popprxl-0.1.1/popprxl/NAMESPACE | 2 - popprxl-0.1.1/popprxl/NEWS |only popprxl-0.1.1/popprxl/R/read_genalexcel.R | 17 ++++++++--- popprxl-0.1.1/popprxl/README.md | 5 +++ popprxl-0.1.1/popprxl/inst/files/geo_ex.xls |only popprxl-0.1.1/popprxl/inst/files/nancycats_extra_rows.xlsx |only popprxl-0.1.1/popprxl/man/read.genalexcel.Rd | 16 ++++++++-- popprxl-0.1.1/popprxl/tests/testthat/test-import.R | 14 ++++++++- popprxl-0.1/popprxl/inst/files/nancycats_extra_columns.xlsx |only 11 files changed, 66 insertions(+), 22 deletions(-)
Title: Inference of Species Associations from Co-Occurrence Data
Description: Infers species associations from community matrices. Uses local and (optional) regional-scale co-occurrence data by comparing observed partial correlation coefficients between species to those estimated from regional species distributions. Extends Gaussian graphical models to a null modeling framework. Provides interface to a variety of inverse covariance matrix estimation methods.
Author: Benjamin Blonder, Naia Morueta-Holme
Maintainer: Benjamin Blonder <bblonder@gmail.com>
Diff between netassoc versions 0.6.0 dated 2015-09-09 and 0.6.2 dated 2015-11-24
DESCRIPTION | 10 +++++----- MD5 | 18 ++++++++++-------- NAMESPACE | 5 +++-- R/make_netassoc_network.R | 29 ++++++++++++----------------- R/pairwise_association.R |only R/partial_correlation.R | 3 +-- R/plot.R | 4 ++-- man/make_netassoc_network.Rd | 34 +++++++++++++++++++++++----------- man/netassoc-package.Rd | 4 ++-- man/pairwise_association.Rd |only man/plot_netassoc_network.Rd | 4 ++-- 11 files changed, 60 insertions(+), 51 deletions(-)
Title: Statistical Methods for Analysing Multivariate Abundance Data
Description: A set of tools for displaying, modeling and analysing
multivariate abundance data in community ecology. See
'mvabund-package.Rd' for details of overall package organization.
The package is implemented with the Gnu Scientific Library
(http://www.gnu.org/software/gsl/) and Rcpp
(http://dirk.eddelbuettel.com/code/rcpp.html) R / C++ classes.
Author: Yi Wang, Ulrike Naumann, Stephen Wright, Dirk Eddelbuettel and David Warton
Maintainer: David Warton <David.Warton@unsw.edu.au>
Diff between mvabund versions 3.11.4 dated 2015-10-22 and 3.11.5 dated 2015-11-24
DESCRIPTION | 10 +++++----- MD5 | 22 +++++++++++----------- NAMESPACE | 2 ++ R/anova.manyany.R | 33 ++++++++------------------------- R/manyany.R | 45 +++++++++++++++++++++++++++++---------------- R/manyglm.R | 27 +++++++++++++++++---------- R/predict.manyglm.R | 3 ++- R/predict.traitglm.R | 6 +++++- R/residuals.manyglm.R | 9 +++++---- README.md | 5 +++-- man/anova.manyglm.Rd | 4 ++-- man/manyany.Rd | 9 ++++++++- 12 files changed, 97 insertions(+), 78 deletions(-)
Title: Tools for Data Handling and Analysis in Macroecology
Description: R functions for handling, processing, and analyzing geographic
data on species' distributions and environmental variables as well as species'
description and conservation information.
Author: Bruno Vilela & Fabricio Villalobos
Maintainer: Bruno Vilela <brunovilelasilva@hotmail.com>
Diff between letsR versions 2.3 dated 2015-09-17 and 2.4 dated 2015-11-24
DESCRIPTION | 15 +++--- MD5 | 84 +++++++++++++++++------------------ NAMESPACE | 3 - R/getcode.R | 5 +- R/letsR-package.R | 4 - man/IUCN.Rd | 4 - man/PAM.Rd | 4 - man/Phyllomedusa.Rd | 6 +- man/PresenceAbsence.Rd | 32 ++++++------- man/lets.addpoly.Rd | 7 +- man/lets.addvar.Rd | 9 ++- man/lets.classvar.Rd | 19 ++++--- man/lets.correl.Rd | 15 +++--- man/lets.distmat.Rd | 11 ++-- man/lets.field.Rd | 23 +++++---- man/lets.gridirizer.Rd | 3 - man/lets.iucn.Rd | 7 +- man/lets.iucn.ha.Rd | 7 +- man/lets.iucn.his.Rd | 5 +- man/lets.iucncont.Rd | 7 +- man/lets.maplizer.Rd | 17 +++---- man/lets.midpoint.Rd | 11 ++-- man/lets.overlap.Rd | 21 ++++---- man/lets.pamcrop.Rd | 5 +- man/lets.presab.Rd | 56 ++++++++++++----------- man/lets.presab.birds.Rd | 63 +++++++++++++------------- man/lets.presab.grid.Rd | 30 ++++++------ man/lets.presab.points.Rd | 16 +++--- man/lets.rangesize.Rd | 24 +++++----- man/lets.shFilter.Rd | 24 +++++----- man/lets.subsetPAM.Rd | 7 +- man/lets.summarizer.Rd | 15 +++--- man/lets.transf.Rd | 5 +- man/letsR-package.Rd | 44 +++++++++--------- man/plot.PresenceAbsence.Rd | 3 - man/print.PresenceAbsence.Rd | 2 man/print.summary.PresenceAbsence.Rd | 2 man/summary.PresenceAbsence.Rd | 2 man/temp.Rd | 10 ++-- tests/testthat/test-TimLucas.r | 2 tests/testthat/test-lets_iucn.R | 4 - tests/testthat/test-lets_iucn_ha.R | 6 +- tests/testthat/test-lets_iucn_his.R | 6 +- 43 files changed, 337 insertions(+), 308 deletions(-)
Title: Data Pre-Processing and Visualization Functions for
Classification
Description: Data preprocessing techniques for classification. Functions for normalization, handling of missing values,discretization, outlier detection, feature selection, and data visualization are included.
