Title: Competing Risks Regression Models with Covariate-Adjusted
Censoring Weights
Description: Estimation and regression modeling of subdistribution functions for competing risks data with adjustment for covariate-dependent censoring, as described in He et al. (2015).
Author: Peng He
Maintainer: Peng He <saturnhp@gmail.com>
Diff between wtcrsk versions 1.5 dated 2015-11-28 and 1.6 dated 2015-12-06
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- man/wtcrsk-package.Rd | 4 ++-- src/p1.cc | 8 ++++---- 4 files changed, 13 insertions(+), 13 deletions(-)
Title: Plot Raster Map Tiles from Open Street Map and Other Sources
Description: Download and plot Open Street Map <http://www.openstreetmap.org/>,
Mapquest <http://www.mapquest.com/>, Bing Maps <http://www.bing.com/maps>
and other tiled map sources in a way that works seamlessly with plotting
from the 'sp' package. Use to create high-resolution basemaps and add hillshade
to vector based maps.
Author: Dewey Dunnington [aut, cre],
Timothée Giraud [ctb]
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>
Diff between rosm versions 0.1.2 dated 2015-10-20 and 0.1.3 dated 2015-12-06
DESCRIPTION | 15 ++++++++---- MD5 | 16 +++++++----- NAMESPACE | 1 R/osmplot.R | 31 +++++++++++++++++++------ R/osmraster.R |only R/osmtile.R | 16 ++++-------- R/projections.R | 63 ++++++++++++++++++++++++++++++++++++++++----------- man/osm.raster.Rd |only man/rosm-package.Rd | 20 +++++++++------- tests/manual/tests.R | 53 +++++++++++++++++++++++++++++++++++++++++- 10 files changed, 163 insertions(+), 52 deletions(-)
Title: Spatial Nonparametric Covariance Functions
Description: R functions for analyzing spatial (cross-)covariance: the
nonparametric (cross-)covariance, the spline correlogram, the
nonparametric phase coherence function, and related.
Author: Ottar N. Bjornstad <onb1@psu.edu>
Maintainer: Ottar N. Bjornstad <onb1@psu.edu>
Diff between ncf versions 1.1-5 dated 2013-11-21 and 1.1-6 dated 2015-12-06
ncf-1.1-5/ncf/TODO |only ncf-1.1-6/ncf/CHANGES | 3 ncf-1.1-6/ncf/DESCRIPTION | 12 - ncf-1.1-6/ncf/MD5 | 34 ++-- ncf-1.1-6/ncf/NAMESPACE | 11 + ncf-1.1-6/ncf/R/ncf.r | 223 +++++++++++++++++++++++++------ ncf-1.1-6/ncf/man/Sncf.Rd | 4 ncf-1.1-6/ncf/man/correlog.Rd | 6 ncf-1.1-6/ncf/man/correlog.nc.Rd | 2 ncf-1.1-6/ncf/man/gcdist.Rd | 1 ncf-1.1-6/ncf/man/lisa.Rd | 23 +-- ncf-1.1-6/ncf/man/lisa.nc.Rd | 16 +- ncf-1.1-6/ncf/man/mSynch.Rd | 2 ncf-1.1-6/ncf/man/mantel.correlog.Rd |only ncf-1.1-6/ncf/man/mantel.test.Rd | 2 ncf-1.1-6/ncf/man/partial.mantel.test.Rd | 2 ncf-1.1-6/ncf/man/plot.lisa.Rd | 22 +-- ncf-1.1-6/ncf/man/plot.lisa.nc.Rd |only ncf-1.1-6/ncf/man/spatial.plot.Rd |only ncf-1.1-6/ncf/man/spline.correlog.Rd | 6 20 files changed, 265 insertions(+), 104 deletions(-)
Title: Entropy Partitioning to Measure Diversity
Description: Measurement and partitioning of diversity, based on Tsallis entropy.
