Title: Everyone's Statistical Software
Description: A framework that brings together an abundance of common
statistical models found across packages into a unified interface, and
provides a common architecture for estimation and interpretation, as well
as bridging functions to absorb increasingly more models into the
collective library. Zelig allows each individual package, for each
statistical model, to be accessed by a common uniformly structured call and
set of arguments. Moreover, Zelig automates all the surrounding building
blocks of a statistical workflow --procedures and algorithms that may be
essential to one user's application but which the original package
developer did not use in their own research and might not themselves
support. These include bootstrapping, jackknifing, and reweighting of data.
In particular, Zelig automatically generates predicted and simulated
quantities of interest (such as relative risk ratios, average treatment
effects, first differences and predicted and expected values) to interpret
and visualize complex models.
Author: Christine Choirat, James Honaker, Kosuke Imai, Gary King, Olivia Lau
Maintainer: James Honaker <zelig-zee@iq.harvard.edu>
Diff between Zelig versions 5.0-8 dated 2015-11-18 and 5.0-9 dated 2015-12-01
DESCRIPTION | 8 - MD5 | 8 - R/model-zelig.R | 37 +++++++- R/plots.R | 237 ++++++++++++++++++++++++++++++++++++++++++++++++++------ R/utils.R | 17 ++-- 5 files changed, 261 insertions(+), 46 deletions(-)
Title: Somoclu
Description: Somoclu is a massively parallel implementation of self-organizing maps. It exploits multicore CPUs and it can be accelerated by CUDA. The topology of the map can be planar or toroid and the grid of neurons can be rectangular or hexagonal .
Author: Peter Wittek [aut], Shichao Gao [cre]
Maintainer: Shichao Gao <xgdgsc@gmail.com>
Diff between Rsomoclu versions 1.5 dated 2015-10-01 and 1.5.0.1 dated 2015-12-01
DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- R/Rsomoclu.R | 10 +++++----- data/rgbs.txt.gz |binary man/Rsomoclu.train.Rd | 12 +++++++----- src/Makefile.in | 20 +++++++++++++------- src/Rsomoclu.cpp | 42 +++++++++++++++--------------------------- src/denseCpuKernels.cpp | 4 ++-- src/denseGpuKernels.cu | 28 +++++++++++++--------------- src/mapDistanceFunctions.cpp | 19 ++++++++++--------- src/somoclu.h | 21 ++++++++++++--------- src/sparseCpuKernels.cpp | 4 ++-- src/training.cpp | 40 ++++++++++++++++++++++++++++++---------- tests/R_interface_test.R | 6 ++++-- 14 files changed, 130 insertions(+), 110 deletions(-)
Title: Simplify Parameters
Description: An interface to simplify organizing parameters used in a package,
using external configuration files. This attempts to provide a cleaner
alternative to options().
Author: Sahil Seth [aut, cre],
Yihui Xie [ctb] (kable from knitr R/table.R)
Maintainer: Sahil Seth <me@sahilseth.com>
Diff between params versions 0.3.0 dated 2015-09-22 and 0.4 dated 2015-12-01
params-0.3.0/params/man/write_sheet.Rd |only params-0.4/params/DESCRIPTION | 20 +++---- params-0.4/params/MD5 | 35 +++++++----- params-0.4/params/NAMESPACE | 3 - params-0.4/params/NEWS.md | 5 + params-0.4/params/R/check_args.R |only params-0.4/params/R/conf.R | 4 - params-0.4/params/R/kable.R | 47 +++------------- params-0.4/params/R/pkg-opts.R | 4 - params-0.4/params/R/read-sheet.R | 92 ++++++++++++++++++++++++++------- params-0.4/params/R/write-sheet.R | 32 +++++++++-- params-0.4/params/README.md | 4 + params-0.4/params/inst/conf/build.R |only params-0.4/params/inst/extdata |only params-0.4/params/man/check_args.Rd |only params-0.4/params/man/kable.Rd | 52 +----------------- params-0.4/params/man/opts.Rd | 5 - params-0.4/params/man/params.Rd | 15 ++--- params-0.4/params/man/parse_opts.Rd | 2 params-0.4/params/man/read_sheet.Rd | 66 ++++++++++++++++++++--- 20 files changed, 224 insertions(+), 162 deletions(-)
Title: Analyze Paleontological Time-Series
Description: Facilitates analysis of paleontological sequences of trait values from an evolving lineage. Functions are provided to fit, using maximum likelihood, evolutionary models including unbiased random walks, directional evolution, stasis, Ornstein-Uhlenbeck, punctuated change, and evolutionary models in which traits track some measured covariate.
Author: Gene Hunt
Maintainer: Gene Hunt <hunte@si.edu>
Diff between paleoTS versions 0.4-4 dated 2012-06-12 and 0.5-1 dated 2015-12-01
paleoTS-0.4-4/paleoTS/R/IC.R |only paleoTS-0.4-4/paleoTS/R/LRI.R |only paleoTS-0.4-4/paleoTS/R/akaike.wts.R |only paleoTS-0.4-4/paleoTS/R/as.paleoTS.R |only paleoTS-0.4-4/paleoTS/R/as.paleoTSfit.R |only paleoTS-0.4-4/paleoTS/R/cat.paleoTS.R |only paleoTS-0.4-4/paleoTS/R/compareModels.R |only paleoTS-0.4-4/paleoTS/R/fit.sgs.R |only paleoTS-0.4-4/paleoTS/R/fit3models.R |only paleoTS-0.4-4/paleoTS/R/fitGpunc.R |only paleoTS-0.4-4/paleoTS/R/ln.paleoTS.R |only paleoTS-0.4-4/paleoTS/R/logL.GRW.R |only paleoTS-0.4-4/paleoTS/R/logL.Mult.R |only paleoTS-0.4-4/paleoTS/R/logL.Mult.covTrack.R |only paleoTS-0.4-4/paleoTS/R/logL.SameMs.R |only paleoTS-0.4-4/paleoTS/R/logL.SameVs.R |only paleoTS-0.4-4/paleoTS/R/logL.Stasis.R |only paleoTS-0.4-4/paleoTS/R/logL.URW.R |only paleoTS-0.4-4/paleoTS/R/logL.covTrack.R |only paleoTS-0.4-4/paleoTS/R/logL.joint.GRW.R |only paleoTS-0.4-4/paleoTS/R/logL.joint.OU.R |only paleoTS-0.4-4/paleoTS/R/logL.joint.Stasis.R |only