Author: Edgar Acuna and the CASTLE research group at The University of Puerto Rico-Mayaguez
Maintainer: Edgar Acuna <edgar.acuna@upr.edu>
Diff between dprep versions 3.0 dated 2015-11-19 and 3.0.2 dated 2015-11-24
dprep-3.0.2/dprep/DESCRIPTION | 8 ++++---- dprep-3.0.2/dprep/MD5 | 19 +++++++++---------- dprep-3.0.2/dprep/R/discretevar.R | 3 ++- dprep-3.0.2/dprep/R/midpoints1.R | 3 ++- dprep-3.0.2/dprep/man/arboleje1.Rd | 2 +- dprep-3.0.2/dprep/man/cvnaiveBayesd.Rd | 4 ++-- dprep-3.0.2/dprep/man/disc.mentr.Rd | 4 +++- dprep-3.0.2/dprep/man/dprep-package.Rd | 19 +++++++++++++++++-- dprep-3.0.2/dprep/man/mo3.Rd | 3 ++- dprep-3.0.2/dprep/src/Discrete.cpp | 3 ++- dprep-3.0/dprep/build |only 11 files changed, 44 insertions(+), 24 deletions(-)
Title: The Complex Multivariate Gaussian Distribution
Description: Various utilities for the complex multivariate Gaussian distribution.
Author: Robin K. S. Hankin
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between cmvnorm versions 1.0-1 dated 2015-02-09 and 1.0-3 dated 2015-11-24
DESCRIPTION | 6 +++--- MD5 | 16 +++++++++------- NAMESPACE | 14 +++++++++++++- R/cmvnorm.R | 31 +++++++++++++++++++++++++++++++ R/onloader.R |only build/vignette.rds |binary inst/doc/complicator.Rnw | 25 ++++++++++++++----------- inst/doc/complicator.pdf |binary man/var.Rd |only vignettes/complicator.Rnw | 25 ++++++++++++++----------- 10 files changed, 84 insertions(+), 33 deletions(-)
Title: Central Limit Theorem Experiments (Theoretical and Simulation)
Description: Central limit theorem experiments presented by data frames or plots. Functions include generating theoretical sample space, corresponding probability, and simulated results as well.
Author: Simiao Ye, Jingning Mei
Maintainer: Simiao Ye <simiao.ye@gmail.com>
Diff between clttools versions 1.1 dated 2015-08-25 and 1.2 dated 2015-11-24
DESCRIPTION | 8 ++--- MD5 | 4 +- R/clttools.R | 94 ++++++++++++----------------------------------------------- 3 files changed, 26 insertions(+), 80 deletions(-)
Title: Bayesian Model Averaging Library
Description: Bayesian model averaging for linear models with a wide choice of (customizable) priors. Built-in priors include coefficient priors (fixed, flexible and hyper-g priors), 5 kinds of model priors, moreover model sampling by enumeration or various MCMC approaches. Post-processing functions allow for inferring posterior inclusion and model probabilities, various moments, coefficient and predictive densities. Plotting functions available for posterior model size, MCMC convergence, predictive and coefficient densities, best models representation, BMA comparison.
Author: Martin Feldkircher and Stefan Zeugner
Maintainer: Stefan Zeugner <bms@zeugner.eu>
Diff between BMS versions 0.3.3 dated 2013-11-22 and 0.3.4 dated 2015-11-24
DESCRIPTION | 15 ++++----- MD5 | 43 +++++++++++++------------- NAMESPACE | 84 ++++++++++++++++++++++++++++++++++++++++++++++++++-- NEWS |only R/BMS-internal.R | 42 ++++++++++++++++++++++++++ R/bms.R | 40 +++++++++++++++++------- R/c.bma.R | 2 + R/estimates.bma.R | 4 +- R/info.bma.R | 4 +- R/z[.bma.R | 6 +-- R/z[.topmod.R | 4 +- R/zzz.R | 33 ++++++++++++++++++-- inst/CITATION | 32 +++++++++++++------ inst/doc/bms.Rnw | 2 - man/BMS-package.Rd | 6 +-- man/bma-class.Rd | 5 ++- man/bms.Rd | 20 +++++++++--- man/coef.bma.Rd | 5 +-- man/summary.bma.Rd | 3 - man/topmod-class.Rd | 3 + man/z[.bma.Rd | 15 ++++----- man/zlm-class.Rd | 8 ++++ vignettes/bms.Rnw | 2 - 23 files changed, 293 insertions(+), 85 deletions(-)