Title: High Frequency Price Estimators by PortfolioEffect
Description: R interface to PortfolioEffect Quant service for estimating
high frequency price variance, quarticity, microstructure noise variance,
and other metrics in both aggregate and rolling window flavors.
Constructed estimators could use client-side market data or access
HF intraday price history for all major US Equities.
See https://www.portfolioeffect.com/ for more information on the
PortfolioEffect high frequency portfolio analytics platform.
Author: Andrey Kostin [aut, cre],
Aleksey Zemnitskiy [aut],
Oleg Nechaev [aut]
Maintainer: Andrey Kostin <andrey.kostin@portfolioeffect.com>
Diff between PortfolioEffectEstim versions 1.0 dated 2015-11-13 and 1.1 dated 2015-12-07
DESCRIPTION | 8 +-- MD5 | 13 +++-- NEWS | 7 +++ build/vignette.rds |binary inst/doc/PortfolioEffectEstim.Rnw | 81 +++++++++++++++++++++++++++++++------ inst/doc/PortfolioEffectEstim.pdf |binary vignettes/PortfolioEffectEstim.Rnw | 81 +++++++++++++++++++++++++++++++------ vignettes/img/Table.pdf |only 8 files changed, 156 insertions(+), 34 deletions(-)
More information about PortfolioEffectEstim at CRAN
Permanent link
Title: Bayesian Reconstruction of Disease Outbreaks by Combining
Epidemiologic and Genomic Data
Description: Bayesian reconstruction of disease outbreaks using epidemiological
and genetic information.
Author: Thibaut Jombart <thibautjombart@gmail.com>, Anne Cori, Joel Hellewell
Maintainer: Thibaut Jombart <thibautjombart@gmail.com>
Diff between outbreaker versions 1.1-6 dated 2015-09-11 and 1.1-7 dated 2015-12-07
outbreaker-1.1-6/outbreaker/man/Rstat.Rd |only outbreaker-1.1-6/outbreaker/man/fakeOutbreak.Rd |only outbreaker-1.1-6/outbreaker/man/getMu.Rd |only outbreaker-1.1-6/outbreaker/man/mainplots.Rd |only outbreaker-1.1-7/outbreaker/ChangeLog | 14 outbreaker-1.1-7/outbreaker/DESCRIPTION | 15 outbreaker-1.1-7/outbreaker/MD5 | 57 - outbreaker-1.1-7/outbreaker/NAMESPACE | 87 + outbreaker-1.1-7/outbreaker/R/data.R |only outbreaker-1.1-7/outbreaker/R/interface.R | 343 ++++++- outbreaker-1.1-7/outbreaker/R/mutationRates.R | 45 outbreaker-1.1-7/outbreaker/R/package.R |only outbreaker-1.1-7/outbreaker/R/plot.R | 130 ++ outbreaker-1.1-7/outbreaker/R/reproRate.R | 67 + outbreaker-1.1-7/outbreaker/R/selectChains.R | 41 outbreaker-1.1-7/outbreaker/R/simOutbreak.R | 150 ++- outbreaker-1.1-7/outbreaker/R/tTree.R | 139 ++ outbreaker-1.1-7/outbreaker/README.md | 29 outbreaker-1.1-7/outbreaker/configure | 10 outbreaker-1.1-7/outbreaker/configure.ac | 4 outbreaker-1.1-7/outbreaker/man/get.mu.Rd |only outbreaker-1.1-7/outbreaker/man/outbreaker.Rd | 483 ++++------ outbreaker-1.1-7/outbreaker/man/outbreaker.package.Rd |only outbreaker-1.1-7/outbreaker/man/plot.Rd |only outbreaker-1.1-7/outbreaker/man/repro.Rd |only outbreaker-1.1-7/outbreaker/man/selectChains.Rd | 82 - outbreaker-1.1-7/outbreaker/man/simOutbreak.Rd | 200 +--- outbreaker-1.1-7/outbreaker/man/simulated-outbreak-dataset.Rd |only outbreaker-1.1-7/outbreaker/man/tTree.Rd | 147 +-- outbreaker-1.1-7/outbreaker/src/distances.c | 7 outbreaker-1.1-7/outbreaker/src/genclasses.c | 26 outbreaker-1.1-7/outbreaker/src/genclasses.h | 2 outbreaker-1.1-7/outbreaker/src/outbreaker.c | 4 outbreaker-1.1-7/outbreaker/src/structures.c | 21 outbreaker-1.1-7/outbreaker/src/structures.h | 2 35 files changed, 1431 insertions(+), 674 deletions(-)
Title: Conditional Logistic Regression: A Two-Step Estimation Method
Description: Conditional logistic regression with longitudinal follow up and
individual-level random coefficients: A stable and efficient
two-step estimation method.