paleoTS-0.4-4/paleoTS/R/logL.joint.URW.R |only paleoTS-0.4-4/paleoTS/R/logL.joint.punc.R |only paleoTS-0.4-4/paleoTS/R/logL.joint.punc.omega.R |only paleoTS-0.4-4/paleoTS/R/logL.punc.R |only paleoTS-0.4-4/paleoTS/R/logL.punc.omega.R |only paleoTS-0.4-4/paleoTS/R/logL.sgs.R |only paleoTS-0.4-4/paleoTS/R/logL.sgs.omega.R |only paleoTS-0.4-4/paleoTS/R/lynchD.R |only paleoTS-0.4-4/paleoTS/R/mle.GRW.R |only paleoTS-0.4-4/paleoTS/R/mle.Stasis.R |only paleoTS-0.4-4/paleoTS/R/mle.URW.R |only paleoTS-0.4-4/paleoTS/R/modelCurves.R |only paleoTS-0.4-4/paleoTS/R/opt.GRW.R |only paleoTS-0.4-4/paleoTS/R/opt.GRW.shift.R |only paleoTS-0.4-4/paleoTS/R/opt.RW.Mult.R |only paleoTS-0.4-4/paleoTS/R/opt.RW.SameMs.R |only paleoTS-0.4-4/paleoTS/R/opt.RW.SameVs.R |only paleoTS-0.4-4/paleoTS/R/opt.Stasis.R |only paleoTS-0.4-4/paleoTS/R/opt.URW.R |only paleoTS-0.4-4/paleoTS/R/opt.covTrack.Mult.R |only paleoTS-0.4-4/paleoTS/R/opt.covTrack.R |only paleoTS-0.4-4/paleoTS/R/opt.joint.GRW.R |only paleoTS-0.4-4/paleoTS/R/opt.joint.OU.R |only paleoTS-0.4-4/paleoTS/R/opt.joint.Stasis.R |only paleoTS-0.4-4/paleoTS/R/opt.joint.URW.R |only paleoTS-0.4-4/paleoTS/R/opt.joint.punc.R |only paleoTS-0.4-4/paleoTS/R/opt.punc.R |only paleoTS-0.4-4/paleoTS/R/opt.sgs.R |only paleoTS-0.4-4/paleoTS/R/ou.M.R |only paleoTS-0.4-4/paleoTS/R/ou.V.R |only paleoTS-0.4-4/paleoTS/R/plot.paleoTS.R |only paleoTS-0.4-4/paleoTS/R/pool.var.R |only paleoTS-0.4-4/paleoTS/R/read.paleoTS.R |only paleoTS-0.4-4/paleoTS/R/shift2gg.R |only paleoTS-0.4-4/paleoTS/R/shifts.R |only paleoTS-0.4-4/paleoTS/R/sim.GRW.R |only paleoTS-0.4-4/paleoTS/R/sim.GRW.shift.R |only paleoTS-0.4-4/paleoTS/R/sim.OU.R |only paleoTS-0.4-4/paleoTS/R/sim.Stasis.R |only paleoTS-0.4-4/paleoTS/R/sim.covTrack.R |only paleoTS-0.4-4/paleoTS/R/sim.punc.R |only paleoTS-0.4-4/paleoTS/R/sim.sgs.R |only paleoTS-0.4-4/paleoTS/R/split4punc.R |only paleoTS-0.4-4/paleoTS/R/std.paleoTS.R |only paleoTS-0.4-4/paleoTS/R/sub.paleoTS.R |only paleoTS-0.4-4/paleoTS/R/test.var.het.R |only paleoTS-0.4-4/paleoTS/man/opt.RW.Mult.Rd |only paleoTS-0.4-4/paleoTS/man/paleoTS-internal.Rd |only paleoTS-0.5-1/paleoTS/DESCRIPTION | 20 +-- paleoTS-0.5-1/paleoTS/MD5 | 128 ++++++------------------ paleoTS-0.5-1/paleoTS/NAMESPACE | 18 +-- paleoTS-0.5-1/paleoTS/R/paleoTS_0.5-1.R |only paleoTS-0.5-1/paleoTS/data/dorsal.spines.rda |binary paleoTS-0.5-1/paleoTS/man/ESD.Rd |only paleoTS-0.5-1/paleoTS/man/IC.Rd | 2 paleoTS-0.5-1/paleoTS/man/LRI.Rd | 5 paleoTS-0.5-1/paleoTS/man/as.paleoTS.Rd | 10 + paleoTS-0.5-1/paleoTS/man/bootSimpleComplex.Rd |only paleoTS-0.5-1/paleoTS/man/cat.paleoTS.Rd | 5 paleoTS-0.5-1/paleoTS/man/compareModels.Rd | 4 paleoTS-0.5-1/paleoTS/man/fit.sgs.Rd | 11 +- paleoTS-0.5-1/paleoTS/man/fit3models.Rd | 16 ++- paleoTS-0.5-1/paleoTS/man/fitGpunc.Rd | 39 +++---- paleoTS-0.5-1/paleoTS/man/fitModeShift.Rd |only paleoTS-0.5-1/paleoTS/man/fitMult.Rd |only paleoTS-0.5-1/paleoTS/man/fitSimple.Rd |only paleoTS-0.5-1/paleoTS/man/logL.GRW.Rd | 7 + paleoTS-0.5-1/paleoTS/man/logL.joint.GRW.Rd | 17 ++- paleoTS-0.5-1/paleoTS/man/lynchD.Rd | 8 - paleoTS-0.5-1/paleoTS/man/modelCurves.Rd | 2 paleoTS-0.5-1/paleoTS/man/opt.GRW.Rd | 14 +- paleoTS-0.5-1/paleoTS/man/opt.GRW.shift.Rd | 12 +- paleoTS-0.5-1/paleoTS/man/opt.covTrack.Rd | 26 +++- paleoTS-0.5-1/paleoTS/man/opt.joint.GRW.Rd | 16 +-- paleoTS-0.5-1/paleoTS/man/paleoTS-package.Rd | 5 paleoTS-0.5-1/paleoTS/man/plot.paleoTS.Rd | 9 - paleoTS-0.5-1/paleoTS/man/sim.OU.Rd | 7 - paleoTS-0.5-1/paleoTS/man/sim.covTrack.Rd | 3 paleoTS-0.5-1/paleoTS/man/sim.punc.Rd | 9 + paleoTS-0.5-1/paleoTS/man/sub.paleoTS.Rd | 2 paleoTS-0.5-1/paleoTS/man/test.var.het.Rd | 13 +- 103 files changed, 197 insertions(+), 211 deletions(-)
Title: Multivariate Survival Trees
Description: Constructs trees for multivariate survival data using marginal and frailty models.
Author: Xiaogang Su [aut],
Peter Calhoun [aut, cre],
Juanjuan Fan [aut]
Maintainer: Peter Calhoun <calhoun.peter@gmail.com>
Diff between MST versions 1.1 dated 2015-08-08 and 1.2 dated 2015-12-01
MST-1.1/MST/R/MST-internal.R |only MST-1.2/MST/DESCRIPTION | 18 +++-- MST-1.2/MST/MD5 | 52 ++++++++-------- MST-1.2/MST/NAMESPACE | 1 MST-1.2/MST/R/MST.R | 104 ++++++++++---------------------- MST-1.2/MST/R/MST.plot.R | 8 -- MST-1.2/MST/R/MST.plot.latex.R | 3 MST-1.2/MST/R/bootstrap.grow.prune.R | 47 +++++--------- MST-1.2/MST/R/bootstrap.size.R | 24 +++---- MST-1.2/MST/R/grow.MST.R | 45 +++---------- MST-1.2/MST/R/is.odd.R | 2 MST-1.2/MST/R/obtain.btree.R | 3 MST-1.2/MST/R/ordinalizeFunc.R | 10 --- MST-1.2/MST/R/partition.MST.R | 43 ++++--------- MST-1.2/MST/R/power.set.R | 2 MST-1.2/MST/R/prune.size.testsample.R | 7 -- MST-1.2/MST/R/rmultime.R | 26 ++------ MST-1.2/MST/R/send.down.R | 49 +++++++-------- MST-1.2/MST/R/sortTree.R | 8 +- MST-1.2/MST/R/splitting.stat.MST2.R | 6 - MST-1.2/MST/man/MST-package.Rd | 5 - MST-1.2/MST/man/MST.Rd | 38 +++++------ MST-1.2/MST/man/MST.plot.Rd | 17 ++--- MST-1.2/MST/man/MST.plot.latex.Rd | 17 ++--- MST-1.2/MST/man/bootstrap.grow.prune.Rd | 15 ++-- MST-1.2/MST/man/grow.MST.Rd | 14 ++-- MST-1.2/MST/man/rmultime.Rd | 24 +++---- MST-1.2/MST/man/send.down.Rd |only 28 files changed, 245 insertions(+), 343 deletions(-)
Title: Simple Utility Providing Terminal Access to all R Functions
Description: A small utility which wraps Rscript and provides access to all R
functions from the shell.