Author: Eric Marcon, Bruno Herault
Maintainer: Eric Marcon <Eric.Marcon@ecofog.gf>
Diff between entropart versions 1.4.1 dated 2015-09-28 and 1.4-3 dated 2015-12-06
DESCRIPTION | 10 +-- MD5 | 144 ++++++++++++++++++++++----------------------- NAMESPACE | 3 NEWS | 26 +++++++- R/AbdFreqCount.R | 4 - R/AllenH.R | 26 ++++++-- R/ChaoPD.R | 26 ++++++-- R/CommunityProfile.R | 10 +-- R/Coverage.R | 22 +++++- R/DivEst.R | 2 R/DivPart.R | 2 R/DivProfile.R | 6 - R/Diversity.R | 22 +++++- R/Dqz.R | 18 +++++ R/GammaEntropy.R | 6 - R/Hqz.R | 55 ++++++++++++----- R/HqzBeta.R | 15 ++-- R/Hurlbert.R | 31 +++++++-- R/HurlbertD.R | 30 +++++++-- R/MCdiversity.R | 2 R/MCentropy.R | 2 R/MetaCommunity.R | 4 - R/PDFD.R | 2 R/PhyloApply.R | 2 R/PhyloBetaEntropy.R | 4 - R/PhyloDiversity.R | 18 +++++ R/PhyloEntropy.R | 16 ++++- R/PhyloValue.R | 4 - R/Rao.R | 38 +++++++++-- R/Richness.R | 27 +++++++- R/Shannon.R | 83 +++++++++++++++++++------ R/ShannonBeta.R | 14 ++-- R/Simpson.R | 30 +++++++-- R/SimpsonBeta.R | 8 +- R/SpeciesDistribution.R | 6 - R/Tsallis.R | 87 +++++++++++++++++++++------ R/TsallisBeta.R | 18 +++-- R/lnq.R | 6 - build/vignette.rds |binary inst/doc/entropart.R | 114 ++++++++++++++++------------------- inst/doc/entropart.Rnw | 99 +++++++++++++++--------------- inst/doc/entropart.pdf |binary man/AllenH.Rd | 9 ++ man/AlphaDiversity.Rd | 4 - man/AlphaEntropy.Rd | 8 +- man/BetaDiversity.Rd | 4 - man/BetaEntropy.Rd | 8 +- man/ChaoPD.Rd | 14 ++-- man/CommunityProfile.Rd | 12 ++- man/Coverage.Rd | 4 - man/DivEst.Rd | 4 - man/Diversity.Rd | 4 - man/Dqz.Rd | 4 - man/GammaDiversity.Rd | 6 - man/GammaEntropy.Rd | 10 ++- man/Hqz.Rd | 2 man/HqzBeta.Rd | 2 man/Hurlbert.Rd | 2 man/KLq.Rd | 2 man/PDFD.Rd | 2 man/PhyloDiversity.Rd | 3 man/PhyloEntropy.Rd | 3 man/Rao.Rd | 2 man/Richness.Rd | 4 - man/Shannon.Rd | 10 +-- man/Simpson.Rd | 2 man/SimpsonBeta.Rd | 4 - man/SpeciesDistribution.Rd | 8 +- man/Tsallis.Rd | 18 +++-- man/TsallisBeta.Rd | 2 man/entropart-package.Rd | 19 +---- vignettes/entropart.Rnw | 99 +++++++++++++++--------------- vignettes/entropart.bib | 9 ++ 73 files changed, 848 insertions(+), 478 deletions(-)
Title: Performance Analysis and Companion Functions for Binary
Classification Models
Description: Provides companion function for analysing the performance of classification models. Also, provides function to optimise probability cut-off score based on used specified objectives, Plot 'ROC' Curve in 'ggplot2', 'AUROC', 'IV', 'WOE' Calculation, 'KS Statistic' etc to aid accuracy improvement in binary classification models.
Author: Selva Prabhakaran
Maintainer: Selva Prabhakaran <selva86@gmail.com>
Diff between InformationValue versions 1.1.1 dated 2015-08-27 and 1.2.1 dated 2015-12-06
DESCRIPTION | 15 MD5 | 59 + NAMESPACE | 43 - R/Main.R | 1232 ++++++++++++++++++++++------------------- R/StandAloneFuncs.R | 10 R/playground.R |only README.md | 414 ++++++------- build/vignette.rds |binary inst/doc/InformationValue.R | 134 ++-- inst/doc/InformationValue.Rmd | 424 +++++++------- inst/doc/InformationValue.html | 556 ++++++++++-------- man/AUROC.Rd | 60 - man/ActualsAndScores.Rd | 44 - man/Concordance.Rd | 72 +- man/IV.Rd | 64 +- man/SimData.Rd | 44 - man/WOE.Rd | 64 +- man/WOETable.Rd | 84 +- man/confusionMatrix.Rd | 64 +- man/kappaCohen.Rd | 64 +- man/ks_plot.Rd |only man/ks_stat.Rd |only man/misClassError.Rd | 66 +- man/npv.Rd |only man/optimalCutoff.Rd | 88 +- man/plotROC.Rd | 68 +- man/precision.Rd |only man/sensitivity.Rd | 64 +- man/somersD.Rd | 60 - man/specificity.Rd | 64 +- man/youdensIndex.Rd | 64 +- vignettes/InformationValue.Rmd | 424 +++++++------- vignettes/custom.css | 202 +++--- 33 files changed, 2409 insertions(+), 2138 deletions(-)
More information about InformationValue at CRAN
Permanent link
Title: Convenient Data Exchange with Microsoft Excel
Description: Allows access to data in running instance of Microsoft Excel
(e. g. 'xl[a1] = xl[b2]*3' and so on). Graphics can be transferred with
'xl[a1] = current.graphics()'. There is an Excel workbook with examples of
calling R from Excel in the 'doc' folder. It tries to keep things as
simple as possible - there are no needs in any additional
installations besides R, only 'VBA' code in the Excel workbook.
Microsoft Excel is required for this package.
Author: Gregory Demin <excel.link.feedback@gmail.com>. To comply CRAN policy
includes source code from 'RDCOMClient' (http://www.omegahat.org/RDCOMClient) by
Duncan Temple Lang <duncan@wald.ucdavis.edu>.
Maintainer: Gregory Demin <excel.link.feedback@gmail.com>
Diff between excel.link versions 0.9.1 dated 2015-07-14 and 0.9.3 dated 2015-12-06
DESCRIPTION | 23 +++++++++------- MD5 | 38 +++++++++++++------------- NAMESPACE | 2 - NEWS | 5 +++ R/current.graphics.R | 3 -- build/vignette.rds |binary inst/doc/R_connection_examples.xlsm |binary man/RDCOMClient.Rd | 10 ++----- man/current.graphics.Rd | 28 ++++++++++--------- man/excel.link.Rd | 36 ++++++++++++------------- man/xl.Rd | 47 ++++++++++++++++----------------- man/xl.bind.range.Rd | 46 ++++++++++++++++---------------- man/xl.connect.table.Rd | 48 +++++++++++++++++---------------- man/xl.current.region.Rd | 51 ++++++++++++++++++------------------ man/xl.get.excel.Rd | 9 +++--- man/xl.index2address.Rd | 8 +++-- man/xl.read.file.Rd | 8 +++-- man/xl.sheet.add.Rd | 21 +++++++------- man/xl.workbook.add.Rd | 16 +++++------ man/xl.write.Rd | 12 ++++---- 20 files changed, 214 insertions(+), 197 deletions(-)
Title: Companion Animal Population Management
Description: Quantitative analysis to support companion animal population
management.
Author: Oswaldo Santos Baquero [aut, cre],
Marcos Amaku [ctb],
Fernando Ferreira [ctb]
Maintainer: Oswaldo Santos Baquero <oswaldosant@gmail.com>
Diff between capm versions 0.8.0 dated 2015-05-01 and 0.9.0 dated 2015-12-06
DESCRIPTION | 11 +++--- MD5 | 60 +++++++++++++++++------------------ NAMESPACE | 17 ++++++++- NEWS | 39 +++++++++++++++++++++- R/PlotGlobalSens.R | 4 +- R/PlotLocalSens.R | 5 +- R/PlotModels.R | 1 R/PlotPopPyramid.R | 4 +- R/capm-package.R | 12 ++++--- inst/CITATION | 4 +- man/Calculate2StageSampleSize.Rd | 2 - man/CalculateGlobalSens.Rd | 13 ++++--- man/CalculateLocalSens.Rd | 11 +++--- man/CalculatePopChange.Rd | 9 ++--- man/CalculateSimpleSampleSize.Rd | 2 - man/CalculateStratifiedSampleSize.Rd | 6 +-- man/DesignSurvey.Rd | 5 +- man/GraphicInterface.Rd | 3 + man/MapkmlPSU.Rd | 8 ++-- man/PlotGlobalSens.Rd | 19 +++++------ man/PlotLocalSens.Rd | 16 +++++---- man/PlotModels.Rd | 33 +++++++++---------- man/PlotPopPyramid.Rd | 5 +- man/SamplePPS.Rd | 3 + man/SampleSystematic.Rd | 6 +-- man/SetRanges.Rd | 6 ++- man/SolveIASA.Rd | 21 ++++++------ man/SolveSI.Rd | 13 ++++--- man/SolveTC.Rd | 17 +++++---- man/SummarySurvey.Rd | 7 ++-- man/capm-package.Rd | 8 ++-- 31 files changed, 222 insertions(+), 148 deletions(-)
Title: Discrete and Global Optimization Routines
Description:
The R package 'adagio' will provide methods and algorithms for
discrete optimization and (evolutionary) global optimization.
Author: Hans Werner Borchers
Maintainer: Hans W. Borchers <hwborchers@googlemail.com>
Diff between adagio versions 0.6.1 dated 2015-07-27 and 0.6.3 dated 2015-12-06
DESCRIPTION | 14 +++++++------- MD5 | 10 +++++++--- NAMESPACE | 9 +++++---- NEWS | 10 +++++++++- R/hamiltonian.R |only R/lsqlincon.R |only man/hamiltonian.Rd |only man/lsqlincon.Rd |only 8 files changed, 28 insertions(+), 15 deletions(-)
Title: Access to Abbyy Optical Character Recognition (OCR) API
Description: Get text from images of text using Abbyy Cloud Optical Character
Recognition (OCR) API. Easily OCR images, barcodes, forms, documents with
machine readable zones, e.g. passports. Get the results in a variety of formats
including plain text and XML. To learn more about the Abbyy OCR API, see http://
ocrsdk.com/.
Author: Gaurav Sood [aut, cre]
Maintainer: Gaurav Sood <gsood07@gmail.com>
Diff between abbyyR versions 0.2.2 dated 2015-11-06 and 0.2.3 dated 2015-12-06
DESCRIPTION | 8 +- MD5 | 87 +++++++++++++++--------------- NAMESPACE | 2 NEWS | 9 +++ R/abbyyR.R | 7 +- R/compareText.R | 3 + R/deleteTask.R | 37 ++++++++---- R/getResults.R | 36 ++++++++---- R/getTaskStatus.R | 11 +-- R/listFinishedTasks.R | 16 +++-- R/listTasks.R | 37 ++++++++---- R/ocrFile.R | 13 +++- R/processBarcodeField.R | 6 +- R/processBusinessCard.R | 7 +- R/processCheckmarkField.R | 8 +- R/processDocument.R | 2 R/processFields.R | 9 +-- R/processImage.R | 15 ++--- R/processMRZ.R | 4 - R/processPhotoId.R | 15 ++--- R/processRemoteImage.R | 8 +- R/processTextField.R | 19 ++++-- R/submitImage.R | 23 ++++--- inst/doc/example.html | 4 - inst/doc/overview.html | 4 - inst/doc/wiscads.html | 4 - inst/extdata/t1.png |only man/deleteTask.Rd | 9 ++- man/getResults.Rd | 6 +- man/getTaskStatus.Rd | 2 man/listTasks.Rd | 13 ++-- man/ocrFile.Rd | 7 +- man/processBarcodeField.Rd | 2 man/processBusinessCard.Rd | 4 - man/processCheckmarkField.Rd | 4 - man/processDocument.Rd | 2 man/processFields.Rd | 6 +- man/processImage.Rd | 2 man/processMRZ.Rd | 2 man/processPhotoId.Rd | 2 man/processTextField.Rd | 2 man/submitImage.Rd | 4 - tests/testthat/test-get-info.R | 2 tests/testthat/test-get-results.R |only tests/testthat/test-list-finished-tasks.R |only tests/testthat/test-list-tasks.R |only tests/testthat/test-submit-image.R |only 47 files changed, 271 insertions(+), 192 deletions(-)
Title: Data Preparation, Estimation and Prediction in Multi-State
Models
Description: The mstate packages contains functions for data preparation, descriptives, hazard estimation and prediction with Aalen-Johansen or simulation in competing risks and multi-state models.
Author: Hein Putter, Liesbeth de Wreede, Marta Fiocco, with contributions by
Ronald Geskus
Maintainer: Hein Putter <H.Putter@lumc.nl>
Diff between mstate versions 0.2.7 dated 2014-05-30 and 0.2.8 dated 2015-12-06
mstate-0.2.7/mstate/R/crprep.r |only mstate-0.2.7/mstate/R/expandcovs.R |only mstate-0.2.7/mstate/man/expandcovs.Rd |only mstate-0.2.8/mstate/ChangeLog | 30 ++ mstate-0.2.8/mstate/DESCRIPTION | 17 - mstate-0.2.8/mstate/MD5 | 68 +++--- mstate-0.2.8/mstate/NAMESPACE | 25 +- mstate-0.2.8/mstate/R/ELOS.R | 2 mstate-0.2.8/mstate/R/create.wData.omega.R |only mstate-0.2.8/mstate/R/crprep.R |only mstate-0.2.8/mstate/R/cuminc.R | 210 ++++++------------- mstate-0.2.8/mstate/R/cutLMms.R | 2 mstate-0.2.8/mstate/R/events.R | 2 mstate-0.2.8/mstate/R/expand.covs.R |only mstate-0.2.8/mstate/R/msprep.R | 32 +-- mstate-0.2.8/mstate/R/mssample.R | 15 - mstate-0.2.8/mstate/R/plot.Cuminc.R |only mstate-0.2.8/mstate/R/plot.probtrans.R | 51 ++-- mstate-0.2.8/mstate/R/print.Cuminc.R |only mstate-0.2.8/mstate/R/probtrans.R | 20 + mstate-0.2.8/mstate/R/summary.Cuminc.R |only mstate-0.2.8/mstate/R/xsect.R | 5 mstate-0.2.8/mstate/build/vignette.rds |binary mstate-0.2.8/mstate/data/aidssi2.RData |only mstate-0.2.8/mstate/inst/CITATION | 2 mstate-0.2.8/mstate/inst/doc/Tutorial.R | 1 mstate-0.2.8/mstate/inst/doc/Tutorial.Rnw | 1 mstate-0.2.8/mstate/inst/doc/Tutorial.pdf |binary mstate-0.2.8/mstate/man/ELOS.Rd | 3 mstate-0.2.8/mstate/man/aidssi.Rd | 100 ++++++--- mstate-0.2.8/mstate/man/crprep.Rd | 277 ++++++++++++-------------- mstate-0.2.8/mstate/man/cuminc.Rd | 35 +-- mstate-0.2.8/mstate/man/cutLMms.Rd | 11 - mstate-0.2.8/mstate/man/ebmt1.Rd | 8 mstate-0.2.8/mstate/man/ebmt4.Rd | 15 + mstate-0.2.8/mstate/man/expand.covs.Rd |only mstate-0.2.8/mstate/man/expand.covs.msdata.Rd |only mstate-0.2.8/mstate/man/msfit.Rd | 10 mstate-0.2.8/mstate/man/mstate-package.Rd | 16 - mstate-0.2.8/mstate/man/probtrans.Rd | 10 mstate-0.2.8/mstate/vignettes/Tutorial.Rnw | 1 41 files changed, 504 insertions(+), 465 deletions(-)
Title: Chinese Text Segmentation
Description: Chinese text segmentation, keyword extraction and speech tagging
For R.
Author: Qin Wenfeng, and the authors of CppJieba for the included version of
CppJieba
Maintainer: Qin Wenfeng <mail@qinwenfeng.com>
Diff between jiebaR versions 0.6 dated 2015-10-01 and 0.7 dated 2015-12-06
jiebaR-0.6/jiebaR/tests/testthat/C_API/R/RcppExports.R |only jiebaR-0.7/jiebaR/DESCRIPTION | 13 jiebaR-0.7/jiebaR/MD5 | 89 +++-- jiebaR-0.7/jiebaR/NAMESPACE | 8 jiebaR-0.7/jiebaR/NEWS | 47 +- jiebaR-0.7/jiebaR/R/RcppExports.R | 24 + jiebaR-0.7/jiebaR/R/gen_idf.R |only jiebaR-0.7/jiebaR/R/get_tuple.R |only jiebaR-0.7/jiebaR/R/simhash.R | 48 +++ jiebaR-0.7/jiebaR/R/tobin.R |only jiebaR-0.7/jiebaR/R/zzz.R | 2 jiebaR-0.7/jiebaR/inst/include/jiebaRAPI.h | 42 +- jiebaR-0.7/jiebaR/inst/include/lib/Simhasher.hpp | 53 +++ jiebaR-0.7/jiebaR/inst/include/segtype.hpp | 63 +++ jiebaR-0.7/jiebaR/inst/other |only jiebaR-0.7/jiebaR/man/DICTPATH.Rd | 4 jiebaR-0.7/jiebaR/man/distance.Rd | 9 jiebaR-0.7/jiebaR/man/edit_dict.Rd | 10 jiebaR-0.7/jiebaR/man/filecoding.Rd | 2 jiebaR-0.7/jiebaR/man/filter_segment.Rd | 2 jiebaR-0.7/jiebaR/man/freq.Rd | 2 jiebaR-0.7/jiebaR/man/get_idf.Rd |only jiebaR-0.7/jiebaR/man/get_tuple.Rd |only jiebaR-0.7/jiebaR/man/jiebaR.Rd | 17 - jiebaR-0.7/jiebaR/man/keywords.Rd | 8 jiebaR-0.7/jiebaR/man/less-than-equals-.keywords.Rd | 2 jiebaR-0.7/jiebaR/man/less-than-equals-.qseg.Rd | 17 - jiebaR-0.7/jiebaR/man/less-than-equals-.segment.Rd | 2 jiebaR-0.7/jiebaR/man/less-than-equals-.simhash.Rd | 2 jiebaR-0.7/jiebaR/man/less-than-equals-.tagger.Rd | 2 jiebaR-0.7/jiebaR/man/print.hmmseg.Rd | 2 jiebaR-0.7/jiebaR/man/segment.Rd | 30 - jiebaR-0.7/jiebaR/man/set_qsegmodel.Rd | 4 jiebaR-0.7/jiebaR/man/show_dictpath.Rd | 4 jiebaR-0.7/jiebaR/man/simhash.Rd | 9 jiebaR-0.7/jiebaR/man/tagging.Rd | 12 jiebaR-0.7/jiebaR/man/tobin.Rd |only jiebaR-0.7/jiebaR/man/worker.Rd | 123 +++---- jiebaR-0.7/jiebaR/src/RcppExports.cpp | 74 ++++ jiebaR-0.7/jiebaR/src/get_idf.cpp |only jiebaR-0.7/jiebaR/src/get_tuple.cpp |only jiebaR-0.7/jiebaR/src/segtype.cpp | 18 + jiebaR-0.7/jiebaR/tests/testthat/CPP_API/DESCRIPTION | 2 jiebaR-0.7/jiebaR/tests/testthat/CPP_API/R/Rcpps.R | 48 +-- jiebaR-0.7/jiebaR/tests/testthat/CPP_API/src/test_api.cpp | 159 +++++++--- jiebaR-0.7/jiebaR/tests/testthat/CPP_API/tests/testthat/test-cpp.R | 57 +++ jiebaR-0.7/jiebaR/tests/testthat/C_API/DESCRIPTION | 6 jiebaR-0.7/jiebaR/tests/testthat/C_API/R/Rcpps.R |only jiebaR-0.7/jiebaR/tests/testthat/C_API/src/test_api.c | 159 +++++++--- jiebaR-0.7/jiebaR/tests/testthat/C_API/tests/testthat/test-c.R | 58 +++ jiebaR-0.7/jiebaR/tests/testthat/test-api.R | 14 51 files changed, 925 insertions(+), 322 deletions(-)
Title: Classical Jacobi Eigensolution Algorithm
Description: Implements the classical Jacobi (1846) algorithm for the
eigenvalues and eigenvectors of a real symmetric matrix, both in
pure R and in C++ using Rcpp. Mainly as a programming example
for teaching purposes.
Author: Bill Venables
Maintainer: Bill Venables <Bill.Venables@gmail.com>
Diff between JacobiEigen versions 0.2-1 dated 2015-11-29 and 0.2-2 dated 2015-12-06
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/JacobiR.R | 6 ++---- inst/doc/JacobiEigen.R | 2 +- inst/doc/JacobiEigen.Rmd | 25 +++++++++++++++---------- inst/doc/JacobiEigen.pdf |binary man/Jacobi.Rd | 3 +-- man/JacobiR.Rd | 4 ++-- vignettes/JacobiEigen.Rmd | 25 +++++++++++++++---------- vignettes/header.tex | 5 +---- 10 files changed, 50 insertions(+), 46 deletions(-)
Title: CRISPR AnalyzeR for Pooled CRISPR Screens
Description: CRISPR-Analyzer for pooled CRISPR screens (caRpools) provides an end-to-end analysis of CRISPR screens including quality control, hit candidate analysis, visualization and automated report generation using R markdown. Needs MAGeCK (http://sourceforge.net/p/mageck/wiki/Home/), bowtie2 for all functions. CRISPR (clustered regularly interspaced short palindromic repeats) is a method to perform genome editing. See <https://en.wikipedia.org/wiki/CRISPR> for more information on
CRISPR.
