Title: Planing, Monitoring and Evaluating Oncological Phase 2 Studies
Description: Purpose of this package is it to plan, monitor and evaluate oncological phase II studies. In general this kind of studies are single-arm trials with planned interim analysis and binary endpoint. To meet the resulting requirements, the package provides functions to calculate and evaluate 'Simon's two-stage designs' and 'so-called' 'subset designs'. If you are unfamiliar with this package a good starting point is to take a closer look at the functions getSolutions() and getSolutionsSub1().
Author: Marius Wirths
Maintainer: Marius Wirths <wirths@imbi.uni-heidelberg.de>
Diff between OneArmPhaseTwoStudy versions 0.1.3 dated 2015-07-01 and 0.1.4 dated 2015-11-26
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- src/result.h | 52 ++++++++++++++++++++++++++++++++++++++++++++++++++++ src/resultsub1.h | 36 ++++++++++++++++++++++++++++++++++++ 4 files changed, 95 insertions(+), 7 deletions(-)
More information about OneArmPhaseTwoStudy at CRAN
Permanent link
Title: Direct, Chain and Average Equating Coefficients with Standard
Errors Using IRT Methods
Description: Computation of direct, chain and average (bisector) equating coefficients with standard errors using Item Response Theory (IRT) methods for dichotomous items.
Author: Michela Battauz
Maintainer: Michela Battauz <michela.battauz@uniud.it>
Diff between equateIRT versions 1.2 dated 2014-11-14 and 1.2-1 dated 2015-11-26
DESCRIPTION | 15 ++++++++------- MD5 | 15 +++++++++++---- NAMESPACE | 3 ++- build |only inst/NEWS | 11 ++--------- inst/doc |only man/equateIRT-package.Rd | 4 ++-- vignettes |only 8 files changed, 25 insertions(+), 23 deletions(-)
Title: Numerical Calibration of Proxy-Climate Relationships
Description: Bootstrapped response and correlation functions,
seasonal correlations and evaluation of reconstruction
skills for use in dendroclimatology and dendroecology.
Author: Christian Zang [aut, cre, cph, trl],
Franco Biondi [ctb, cph]
Maintainer: Christian Zang <christian.zang@wzw.tum.de>
Diff between treeclim versions 1.0.11 dated 2015-02-10 and 1.0.13 dated 2015-11-26
treeclim-1.0.11/treeclim/R/zzz.R |only treeclim-1.0.13/treeclim/DESCRIPTION | 11 treeclim-1.0.13/treeclim/MD5 | 100 - treeclim-1.0.13/treeclim/NAMESPACE | 4 treeclim-1.0.13/treeclim/R/RcppExports.R | 54 treeclim-1.0.13/treeclim/R/dcc.R | 686 ++++----- treeclim-1.0.13/treeclim/R/exclude_from.R | 94 - treeclim-1.0.13/treeclim/R/generics.R | 702 +++++----- treeclim-1.0.13/treeclim/R/gershunov.R | 352 ++--- treeclim-1.0.13/treeclim/R/ptest.R | 4 treeclim-1.0.13/treeclim/R/seascorr.R | 569 ++++---- treeclim-1.0.13/treeclim/R/tc_mfunc.R | 2 treeclim-1.0.13/treeclim/inst/CITATION | 6 treeclim-1.0.13/treeclim/inst/Changelog | 163 +- treeclim-1.0.13/treeclim/man/abbrev_name.Rd | 3 treeclim-1.0.13/treeclim/man/as_tcclimate.Rd | 3 treeclim-1.0.13/treeclim/man/check_months.Rd | 3 treeclim-1.0.13/treeclim/man/correct_continuous.Rd | 3 treeclim-1.0.13/treeclim/man/dcc.Rd | 27 treeclim-1.0.13/treeclim/man/eval_selection.Rd | 3 treeclim-1.0.13/treeclim/man/exclude_from.Rd | 3 treeclim-1.0.13/treeclim/man/format_month.Rd | 3 treeclim-1.0.13/treeclim/man/g_test.Rd | 5 treeclim-1.0.13/treeclim/man/init_boot_data.Rd | 3 treeclim-1.0.13/treeclim/man/is_continuous.Rd | 3 treeclim-1.0.13/treeclim/man/make_pmat.Rd | 3 treeclim-1.0.13/treeclim/man/make_range_list.Rd | 3 treeclim-1.0.13/treeclim/man/muc_clim.Rd | 3 treeclim-1.0.13/treeclim/man/muc_fake.Rd | 3 treeclim-1.0.13/treeclim/man/muc_spruce.Rd | 3 treeclim-1.0.13/treeclim/man/norw015.Rd | 3 treeclim-1.0.13/treeclim/man/norway_prec.Rd | 3 treeclim-1.0.13/treeclim/man/norway_temp.Rd | 3 treeclim-1.0.13/treeclim/man/ptest.Rd | 5 treeclim-1.0.13/treeclim/man/rt_prec.Rd | 3 treeclim-1.0.13/treeclim/man/rt_spruce.Rd | 5 treeclim-1.0.13/treeclim/man/rt_temp.Rd | 3 treeclim-1.0.13/treeclim/man/seascorr.Rd | 139 - treeclim-1.0.13/treeclim/man/skills.Rd | 21 treeclim-1.0.13/treeclim/man/spai020.Rd | 3 treeclim-1.0.13/treeclim/man/spain_prec.Rd | 3 treeclim-1.0.13/treeclim/man/spain_temp.Rd | 3 treeclim-1.0.13/treeclim/man/tc_correlation.Rd | 3 treeclim-1.0.13/treeclim/man/tc_design.Rd | 3 treeclim-1.0.13/treeclim/man/tc_mfunc.Rd | 3 treeclim-1.0.13/treeclim/man/tc_response.Rd | 3 treeclim-1.0.13/treeclim/man/treeclim-modifiers.Rd | 3 treeclim-1.0.13/treeclim/man/truncate_input.Rd | 3 treeclim-1.0.13/treeclim/src/Makevars | 1 treeclim-1.0.13/treeclim/src/Makevars.win | 2 treeclim-1.0.13/treeclim/src/RcppExports.cpp | 129 - treeclim-1.0.13/treeclim/tests/testthat/test_moving_windows.R |only 52 files changed, 1595 insertions(+), 1570 deletions(-)
Title: R Interface to SDMX Web Services
Description: Provides functions to retrieve data and metadata from providers
that disseminate data by means of SDMX web services.
SDMX (Statistical Data and Metadata eXchange) is a standard that
has been developed with the aim of simplifying the exchange of
statistical information.
More about the SDMX standard and the SDMX Web Services
can be found at: http://sdmx.org .
Author: Attilio Mattiocco, Diana Nicoletti, Gianpaolo Lopez, Banca d'Italia
Maintainer: Attilio Mattiocco <attilio.mattiocco@bancaditalia.it>
Diff between RJSDMX versions 1.4 dated 2015-07-22 and 1.5 dated 2015-11-26
DESCRIPTION | 6 +++--- MD5 | 21 +++++++++++---------- NAMESPACE | 1 + R/SdmxClient.R | 39 +++++++++++++++++++++++++++++++++------ R/TSConverter.R | 29 ++++++++++++++++++++++------- inst/java/SDMX.jar |binary man/RJSDMX-package.Rd | 7 ++++--- man/addProvider.Rd | 10 ++++------ man/getTimeSeriesRevisions.Rd | 20 ++++++++++++-------- man/getTimeSeriesTable.Rd |only man/sdmxHelp.Rd | 6 +++--- man/sdmxdf.Rd | 10 +++++----- 12 files changed, 98 insertions(+), 51 deletions(-)
Title: Easy Handling Discrete Time Markov Chains
Description: Functions and S4 methods to create and manage discrete time Markov chains (DTMC) more easily. In addition functions to perform statistical (fitting and drawing random variates) and probabilistic (analysis of DTMC proprieties) analysis are provided.
