Package tablaxlsx updated to version 1.0.3 with previous version 1.0.1 dated 2015-11-30

Title: Write Formatted Tables in Excel Workbooks
Description: Some functions are included in this package for writing tables in Excel format suitable for distribution.
Author: Jesus Maria Rodriguez Rodriguez
Maintainer: Jesus Maria Rodriguez Rodriguez <jesusmro@ono.com>

Diff between tablaxlsx versions 1.0.1 dated 2015-11-30 and 1.0.3 dated 2015-12-05

 DESCRIPTION          |    6 +++---
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More information about tablaxlsx at CRAN
Permanent link

New package hyfo with initial version 1.3.4
Package: hyfo
Type: Package
Title: Hydrology and Climate Forecasting
Version: 1.3.4
Date: 2015-12-5
Authors@R: person("Yuanchao", "Xu", email = "xuyuanchao37@gmail.com", role = c("aut", "cre"))
Description: Focuses on data processing and visualization in hydrology and climate forecasting. Main function includes data extraction, data downscaling, data resampling, gap filler of precipitation, bias correction of forecasting data, flexible time series plot, and spatial map generation. It is a good pre-processing and post-processing tool for hydrological and hydraulic modellers.
License: GPL-2
Depends: R (>= 3.1.0), stats (>= 3.1.3), utils(>= 3.1.3),
Imports: ggplot2 (>= 1.0.1), reshape2 (>= 1.4.1), zoo (>= 1.7-12), rgdal (>= 0.8-16), plyr (>= 1.8.3), moments (>= 0.14), lmom (>= 2.5), maps(>= 2.3-9), maptools (>= 0.8-36), rgeos (>= 0.3-8), ncdf (>= 1.6.8), MASS (>= 7.3-39), methods
Suggests: gridExtra, knitr, rmarkdown
VignetteBuilder: knitr
LazyData: true
URL: http://yuanchao-xu.github.io/hyfo/
BugReports: https://github.com/Yuanchao-Xu/hyfo/issues
Repository: CRAN
NeedsCompilation: no
Packaged: 2015-12-05 17:42:44 UTC; Yuanchao
Author: Yuanchao Xu [aut, cre]
Maintainer: Yuanchao Xu <xuyuanchao37@gmail.com>
Date/Publication: 2015-12-06 00:21:39

More information about hyfo at CRAN
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Package omics updated to version 0.1-1 with previous version 0.1-0 dated 2015-12-04

Title: '--omics' Data Analysis Toolbox
Description: A collection of functions to analyse '--omics' datasets such as DNA methylation and gene expression profiles.
Author: Gianluca Campanella [aut, cre]
Maintainer: Gianluca Campanella <gianluca@campanella.org>

Diff between omics versions 0.1-0 dated 2015-12-04 and 0.1-1 dated 2015-12-05

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More information about omics at CRAN
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New package mBvs with initial version 1.0
Package: mBvs
Type: Package
Title: Multivariate Bayesian Variable Selection Method Exploiting Dependence among Outcomes
Version: 1.0
Date: 2015-12-04
Author: Kyu Ha Lee, Mahlet G. Tadesse, Brent A. Coull
Maintainer: Kyu Ha Lee <klee@hsph.harvard.edu>
Description: Bayesian variable selection methods for data with continuous multivariate responses and multiple covariates.
License: GPL (>= 2)
Depends: R (>= 3.1.3)
LazyLoad: yes
NeedsCompilation: yes
Packaged: 2015-12-05 16:47:06 UTC; kyuhalee
Repository: CRAN
Date/Publication: 2015-12-05 18:20:09

More information about mBvs at CRAN
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Package bayesTFR updated to version 5.0-0 with previous version 4.2-0 dated 2015-07-10

Title: Bayesian Fertility Projection
Description: Making probabilistic projections of total fertility rate for all countries of the world, using a Bayesian hierarchical model.
Author: Hana Sevcikova (hanas@uw.edu), Leontine Alkema (alkema@nus.edu.sg), Adrian Raftery (raftery@uw.edu) with code contribution from Bailey Fosdick (bfosdick@uw.edu) and Patrick Gerland (gerland@un.org)
Maintainer: Hana Sevcikova <hanas@uw.edu>

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 1117 files changed, 1287 insertions(+), 1063 deletions(-)

More information about bayesTFR at CRAN
Permanent link

Package bayesLife updated to version 3.0-0 with previous version 2.2-0 dated 2015-03-12

Title: Bayesian Projection of Life Expectancy
Description: Making probabilistic projections of life expectancy for all countries of the world, using a Bayesian hierarchical model.
Author: Hana Sevcikova, Adrian Raftery; original WinBugs code written by Jennifer Chunn
Maintainer: Hana Sevcikova <hanas@uw.edu>

Diff between bayesLife versions 2.2-0 dated 2015-03-12 and 3.0-0 dated 2015-12-05

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 bayesLife-3.0-0/bayesLife/DESCRIPTION                                                     |   12 
 bayesLife-3.0-0/bayesLife/MD5                                                             | 1891 +++-------
 bayesLife-3.0-0/bayesLife/NAMESPACE                                                       |    5 
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Package sweidnumbr updated to version 0.8.2 with previous version 0.6.5 dated 2015-09-06

Title: Handling of Swedish Identity Numbers
Description: Structural handling of identity numbers used in the Swedish administration such as personal identity numbers ('personnummer') and organizational identity numbers ('organisationsnummer').
Author: Mans Magnusson and Erik Bulow
Maintainer: Mans Magnusson <mons.magnusson@gmail.com>

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Package sharpshootR updated to version 0.9.1 with previous version 0.7-2 dated 2015-02-19

Title: A Soil Survey Toolkit
Description: Miscellaneous soil data management, summary, visualization, and conversion utilities to support soil survey.
Author: USDA-NRCS Soil Survey Staff
Maintainer: Dylan Beaudette <dylan.beaudette@ca.usda.gov>

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Package rrepast updated to version 0.2 with previous version 0.1 dated 2015-11-07

Title: Invoke 'Repast Simphony' Simulation Models
Description: An R and Repast integration tool for running individual-based (IbM) simulation models developed using 'Repast Simphony' Agent-Based framework directly from R code. This package integrates 'Repast Simphony' models within R environment, making easier the tasks of running and analyzing model output data for automated parameter calibration and for carrying out uncertainty and sensitivity analysis using the power of R environment.
Author: Antonio Prestes Garcia [aut, cre], Alfonso Rodriguez-Paton [aut, ths]
Maintainer: Antonio Prestes Garcia <antonio.pgarcia@alumnos.upm.es>

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Package RedditExtractoR updated to version 2.0.2 with previous version 2.0.1 dated 2015-11-21

Title: Reddit Data Extraction Toolkit
Description: Reddit is an online bulletin board and a social networking website where registered users can submit and discuss content. This package uses Reddit API to extract Reddit data using Reddit API. Note that due to the API limitations, the number of comments that can extracted is limited to 500 per thread. The package consists of 4 functions, one for extracting relevant URLs, one for extracting features out of given URLs, one that does both together and one that constructs graphs based on the structure of a thread.
Author: Ivan Rivera <ivan.s.rivera@gmail.com>
Maintainer: Ivan Rivera <ivan.s.rivera@gmail.com>

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Package PrevMap updated to version 1.3.2 with previous version 1.3.1 dated 2015-11-25

Title: Geostatistical Modelling of Spatially Referenced Prevalence Data
Description: It provides functions for both likelihood-based and Bayesian analysis of spatially referenced prevalence data, and is also an extension of the 'geoR' package.
Author: Emanuele Giorgi, Peter J. Diggle
Maintainer: Emanuele Giorgi <e.giorgi@lancaster.ac.uk>

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Package mldr updated to version 0.3.18 with previous version 0.2.82 dated 2015-10-18

Title: Exploratory Data Analysis and Manipulation of Multi-Label Data Sets
Description: Exploratory data analysis and manipulation functions for multi- label data sets along with an interactive Shiny application to ease their use.
Author: David Charte [cre], Francisco Charte [aut]
Maintainer: David Charte <fdavidcl@outlook.com>

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 man/plus-.mldr.Rd                                   |    2 
 man/print.mldr.Rd                                   |    4 
 man/read.arff.Rd                                    |only
 man/remedial.Rd                                     |    3 
 man/sub-.mldr.Rd                                    |    4 
 man/summary.mldr.Rd                                 |    4 
 man/write_arff.Rd                                   |    3 
 35 files changed, 308 insertions(+), 167 deletions(-)

More information about mldr at CRAN
Permanent link

Package llama updated to version 0.9.1 with previous version 0.9 dated 2015-11-22

Title: Leveraging Learning to Automatically Manage Algorithms
Description: Provides functionality to train and evaluate algorithm selection models for portfolios.
Author: Lars Kotthoff [aut,cre], Bernd Bischl [aut], Barry Hurley [ctb], Talal Rahwan [ctb]
Maintainer: Lars Kotthoff <larsko@cs.ubc.ca>

Diff between llama versions 0.9 dated 2015-11-22 and 0.9.1 dated 2015-12-05

 DESCRIPTION                         |    8 ++++----
 MD5                                 |   14 +++++++-------
 NEWS                                |    4 ++++
 R/helpers.R                         |    2 +-
 inst/manual/llama.pdf               |binary
 man/input.Rd                        |   18 ++++++++----------
 tests/testthat/test.classify.R      |   11 +++++++++--
 tests/testthat/test.classifyPairs.R |    4 ++--
 8 files changed, 35 insertions(+), 26 deletions(-)

More information about llama at CRAN
Permanent link

Package git2r updated to version 0.12.1 with previous version 0.11.0 dated 2015-08-12

Title: Provides Access to Git Repositories
Description: Interface to the 'libgit2' library, which is a pure C implementation of the 'Git' core methods. Provides access to 'Git' repositories to extract data and running some basic 'Git' commands.
Author: See AUTHORS file.
Maintainer: Stefan Widgren <stefan.widgren@gmail.com>

Diff between git2r versions 0.11.0 dated 2015-08-12 and 0.12.1 dated 2015-12-05

 git2r-0.11.0/git2r/man/config-methods.Rd                        |only
 git2r-0.11.0/git2r/man/cred_ssh_key-methods.Rd                  |only
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 git2r-0.11.0/git2r/src/winhttp/winhttp-x64.def                  |only
 git2r-0.11.0/git2r/src/winhttp/winhttp.def                      |only
 git2r-0.12.1/git2r/DESCRIPTION                                  |    8 
 git2r-0.12.1/git2r/MD5                                          |  588 +++++-----
 git2r-0.12.1/git2r/NAMESPACE                                    |   12 
 git2r-0.12.1/git2r/NEWS                                         |   53 
 git2r-0.12.1/git2r/R/S4_classes.r                               |   45 
 git2r-0.12.1/git2r/R/checkout.r                                 |  141 +-
 git2r-0.12.1/git2r/R/config.r                                   |  132 +-
 git2r-0.12.1/git2r/R/credential.r                               |   98 -
 git2r-0.12.1/git2r/R/diff.r                                     |    2 
 git2r-0.12.1/git2r/R/fetch.r                                    |    3 
 git2r-0.12.1/git2r/R/index.r                                    |   93 +
 git2r-0.12.1/git2r/R/libgit2.r                                  |   17 
 git2r-0.12.1/git2r/R/pull.r                                     |   11 
 git2r-0.12.1/git2r/R/push.r                                     |    3 
 git2r-0.12.1/git2r/R/remote.r                                   |  105 +
 git2r-0.12.1/git2r/R/repository.r                               |   61 -
 git2r-0.12.1/git2r/configure                                    |  208 ++-
 git2r-0.12.1/git2r/configure.ac                                 |only
 git2r-0.12.1/git2r/configure.win                                |   19 
 git2r-0.12.1/git2r/inst/AUTHORS                                 |    1 
 git2r-0.12.1/git2r/man/add-methods.Rd                           |   51 
 git2r-0.12.1/git2r/man/add_session_info.Rd                      |    2 
 git2r-0.12.1/git2r/man/ahead_behind-methods.Rd                  |    2 
 git2r-0.12.1/git2r/man/blame-methods.Rd                         |    2 
 git2r-0.12.1/git2r/man/blob_create-methods.Rd                   |    2 
 git2r-0.12.1/git2r/man/branch_create-methods.Rd                 |    2 
 git2r-0.12.1/git2r/man/branch_delete-methods.Rd                 |    2 
 git2r-0.12.1/git2r/man/branch_get_upstream-methods.Rd           |    2 
 git2r-0.12.1/git2r/man/branch_remote_name-methods.Rd            |    2 
 git2r-0.12.1/git2r/man/branch_remote_url-methods.Rd             |    2 
 git2r-0.12.1/git2r/man/branch_rename-methods.Rd                 |    2 
 git2r-0.12.1/git2r/man/branch_set_upstream-methods.Rd           |    2 
 git2r-0.12.1/git2r/man/branch_target-methods.Rd                 |    2 
 git2r-0.12.1/git2r/man/branches-methods.Rd                      |    2 
 git2r-0.12.1/git2r/man/bundle_r_package-methods.Rd              |    2 
 git2r-0.12.1/git2r/man/checkout-methods.Rd                      |   24 
 git2r-0.12.1/git2r/man/clone-methods.Rd                         |    7 
 git2r-0.12.1/git2r/man/coerce-git_repository-method.Rd          |    2 
 git2r-0.12.1/git2r/man/coerce-git_tree-data.frame-method.Rd     |    2 
 git2r-0.12.1/git2r/man/coerce-git_tree-list-method.Rd           |    2 
 git2r-0.12.1/git2r/man/commit-methods.Rd                        |    2 
 git2r-0.12.1/git2r/man/commits-methods.Rd                       |    2 
 git2r-0.12.1/git2r/man/config.Rd                                |only
 git2r-0.12.1/git2r/man/content-methods.Rd                       |    2 
 git2r-0.12.1/git2r/man/contributions-methods.Rd                 |    2 
 git2r-0.12.1/git2r/man/cred_env-class.Rd                        |    2 
 git2r-0.12.1/git2r/man/cred_env-methods.Rd                      |   15 
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 git2r-0.12.1/git2r/man/cred_token.Rd                            |only
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 git2r-0.12.1/git2r/man/cred_user_pass-methods.Rd                |    6 
 git2r-0.12.1/git2r/man/default_signature-methods.Rd             |    2 
 git2r-0.12.1/git2r/man/descendant_of-methods.Rd                 |    2 
 git2r-0.12.1/git2r/man/diff-methods.Rd                          |    2 
 git2r-0.12.1/git2r/man/discover_repository-methods.Rd           |   37 
 git2r-0.12.1/git2r/man/fetch-methods.Rd                         |    5 
 git2r-0.12.1/git2r/man/fetch_heads-methods.Rd                   |    2 
 git2r-0.12.1/git2r/man/get_refspec.Rd                           |    2 
 git2r-0.12.1/git2r/man/git2r.Rd                                 |    2 
 git2r-0.12.1/git2r/man/git_blame-class.Rd                       |    2 