Author: Sahil Seth [aut, cre]
Maintainer: Sahil Seth <me@sahilseth.com>
Diff between funr versions 0.1.1 dated 2015-09-23 and 0.2.0 dated 2015-12-01
DESCRIPTION | 12 ++++-- LICENSE |only MD5 | 25 +++++++++----- NAMESPACE | 3 + R/parse_params.R | 44 ++++++++++++++++--------- R/render.R | 4 +- R/sys_script.R |only README.md | 85 +++++++++++++++++++++++++++++++++++++++++-------- inst/scripts/README.md |only inst/scripts/devtools |only inst/scripts/funr | 2 - inst/scripts/lit |only inst/testfun.csv |only man/funr.Rd | 3 + man/render_funr.Rd | 2 - man/setup.Rd | 2 - man/sys.script.Rd |only 17 files changed, 133 insertions(+), 49 deletions(-)
Title: Feature Extraction for Discretely-Sampled Functional Data
Description: Discretely-sampled function is first smoothed. Features
of the smoothed function are then extracted. Some of the key
features include mean value, first and second derivatives,
critical points (i.e. local maxima and minima), curvature of
cunction at critical points, wiggliness of the function, noise
in data, and outliers in data.
Author: Ravi Varadhan, Johns Hopkins University, and MKG Subramaniam,
AT&T Reserach Labs.
Maintainer: Ravi Varadhan <rvaradhan@jhmi.edu>
Diff between features versions 2011.8-2 dated 2011-08-17 and 2015.12-1 dated 2015-12-01
DESCRIPTION | 9 +++++---- MD5 | 10 +++++----- NAMESPACE | 3 +++ NEWS | 6 ++++++ R/features.R | 14 +++++++------- demo/features.R | 1 + 6 files changed, 27 insertions(+), 16 deletions(-)
Title: Tools for Cycling Data Analysis
Description: A suite of functions for analysing cycling data.
Author: Jordan Mackie [aut, cre]
Maintainer: Jordan Mackie <jmackie@protonmail.com>
Diff between cycleRtools versions 1.0.3 dated 2015-10-15 and 1.0.4 dated 2015-12-01
cycleRtools-1.0.3/cycleRtools/R/format_tcx2.R |only cycleRtools-1.0.3/cycleRtools/R/read_pwx2.R |only cycleRtools-1.0.3/cycleRtools/R/read_tcx2.R |only cycleRtools-1.0.4/cycleRtools/DESCRIPTION | 11 cycleRtools-1.0.4/cycleRtools/MD5 | 120 +++++----- cycleRtools-1.0.4/cycleRtools/NAMESPACE | 7 cycleRtools-1.0.4/cycleRtools/NEWS | 14 + cycleRtools-1.0.4/cycleRtools/R/GC.R |only cycleRtools-1.0.4/cycleRtools/R/Ptmodels_S3.R | 12 - cycleRtools-1.0.4/cycleRtools/R/RcppExports.R | 23 -- cycleRtools-1.0.4/cycleRtools/R/Wbal.R | 9 cycleRtools-1.0.4/cycleRtools/R/convert_time.R | 16 + cycleRtools-1.0.4/cycleRtools/R/data_doc.R | 7 cycleRtools-1.0.4/cycleRtools/R/format_GC.R |only cycleRtools-1.0.4/cycleRtools/R/format_fit.R | 5 cycleRtools-1.0.4/cycleRtools/R/format_pwx.R | 3 cycleRtools-1.0.4/cycleRtools/R/format_srm.R | 3 cycleRtools-1.0.4/cycleRtools/R/format_tcx.R | 5 cycleRtools-1.0.4/cycleRtools/R/misc.R | 32 +- cycleRtools-1.0.4/cycleRtools/R/mmv.R | 22 - cycleRtools-1.0.4/cycleRtools/R/read.R | 21 - cycleRtools-1.0.4/cycleRtools/R/read_pwx.R | 65 ++--- cycleRtools-1.0.4/cycleRtools/R/read_tcx.R | 125 +++++------ cycleRtools-1.0.4/cycleRtools/R/ride_time.R | 1 cycleRtools-1.0.4/cycleRtools/data/cycling_data.rda |binary cycleRtools-1.0.4/cycleRtools/inst/doc/cycling_analysis.R | 17 - cycleRtools-1.0.4/cycleRtools/inst/doc/cycling_analysis.Rmd | 18 - cycleRtools-1.0.4/cycleRtools/inst/doc/cycling_analysis.html | 24 -- cycleRtools-1.0.4/cycleRtools/man/CP_model_inv.Rd | 2 cycleRtools-1.0.4/cycleRtools/man/GC.Rd |only cycleRtools-1.0.4/cycleRtools/man/LT.Rd | 3 cycleRtools-1.0.4/cycleRtools/man/NP.Rd | 3 cycleRtools-1.0.4/cycleRtools/man/Pt_model.Rd | 4 cycleRtools-1.0.4/cycleRtools/man/Pt_prof.Rd | 7 cycleRtools-1.0.4/cycleRtools/man/TSS.Rd | 2 cycleRtools-1.0.4/cycleRtools/man/Wbal.Rd | 14 + cycleRtools-1.0.4/cycleRtools/man/Wbal_plots.Rd | 3 cycleRtools-1.0.4/cycleRtools/man/convert_time.Rd | 4 cycleRtools-1.0.4/cycleRtools/man/cycling_data.Rd | 4 cycleRtools-1.0.4/cycleRtools/man/diff_section.Rd | 7 cycleRtools-1.0.4/cycleRtools/man/download_elev_data.Rd | 6 cycleRtools-1.0.4/cycleRtools/man/elevation_correct.Rd | 5 cycleRtools-1.0.4/cycleRtools/man/interval_data.Rd | 2 cycleRtools-1.0.4/cycleRtools/man/interval_detect.Rd | 5 cycleRtools-1.0.4/cycleRtools/man/mmv.Rd | 9 cycleRtools-1.0.4/cycleRtools/man/mmv2.Rd | 17 - cycleRtools-1.0.4/cycleRtools/man/predict.Ptmodels.Rd | 2 cycleRtools-1.0.4/cycleRtools/man/pwr_TRIMP.Rd | 2 cycleRtools-1.0.4/cycleRtools/man/read.Rd | 46 +--- cycleRtools-1.0.4/cycleRtools/man/reset.Rd | 3 cycleRtools-1.0.4/cycleRtools/man/ride_time.Rd | 5 cycleRtools-1.0.4/cycleRtools/man/rollmean_smth.Rd | 4 cycleRtools-1.0.4/cycleRtools/man/smth_plot.Rd | 5 cycleRtools-1.0.4/cycleRtools/man/summary.cycleRdata.Rd | 3 cycleRtools-1.0.4/cycleRtools/man/uniform.Rd | 5 cycleRtools-1.0.4/cycleRtools/man/zdist_plot.Rd | 5 cycleRtools-1.0.4/cycleRtools/man/zone_index.Rd | 3 cycleRtools-1.0.4/cycleRtools/man/zone_time.Rd | 4 cycleRtools-1.0.4/cycleRtools/src/RcppExports.cpp | 24 +- cycleRtools-1.0.4/cycleRtools/src/Wbal_.cpp | 2 cycleRtools-1.0.4/cycleRtools/src/mmv2_.cpp | 23 -- cycleRtools-1.0.4/cycleRtools/src/rollmean_.cpp | 8 cycleRtools-1.0.4/cycleRtools/src/rollmean_ema_.cpp | 4 cycleRtools-1.0.4/cycleRtools/vignettes/cycling_analysis.Rmd | 18 - 64 files changed, 422 insertions(+), 401 deletions(-)
Title: A Google Analytics API Client
Description: Provides functions for accessing and retrieving data from the
Google Analytics APIs (https://developers.google.com/analytics/). Supports
OAuth 2.0 authorization. Package provides access to the Management, Core
Reporting, Multi-Channel Funnels Reporting, Real Time Reporting and
Metadata APIs. Access to all the Google Analytics accounts which the user
has access to. Auto-pagination to return more than 10,000 rows of the
results by combining multiple data requests. Also package provides
shiny app to explore the core reporting API dimensions and metrics.