Author: Giorgio Alfredo Spedicato [aut,cre], Tae Seung Kang [aut], Sai Bhargav Yalamanchi [aut], Mildenberger Thoralf [ctb]
Maintainer: Giorgio Alfredo Spedicato <spedicato_giorgio@yahoo.it>
Diff between markovchain versions 0.4.2 dated 2015-08-24 and 0.4.3 dated 2015-11-26
markovchain-0.4.2/markovchain/inst/doc/BayesianInference.R |only markovchain-0.4.2/markovchain/inst/doc/BayesianInference.Rmd |only markovchain-0.4.2/markovchain/inst/doc/BayesianInference.pdf |only markovchain-0.4.2/markovchain/inst/doc/CTMC.R |only markovchain-0.4.2/markovchain/inst/doc/CTMC.Rmd |only markovchain-0.4.2/markovchain/inst/doc/CTMC.pdf |only markovchain-0.4.2/markovchain/tests/testthat/Rplots.pdf |only markovchain-0.4.2/markovchain/vignettes/BayesianInference.Rmd |only markovchain-0.4.2/markovchain/vignettes/CTMC.Rmd |only markovchain-0.4.2/markovchain/vignettes/jss.dtx |only markovchain-0.4.2/markovchain/vignettes/jsslogo.jpg |only markovchain-0.4.3/markovchain/ChangeLog | 4 markovchain-0.4.3/markovchain/DESCRIPTION | 8 markovchain-0.4.3/markovchain/MD5 | 51 - markovchain-0.4.3/markovchain/NEWS | 8 markovchain-0.4.3/markovchain/R/0_classesAndMethods.R | 45 + markovchain-0.4.3/markovchain/R/1_supplementaryPlot.R | 2 markovchain-0.4.3/markovchain/build/vignette.rds |binary markovchain-0.4.3/markovchain/data/blanden.rda |binary markovchain-0.4.3/markovchain/data/craigsendi.rda |binary markovchain-0.4.3/markovchain/data/holson.rda |binary markovchain-0.4.3/markovchain/data/preproglucacon.rda |binary markovchain-0.4.3/markovchain/data/rain.rda |binary markovchain-0.4.3/markovchain/inst/CITATION | 4 markovchain-0.4.3/markovchain/inst/doc/an_introduction_to_markovchain_package.R | 175 +++++- markovchain-0.4.3/markovchain/inst/doc/an_introduction_to_markovchain_package.Rnw | 278 +++++++++- markovchain-0.4.3/markovchain/inst/doc/an_introduction_to_markovchain_package.pdf |binary markovchain-0.4.3/markovchain/inst/doc/markovchainCrashIntro.pdf |binary markovchain-0.4.3/markovchain/man/markovchain-class.Rd | 2 markovchain-0.4.3/markovchain/man/markovchain-package.Rd | 4 markovchain-0.4.3/markovchain/tests/testthat/testPlot.R | 3 markovchain-0.4.3/markovchain/vignettes/an_introduction_to_markovchain_package.Rnw | 278 +++++++++- 32 files changed, 774 insertions(+), 88 deletions(-)
Title: Feature-Based Landscape Analysis of Continuous and Constraint
Optimization Problems
Description: Contains tools and features, which can be used for an exploratory
landscape analysis of continuous optimization problems. Those are able to
quantify rather complex properties, such as the global structure,
separability, etc., of continuous optimization problems.
Author: Pascal Kerschke [aut, cre],
Jan Dagefoerde [aut]
Maintainer: Pascal Kerschke <kerschke@uni-muenster.de>
Diff between flacco versions 1.0 dated 2015-10-28 and 1.1 dated 2015-11-26
flacco-1.0/flacco/R/createInitialDesign.R |only flacco-1.0/flacco/man/createInitialDesign.Rd |only flacco-1.0/flacco/tests/testthat/test-base-createInitialDesign.R |only flacco-1.1/flacco/DESCRIPTION | 7 flacco-1.1/flacco/MD5 | 77 +-- flacco-1.1/flacco/NAMESPACE | 4 flacco-1.1/flacco/NEWS |only flacco-1.1/flacco/R/calculateFeatures.R | 12 flacco-1.1/flacco/R/cm_findNearestPrototype.R | 9 flacco-1.1/flacco/R/createFeatureObject.R | 236 +++++----- flacco-1.1/flacco/R/createInitialSample.R |only flacco-1.1/flacco/R/feature_ela_local_search.R | 2 flacco-1.1/flacco/R/feature_gcm_barriertree.R | 3 flacco-1.1/flacco/R/feature_ic_infocontent.R | 4 flacco-1.1/flacco/R/plotBarrierTree2D.R | 8 flacco-1.1/flacco/R/plotBarrierTree3D.R | 2 flacco-1.1/flacco/R/plotCellMapping.R | 6 flacco-1.1/flacco/R/plotFeatureImportance.R | 4 flacco-1.1/flacco/R/plotInformationContent.R | 10 flacco-1.1/flacco/man/FeatureObject.Rd | 24 - flacco-1.1/flacco/man/computeGridCenters.Rd | 3 flacco-1.1/flacco/man/convertInitDesignToGrid.Rd | 3 flacco-1.1/flacco/man/createInitialSample.Rd |only flacco-1.1/flacco/man/featureList.Rd | 2 flacco-1.1/flacco/man/features.Rd | 19 flacco-1.1/flacco/man/findLinearNeighbours.Rd | 11 flacco-1.1/flacco/man/findNearestPrototype.Rd | 16 flacco-1.1/flacco/man/listAvailableFeatureSets.Rd | 2 flacco-1.1/flacco/man/measureTime.Rd | 2 flacco-1.1/flacco/man/plotBarrierTree2D.Rd | 4 flacco-1.1/flacco/man/plotBarrierTree3D.Rd | 4 flacco-1.1/flacco/man/plotCellMapping.Rd | 2 flacco-1.1/flacco/man/plotFeatureImportance.Rd | 10 flacco-1.1/flacco/man/plotInformationContent.Rd | 12 flacco-1.1/flacco/tests/test-features.R | 14 flacco-1.1/flacco/tests/test-general.R | 5 flacco-1.1/flacco/tests/testthat/Rplots.pdf |binary flacco-1.1/flacco/tests/testthat/test-base-createFeatureObject.R | 20 flacco-1.1/flacco/tests/testthat/test-base-createInitialSample.R |only flacco-1.1/flacco/tests/testthat/test-base-printFeatureObject.R | 33 + flacco-1.1/flacco/tests/testthat/test-calculateFeatures.R | 3 flacco-1.1/flacco/tests/testthat/test-gcm-BarrierTrees.R | 4 flacco-1.1/flacco/tests/testthat/test-plot-plotBarrierTree3D.R | 2 43 files changed, 336 insertions(+), 243 deletions(-)
Title: Tools for Collecting Social Media Data and Generating Networks
for Analysis
Description: A suite of tools for collecting and constructing networks from social media data. Provides easy-to-use functions for collecting data across popular platforms (Instagram, Facebook, Twitter, and YouTube) and generating different types of networks for analysis.
Author: Timothy Graham & Robert Ackland
Maintainer: Timothy Graham <timothy.graham3@uq.net.au>
Diff between SocialMediaLab versions 0.18.0 dated 2015-11-15 and 0.19.0 dated 2015-11-26
DESCRIPTION | 8 ++++---- MD5 | 14 ++++++++------ NAMESPACE | 5 ++++- R/CollectDataFacebook.R | 29 ++++++++++++++--------------- R/CollectDataInstagram.R | 6 ++++-- R/CreateActorNetwork.list.R | 7 +++++++ R/CreateEgoNetwork.R |only man/CollectDataInstagram.Rd | 2 +- man/CreateEgoNetwork.Rd |only 9 files changed, 42 insertions(+), 29 deletions(-)
More information about SocialMediaLab at CRAN
Permanent link
Title: Search 'Vertnet', a 'Database' of Vertebrate Specimen Records
Description: Retrieve, map and summarize data from the 'VertNet.org' archives.
Functions allow searching by many parameters, including 'taxonomic' names,
places, and dates. In addition, there is an interface for conducting spatially
delimited searches, and another for requesting large 'datasets' via email.
Author: Scott Chamberlain [aut, cre], Chris Ray [aut], Vijay Barve [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rvertnet versions 0.3.4 dated 2015-09-16 and 0.4.0 dated 2015-11-26
rvertnet-0.3.4/rvertnet/inst/ignore |only rvertnet-0.4.0/rvertnet/DESCRIPTION | 9 rvertnet-0.4.0/rvertnet/MD5 | 51 ++--- rvertnet-0.4.0/rvertnet/NAMESPACE | 16 + rvertnet-0.4.0/rvertnet/R/bigsearch.R | 6 rvertnet-0.4.0/rvertnet/R/rvertnet-package.R | 6 rvertnet-0.4.0/rvertnet/R/searchbyterm.R | 14 + rvertnet-0.4.0/rvertnet/R/vertdump.R |only rvertnet-0.4.0/rvertnet/R/vertmap.R | 62 +++--- rvertnet-0.4.0/rvertnet/R/zzz.R | 15 + rvertnet-0.4.0/rvertnet/README.md | 126 ++++++------- rvertnet-0.4.0/rvertnet/man/bigsearch.Rd | 12 - rvertnet-0.4.0/rvertnet/man/dump.Rd |only rvertnet-0.4.0/rvertnet/man/rvertnet-defunct.Rd | 2 rvertnet-0.4.0/rvertnet/man/rvertnet-package.Rd | 11 - rvertnet-0.4.0/rvertnet/man/searchbyterm.Rd | 2 rvertnet-0.4.0/rvertnet/man/spatialsearch.Rd | 4 rvertnet-0.4.0/rvertnet/man/vert_id.Rd | 4 rvertnet-0.4.0/rvertnet/man/vertavailablemaps-defunct.Rd | 2 rvertnet-0.4.0/rvertnet/man/vertlocations-defunct.Rd | 2 rvertnet-0.4.0/rvertnet/man/vertmap.Rd | 19 + rvertnet-0.4.0/rvertnet/man/vertoccurrence-defunct.Rd | 2 rvertnet-0.4.0/rvertnet/man/vertoccurrencecount-defunct.Rd | 2 rvertnet-0.4.0/rvertnet/man/vertproviders-defunct.Rd | 2 rvertnet-0.4.0/rvertnet/man/vertsearch.Rd | 4 rvertnet-0.4.0/rvertnet/man/vertsummary.Rd | 4 rvertnet-0.4.0/rvertnet/man/verttaxa-defunct.Rd | 2 rvertnet-0.4.0/rvertnet/tests/testthat/test-searchbyterm.R | 19 + 28 files changed, 242 insertions(+), 156 deletions(-)
Title: A Simple Data Science Challenge System
Description: A simple data science challenge system using R Markdown and Dropbox <https://www.dropbox.com/>.