 git2r-0.12.1/git2r/man/git_blame_hunk-class.Rd                  |    2 
 git2r-0.12.1/git2r/man/git_blob-class.Rd                        |    2 
 git2r-0.12.1/git2r/man/git_branch-class.Rd                      |    2 
 git2r-0.12.1/git2r/man/git_commit-class.Rd                      |    2 
 git2r-0.12.1/git2r/man/git_diff-class.Rd                        |    2 
 git2r-0.12.1/git2r/man/git_diff_file-class.Rd                   |    2 
 git2r-0.12.1/git2r/man/git_diff_hunk-class.Rd                   |    2 
 git2r-0.12.1/git2r/man/git_diff_line-class.Rd                   |    2 
 git2r-0.12.1/git2r/man/git_fetch_head.Rd                        |    2 
 git2r-0.12.1/git2r/man/git_merge_result.Rd                      |    2 
 git2r-0.12.1/git2r/man/git_note-class.Rd                        |    2 
 git2r-0.12.1/git2r/man/git_reference-class.Rd                   |    2 
 git2r-0.12.1/git2r/man/git_reflog_entry-class.Rd                |    2 
 git2r-0.12.1/git2r/man/git_repository-class.Rd                  |    2 
 git2r-0.12.1/git2r/man/git_signature-class.Rd                   |    2 
 git2r-0.12.1/git2r/man/git_stash-class.Rd                       |    2 
 git2r-0.12.1/git2r/man/git_tag-class.Rd                         |    2 
 git2r-0.12.1/git2r/man/git_time-class.Rd                        |    2 
 git2r-0.12.1/git2r/man/git_transfer_progress-class.Rd           |    2 
 git2r-0.12.1/git2r/man/git_tree-class.Rd                        |    2 
 git2r-0.12.1/git2r/man/hash-methods.Rd                          |    2 
 git2r-0.12.1/git2r/man/hashfile-methods.Rd                      |    2 
 git2r-0.12.1/git2r/man/head-methods.Rd                          |    2 
 git2r-0.12.1/git2r/man/in_repository-methods.Rd                 |    2 
 git2r-0.12.1/git2r/man/init-methods.Rd                          |    2 
 git2r-0.12.1/git2r/man/is_bare-methods.Rd                       |    2 
 git2r-0.12.1/git2r/man/is_binary-methods.Rd                     |    2 
 git2r-0.12.1/git2r/man/is_blob.Rd                               |    2 
 git2r-0.12.1/git2r/man/is_commit.Rd                             |    2 
 git2r-0.12.1/git2r/man/is_detached-methods.Rd                   |    2 
 git2r-0.12.1/git2r/man/is_empty-methods.Rd                      |    2 
 git2r-0.12.1/git2r/man/is_head-methods.Rd                       |    2 
 git2r-0.12.1/git2r/man/is_local-methods.Rd                      |    2 
 git2r-0.12.1/git2r/man/is_merge-methods.Rd                      |    2 
 git2r-0.12.1/git2r/man/is_shallow-methods.Rd                    |    2 
 git2r-0.12.1/git2r/man/length-git_blob-method.Rd                |    2 
 git2r-0.12.1/git2r/man/length-git_diff-method.Rd                |    3 
 git2r-0.12.1/git2r/man/length-git_tree-method.Rd                |    2 
 git2r-0.12.1/git2r/man/libgit2_features.Rd                      |    2 
 git2r-0.12.1/git2r/man/libgit2_sha.Rd                           |    2 
 git2r-0.12.1/git2r/man/libgit2_version.Rd                       |    2 
 git2r-0.12.1/git2r/man/lookup-methods.Rd                        |    2 
 git2r-0.12.1/git2r/man/lookup_repository.Rd                     |    2 
 git2r-0.12.1/git2r/man/merge-methods.Rd                         |    2 
 git2r-0.12.1/git2r/man/merge_base-methods.Rd                    |    2 
 git2r-0.12.1/git2r/man/merge_branch.Rd                          |    2 
 git2r-0.12.1/git2r/man/merge_named_branch.Rd                    |    2 
 git2r-0.12.1/git2r/man/note_create-methods.Rd                   |    2 
 git2r-0.12.1/git2r/man/note_default_ref-methods.Rd              |    2 
 git2r-0.12.1/git2r/man/note_remove-methods.Rd                   |    2 
 git2r-0.12.1/git2r/man/notes-methods.Rd                         |    2 
 git2r-0.12.1/git2r/man/odb_blobs-methods.Rd                     |    2 
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 git2r-0.12.1/git2r/man/parents-methods.Rd                       |    2 
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 git2r-0.12.1/git2r/man/punch_card-methods.Rd                    |    2 
 git2r-0.12.1/git2r/man/push-methods.Rd                          |    5 
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 git2r-0.12.1/git2r/man/reset-methods.Rd                         |    2 
 git2r-0.12.1/git2r/man/revparse_single-methods.Rd               |    2 
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 git2r-0.12.1/git2r/man/tag-methods.Rd                           |    2 
 git2r-0.12.1/git2r/man/tags-methods.Rd                          |    2 
 git2r-0.12.1/git2r/man/tree-index-methods.Rd                    |    2 
 git2r-0.12.1/git2r/man/tree-methods.Rd                          |    2 
 git2r-0.12.1/git2r/man/when-methods.Rd                          |    2 
 git2r-0.12.1/git2r/man/workdir-methods.Rd                       |    2 
 git2r-0.12.1/git2r/src/Makevars.in                              |   60 -
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 git2r-0.12.1/git2r/src/git2r.c                                  |    6 
 git2r-0.12.1/git2r/src/git2r_arg.c                              |    6 
 git2r-0.12.1/git2r/src/git2r_checkout.c                         |   60 +
 git2r-0.12.1/git2r/src/git2r_checkout.h                         |    1 
 git2r-0.12.1/git2r/src/git2r_config.c                           |   83 -
 git2r-0.12.1/git2r/src/git2r_cred.c                             |   52 
 git2r-0.12.1/git2r/src/git2r_error.c                            |    2 
 git2r-0.12.1/git2r/src/git2r_error.h                            |    1 
 git2r-0.12.1/git2r/src/git2r_libgit2.c                          |   38 
 git2r-0.12.1/git2r/src/git2r_libgit2.h                          |    1 
 git2r-0.12.1/git2r/src/git2r_remote.c                           |  111 +
 git2r-0.12.1/git2r/src/git2r_remote.h                           |    2 
 git2r-0.12.1/git2r/src/git2r_repository.c                       |   18 
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 git2r-0.12.1/git2r/src/libgit2/attr_file.c                      |    6 
 git2r-0.12.1/git2r/src/libgit2/attrcache.c                      |    5 
 git2r-0.12.1/git2r/src/libgit2/blame.c                          |    2 
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 git2r-0.12.1/git2r/src/libgit2/blame_git.h                      |    2 
 git2r-0.12.1/git2r/src/libgit2/checkout.c                       |   59 -
 git2r-0.12.1/git2r/src/libgit2/commit.c                         |   35 
 git2r-0.12.1/git2r/src/libgit2/commit_list.c                    |    8 
 git2r-0.12.1/git2r/src/libgit2/commit_list.h                    |    3 
 git2r-0.12.1/git2r/src/libgit2/common.h                         |    9 
 git2r-0.12.1/git2r/src/libgit2/config.c                         |   46 
 git2r-0.12.1/git2r/src/libgit2/config.h                         |   16 
 git2r-0.12.1/git2r/src/libgit2/config_file.c                    |  151 ++
 git2r-0.12.1/git2r/src/libgit2/config_file.h                    |   10 
 git2r-0.12.1/git2r/src/libgit2/curl_stream.c                    |    1 
 git2r-0.12.1/git2r/src/libgit2/diff.c                           |  123 +-
 git2r-0.12.1/git2r/src/libgit2/diff_driver.c                    |   13 
 git2r-0.12.1/git2r/src/libgit2/diff_file.c                      |   25 
 git2r-0.12.1/git2r/src/libgit2/diff_patch.c                     |    4 
 git2r-0.12.1/git2r/src/libgit2/diff_print.c                     |    2 
 git2r-0.12.1/git2r/src/libgit2/diff_tform.c                     |    6 
 git2r-0.12.1/git2r/src/libgit2/diff_xdiff.c                     |    7 
 git2r-0.12.1/git2r/src/libgit2/diff_xdiff.h                     |    5 
 git2r-0.12.1/git2r/src/libgit2/filebuf.c                        |   84 +
 git2r-0.12.1/git2r/src/libgit2/fileops.c                        |  308 +++--
 git2r-0.12.1/git2r/src/libgit2/fileops.h                        |   20 
 git2r-0.12.1/git2r/src/libgit2/idxmap.h                         |only
 git2r-0.12.1/git2r/src/libgit2/ignore.c                         |   16 
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 git2r-0.12.1/git2r/src/libgit2/include/git2/cred_helpers.h      |    2 
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 git2r-0.12.1/git2r/src/libgit2/include/git2/errors.h            |    1 
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 git2r-0.12.1/git2r/src/libgit2/include/git2/remote.h            |   13 
 git2r-0.12.1/git2r/src/libgit2/include/git2/sys/config.h        |   14 
 git2r-0.12.1/git2r/src/libgit2/include/git2/sys/odb_backend.h   |    4 
 git2r-0.12.1/git2r/src/libgit2/include/git2/sys/refdb_backend.h |    4 
 git2r-0.12.1/git2r/src/libgit2/include/git2/sys/stream.h        |   13 
 git2r-0.12.1/git2r/src/libgit2/include/git2/sys/transport.h     |   28 
 git2r-0.12.1/git2r/src/libgit2/include/git2/transport.h         |   11 
 git2r-0.12.1/git2r/src/libgit2/index.c                          |  428 +++++--
 git2r-0.12.1/git2r/src/libgit2/index.h                          |    2 
 git2r-0.12.1/git2r/src/libgit2/iterator.c                       |  500 ++++++--
 git2r-0.12.1/git2r/src/libgit2/iterator.h                       |   48 
 git2r-0.12.1/git2r/src/libgit2/merge.c                          |  381 ++++--
 git2r-0.12.1/git2r/src/libgit2/merge_file.c                     |   98 +
 git2r-0.12.1/git2r/src/libgit2/notes.c                          |    2 
 git2r-0.12.1/git2r/src/libgit2/odb.c                            |  246 ++--
 git2r-0.12.1/git2r/src/libgit2/odb_loose.c                      |    4 
 git2r-0.12.1/git2r/src/libgit2/odb_mempack.c                    |    8 
 git2r-0.12.1/git2r/src/libgit2/odb_pack.c                       |   82 -
 git2r-0.12.1/git2r/src/libgit2/oidmap.h                         |    2 
 git2r-0.12.1/git2r/src/libgit2/openssl_stream.c                 |    7 
 git2r-0.12.1/git2r/src/libgit2/pack-objects.c                   |    3 
 git2r-0.12.1/git2r/src/libgit2/path.c                           |   23 
 git2r-0.12.1/git2r/src/libgit2/path.h                           |    8 
 git2r-0.12.1/git2r/src/libgit2/pathspec.c                       |   36 
 git2r-0.12.1/git2r/src/libgit2/pool.c                           |  241 ----
 git2r-0.12.1/git2r/src/libgit2/pool.h                           |   54 
 git2r-0.12.1/git2r/src/libgit2/push.c                           |    3 
 git2r-0.12.1/git2r/src/libgit2/push.h                           |    1 
 git2r-0.12.1/git2r/src/libgit2/refdb.c                          |    8 
 git2r-0.12.1/git2r/src/libgit2/refdb_fs.c                       |   16 
 git2r-0.12.1/git2r/src/libgit2/remote.c                         |   46 
 git2r-0.12.1/git2r/src/libgit2/repository.c                     |   55 
 git2r-0.12.1/git2r/src/libgit2/revwalk.c                        |    6 
 git2r-0.12.1/git2r/src/libgit2/signature.c                      |   18 
 git2r-0.12.1/git2r/src/libgit2/sortedcache.c                    |    5 
 git2r-0.12.1/git2r/src/libgit2/stash.c                          |   29 
 git2r-0.12.1/git2r/src/libgit2/stream.h                         |    3 
 git2r-0.12.1/git2r/src/libgit2/submodule.c                      |  406 ++++--
 git2r-0.12.1/git2r/src/libgit2/sysdir.c                         |   19 
 git2r-0.12.1/git2r/src/libgit2/sysdir.h                         |   14 
 git2r-0.12.1/git2r/src/libgit2/tls_stream.c                     |   13 
 git2r-0.12.1/git2r/src/libgit2/transaction.c                    |   44 
 git2r-0.12.1/git2r/src/libgit2/transaction.h                    |only
 git2r-0.12.1/git2r/src/libgit2/transports/cred.c                |    8 
 git2r-0.12.1/git2r/src/libgit2/transports/git.c                 |   11 
 git2r-0.12.1/git2r/src/libgit2/transports/http.c                |   16 
 git2r-0.12.1/git2r/src/libgit2/transports/smart.c               |   95 +
 git2r-0.12.1/git2r/src/libgit2/transports/smart.h               |    1 
 git2r-0.12.1/git2r/src/libgit2/transports/smart_pkt.c           |   11 
 git2r-0.12.1/git2r/src/libgit2/transports/smart_protocol.c      |    2 
 git2r-0.12.1/git2r/src/libgit2/transports/ssh.c                 |    4 
 git2r-0.12.1/git2r/src/libgit2/transports/winhttp.c             |   18 
 git2r-0.12.1/git2r/src/libgit2/unix/posix.h                     |   15 
 git2r-0.12.1/git2r/src/libgit2/util.c                           |   26 
 git2r-0.12.1/git2r/src/libgit2/win32/findfile.c                 |   10 
 git2r-0.12.1/git2r/src/libgit2/win32/findfile.h                 |    1 
 git2r-0.12.1/git2r/src/libgit2/win32/path_w32.c                 |   23 
 git2r-0.12.1/git2r/src/libgit2/win32/posix_w32.c                |   11 
 git2r-0.12.1/git2r/src/libgit2/win32/w32_util.c                 |   34 
 git2r-0.12.1/git2r/src/libgit2/win32/w32_util.h                 |   16 
 git2r-0.12.1/git2r/src/libgit2/xdiff/xdiff.h                    |    8 
 git2r-0.12.1/git2r/src/libgit2/xdiff/xdiffi.c                   |   12 
 git2r-0.12.1/git2r/src/libgit2/xdiff/xhistogram.c               |    6 
 git2r-0.12.1/git2r/src/libgit2/xdiff/xmerge.c                   |  142 +-
 git2r-0.12.1/git2r/src/winhttp/winhttp32.def.in                 |only
 git2r-0.12.1/git2r/src/winhttp/winhttp64.def.in                 |only
 git2r-0.12.1/git2r/tests/blame.R                                |   12 
 git2r-0.12.1/git2r/tests/checkout.R                             |   28 
 git2r-0.12.1/git2r/tests/checkout_branch.R                      |    2 
 git2r-0.12.1/git2r/tests/config.R                               |   24 
 git2r-0.12.1/git2r/tests/diff.R                                 |   25 
 git2r-0.12.1/git2r/tests/fetch.R                                |   18 
 git2r-0.12.1/git2r/tests/index.R                                |    2 
 git2r-0.12.1/git2r/tests/note.R                                 |   20 
 git2r-0.12.1/git2r/tests/pre-process-path.R                     |only
 git2r-0.12.1/git2r/tests/reflog.R                               |   14 
 git2r-0.12.1/git2r/tests/remotes.R                              |   31 
 git2r-0.12.1/git2r/tests/repository.R                           |    7 
 git2r-0.12.1/git2r/tests/reset.R                                |   20 
 git2r-0.12.1/git2r/tests/signature.R                            |    2 
 git2r-0.12.1/git2r/tests/status.R                               |   31 
 git2r-0.12.1/git2r/tests/time.R                                 |    5 
 git2r-0.12.1/git2r/tests/when.R                                 |    2 
 304 files changed, 4903 insertions(+), 2451 deletions(-)