Author: Radu V. Craiu, Thierry Duchesne, Daniel Fortin and Sophie Baillargeon
Maintainer: Thierry Duchesne <thierry.duchesne@mat.ulaval.ca>
Diff between TwoStepCLogit versions 1.2.3 dated 2014-10-24 and 1.2.4 dated 2015-12-07
DESCRIPTION | 16 ++++++------ MD5 | 23 +++++++++-------- NAMESPACE | 9 ++++++ R/Ts.estim.R | 52 ++++++++++++++++++++------------------- R/TwoStepCLogit.R | 8 +++--- R/ddim.R | 13 +++++---- R/internal.R | 8 +++--- inst/NEWS.Rd | 6 ++++ inst/tests |only man/Ts.estim.Rd | 56 ++++++++++++++++++++++--------------------- man/TwoStepCLogit-package.Rd | 17 ++++++------- man/bison.Rd | 31 +++++++++++------------ man/ddim.Rd | 18 ++++++------- 13 files changed, 139 insertions(+), 118 deletions(-)
Title: Calculate Pairwise Multiple Comparisons of Mean Rank Sums
Description: The Kruskal and Wallis one-way analysis of variance by ranks
or van der Waerden's normal score test can be employed,
if the data do not meet the assumptions
for one-way ANOVA. Provided that significant differences
were detected by the omnibus test, one may be interested
in applying post-hoc tests for pairwise multiple comparisons
(such as Nemenyi's test, Dunn's test, Conover's test,
van der Waerden's test). Similarly, one-way ANOVA with repeated
measures that is also referred to as ANOVA with unreplicated
block design can also be conducted via the Friedman-Test
or the Quade-test. The consequent post-hoc pairwise
multiple comparison tests according to Nemenyi, Conover and Quade
are also provided in this package. Finally Durbin's test for
a two-way balanced incomplete block design (BIBD) is also given
in this package.
Author: Thorsten Pohlert
Maintainer: Thorsten Pohlert <thorsten.pohlert@gmx.de>
Diff between PMCMR versions 3.0 dated 2015-11-24 and 4.0 dated 2015-12-07
DESCRIPTION | 25 +- MD5 | 60 +++--- NAMESPACE | 22 +- R/dunn.test.control.R | 2 R/durbin.test.R |only R/jonckheere.test.R |only R/posthoc.durbin.test.R |only R/posthoc.friedman.conover.R | 38 ---- R/posthoc.friedman.nemenyi.test.R | 2 R/posthoc.kruskal.conover.R | 2 R/posthoc.kruskal.dunn.test.R | 2 R/posthoc.kruskal.nemenyi.test.R | 2 R/posthoc.quade.test.R |only R/posthoc.vanWaerden.test.R | 2 R/print.PMCMR.R |only inst/NEWS.Rd | 50 +++++ inst/doc/PMCMR.R | 155 ++++++++++++++-- inst/doc/PMCMR.Rnw | 321 ++++++++++++++++++++++++++++++++--- inst/doc/PMCMR.pdf |binary man/PMCMR-package.Rd | 55 ++++- man/dunn.test.control.Rd | 6 man/durbin.test.Rd |only man/get.pvalues.Rd |only man/jonckheere.test.Rd |only man/posthoc.durbin.test.Rd |only man/posthoc.friedman.conover.test.Rd | 37 ++-- man/posthoc.friedman.nemenyi.test.Rd | 7 man/posthoc.kruskal.conover.Rd | 5 man/posthoc.kruskal.dunn.test.Rd | 18 - man/posthoc.kruskal.nemenyi.test.Rd | 7 man/posthoc.quade.test.Rd |only man/posthoc.vanWaerden.test.Rd | 5 man/print.PMCMR.Rd |only man/summary.PMCMR.Rd |only man/vanWaerden.test.Rd | 5 vignettes/PMCMR.Rnw | 321 ++++++++++++++++++++++++++++++++--- vignettes/PMCMR.bib | 32 +++ 37 files changed, 968 insertions(+), 213 deletions(-)
Title: Calculate the NLTT Statistic
Description: Provides functions to calculate the normalised Lineage-Through-Time (nLTT) statistic, given two phylogenetic trees. The nLTT statistic measures the difference between two Lineage-Through-Time curves, where each curve is normalised both in time and in number of lineages.