Author: Artem Klevtsov [aut, cre],
Philipp Upravitelev [ctb],
Olga Shramko [ctb]
Maintainer: Artem Klevtsov <a.a.klevtsov@gmail.com>
Diff between RGA versions 0.3 dated 2015-10-22 and 0.3.1 dated 2015-12-01
RGA-0.3.1/RGA/DESCRIPTION | 15 +- RGA-0.3.1/RGA/MD5 | 136 +++++++++++------------ RGA-0.3.1/RGA/NAMESPACE | 4 RGA-0.3.1/RGA/R/accounts.R | 35 ----- RGA-0.3.1/RGA/R/auth.R | 39 ++++-- RGA-0.3.1/RGA/R/convert.R | 19 +-- RGA-0.3.1/RGA/R/custom-dims.R | 77 +------------ RGA-0.3.1/RGA/R/custom-mets.R | 83 +------------- RGA-0.3.1/RGA/R/custom-sources.R | 39 ------ RGA-0.3.1/RGA/R/date-ranges.R | 4 RGA-0.3.1/RGA/R/experiments.R | 105 +---------------- RGA-0.3.1/RGA/R/filters.R | 90 +-------------- RGA-0.3.1/RGA/R/firstdate.R | 10 - RGA-0.3.1/RGA/R/ga.R | 35 ++--- RGA-0.3.1/RGA/R/get-data.R | 60 +++++----- RGA-0.3.1/RGA/R/goals.R | 79 +------------ RGA-0.3.1/RGA/R/mcf.R | 21 --- RGA-0.3.1/RGA/R/metadata.R | 19 +-- RGA-0.3.1/RGA/R/mgmt.R | 34 ++--- RGA-0.3.1/RGA/R/profiles.R | 92 +-------------- RGA-0.3.1/RGA/R/query.R | 2 RGA-0.3.1/RGA/R/realtime.R | 14 +- RGA-0.3.1/RGA/R/report.R | 47 +++++-- RGA-0.3.1/RGA/R/request.R | 99 ++++++++-------- RGA-0.3.1/RGA/R/segments.R | 33 ----- RGA-0.3.1/RGA/R/unsampled.R | 88 +------------- RGA-0.3.1/RGA/R/uploads.R | 64 +--------- RGA-0.3.1/RGA/R/url.R | 2 RGA-0.3.1/RGA/R/utils.R | 54 ++++++--- RGA-0.3.1/RGA/R/webproperties.R | 84 +------------- RGA-0.3.1/RGA/R/zzz.R | 5 RGA-0.3.1/RGA/inst/NEWS.Rd | 18 +++ RGA-0.3.1/RGA/inst/doc/authorize.Rmd | 34 +---- RGA-0.3.1/RGA/inst/doc/authorize.html | 43 +------ RGA-0.3.1/RGA/man/RGA-package.Rd | 3 RGA-0.3.1/RGA/man/authorize.Rd | 31 +++-- RGA-0.3.1/RGA/man/firstdate.Rd | 16 +- RGA-0.3.1/RGA/man/ga.Rd | 2 RGA-0.3.1/RGA/man/get_custom_dimension.Rd | 51 +++----- RGA-0.3.1/RGA/man/get_custom_metric.Rd | 51 +++----- RGA-0.3.1/RGA/man/get_experiment.Rd | 109 ++++++++---------- RGA-0.3.1/RGA/man/get_filter.Rd | 77 +++++++------ RGA-0.3.1/RGA/man/get_ga.Rd | 31 ++--- RGA-0.3.1/RGA/man/get_goal.Rd | 70 +++++++---- RGA-0.3.1/RGA/man/get_mcf.Rd | 24 +--- RGA-0.3.1/RGA/man/get_profile.Rd | 61 ++++------ RGA-0.3.1/RGA/man/get_realtime.Rd | 19 +-- RGA-0.3.1/RGA/man/get_unsampled_report.Rd | 55 ++++----- RGA-0.3.1/RGA/man/get_upload.Rd | 51 ++++---- RGA-0.3.1/RGA/man/get_webproperty.Rd | 54 +++------ RGA-0.3.1/RGA/man/list_accounts.Rd | 48 +++----- RGA-0.3.1/RGA/man/list_custom_data_sources.Rd |only RGA-0.3.1/RGA/man/list_custom_dimensions.Rd | 48 +++----- RGA-0.3.1/RGA/man/list_custom_metrics.Rd | 48 +++----- RGA-0.3.1/RGA/man/list_dimsmets.Rd | 3 RGA-0.3.1/RGA/man/list_experiments.Rd | 88 ++++++++------ RGA-0.3.1/RGA/man/list_filters.Rd | 85 ++++++++++---- RGA-0.3.1/RGA/man/list_goals.Rd | 79 ++++++++----- RGA-0.3.1/RGA/man/list_profiles.Rd | 64 +++++----- RGA-0.3.1/RGA/man/list_segments.Rd | 53 ++++---- RGA-0.3.1/RGA/man/list_unsampled_reports.Rd | 57 +++++---- RGA-0.3.1/RGA/man/list_uploads.Rd | 51 ++++---- RGA-0.3.1/RGA/man/list_webproperties.Rd | 53 ++++---- RGA-0.3.1/RGA/man/shiny_dimsmets.Rd | 2 RGA-0.3.1/RGA/tests/testthat/test-auth.R | 7 - RGA-0.3.1/RGA/tests/testthat/test-convert-case.R |only RGA-0.3.1/RGA/tests/testthat/test-convert-mcf.R | 42 +++---- RGA-0.3.1/RGA/tests/testthat/test-query.R | 6 - RGA-0.3.1/RGA/vignettes/authorize.Rmd | 34 +---- RGA-0.3/RGA/R/env.R |only RGA-0.3/RGA/man/list_custom_sources.Rd |only 71 files changed, 1215 insertions(+), 1841 deletions(-)
Title: Import, Plot and Analyze Bathymetric and Topographic Data
Description: Import xyz data from the NOAA, GEBCO and other sources, plot xyz data to prepare publication-ready figures, analyze xyz data to extract transects, get depth / altitude based on geographical coordinates, or calculate z-constrained least-cost paths.