Author: Jan Winter, Florian Heigwer
Maintainer: Jan Winter <jan.winter@dkfz-heidelberg.de>
Diff between caRpools versions 0.82.5 dated 2015-11-04 and 0.83 dated 2015-12-06
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/get.gene.info.R | 6 +++--- inst/doc/CaRpools.R | 14 ++++++++------ inst/doc/CaRpools.Rmd | 23 +++++++++++++++-------- inst/doc/CaRpools.html | 24 +++++++++++++++--------- man/get.gene.info.Rd | 18 ++++++++++++------ vignettes/CaRpools.Rmd | 23 +++++++++++++++-------- 8 files changed, 79 insertions(+), 51 deletions(-)
Title: A Program for Missing Data
Description: A tool that "multiply imputes" missing data in a single cross-section
(such as a survey), from a time series (like variables collected for
each year in a country), or from a time-series-cross-sectional data
set (such as collected by years for each of several countries).
Amelia II implements our bootstrapping-based algorithm that gives
essentially the same answers as the standard IP or EMis approaches,
is usually considerably faster than existing approaches and can
handle many more variables. Unlike Amelia I and other statistically
rigorous imputation software, it virtually never crashes (but please
let us know if you find to the contrary!). The program also
generalizes existing approaches by allowing for trends in time series
across observations within a cross-sectional unit, as well as priors
that allow experts to incorporate beliefs they have about the values
of missing cells in their data. Amelia II also includes useful
diagnostics of the fit of multiple imputation models. The program
works from the R command line or via a graphical user interface that
does not require users to know R.
Author: James Honaker <jhonaker@iq.harvard.edu>,
Gary King <king@harvard.edu>,
Matthew Blackwell <mblackwell@gov.harvard.edu>
Maintainer: Matthew Blackwell <mblackwell@gov.harvard.edu>
Diff between Amelia versions 1.7.3 dated 2014-11-15 and 1.7.4 dated 2015-12-06
Amelia-1.7.3/Amelia/tests/collinear.R |only Amelia-1.7.4/Amelia/DESCRIPTION | 14 +++++------ Amelia-1.7.4/Amelia/MD5 | 38 +++++++++++++++---------------- Amelia-1.7.4/Amelia/NAMESPACE | 11 ++++++++ Amelia-1.7.4/Amelia/NEWS | 8 ++++++ Amelia-1.7.4/Amelia/R/amcheck.r | 20 ++++++++-------- Amelia-1.7.4/Amelia/R/ameliagui.r | 8 ++++-- Amelia-1.7.4/Amelia/R/diag.r | 26 +++++++++++++-------- Amelia-1.7.4/Amelia/R/mo.R | 15 +++++------- Amelia-1.7.4/Amelia/R/prep.r | 19 ++++++++------- Amelia-1.7.4/Amelia/README.md | 2 - Amelia-1.7.4/Amelia/inst/CITATION | 9 ++++--- Amelia-1.7.4/Amelia/inst/doc/amelia.R | 15 ++++++------ Amelia-1.7.4/Amelia/inst/doc/amelia.Rnw | 14 +++++------ Amelia-1.7.4/Amelia/inst/doc/amelia.pdf |binary Amelia-1.7.4/Amelia/man/mi.meld.Rd | 4 +-- Amelia-1.7.4/Amelia/man/moPrep.Rd | 2 - Amelia-1.7.4/Amelia/src/Makevars | 2 - Amelia-1.7.4/Amelia/src/Makevars.win | 2 - Amelia-1.7.4/Amelia/vignettes/amelia.Rnw | 14 +++++------ Amelia-1.7.4/Amelia/vignettes/auto |only 21 files changed, 129 insertions(+), 94 deletions(-)