Author: Thijs Janzen
Maintainer: Thijs Janzen <thijsjanzen@gmail.com>
Diff between nLTT versions 1.1 dated 2015-04-21 and 1.1.1 dated 2015-12-07
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NAMESPACE | 7 +++++-- R/ABC_SMC.R | 27 --------------------------- man/nLTT-internal.Rd | 1 - man/nLTT-package.Rd | 2 ++ 6 files changed, 17 insertions(+), 40 deletions(-)
Title: Comprehensive Luminescence Dating Data Analysis
Description: A collection of various R functions for the purpose of Luminescence
dating data analysis. This includes, amongst others, data import, export,
application of age models, curve deconvolution, sequence analysis and
plotting of equivalent dose distributions.
Author: Sebastian Kreutzer [aut, trl, cre],
Michael Dietze [aut],
Christoph Burow [aut],
Margret C. Fuchs [aut],
Christoph Schmidt [aut],
Manfred Fischer [aut, trl],
Rachel K. Smedley [aut],
Markus Fuchs [ths]
Maintainer: Sebastian Kreutzer <sebastian.kreutzer@u-bordeaux-montaigne.fr>
Diff between Luminescence versions 0.5.0 dated 2015-12-03 and 0.5.1 dated 2015-12-07
DESCRIPTION | 12 +- MD5 | 78 +++++++++--------- NEWS | 22 +++++ R/Luminescence-package.R | 8 - R/extract_IrradiationTimes.R | 4 R/get_RLum.R | 12 +- R/plot_RLum.Analysis.R | 130 +++++++++++++++---------------- R/read_BIN2R.R | 4 R/read_SPE2R.R | 4 R/set_RLum.R | 12 +- R/write_R2BIN.R | 4 inst/CITATION | 6 - inst/NEWS.Rd | 34 ++++++-- man/Luminescence-package.Rd | 8 - man/Risoe.BINfileData2RLum.Analysis.Rd | 2 man/Risoe.BINfileData2RLum.Data.Curve.Rd | 2 man/analyse_IRSAR.RF.Rd | 2 man/analyse_SAR.CWOSL.Rd | 2 man/calc_FadingCorr.Rd | 2 man/calc_Statistics.Rd | 2 man/calc_gSGC.Rd | 2 man/extract_IrradiationTimes.Rd | 2 man/fit_LMCurve.Rd | 2 man/get_RLum.Rd | 2 man/merge_RLum.Analysis.Rd | 2 man/merge_RLum.Data.Curve.Rd | 2 man/plot_AbanicoPlot.Rd | 2 man/plot_GrowthCurve.Rd | 2 man/plot_RLum.Analysis.Rd | 2 man/plot_RLum.Data.Curve.Rd | 2 man/plot_RLum.Rd | 2 man/plot_RLum.Results.Rd | 2 man/plot_ViolinPlot.Rd | 2 man/read_BIN2R.Rd | 2 man/read_Daybreak2R.Rd | 2 man/read_SPE2R.Rd | 2 man/read_XSYG2R.Rd | 2 man/set_RLum.Rd | 2 man/use_DRAC.Rd | 2 man/write_R2BIN.Rd | 2 40 files changed, 218 insertions(+), 172 deletions(-)
Title: Functions for Generalized Dissimilarity Modeling
Description: A toolkit with functions to fit, plot, and summarize Generalized Dissimilarity Models.
Author: Glenn Manion, