Title: A Toolbox for Writing 'swirl' Courses
Description: A set of tools for writing and sharing interactive courses
to be used with swirl.
Author: Sean Kross [aut, cre],
Nick Carchedi [aut],
Chih-Cheng Liang [ctb],
Wush Wu [ctb]
Maintainer: Sean Kross <sean@seankross.com>
Diff between swirlify versions 0.4 dated 2015-11-25 and 0.4.1 dated 2015-11-29
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Title: Interface to the 'Handsontable.js' Library
Description: An R interface to the 'Handsontable' JavaScript library, which is a
minimalist Excel-like data grid editor.
Author: Jonathan Owen [aut, cre, cph],
Jeff Allen [ctb],
Yihui Xie [ctb],
Enzo Martoglio [ctb],
Warpechowski Marcin [ctb, cph] (Handsontable.js library),
Handsoncode sp. z o.o. [ctb, cph] (Handsontable.js library),
Aisch Gregor [ctb, cph] (Chroma.js library),
Wood Tim [ctb, cph] (Moment.js library),
Chernev Iskren [ctb, cph] (Moment.js library),
Moment.js contributors [ctb, cph] (Moment.js library),
Bushell David [ctb, cph] (Pikaday.js library),
jQuery Foundation [ctb, cph] (jQuery.js library),
Splunk Inc [ctb, cph] (Sparkline.js library)
Maintainer: Jonathan Owen <jonathanro@gmail.com>
Diff between rhandsontable versions 0.2.1 dated 2015-09-15 and 0.2.3 dated 2015-11-29
DESCRIPTION | 9 +-- MD5 | 48 ++++++++--------- NAMESPACE | 2 NEWS | 9 +++ R/rhandsontable.R | 39 +++++++------- inst/doc/intro_rhandsontable.Rmd | 2 inst/doc/intro_rhandsontable.html | 100 ++++++++++++++++++------------------ inst/htmlwidgets/rhandsontable.js | 18 +++++- inst/htmlwidgets/rhandsontable.yaml | 2 man/hot_cell.Rd | 2 man/hot_col.Rd | 6 +- man/hot_cols.Rd | 2 man/hot_context_menu.Rd | 2 man/hot_heatmap.Rd | 4 - man/hot_rows.Rd | 2 man/hot_table.Rd | 6 +- man/hot_to_r.Rd | 2 man/hot_validate_character.Rd | 2 man/hot_validate_numeric.Rd | 4 - man/rHandsontableOutput.Rd | 4 - man/renderRHandsontable.Rd | 8 +- man/rhandsontable-exports.Rd | 2 man/rhandsontable-package.Rd | 2 man/rhandsontable.Rd | 2 vignettes/intro_rhandsontable.Rmd | 2 25 files changed, 156 insertions(+), 125 deletions(-)
Title: Data Visualization Tools for Statistical Analysis Results
Description: Unified plotting tools for statistics commonly used, such as GLM,
time series, PCA families, clustering and survival analysis. The package offers
a single plotting interface for these analysis results and plots in a unified
style using 'ggplot2'.
Author: Masaaki Horikoshi <sinhrks@gmail.com> and Yuan Tang
<terrytangyuan@gmail.com>
Maintainer: Masaaki Horikoshi <sinhrks@gmail.com>
Diff between ggfortify versions 0.0.4 dated 2015-10-04 and 0.1.0 dated 2015-11-29
DESCRIPTION | 27 ++- MD5 | 256 ++++++++++++++++++++---------------- NAMESPACE | 13 + R/base_fortify_list.R | 39 ++++- R/base_fortify_ts.R | 7 R/fortify_MSwM.R | 3 R/fortify_base.R | 6 R/fortify_changepoint.R | 4 R/fortify_cluster.R | 10 - R/fortify_forecast.R | 6 R/fortify_glmnet.R |only R/fortify_stats.R | 22 +-- R/fortify_stats_density.R | 1 R/fortify_stats_lm.R | 34 ++-- R/fortify_surv.R | 15 +- R/geom.R | 75 +++++++--- R/ggfortify.R | 2 R/plotlib.R | 145 ++++++++++++++++++-- R/tslib.R | 10 - R/util.R | 25 +++ build/vignette.rds |binary inst/doc/basics.R | 53 +++++++ inst/doc/basics.Rmd | 119 +++++++++++++++- inst/doc/basics.html | 145 +++++++++++++++++--- inst/doc/intro_Chinese.R |only inst/doc/intro_Chinese.Rmd |only inst/doc/intro_Chinese.html |only inst/doc/plot_dist.R |only inst/doc/plot_dist.Rmd |only inst/doc/plot_dist.html |only inst/doc/plot_lm.R |only inst/doc/plot_lm.Rmd |only inst/doc/plot_lm.html |only inst/doc/plot_pca.R |only inst/doc/plot_pca.Rmd |only inst/doc/plot_pca.html |only inst/doc/plot_surv.R |only inst/doc/plot_surv.Rmd |only inst/doc/plot_surv.html |only inst/doc/plot_ts.R |only inst/doc/plot_ts.Rmd |only inst/doc/plot_ts.html |only man/apply_facets.Rd | 2 man/autoplot.MSM.lm.Rd | 2 man/autoplot.aareg.Rd | 2 man/autoplot.acf.Rd | 2 man/autoplot.breakpoints.Rd | 2 man/autoplot.cpt.Rd | 2 man/autoplot.cv.glmnet.Rd |only man/autoplot.density.Rd | 2 man/autoplot.forecast.Rd | 2 man/autoplot.ggmultiplot.Rd |only man/autoplot.ggplot.Rd |only man/autoplot.glmnet.Rd |only man/autoplot.kmeans.Rd | 2 man/autoplot.list.Rd | 13 + man/autoplot.lm.Rd | 2 man/autoplot.matrix.Rd | 2 man/autoplot.pca_common.Rd | 2 man/autoplot.spec.Rd | 2 man/autoplot.stepfun.Rd | 2 man/autoplot.survfit.Rd | 4 man/autoplot.ts.Rd | 2 man/autoplot.tsmodel.Rd | 2 man/autoplot.varprd.Rd | 2 man/cbind_wraps.Rd | 2 man/check_names.Rd | 2 man/confint.acf.Rd | 2 man/deprecate.warning.Rd | 2 man/fitted.ar.Rd | 2 man/fortify.MSM.lm.Rd | 2 man/fortify.aareg.Rd | 2 man/fortify.acf.Rd | 2 man/fortify.cpt.Rd | 2 man/fortify.cv.glmnet.Rd |only man/fortify.density.Rd | 2 man/fortify.dist.Rd | 2 man/fortify.ets.Rd | 2 man/fortify.factanal.Rd | 2 man/fortify.forecast.Rd | 2 man/fortify.glmnet.Rd |only man/fortify.kmeans.Rd | 2 man/fortify.lfda.Rd | 4 man/fortify.list.Rd | 2 man/fortify.matrix.Rd | 2 man/fortify.prcomp.Rd | 2 man/fortify.spec.Rd | 2 man/fortify.stepfun.Rd | 2 man/fortify.survfit.Rd | 2 man/fortify.table.Rd | 2 man/fortify.ts.Rd | 2 man/fortify.tsmodel.Rd | 2 man/fortify.varprd.Rd | 2 man/fortify_base.Rd | 2 man/geom_confint.Rd | 2 man/geom_factory.Rd | 2 man/get.dtindex.Rd | 2 man/get.dtindex.continuous.Rd | 2 man/get.layout.Rd | 2 man/get_geom_function.Rd | 2 man/ggcpgram.Rd | 2 man/ggdistribution.Rd | 2 man/ggfortify.Rd | 2 man/ggfreqplot.Rd | 2 man/gglagplot.Rd | 2 man/ggmultiplot-class.Rd | 31 ++++ man/ggtsdiag.Rd | 2 man/infer.Rd | 2 man/is.univariate.Rd | 2 man/is_derived_from.Rd |only man/plot_confint.Rd | 2 man/plot_label.Rd | 15 +- man/plus-ggmultiplot-ANY-method.Rd | 2 man/post_autoplot.Rd | 2 man/post_fortify.Rd | 2 man/print-ggmultiplot-method.Rd | 2 man/rbind_ts.Rd | 2 man/residuals.ar.Rd | 2 man/show-ggmultiplot-method.Rd | 2 man/support_autoplot.Rd |only man/unscale.Rd | 2 tests/test-all.R | 2 tests/testthat/Rplots.pdf |only tests/testthat/test-MSwM.R |only tests/testthat/test-base-infer.R | 24 ++- tests/testthat/test-base.R | 32 ++++ tests/testthat/test-base_ts.R | 4 tests/testthat/test-changepoint.R | 8 - tests/testthat/test-cluster.R | 12 + tests/testthat/test-forecast.R | 27 ++- tests/testthat/test-glmnet.R |only tests/testthat/test-plotlib.R | 240 +++++++++++++++++++++++++++++---- tests/testthat/test-stats-density.R |only tests/testthat/test-stats-lm.R | 2 tests/testthat/test-stats.R | 109 ++++++--------- tests/testthat/test-surv.R | 43 +++++- tests/testthat/test-ts.R | 47 ++++++ tests/testthat/test-tslib.R | 23 +++ tests/testthat/test-util.R | 2 tests/testthat/test-vars.R | 11 + tests/testthat/test_lint.R |only vignettes/basics.Rmd | 119 +++++++++++++++- vignettes/intro_Chinese.Rmd |only vignettes/plot_dist.Rmd |only vignettes/plot_lm.Rmd |only vignettes/plot_pca.Rmd |only vignettes/plot_surv.Rmd |only vignettes/plot_ts.Rmd |only 148 files changed, 1450 insertions(+), 471 deletions(-)
Title: Estimation of the Number of Fatalities from Carcass Searches
Description: The number of bird or bat fatalities from collisions with buildings, towers or wind energy turbines can be estimated based on carcass searches and experimentally assessed carcass persistence times and searcher efficiency. Functions for estimating the probability that a bird or bat that died is found by a searcher are provided. Further functions calculate the posterior distribution of the number of fatalities based on the number of carcasses found and the estimated detection probability.
Author: Fraenzi Korner-Nievergelt, Ivo Niermann, Oliver Behr, Matthew A. Etterson, Robert Brinkmann, Pius Korner, Barbara Hellriegel, Tobias Roth, Manuela M. P. Huso, Dan Dalthorp
Maintainer: Fraenzi Korner-Nievergelt <fraenzi.korner@oikostat.ch>
Diff between carcass versions 1.4 dated 2015-04-20 and 1.5 dated 2015-11-29
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NAMESPACE | 2 +- R/estimateN.r | 17 ++++++++++------- man/search.efficiency.Rd | 4 ++-- 5 files changed, 21 insertions(+), 18 deletions(-)
Title: Interface to Unidata netCDF Data Files
Description: This is deprecated and will be removed
from CRAN in early 2016: use 'RNetCDF' or 'ncdf4' instead.
The original description follows: it refers to 'netCDF' version 3 files.
This package provides a high-level R interface to
Unidata's 'netCDF' data files, which are portable across
platforms and include metadata information in addition to the
data sets. Using this package 'netCDF' files can be opened and
data sets read in easily. It is also easy to create new 'netCDF'
dimensions, variables, and files, or manipulate existing 'netCDF'
files. This interface provides considerably more functionality
than the old 'netCDF' package for R, and is not compatible with
the old 'netCDF' package for R. Release 1.2 (2005-01-24) adds
better support for character variables, and miscellaneous bug
fixes. Release 1.3 (2005-03-27) is for miscellaneous bug
fixes, and improves the documentation. Release 1.4
(2005-06-27) improves the efficiency, and adds small bug fixes.
Release 1.5 (2006-02-27) adds support for byte variables, plus
small bug fixes. Release 1.6 (2006-06-19) adds various bug
fixes, plus support for making dimensions WITHOUT dimvars
(coordinate variables), although I think this is a bad idea in
general. ALSO, the default behavior for 'put.var.ncdf()' with
unlimited variables and NO specified start and count parameters
has changed! Before, the default was to append to the end of
the existing variable. Now, the default is to assume a start
of 1 along each dimension, and a count of the current length of
each dimension. This really can be ambiguous when using an
unlimited dimension. I always specify both start and count when
writing to a variable with an unlimited dimension, and suggest
you do as well. I may require this in a future release, as it
seems to cause people problems.
Author: David Pierce <dpierce@ucsd.edu>
Maintainer: Brian Ripley <ripley@stats.ox.ac.uk>
Diff between ncdf versions 1.6.8 dated 2014-08-25 and 1.6.9 dated 2015-11-29
DESCRIPTION | 27 +++++++++++++++------------ MD5 | 6 +++--- NAMESPACE | 2 ++ R/ncdf.R | 7 ++++++- 4 files changed, 26 insertions(+), 16 deletions(-)
Title: Efficient and Accurate P-Value Computation for Position Weight
Matrices
Description: In putative Transcription Factor Binding Sites (TFBSs)
identification from sequence/alignments,
we are interested in the significance of certain match score.
TFMPvalue provides the accurate calculation of P-value with
score threshold for Position Weight Matrices,
or the score with given P-value.
This package is an interface to code originally made available by
Helene Touzet and Jean-Stephane Varre, 2007,
Algorithms Mol Biol:2, 15.
Author: Ge Tan <ge.tan09@imperial.ac.uk>
Maintainer: Ge Tan <ge.tan09@imperial.ac.uk>
Diff between TFMPvalue versions 0.0.5 dated 2014-05-10 and 0.0.6 dated 2015-11-29
TFMPvalue-0.0.5/TFMPvalue/inst/unitTests |only TFMPvalue-0.0.5/TFMPvalue/tests/runTests.R |only TFMPvalue-0.0.6/TFMPvalue/DESCRIPTION | 26 +++++++++++++------ TFMPvalue-0.0.6/TFMPvalue/MD5 | 14 +++++----- TFMPvalue-0.0.6/TFMPvalue/inst/TFMPvalueBuild |only TFMPvalue-0.0.6/TFMPvalue/man/TFMPvalue-lazyScore.Rd | 6 ++-- TFMPvalue-0.0.6/TFMPvalue/man/TFMPvalue-package.Rd | 8 ++++- TFMPvalue-0.0.6/TFMPvalue/tests/testthat |only 8 files changed, 35 insertions(+), 19 deletions(-)
Title: R Commander Plug-in for the EZR (Easy R) Package
Description: EZR (Easy R) adds a variety of statistical functions, including survival analyses, ROC analyses, metaanalyses, sample size calculation, and so on, to the R commander. EZR enables point-and-click easy access to statistical functions, especially for medical statistics. EZR is platform-independent and runs on Windows, Mac OS X, and UNIX. Its complete manual is available only in Japanese (Chugai Igakusha, ISBN: 978-4-498-10901-8 or Nankodo, ISBN: 978-4-524-26158-1), but an report that introduced the investigation of EZR was published in Bone Marrow Transplantation (Nature Publishing Group) as an Open article. This report can be used as a simple manual. It can be freely downloaded from the journal website as shown below.
Author: Yoshinobu Kanda
Maintainer: Yoshinobu Kanda <ycanda-tky@umin.ac.jp>
Diff between RcmdrPlugin.EZR versions 1.30 dated 2015-08-26 and 1.31 dated 2015-11-29
DESCRIPTION | 11 MD5 | 22 - NEWS | 6 R/EZR.R | 376 ++++++++++++++++++++++++++-- inst/CHANGES | 6 inst/doc/EZR.htm | 8 inst/doc/EZR.pdf |binary inst/etc/menus.txt | 3 inst/po/ja/LC_MESSAGES/R-RcmdrPlugin.EZR.mo |binary man/EZR.Rd | 10 man/EZR.dialogs.Rd | 3 po/R-RcmdrPlugin.EZR.po | 28 +- 12 files changed, 430 insertions(+), 43 deletions(-)
More information about RcmdrPlugin.EZR at CRAN
Permanent link
Title: Analyses of Phylogenetics and Evolution
Description: Functions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, ancestral character analyses, analyses of diversification and macroevolution, computing distances from allelic and nucleotide data, reading and writing nucleotide sequences as well as importing from BioConductor, and several tools such as Mantel's test, generalized skyline plots, graphical exploration of phylogenetic data (alex, trex, kronoviz), estimation of absolute evolutionary rates and clock-like trees using mean path lengths and penalized likelihood. Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and several methods handling incomplete distance matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some functions call external applications (PhyML, Clustal, T-Coffee, Muscle) whose results are returned into R.
Author: Emmanuel Paradis [aut, cre, cph],
Simon Blomberg [aut, cph],
Ben Bolker [aut, cph],
Julien Claude [aut, cph],
Hoa Sien Cuong [aut, cph],
Richard Desper [aut, cph],
Gilles Didier [aut, cph],
Benoit Durand [aut, cph],
Julien Dutheil [aut, cph],
Olivier Gascuel [aut, cph],
Christoph Heibl [aut, cph],
Anthony Ives [aut, cph],
Daniel Lawson [aut, cph],
Vincent Lefort [aut, cph],
Pierre Legendre [aut, cph],
Jim Lemon [aut, cph],
Rosemary McCloskey [aut, cph],
Johan Nylander [aut, cph],
Rainer Opgen-Rhein [aut, cph],
Andrei-Alin Popescu [aut, cph],
Manuela Royer-Carenzi [aut, cph],
Klaus Schliep [aut, cph],
Korbinian Strimmer [aut, cph],
Damien de Vienne [aut, cph]
Maintainer: Emmanuel Paradis <Emmanuel.Paradis@ird.fr>
Diff between ape versions 3.3 dated 2015-05-29 and 3.4 dated 2015-11-29
DESCRIPTION | 11 - MD5 | 81 ++++++------ NAMESPACE | 23 ++- R/CDF.birth.death.R | 11 - R/DNA.R | 34 +++++ R/as.phylo.R | 33 ++--- R/balance.R | 6 R/checkValidPhylo.R |only R/clustal.R | 33 ++++- R/collapse.singles.R | 101 +++++++++------ R/drop.tip.R | 11 - R/ladderize.R | 5 R/makeLabel.R | 44 ++++++ R/nodelabels.R | 28 ++-- R/parafit.R | 1 R/phydataplot.R | 89 +++++++++++-- R/plot.phylo.R | 106 +++++++++------- R/reorder.phylo.R | 8 - R/root.R | 287 ++++++++++++++++----------------------------- R/rtt.R | 78 ++++++------ build/vignette.rds |binary data/hivtree.newick.rda |binary data/landplants.newick.rda |binary data/opsin.newick.rda |binary inst/doc/MoranI.pdf |binary man/DNAbin2indel.Rd |only man/LTT.Rd | 3 man/alex.Rd | 2 man/alview.Rd |only man/ape-internal.Rd | 1 man/as.phylo.Rd | 10 - man/checkValidPhylo.Rd |only man/clustal.Rd | 20 ++- man/collapse.singles.Rd | 36 ++++- man/image.DNAbin.Rd | 2 man/label2table.Rd |only man/makeLabel.Rd | 2 man/makeNodeLabel.Rd | 2 man/mixedFontLabel.Rd | 2 man/phydataplot.Rd | 70 ++++++++++ man/plot.phylo.Rd | 11 + man/rlineage.Rd | 1 src/ape.c | 6 src/dist_dna.c | 145 ++++++++++++++-------- 44 files changed, 802 insertions(+), 501 deletions(-)
Title: Maximum Likelihood Estimation for Generalized Linear Mixed
Models
Description: Maximum likelihood estimation for generalized linear mixed models via Monte Carlo EM.
Author: Felipe Acosta Archila
Maintainer: Felipe Acosta Archila <acosta@umn.edu>
Diff between mcemGLM versions 1.0 dated 2015-08-14 and 1.1 dated 2015-11-29
DESCRIPTION | 8 MD5 | 97 ++++-- NAMESPACE | 5 R/RcppExports.R | 64 ++++ R/anova.mcemGLMM.R | 40 +- R/coef.mcemGLMM.R |only R/covMat.mcemGLMM.R |only R/mcemGLMM.R | 33 +- R/mcemGLMMext.R | 20 - R/mcemMLEGamma_n.R |only R/mcemMLEGamma_t_fixed_df.R |only R/mcemMLENegBinom_n.R | 58 ++-- R/mcemMLENegBinom_t_fixed_df.R | 58 ++-- R/mcemMLEPoisson_n.R | 58 ++-- R/mcemMLEPoisson_t_fixed_df.R | 58 ++-- R/mcemMLE_n.R | 56 ++- R/mcemMLE_t_fixed_df.R | 58 ++-- R/predict.mcemGLMM.R | 102 +++++-- R/ranef.mcemGLMM.R |only R/residuals.mcemGLMM.R | 15 - R/summary.mcemGLMM.R | 16 - R/toMaxDiagGamma_n.R |only R/toMaxDiagGamma_t.R |only build/vignette.rds |binary data/epilepsy.rdata |only data/salamander.rdata |only inst/doc/mcemGLM-vignette.R | 218 +++------------ inst/doc/mcemGLM-vignette.Rnw | 505 +++++++++++++++++------------------ inst/doc/mcemGLM-vignette.pdf |binary man/anova.mcemGLMM.Rd | 11 man/coef.mcemGLMM.Rd |only man/covMat.mcemGLMM.Rd |only man/epilepsy.Rd |only man/mcemGLMM.Rd | 31 +- man/mcemGLMMext.Rd | 6 man/predict.mcemGLMM.Rd | 3 man/ranef.mcemGLMM.Rd |only man/salamander.Rd |only man/summary.mcemGLMM.Rd | 6 src/MCMCloglikelihoodGamma_n.cpp |only src/MCMCloglikelihoodGamma_t.cpp |only src/RcppExports.cpp | 320 ++++++++++++++++++++++ src/iMatrixDiagGamma_n.cpp |only src/iMatrixDiagGamma_t.cpp |only src/loglikelihoodGammaGradient_n.cpp |only src/loglikelihoodGammaGradient_t.cpp |only src/loglikelihoodGammaHessian_n.cpp |only src/loglikelihoodGammaHessian_t.cpp |only src/loglikelihoodGamma_n.cpp |only src/loglikelihoodGamma_t.cpp |only src/margloglikelihoodLogit_n.cpp |only src/margloglikelihoodLogit_t.cpp |only src/mcemGLM.h | 65 ++++ src/qFunctionDiagGamma_n.cpp |only src/qFunctionDiagGamma_t.cpp |only src/uSampler.cpp | 5 src/uSamplerGamma_n.cpp |only src/uSamplerGamma_t.cpp |only src/uSamplerNegBinom_n.cpp | 5 src/uSamplerNegBinom_t.cpp | 5 src/uSamplerPoisson_n.cpp | 5 src/uSamplerPoisson_t.cpp | 5 src/uSampler_n.cpp | 5 vignettes/mcemGLM-vignette.Rnw | 505 +++++++++++++++++------------------ vignettes/references.bib |only 65 files changed, 1497 insertions(+), 949 deletions(-)
Title: Classical Jacobi Eigensolution Algorithm
Description: Implements the classical Jacobi (1846) algorithm for the
eigenvalues and eigenvectors of a real symmetric matrix, both in
pure R and in C++ using Rcpp. Mainly as a programming example
for teaching purposes.
Author: Bill Venables
Maintainer: Bill Venables <Bill.Venables@gmail.com>
Diff between JacobiEigen versions 0.1 dated 2015-08-09 and 0.2-1 dated 2015-11-29
JacobiEigen-0.1/JacobiEigen/man/JacobiCpp.Rd |only JacobiEigen-0.1/JacobiEigen/vignettes/JacobiEigen.html |only JacobiEigen-0.2-1/JacobiEigen/DESCRIPTION | 16 +-- JacobiEigen-0.2-1/JacobiEigen/MD5 | 26 ++--- JacobiEigen-0.2-1/JacobiEigen/NAMESPACE | 4 JacobiEigen-0.2-1/JacobiEigen/R/JacobiR.R | 49 ++++++++- JacobiEigen-0.2-1/JacobiEigen/R/RcppExports.R | 19 --- JacobiEigen-0.2-1/JacobiEigen/build/vignette.rds |binary JacobiEigen-0.2-1/JacobiEigen/inst/doc/JacobiEigen.R | 26 +++-- JacobiEigen-0.2-1/JacobiEigen/inst/doc/JacobiEigen.Rmd | 80 ++++++++++------ JacobiEigen-0.2-1/JacobiEigen/inst/doc/JacobiEigen.pdf |binary JacobiEigen-0.2-1/JacobiEigen/man/Jacobi.Rd |only JacobiEigen-0.2-1/JacobiEigen/man/JacobiR.Rd | 17 ++- JacobiEigen-0.2-1/JacobiEigen/src/JacobiCpp.cpp | 33 ------ JacobiEigen-0.2-1/JacobiEigen/vignettes/JacobiEigen.Rmd | 80 ++++++++++------ JacobiEigen-0.2-1/JacobiEigen/vignettes/header.tex |only 16 files changed, 202 insertions(+), 148 deletions(-)
Title: Visualizes Random Forests with Feature Contributions
Description: Enables users to form appropriate visualizations of high dimensional mapping curvatures of random forests.
Author: Soeren Havelund Welling
Maintainer: Soeren Havelund Welling <SOWE@DTU.DK>
Diff between forestFloor versions 1.8.8 dated 2015-11-02 and 1.8.9 dated 2015-11-29
forestFloor-1.8.8/forestFloor/man/ggPlotForestFloor.Rd |only forestFloor-1.8.8/forestFloor/man/ggplotGrob.Rd |only forestFloor-1.8.8/forestFloor/tests/ggplotUsage.R |only forestFloor-1.8.9/forestFloor/DESCRIPTION | 11 - forestFloor-1.8.9/forestFloor/MD5 | 31 +-- forestFloor-1.8.9/forestFloor/NAMESPACE | 26 +- forestFloor-1.8.9/forestFloor/R/fcol.R | 17 + forestFloor-1.8.9/forestFloor/R/forestFloor_randomForest_multiClass.R | 3 forestFloor-1.8.9/forestFloor/R/forestFloor_randomForest_regression.R | 3 forestFloor-1.8.9/forestFloor/R/forestFloor_source.R | 11 - forestFloor-1.8.9/forestFloor/R/ggPlotForestFloor.R | 98 +++++----- forestFloor-1.8.9/forestFloor/R/plot.forestFloor_regression.R | 4 forestFloor-1.8.9/forestFloor/R/show3d.R | 51 ++++- forestFloor-1.8.9/forestFloor/man/fcol.Rd | 8 forestFloor-1.8.9/forestFloor/man/forestFloor.Rd | 10 - forestFloor-1.8.9/forestFloor/man/show3d.Rd | 4 forestFloor-1.8.9/forestFloor/src/testcpp_rec6.cpp | 8 forestFloor-1.8.9/forestFloor/tests/testMultiClass.cpp.R | 1 18 files changed, 173 insertions(+), 113 deletions(-)