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Package CorrMixed updated to version 0.1-12 with previous version 0.1-11 dated 2015-05-08

Title: Estimate Correlations Between Repeatedly Measured Endpoints (E.g., Reliability) Based on Linear Mixed-Effects Models
Description: In clinical practice and research settings in medicine and the behavioral sciences, it is often of interest to quantify the correlation of a continuous endpoint that was repeatedly measured (e.g., test-retest correlations, ICC, etc.). This package allows for estimating these correlations based on mixed-effects models. Part of this software has been developed using funding provided from the European Union's 7th Framework Programme for research, technological development and demonstration under Grant Agreement no 602552.
Author: Wim Van der Elst, Geert Molenberghs, Dieter Hilgers, & Nicole Heussen
Maintainer: Wim Van der Elst <Wim.vanderelst@gmail.com>

Diff between CorrMixed versions 0.1-11 dated 2015-05-08 and 0.1-12 dated 2015-12-05

 DESCRIPTION                 |    8 ++++----
 MD5                         |   22 +++++++++++-----------
 NAMESPACE                   |   31 +++++++++++++++++++++++++++++++
 man/Explore.WS.Corr.Rd      |    2 +-
 man/Fract.Poly.Rd           |    2 +-
 man/Heatmap.Rd              |    4 ++--
 man/Model.Fit.Rd            |    2 +-
 man/Spaghetti.Plot.Rd       |    2 +-
 man/WS.Corr.Mixed.Rd        |    4 ++--
 man/WS.Corr.Mixed.SAS.Rd    |    2 +-
 man/plot.Explore.WS.Corr.Rd |    2 +-
 man/plot.WS.Corr.Mixed.Rd   |    2 +-
 12 files changed, 57 insertions(+), 26 deletions(-)

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New package connect3 with initial version 0.1.0
Package: connect3
Type: Package
Title: A Tool for Reproducible Research by Converting 'LaTeX' Files Generated by R Sweave to Rich Text Format Files
Version: 0.1.0
Depends: R (>= 3.0.2)
Date: 2015-11-30
Authors@R: c(person("Chunqiao", "Luo", email = "chunqiaoluo@gmail.com", role = c("aut", "cre")))
Maintainer: Chunqiao Luo <chunqiaoluo@gmail.com>
Description: Converts 'LaTeX' files (with extension '.tex') generated by R Sweave using package 'knitr' to Rich Text Format files (with extension '.rtf'). Rich Text Format files can be read and written by most word processors.
License: GPL
RoxygenNote: 5.0.1
Packaged: 2015-12-05 15:29:44 UTC; LuoChunqiao
Author: Chunqiao Luo [aut, cre]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-12-05 17:02:43

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