It requires no network configuration, does not depend on external platforms
like e.g. Kaggle <https://www.kaggle.com/> and can be easily installed on a personal computer.
Author: Adrien Todeschini [aut, cre],
Robin Genuer [ctb]
Maintainer: Adrien Todeschini <adrien.todeschini@gmail.com>
Diff between rchallenge versions 1.1 dated 2015-05-17 and 1.1.1 dated 2015-11-26
rchallenge-1.1.1/rchallenge/DESCRIPTION | 17 - rchallenge-1.1.1/rchallenge/MD5 | 90 ++------ rchallenge-1.1.1/rchallenge/NAMESPACE | 16 + rchallenge-1.1.1/rchallenge/R/data.r | 2 rchallenge-1.1.1/rchallenge/R/plots.r | 6 rchallenge-1.1.1/rchallenge/R/rchallenge.r |only rchallenge-1.1.1/rchallenge/R/update.r | 9 rchallenge-1.1.1/rchallenge/README.md | 138 ++++++------- rchallenge-1.1.1/rchallenge/inst/template/challenge_en.rmd | 28 +- rchallenge-1.1.1/rchallenge/inst/template/challenge_fr.rmd | 35 ++- rchallenge-1.1.1/rchallenge/man/compute_metrics.Rd | 7 rchallenge-1.1.1/rchallenge/man/countdown.Rd | 2 rchallenge-1.1.1/rchallenge/man/data_partition.Rd | 6 rchallenge-1.1.1/rchallenge/man/data_split.Rd | 2 rchallenge-1.1.1/rchallenge/man/german.Rd | 18 - rchallenge-1.1.1/rchallenge/man/get_best.Rd | 2 rchallenge-1.1.1/rchallenge/man/get_data.Rd | 2 rchallenge-1.1.1/rchallenge/man/glyphicon.Rd | 2 rchallenge-1.1.1/rchallenge/man/html_img.Rd | 2 rchallenge-1.1.1/rchallenge/man/last_update.Rd | 2 rchallenge-1.1.1/rchallenge/man/new_challenge.Rd | 2 rchallenge-1.1.1/rchallenge/man/new_team.Rd | 2 rchallenge-1.1.1/rchallenge/man/plot_activity.Rd | 6 rchallenge-1.1.1/rchallenge/man/plot_history.Rd | 6 rchallenge-1.1.1/rchallenge/man/print_leaderboard.Rd | 2 rchallenge-1.1.1/rchallenge/man/print_readerr.Rd | 2 rchallenge-1.1.1/rchallenge/man/publish.Rd | 8 rchallenge-1.1.1/rchallenge/man/rchallenge-package.Rd |only rchallenge-1.1.1/rchallenge/man/store_new_submissions.Rd | 6 rchallenge-1.1.1/rchallenge/man/str_rank.Rd | 2 rchallenge-1.1.1/rchallenge/man/update_rank_diff.Rd | 2 rchallenge-1.1/rchallenge/inst/staticdocs |only rchallenge-1.1/rchallenge/inst/web |only 33 files changed, 215 insertions(+), 209 deletions(-)
Title: Power and Sample-Size Distribution of 2-Stage Bioequivalence
Studies
Description: Functions to obtain the operational characteristics of
bioequivalence studies with 2-stage designs via simulations
- Contains a function to calculate power and sample-size distribution
of 2-stage bioequivalence (BE) studies with a 2x2 crossover design
according to Potvin et al. / Montague et al. modified to include a
futility Nmax and modified to do the sample size estimation step
with PE and mse of stage 1.
- Contains further a function with the modifications according to
Karalis & Macheras which use both point estimate (PE) and mse from stage 1
also for the power monitoring steps.
- The third function power.2stage.fC() calculates power and sample-size
distribution of 2-stage BE studies with a futility criterion
for the PE or CI of T/R from stage 1.
- The fourth function power.2stage.GS() calculates power of non-adaptive
group sequential (2-stage) BE studies.
- The fifth function power.2stage.p() calculates power and sample size
distribution of 2-stage BE studies with 2 parallel groups.
This function has a sibling power.2stage.pAF(), which performs exactly as
described in A.Fuglsang 2014
- Another function power.2stage.ssr() allows the power calculation
for 2-stage studies with (blinded) interim sample size re-estimation.
Author: Detlew Labes [aut, cre],
Helmut Schuetz [ctb]
Maintainer: Detlew Labes <DetlewLabes@gmx.de>
Diff between Power2Stage versions 0.4-2 dated 2015-07-17 and 0.4-3 dated 2015-11-26
DESCRIPTION | 10 +-- MD5 | 36 ++++++------ NAMESPACE | 1 NEWS | 20 +++++- R/power.R | 126 +++++++++++++++++++++++++++++-------------- R/power_2stage.R | 32 ++++++++-- R/power_2stage_GS.R | 2 R/power_2stage_KM.R | 10 +-- R/power_2stage_SSR.R | 2 R/power_2stage_fC.R | 75 +++++++++++++++++-------- R/power_2stage_parallel.R | 2 R/power_2stage_parallel_AF.R | 2 R/print_pwrtsd_s3.R | 13 +++- man/power.2stage.GS.Rd | 11 +-- man/power.2stage.KM.Rd | 8 -- man/power.2stage.Rd | 19 ++---- man/power.2stage.fC.Rd | 30 ++++++---- man/power.2stage.p.Rd | 10 +-- man/power.2stage.ssr.Rd | 9 --- 19 files changed, 260 insertions(+), 158 deletions(-)
Title: Solve Systems of Nonlinear Equations
Description: Solve a system of nonlinear equations using a Broyden or a Newton method
with a choice of global strategies such as line search and trust region.
There are options for using a numerical or user supplied Jacobian,
for specifying a banded numerical Jacobian and for allowing
a singular or ill-conditioned Jacobian.
Author: Berend Hasselman
Maintainer: Berend Hasselman <bhh@xs4all.nl>
Diff between nleqslv versions 2.9 dated 2015-09-06 and 2.9.1 dated 2015-11-26
DESCRIPTION | 8 ++++---- MD5 | 10 ++++++---- NEWS | 5 +++++ R/nleqslv.R | 16 +++++++++++----- man/nleqslv.Rd | 8 ++++---- tests/control-try.R |only tests/control-try.Rout.save |only 7 files changed, 30 insertions(+), 17 deletions(-)
Title: Machine Learning in R
Description: Interface to a large number of classification and regression
techniques, including machine-readable parameter descriptions. There is
also an experimental extension for survival analysis, clustering and
general, example-specific cost-sensitive learning. Generic resampling,
including cross-validation, bootstrapping and subsampling. Hyperparameter
tuning with modern optimization techniques, for single- and multi-objective
problems. Filter and wrapper methods for feature selection. Extension of
basic learners with additional operations common in machine learning, also
allowing for easy nested resampling. Most operations can be parallelized.
Author: Bernd Bischl [aut, cre],
Michel Lang [aut],
Jakob Richter [aut],
Jakob Bossek [aut],
Leonard Judt [aut],
Tobias Kuehn [aut],
Erich Studerus [aut],
Lars Kotthoff [aut],
Zachary Jones [ctb]
Maintainer: Bernd Bischl <bernd_bischl@gmx.net>
Diff between mlr versions 2.5 dated 2015-11-20 and 2.6 dated 2015-11-26
DESCRIPTION | 6 - MD5 | 78 +++++++++++--------- NAMESPACE | 6 + NEWS | 12 +++ R/RLearner_classif_LiblineaRL1L2SVC.R | 2 R/RLearner_classif_LiblineaRL1LogReg.R | 4 - R/RLearner_classif_LiblineaRL2L1SVC.R | 2 R/RLearner_classif_LiblineaRL2LogReg.R | 4 - R/RLearner_classif_LiblineaRL2SVC.R | 2 R/RLearner_classif_LiblineaRMultiClassSVC.R | 2 R/RLearner_classif_ranger.R | 8 +- R/RLearner_classif_rknn.R | 2 R/RLearner_cluster_Cobweb.R |only R/RLearner_cluster_kmeans.R | 7 + R/RLearner_regr_LiblineaRL2L1SVR.R | 2 R/RLearner_regr_LiblineaRL2L2SVR.R | 2 R/RLearner_regr_glmboost.R |only R/RLearner_regr_glmnet.R | 5 - R/RLearner_regr_lm.R | 6 - R/RLearner_regr_ranger.R | 4 - R/RLearner_regr_rknn.R | 4 - R/RLearner_surv_ranger.R | 4 - R/ResampleDesc.R | 2 R/Task_operators.R | 31 ++++++-- R/getResampleExtract.R | 10 +- R/plotLearnerPrediction.R | 4 - inst/doc/mlr.html | 4 - man/getTaskClassLevels.Rd | 3 man/getTaskFormula.Rd | 3 man/getTaskTargetNames.Rd | 3 man/getTaskTargets.Rd | 7 + tests/testthat/helper_objects.R | 74 ------------------- tests/testthat/test_base_TuneWrapper.R | 2 tests/testthat/test_base_measures.R | 93 ++++++++++++++++++++++--- tests/testthat/test_base_multilabel.R | 13 +++ tests/testthat/test_base_plotViperCharts.R | 33 ++++---- tests/testthat/test_base_relativeOverfitting.R | 2 tests/testthat/test_cluster_Cobweb.R |only tests/testthat/test_cluster_kmeans.R | 14 +++ tests/testthat/test_regr_glmboost.R |only tests/testthat/test_regr_glmnet.R | 12 +++ tests/testthat/test_regr_lm.R | 2 42 files changed, 280 insertions(+), 194 deletions(-)
Title: General-to-Specific (GETS) Modelling and Indicator Saturation
Methods
Description: Automated multi-path General-to-Specific (GETS) modelling of the mean and variance of a regression, and indicator saturation methods for detecting and testing for structural breaks in the mean.