Author: Eric Pante, Benoit Simon-Bouhet, and Jean-Olivier Irisson
Maintainer: Eric Pante <pante.eric@gmail.com>
Diff between marmap versions 0.9.3 dated 2015-10-06 and 0.9.4 dated 2015-12-01
DESCRIPTION | 12 ++++++------ MD5 | 38 +++++++++++++++++++------------------- NAMESPACE | 3 ++- R/as.SpatialGridDataFrame.R | 3 --- R/as.bathy.R | 3 --- R/as.raster.R | 3 --- R/readGEBCO.bathy.R | 8 ++++---- build/vignette.rds |binary data/aleutians.rda |binary data/celt.rda |binary data/florida.rda |binary data/hawaii.rda |binary data/hawaii.sites.rda |binary data/irregular.rda |binary data/metallo.rda |binary data/nw.atlantic.coast.rda |binary data/nw.atlantic.rda |binary inst/doc/marmap-ImportExport.pdf |binary man/marmap.Rd | 4 ++-- man/readGEBCO.bathy.Rd | 4 ++-- 20 files changed, 35 insertions(+), 43 deletions(-)
Title: Atomic Force Microscope Image Analysis
Description: Provides Atomic Force Microscope images analysis such as Power
Spectrum Density, roughness against lengthscale, variogram and variance,
fractal dimension and scale. The AFM images can be exported to STL format for 3D
printing.
Author: Mathieu Beauvais [aut, cre],
Irma Liascukiene [aut],
Jessem Landoulsi [aut]
Maintainer: Mathieu Beauvais <beauvais.escp@gmail.com>
Diff between AFM versions 1.0.0 dated 2015-10-29 and 1.1.0 dated 2015-12-01
CHANGES |only DESCRIPTION | 13 MD5 | 55 NAMESPACE | 4 R/AFM3DPrinter.R | 23 R/AFMFractalDimensionAnalyser.R | 97 + R/AFMImage.R | 18 R/AFMImageAnalyser.R | 90 - R/AFMPSDAnalyser.R | 282 +++- R/AFMReportMaker.R | 631 +++++----- R/AFMVariogramAnalyser.R | 215 ++- man/AFMFractalDimensionAnalyser-getFractalDimensions.Rd | 6 man/AFMImage-sampleAFMImage.Rd | 4 man/AFMImageAnalyser-class-initialize.Rd | 6 man/AFMImageAnalyser-class.Rd | 4 man/AFMImageFractalDimensionsAnalysis-class.Rd | 2 man/AFMImagePSDAnalysis-class.Rd | 44 man/AFMImageVariogramAnalyser-calculateDirectionalVariograms.Rd | 11 man/AFMImageVariogramAnalyser-calculateOmnidirectionalVariogram.Rd | 11 man/AFMImageVariogramAnalysis-class.Rd | 22 man/AFMImageVariogramAnalysis-evaluateVariogramModels-method.Rd | 12 man/AFMImageVariogramAnalysis-updateProgress-method.Rd |only man/AFMVariogramAnalyser-getSpplotFromAFMImage.Rd |only man/PSD1DAgainstFrequency-methods.Rd | 6 man/PSD2DAgainstFrequency-methods.Rd | 6 man/RoughnessByLengthScale-methods.Rd | 12 man/analyse.Rd | 9 man/checkIsotropy.Rd | 7 man/generateAFMImageReport.Rd | 6 man/performAllPSDCalculation.Rd |only man/printVariogramModelEvaluations.Rd |only 31 files changed, 1075 insertions(+), 521 deletions(-)
Title: Statistical Comparison of Multiple Algorithms in Multiple
Problems
Description: Given a matrix with results of different algorithms for different problems, the package uses statistical tests and corrections to assess the differences between algorithms.
Author: Borja Calvo [aut, cre],
Guzman Santafe [aut]
Maintainer: Borja Calvo <borja.calvo@ehu.eus>
Diff between scmamp versions 0.2.3 dated 2015-10-01 and 0.2.4 dated 2015-12-01
scmamp-0.2.3/scmamp/README.md |only scmamp-0.2.4/scmamp/DESCRIPTION | 10 - scmamp-0.2.4/scmamp/MD5 | 35 ++--- scmamp-0.2.4/scmamp/R/latex.R | 68 +++++++--- scmamp-0.2.4/scmamp/R/scmamp.R | 4 scmamp-0.2.4/scmamp/R/sysdata.rda |binary scmamp-0.2.4/scmamp/build/vignette.rds |binary scmamp-0.2.4/scmamp/data/data_blum_2015.RData |binary scmamp-0.2.4/scmamp/data/data_gh_2008.RData |binary scmamp-0.2.4/scmamp/data/data_gh_2010.RData |binary scmamp-0.2.4/scmamp/inst/CITATION | 24 +-- scmamp-0.2.4/scmamp/inst/doc/Data_loading_and_manipulation.R | 12 - scmamp-0.2.4/scmamp/inst/doc/Data_loading_and_manipulation.Rmd | 2 scmamp-0.2.4/scmamp/inst/doc/Data_loading_and_manipulation.html | 35 +---- scmamp-0.2.4/scmamp/inst/doc/Statistical_assessment_of_the_differences.R | 2 scmamp-0.2.4/scmamp/inst/doc/Statistical_assessment_of_the_differences.Rmd | 2 scmamp-0.2.4/scmamp/inst/doc/Statistical_assessment_of_the_differences.html | 48 +++---- scmamp-0.2.4/scmamp/man/writeTabular.Rd | 20 ++ scmamp-0.2.4/scmamp/vignettes/Data_loading_and_manipulation.Rmd | 2 19 files changed, 156 insertions(+), 108 deletions(-)
Title: International Assessment Data Manager
Description:
Provides tools for importing, merging, and analysing data from
international assessment studies (TIMSS, PIRLS, PISA. ICILS, and PIAAC).
Author: Daniel Caro <daniel.caro@education.ox.ac.uk>, Przemyslaw Biecek <przemyslaw.biecek@gmail.com>
Maintainer: Daniel Caro <daniel.caro@education.ox.ac.uk>
Diff between intsvy versions 1.7 dated 2015-07-28 and 1.8 dated 2015-12-01