Author: Felix Pretis, James Reade, Genaro Sucarrat
Maintainer: Genaro Sucarrat <genaro.sucarrat@bi.no>
Diff between gets versions 0.2 dated 2014-12-22 and 0.3 dated 2015-11-26
gets-0.2/gets/R/skewness.test.R |only gets-0.2/gets/man/skewness.test.Rd |only gets-0.3/gets/DESCRIPTION | 10 +- gets-0.3/gets/MD5 | 63 +++++++----- gets-0.3/gets/NAMESPACE | 6 + gets-0.3/gets/NEWS | 34 ++++++ gets-0.3/gets/R/arx.R | 57 ++++++++--- gets-0.3/gets/R/biascorr.R |only gets-0.3/gets/R/getsm.R | 73 +++++++++++--- gets-0.3/gets/R/getsv.R | 5 - gets-0.3/gets/R/iim.R |only gets-0.3/gets/R/isat.R | 172 +++++++++++++++++++++++----------- gets-0.3/gets/R/isattest.R |only gets-0.3/gets/R/isatvar.R | 178 ++++++++++++++++++++++++++++++++++-- gets-0.3/gets/R/logLik.arx.R |only gets-0.3/gets/R/plot.arx.R | 149 +++++++++++++++--------------- gets-0.3/gets/R/plot.gets.R | 45 ++++++--- gets-0.3/gets/R/print.arx.R | 55 +++++++++-- gets-0.3/gets/R/print.gets.R | 3 gets-0.3/gets/R/sim.R |only gets-0.3/gets/R/tim.R |only gets-0.3/gets/man/arx.Rd | 14 +- gets-0.3/gets/man/biascorr.Rd |only gets-0.3/gets/man/coef.arx.Rd | 18 ++- gets-0.3/gets/man/coef.gets.Rd | 8 - gets-0.3/gets/man/diagnostics.Rd | 1 gets-0.3/gets/man/dropvar.Rd | 5 - gets-0.3/gets/man/eqwma.Rd | 1 gets-0.3/gets/man/gets-package.Rd | 4 gets-0.3/gets/man/getsm.Rd | 1 gets-0.3/gets/man/hpdata.Rd | 2 gets-0.3/gets/man/iim.Rd |only gets-0.3/gets/man/info.criterion.Rd | 5 - gets-0.3/gets/man/isat.Rd | 38 +++++-- gets-0.3/gets/man/isattest.Rd |only gets-0.3/gets/man/isatvar.Rd | 63 +++++++----- gets-0.3/gets/man/jb.test.Rd | 5 - gets-0.3/gets/man/ols.Rd | 9 + 38 files changed, 739 insertions(+), 285 deletions(-)
Title: Circular Visualization
Description: Circular layout is an efficient way for the visualization of huge
amounts of information. Here the circlize package provides an implementation
of circular layout generation in R as well as an enhancement of available
software. The flexibility of this package is based on the usage of low-level
graphics functions such that self-defined high-level graphics can be easily
implemented by users for specific purposes. Together with the seamless
connection between the powerful computational and visual environment in R,
circlize gives users more convenience and freedom to design figures for
better understanding complex patterns behind multi-dimensional data.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu@dkfz.de>
Diff between circlize versions 0.3.2 dated 2015-10-21 and 0.3.3 dated 2015-11-26
DESCRIPTION | 10 - MD5 | 119 +++++++++++----------- NAMESPACE | 4 NEWS | 9 + R/genomic.R | 58 +++++++++- R/plot.R | 101 ++++++++++++++++++ R/utils.R | 95 ++++++++++++++++- inst/doc/circlize.R | 6 - inst/doc/circlize.Rnw | 11 +- inst/doc/circlize.pdf |binary inst/doc/circular_phylogenetic_tree.pdf |binary inst/doc/circular_visualization_of_matrix.pdf |binary inst/doc/genomic_plot.pdf |binary inst/doc/interesting_graphics.pdf |binary inst/doc/visualize_relations_by_chord_diagram.pdf |binary man/chordDiagramFromDataFrame.rd | 27 ++-- man/chordDiagramFromMatrix.rd | 31 +++-- man/circlize-package.rd | 5 man/circlize.rd | 5 man/circos.axis.rd | 7 - man/circos.clear.rd | 5 man/circos.dendrogram.rd | 2 man/circos.genomicDensity.rd | 2 man/circos.genomicInitialize.rd | 2 man/circos.genomicLines.rd | 4 man/circos.genomicPoints.rd | 4 man/circos.genomicPosTransformLines.rd | 2 man/circos.genomicRainfall.rd | 2 man/circos.genomicText.rd | 2 man/circos.genomicTrack.rd | 5 man/circos.genomicTrackPlotRegion.rd | 9 + man/circos.initialize.rd | 2 man/circos.initializeWithIdeogram.rd | 8 - man/circos.lines.rd | 4 man/circos.link.rd | 12 +- man/circos.par.rd | 21 ++- man/circos.points.rd | 5 man/circos.rect.rd | 5 man/circos.segments.rd | 5 man/circos.track.rd | 5 man/circos.trackHist.rd | 4 man/circos.trackLines.rd | 7 + man/circos.trackPlotRegion.rd | 15 +- man/circos.trackPoints.rd | 5 man/circos.trackText.rd | 5 man/circos.update.rd | 5 man/circos.updatePlotRegion.rd | 5 man/circos.xaxis.rd |only man/circos.yaxis.rd |only man/col2value.rd |only man/genomicDensity.rd | 6 - man/getI.rd | 5 man/highlight.sector.rd | 2 man/posTransform.default.rd | 2 man/posTransform.text.rd | 2 man/rainfallTransform.rd | 7 - man/rand_color.rd | 5 man/read.chromInfo.rd | 9 + man/read.cytoband.rd | 4 man/show.index.rd | 5 vignettes/circlize.Rnw | 11 +- vignettes/src/intro-11-axis.R | 14 ++ 62 files changed, 543 insertions(+), 169 deletions(-)
Title: A Compression Format Optimized for the Web
Description: A lossless compressed data format that uses a combination of the LZ77
algorithm and Huffman coding. Brotli is similar in speed to deflate (gzip) but
offers more dense compression.
Author: Jeroen Ooms [aut, cre],
Google, Inc [aut, cph] (Brotli C++ library)
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Diff between brotli versions 0.3 dated 2015-10-06 and 0.4 dated 2015-11-26
DESCRIPTION | 10 MD5 | 86 - build/vignette.rds |binary inst/doc/benchmarks.R |only inst/doc/benchmarks.Rmd |only inst/doc/benchmarks.html |only src/dec/bit_reader.c | 21 src/dec/bit_reader.h | 257 ++-- src/dec/decode.c | 2294 ++++++++++++++++++++++++++--------------- src/dec/decode.h | 26 src/dec/dictionary.h | 2 src/dec/huffman.c | 41 src/dec/huffman.h | 24 src/dec/port.h | 91 + src/dec/prefix.h | 4 src/dec/state.c | 106 + src/dec/state.h | 96 + src/dec/streams.c | 6 src/dec/streams.h | 2 src/dec/types.h | 27 src/enc/backward_references.cc | 120 +- src/enc/backward_references.h | 2 src/enc/block_splitter.cc | 71 - src/enc/brotli_bit_stream.cc | 72 - src/enc/cluster.h | 25 src/enc/command.h | 53 src/enc/context.h | 5 src/enc/encode.cc | 24 src/enc/encode.h | 11 src/enc/encode_parallel.cc | 39 src/enc/entropy_encode.cc | 53 src/enc/hash.h | 164 +- src/enc/histogram.cc | 2 src/enc/histogram.h | 4 src/enc/literal_cost.cc | 30 src/enc/metablock.cc | 24 src/enc/port.h | 7 src/enc/prefix.h | 7 src/enc/ringbuffer.h | 20 src/enc/streams.cc | 11 src/enc/streams.h | 3 src/enc/transform.h | 5 src/enc/types.h | 16 src/enc/utf8_util.cc | 10 src/enc/write_bits.h | 7 vignettes/benchmarks.Rmd |only 46 files changed, 2359 insertions(+), 1519 deletions(-)