DESCRIPTION | 14 MD5 | 249 +++--- NAMESPACE | 159 ++-- R/adj.input.R | 22 R/adj.measlev.R | 12 R/intsvy.ben.pv.R |only R/intsvy.config.R |only R/intsvy.log.R |only R/intsvy.log.pv.R |only R/intsvy.mean.R |only R/intsvy.mean.pv.R |only R/intsvy.per.pv.R |only R/intsvy.reg.R |only R/intsvy.reg.pv.R |only R/intsvy.rho.R |only R/intsvy.rho.pv.R |only R/intsvy.select.merge.R |only R/intsvy.table.R |only R/intsvy.var.label.R |only R/is.vlabeled.R | 24 R/piaac.ben.pv.R | 69 - R/piaac.mean.R | 36 R/piaac.mean.pv.R | 19 R/piaac.reg.R | 50 - R/piaac.reg.pv.R | 75 - R/piaac.table.R | 23 R/pirls.ben.pv.R | 51 - R/pirls.log.R | 78 -- R/pirls.log.pv.R | 89 -- R/pirls.mean.R | 36 R/pirls.mean.pv.R | 59 - R/pirls.per.pv.R | 64 - R/pirls.reg.R | 58 - R/pirls.reg.pv.R | 74 - R/pirls.rho.R | 37 R/pirls.rho.pv.R | 80 -- R/pirls.select.merge.R | 239 ------ R/pirls.table.R | 47 - R/pirls.var.label.R | 48 - R/pisa.ben.pv.R | 70 - R/pisa.log.R | 75 - R/pisa.log.pv.R | 94 -- R/pisa.mean.R | 43 - R/pisa.mean.pv.R | 87 -- R/pisa.per.pv.R | 60 - R/pisa.reg.R | 58 - R/pisa.reg.pv.R | 79 -- R/pisa.rho.R | 37 R/pisa.table.R | 64 - R/pisa.var.label.R | 94 +- R/plot.intsvy.mean.R | 72 - R/plot.intsvy.reg.R | 2 R/plot.intsvy.table.R | 110 +- R/surv_conf.R |only R/sysdata.rda |binary R/timss.ben.pv.R | 50 - R/timss.log.R | 78 -- R/timss.log.pv.R | 91 -- R/timss.mean.R | 34 R/timss.mean.pv.R | 60 - R/timss.per.pv.R | 66 - R/timss.reg.R | 60 - R/timss.reg.pv.R | 74 - R/timss.rho.R | 37 R/timss.rho.pv.R | 80 -- R/timss.table.R | 47 - R/timssg4.select.merge.R | 247 ------ R/timssg4.var.label.R | 47 - R/timssg8.select.merge.R | 193 ----- R/timssg8.var.label.R | 44 - README.md | 34 data |only man/adj.input.Rd | 72 - man/adj.measlev.Rd | 76 +- man/confs.Rd |only man/intsvy-package.Rd | 8 man/intsvy.ben.pv.Rd |only man/intsvy.config.Rd |only man/intsvy.log.Rd |only man/intsvy.log.pv.Rd |only man/intsvy.mean.Rd |only man/intsvy.mean.pv.Rd |only man/intsvy.per.pv.Rd |only man/intsvy.reg.Rd |only man/intsvy.reg.pv.Rd |only man/intsvy.rho.Rd |only man/intsvy.rho.pv.Rd |only man/intsvy.select.merge.Rd |only man/intsvy.table.Rd |only man/intsvy.var.label.Rd |only man/is.vlabeled.Rd | 72 - man/piaac.ben.pv.Rd | 109 +- man/piaac.mean.Rd | 94 +- man/piaac.mean.pv.Rd | 96 +- man/piaac.reg.Rd | 100 +- man/piaac.reg.pv.Rd | 106 +- man/piaac.table.Rd | 94 +- man/pirls.ben.pv.Rd | 106 +- man/pirls.log.Rd | 30 man/pirls.log.pv.Rd | 21 man/pirls.mean.Rd | 97 +- man/pirls.mean.pv.Rd | 101 +- man/pirls.per.pv.Rd | 13 man/pirls.reg.Rd | 5 man/pirls.reg.pv.Rd | 5 man/pirls.rho.Rd | 95 +- man/pirls.rho.pv.Rd | 99 +- man/pirls.select.merge.Rd | 24 man/pirls.table.Rd | 95 +- man/pirls.var.label.Rd | 74 - man/pisa.ben.pv.Rd | 96 +- man/pisa.log.Rd | 32 man/pisa.log.pv.Rd | 24 man/pisa.mean.Rd | 107 +- man/pisa.mean.pv.Rd | 113 +- man/pisa.per.pv.Rd | 21 man/pisa.reg.Rd | 9 man/pisa.reg.pv.Rd | 5 man/pisa.rho.Rd | 23 man/pisa.select.merge.Rd | 118 +-- man/pisa.table.Rd | 96 +- man/pisa.var.label.Rd | 96 +- man/plot.intsvy.mean.Rd | 134 +-- man/plot.intsvy.reg.Rd | 8 man/plot.intsvy.table.Rd | 114 +-- man/timss.ben.pv.Rd | 112 +- man/timss.log.Rd | 32 man/timss.log.pv.Rd | 21 man/timss.mean.Rd | 103 +- man/timss.mean.pv.Rd | 103 +- man/timss.per.pv.Rd | 15 man/timss.reg.Rd | 5 man/timss.reg.pv.Rd | 5 man/timss.rho.Rd | 95 +- man/timss.rho.pv.Rd | 99 +- man/timss.table.Rd | 115 +-- man/timssg4.var.label.Rd | 70 - man/timssg8.var.label.Rd | 72 - vignettes/piaac.html | 652 ++++++++--------- vignettes/piaacProficiencyLevels.Rmd | 80 +- vignettes/piaacProficiencyLevels.html | 1288 +++++++++++++++++----------------- 141 files changed, 3362 insertions(+), 5992 deletions(-)
Title: R for Amplicon-Sequencing-Based Microbial-Ecology
Description: Characterizing environmental microbiota diversity using amplicon-based next generation sequencing (NGS) data. Functions are developed to manipulate operational taxonomic unit (OTU) table, perform descriptive and inferential statistics, and generate publication-quality plots.
Author: Wen Chen, Joshua Simpson, C. Andre Levesque
Maintainer: Wen Chen <Wen.Chen@agr.gc.ca>
Diff between RAM versions 1.2.1 dated 2015-05-23 and 1.2.1.2 dated 2015-12-01
ChangeLog | 16 + DESCRIPTION | 20 + MD5 | 36 +-- NAMESPACE | 53 ++--- NEWS | 53 +++++ R/group.Taxa.R | 458 +++++++++++++++++++++++--------------------- R/internal_functions.R | 31 -- R/ordination_functions.R | 18 - R/process_data.R | 2 R/seq_var.R | 48 +++- R/summary.R | 174 ++++++++-------- R/taxonomy_functions.R | 126 ++++++------ R/utility_function.R | 4 build/RAM.pdf |binary inst/CITATION | 7 man/group.Taxa.bar.Rd | 23 +- man/group.Taxa.box.Rd | 5 man/group.abundance.meta.Rd | 2 man/seq_var.Rd | 8 19 files changed, 607 insertions(+), 477 deletions(-)
Title: Genetic Analysis of Populations with Mixed Reproduction
Description: Population genetic analyses for hierarchical analysis of partially
clonal populations built upon the architecture of the 'adegenet' package.
Author: Zhian N. Kamvar [cre, aut],
Javier F. Tabima [aut],
Sydney E. Everhart [ctb, dtc],
Jonah C. Brooks [aut],
Stacy A. Krueger-Hadfield [ctb],
Erik Sotka [ctb],
Niklaus J. Grunwald [ths]
Maintainer: Zhian N. Kamvar <kamvarz@science.oregonstate.edu>
Diff between poppr versions 2.0.2 dated 2015-07-18 and 2.1.0 dated 2015-12-01
poppr-2.0.2/poppr/R/global_memory.R |only poppr-2.0.2/poppr/man/bitwise.IA.Rd |only poppr-2.0.2/poppr/man/snpclone-class.Rd |only poppr-2.0.2/poppr/vignettes/simulated_dist_fig.pdf |only poppr-2.0.2/poppr/vignettes/simulated_param_fig.pdf |only poppr-2.1.0/poppr/DESCRIPTION | 18 poppr-2.1.0/poppr/MD5 | 276 +-- poppr-2.1.0/poppr/NAMESPACE | 23 poppr-2.1.0/poppr/NEWS | 557 +++++-- poppr-2.1.0/poppr/R/Index_calculations.r | 21 poppr-2.1.0/poppr/R/aaaMLGclass.R | 50 poppr-2.1.0/poppr/R/aaaMLGmethods.R | 253 +++ poppr-2.1.0/poppr/R/amova.r | 172 +- poppr-2.1.0/poppr/R/bitwise.r | 286 +-- poppr-2.1.0/poppr/R/bootstraping.R | 82 - poppr-2.1.0/poppr/R/bruvo.r | 80 - poppr-2.1.0/poppr/R/classes.r | 96 - poppr-2.1.0/poppr/R/data_subset.r | 45 poppr-2.1.0/poppr/R/deprecated.R | 4 poppr-2.1.0/poppr/R/distances.r | 22 poppr-2.1.0/poppr/R/file_handling.r | 24 poppr-2.1.0/poppr/R/filter_stats.R | 89 - poppr-2.1.0/poppr/R/global_memory.r |only poppr-2.1.0/poppr/R/imsn.R | 4 poppr-2.1.0/poppr/R/internal.r | 552 +++++-- poppr-2.1.0/poppr/R/internal_methods.R | 4 poppr-2.1.0/poppr/R/messages.r | 4 poppr-2.1.0/poppr/R/methods.r | 166 +- poppr-2.1.0/poppr/R/mlg.r | 10 poppr-2.1.0/poppr/R/poppr.R | 20 poppr-2.1.0/poppr/R/print_methods.r | 27 poppr-2.1.0/poppr/R/round_robin.R |only poppr-2.1.0/poppr/R/sample_schemes.r | 4 poppr-2.1.0/poppr/R/sandbox.r | 69 poppr-2.1.0/poppr/R/visualizations.r | 283 ++- poppr-2.1.0/poppr/R/zzz.r | 17 poppr-2.1.0/poppr/README.md | 62 poppr-2.1.0/poppr/build/vignette.rds |binary poppr-2.1.0/poppr/data/Aeut.rda |binary poppr-2.1.0/poppr/data/Pinf.rda |binary poppr-2.1.0/poppr/data/Pram.rda |binary poppr-2.1.0/poppr/data/monpop.rda |binary poppr-2.1.0/poppr/data/partial_clone.rda |binary poppr-2.1.0/poppr/inst/CITATION | 3 poppr-2.1.0/poppr/inst/doc/algo.R | 2 poppr-2.1.0/poppr/inst/doc/algo.Rnw | 57 poppr-2.1.0/poppr/inst/doc/algo.pdf |binary poppr-2.1.0/poppr/inst/doc/how_to_migrate.pdf |binary poppr-2.1.0/poppr/inst/doc/mlg.html | 36 poppr-2.1.0/poppr/inst/doc/poppr_manual.R | 4 poppr-2.1.0/poppr/inst/doc/poppr_manual.Rnw | 19 poppr-2.1.0/poppr/inst/doc/poppr_manual.pdf |binary poppr-2.1.0/poppr/man/Aeut.Rd | 8 poppr-2.1.0/poppr/man/MLG-accessors.Rd |only poppr-2.1.0/poppr/man/MLG-class.Rd | 45 poppr-2.1.0/poppr/man/MLG-method.Rd | 11 poppr-2.1.0/poppr/man/Pinf.Rd | 22 poppr-2.1.0/poppr/man/Pram.Rd | 53 poppr-2.1.0/poppr/man/aboot.Rd | 121 - 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Title: Pedometric Tools and Techniques
Description: Functions to employ many of the tools and techniques used in the
field of pedometrics.
Author: Alessandro Samuel-Rosa [aut, cre],
Lúcia Anjos [ths],
Gustavo Vasques [ths],
Gerard Heuvelink [ths],
Tony Olsen [ctb],
Tom Kincaid [ctb],
Juan Carlos Ruiz Cuetos [ctb],
Maria Eugenia Polo Garcia [ctb],
Pablo Garcia Rodriguez [ctb],
Joshua French [ctb],
Ken Kleinman [ctb],
Dick Brus [ctb],
Frank Harrell Jr [ctb],
Ruo Xu [ctb]
Maintainer: Alessandro Samuel-Rosa <alessandrosamuelrosa@gmail.com>
Diff between pedometrics versions 0.6-4 dated 2015-11-28 and 0.6-5 dated 2015-12-01
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- R/pedometrics.R | 4 ++-- R/vgmLags.R | 15 ++------------- man/pedometrics-package.Rd | 4 ++-- 5 files changed, 16 insertions(+), 27 deletions(-)
Title: Visualization and Analysis Tools for Neural Networks
Description: Visualization and analysis tools to aid in the interpretation of
neural network models. Functions are available for plotting,
quantifying variable importance, conducting a sensitivity analysis, and
obtaining a simple list of model weights.
Author: Marcus W. Beck [aut, cre]
Maintainer: Marcus W. Beck <mbafs2012@gmail.com>
Diff between NeuralNetTools versions 1.3.1 dated 2015-04-27 and 1.4.0 dated 2015-12-01
DESCRIPTION | 11 MD5 | 42 - NAMESPACE | 21 R/NeuralNetTools_gar.R | 398 ++----------- R/NeuralNetTools_lek.R | 329 +++++------ R/NeuralNetTools_neuraldat.R | 5 R/NeuralNetTools_old.R | 437 +++----------- R/NeuralNetTools_plot.R | 1277 +++++-------------------------------------- R/NeuralNetTools_utils.R | 473 ++++++++++++++- README.md | 6 data/neuraldat.RData |binary man/bias_lines.Rd |only man/bias_points.Rd |only man/garson.Rd | 41 - man/get_ys.Rd |only man/layer_lines.Rd |only man/layer_points.Rd |only man/lekgrps.Rd |only man/lekprofile.Rd | 76 +- man/neuraldat.Rd | 4 man/neuralskips.Rd | 6 man/neuralweights.Rd | 13 man/olden.Rd | 54 - man/plotnet.Rd | 100 ++- man/pred_sens.Rd | 14 25 files changed, 1189 insertions(+), 2118 deletions(-)
More information about NeuralNetTools at CRAN
Permanent link
Title: Mixture and Flexible Discriminant Analysis
Description: Mixture and flexible discriminant analysis, multivariate
adaptive regression splines (MARS), BRUTO, ...
Author: S original by Trevor Hastie & Robert Tibshirani. Original R port by Friedrich Leisch, Kurt Hornik and Brian D. Ripley.
Maintainer: Trevor Hastie <hastie@stanford.edu>
Diff between mda versions 0.4-7 dated 2015-05-25 and 0.4-8 dated 2015-12-01
DESCRIPTION | 8 ++++---- MD5 | 11 +++++++---- NAMESPACE | 5 +++++ data/glass.rda |binary src/mspline.f | 4 +++- src/rat/README |only src/rat/sspl00.r |only src/sspl00.f90 |only 8 files changed, 19 insertions(+), 9 deletions(-)
Title: Latent Structure Learning
Description: Conduct structural equation modeling via penalized likelihood.
Author: Po-Hsien Huang [aut, cre]
Maintainer: Po-Hsien Huang <psyphh@gmail.com>
Diff between lsl versions 0.5.0 dated 2015-07-29 and 0.5.1 dated 2015-12-01
DESCRIPTION | 12 +++--- MD5 | 12 +++--- NAMESPACE | 3 + R/lsl.R | 2 - R/lslSEM.R | 65 +++++++++++++++++++++++++++++++- man/lsl.Rd | 10 ++--- man/lslSEM-class.Rd | 104 ++++++++++++++++++++++++++++++++++++++++------------ 7 files changed, 163 insertions(+), 45 deletions(-)
Title: GPU Computing in R
Description: A general framework for utilizing R to harness the power of NVIDIA GPU's. The "gmatrix" and "gvector" classes allow for easy management of the separate device and host memory spaces. Numerous numerical operations are implemented for these objects on the GPU. These operations include matrix multiplication, addition, subtraction, the kronecker product, the outer product, comparison operators, logical operators, trigonometric functions, indexing, sorting, random number generation and many more.
Author: Nathan Morris
Maintainer: Nathan Morris <njm18@case.edu>
Diff between gmatrix versions 0.2 dated 2014-08-26 and 0.3 dated 2015-12-01
gmatrix-0.2/gmatrix/man/rowLogSums.Rd |only gmatrix-0.2/gmatrix/src/Makefile |only gmatrix-0.3/gmatrix/DESCRIPTION | 18 - gmatrix-0.3/gmatrix/LICENSE |only gmatrix-0.3/gmatrix/MD5 | 66 +++-- gmatrix-0.3/gmatrix/NAMESPACE | 15 - gmatrix-0.3/gmatrix/R/00general.R | 26 +- gmatrix-0.3/gmatrix/R/01gmatrix.R | 48 ++- gmatrix-0.3/gmatrix/R/02gvector.R | 89 +++---- gmatrix-0.3/gmatrix/R/03dist.R | 2 gmatrix-0.3/gmatrix/R/04operations.R | 23 + gmatrix-0.3/gmatrix/R/05test.R | 67 ++++- gmatrix-0.3/gmatrix/R/06solve.R |only gmatrix-0.3/gmatrix/R/07MCMC.R |only gmatrix-0.3/gmatrix/README.md | 45 ++- gmatrix-0.3/gmatrix/cleanup |only gmatrix-0.3/gmatrix/configure |only gmatrix-0.3/gmatrix/configure.ac |only gmatrix-0.3/gmatrix/man/chol.Rd |only gmatrix-0.3/gmatrix/man/g.rep.Rd | 2 gmatrix-0.3/gmatrix/man/gBasicHMC.Rd |only gmatrix-0.3/gmatrix/man/gRowLogSums.Rd |only gmatrix-0.3/gmatrix/man/gmatrix-class.Rd | 3 gmatrix-0.3/gmatrix/man/gmm.Rd | 5 gmatrix-0.3/gmatrix/man/gqr-class.Rd |only gmatrix-0.3/gmatrix/man/gset.seed.Rd |only gmatrix-0.3/gmatrix/man/gsvd-class.Rd |only gmatrix-0.3/gmatrix/man/indexing-methods.Rd | 30 +- gmatrix-0.3/gmatrix/man/lpgr-class.Rd |only gmatrix-0.3/gmatrix/man/rsample.Rd | 2 gmatrix-0.3/gmatrix/man/setTuningPameters.Rd | 7 gmatrix-0.3/gmatrix/src/Makefile.in |only gmatrix-0.3/gmatrix/src/conversions.cu | 15 - gmatrix-0.3/gmatrix/src/dist.cu | 203 ++++++++-------- gmatrix-0.3/gmatrix/src/fact.cu |only gmatrix-0.3/gmatrix/src/general.cu | 24 + gmatrix-0.3/gmatrix/src/gmatrix.h | 82 +++--- gmatrix-0.3/gmatrix/src/manipulation.cu | 108 ++++---- gmatrix-0.3/gmatrix/src/matrix.cu | 335 +++++++++++++++------------ gmatrix-0.3/gmatrix/src/ops.cu | 168 +++++++------ gmatrix-0.3/gmatrix/tools |only 41 files changed, 843 insertions(+), 540 deletions(-)
Title: Empirical Bayesian Lasso and Elastic Net Methods for Generalized
Linear Models
Description: Provides Empirical Bayesian Lasso and Elastic Net algorithms for variable selection and effect estimation. Key features include sparse variable selection and effect estimation via generalized linear regression models, high dimensionality with p>>n, and significant test for nonzero effects. This package outperforms other popular methods such as Lasso and Elastic Net methods in terms of Power of Detection, False Discovery Rate, and Power of Detection Grouping Effects.
Author: Anhui Huang
Maintainer: Anhui Huang <a.huang1@umiami.edu>
Diff between EBglmnet versions 3.6 dated 2014-12-14 and 4.0 dated 2015-12-01
EBglmnet-3.6/EBglmnet/data |only EBglmnet-3.6/EBglmnet/man/BASIS.Rd |only EBglmnet-3.6/EBglmnet/man/BASISbinomial.Rd |only EBglmnet-3.6/EBglmnet/man/EBelasticNet.Binomial.Rd |only EBglmnet-3.6/EBglmnet/man/EBelasticNet.BinomialCV.Rd |only EBglmnet-3.6/EBglmnet/man/EBelasticNet.Gaussian.Rd |only EBglmnet-3.6/EBglmnet/man/EBelasticNet.GaussianCV.Rd |only EBglmnet-3.6/EBglmnet/man/EBlassoNE.BinomialCV.Rd |only EBglmnet-3.6/EBglmnet/man/EBlassoNE.GaussianCV.Rd |only EBglmnet-3.6/EBglmnet/man/EBlassoNEG.Binomial.Rd |only EBglmnet-3.6/EBglmnet/man/EBlassoNEG.BinomialCV.Rd |only EBglmnet-3.6/EBglmnet/man/EBlassoNEG.Gaussian.Rd |only EBglmnet-3.6/EBglmnet/man/EBlassoNEG.GaussianCV.Rd |only EBglmnet-3.6/EBglmnet/man/y.Rd |only EBglmnet-3.6/EBglmnet/man/yBinomial.Rd |only EBglmnet-4.0/EBglmnet/DESCRIPTION | 14 ++- EBglmnet-4.0/EBglmnet/MD5 | 71 ++++++++---------- EBglmnet-4.0/EBglmnet/NAMESPACE | 3 EBglmnet-4.0/EBglmnet/R/EBelasticNet.Binomial.R | 27 +++--- EBglmnet-4.0/EBglmnet/R/EBelasticNet.BinomialCV.R | 44 ++++++----- EBglmnet-4.0/EBglmnet/R/EBelasticNet.Gaussian.R | 28 +++---- EBglmnet-4.0/EBglmnet/R/EBelasticNet.GaussianCV.R | 43 ++++++---- EBglmnet-4.0/EBglmnet/R/EBglmnet.R |only EBglmnet-4.0/EBglmnet/R/EBlassoNE.BinomialCV.R | 44 ++++++----- EBglmnet-4.0/EBglmnet/R/EBlassoNE.GaussianCV.R | 53 +++++++------ EBglmnet-4.0/EBglmnet/R/EBlassoNEG.Binomial.R | 33 ++++---- EBglmnet-4.0/EBglmnet/R/EBlassoNEG.BinomialCV.R | 56 +++++++------- EBglmnet-4.0/EBglmnet/R/EBlassoNEG.Gaussian.R | 30 +++---- EBglmnet-4.0/EBglmnet/R/EBlassoNEG.GaussianCV.R | 59 ++++++++------ EBglmnet-4.0/EBglmnet/R/cv.EBglmnet.R |only EBglmnet-4.0/EBglmnet/build |only EBglmnet-4.0/EBglmnet/inst |only EBglmnet-4.0/EBglmnet/man/EBglmnet-internal.Rd |only EBglmnet-4.0/EBglmnet/man/EBglmnet-package.Rd | 56 ++++++++------ EBglmnet-4.0/EBglmnet/man/EBglmnet.Rd |only EBglmnet-4.0/EBglmnet/man/cv.EBglmnet.Rd |only EBglmnet-4.0/EBglmnet/src/ElasticNetBinaryNEmainEff.c | 11 +- EBglmnet-4.0/EBglmnet/src/ElasticNetBinaryNeFull.c | 11 +- EBglmnet-4.0/EBglmnet/src/elasticNetLinearNeFull2.c | 6 - EBglmnet-4.0/EBglmnet/src/elasticNetLinearNeMainEff.c | 6 - EBglmnet-4.0/EBglmnet/src/fEBBinaryNegFull.c | 20 ++--- EBglmnet-4.0/EBglmnet/src/fEBBinaryNegMainEff.c | 2 EBglmnet-4.0/EBglmnet/src/fEBLinearFullFloat.c | 26 +++--- EBglmnet-4.0/EBglmnet/src/fEBLinearMainEff.c | 4 - EBglmnet-4.0/EBglmnet/vignettes |only 45 files changed, 351 insertions(+), 296 deletions(-)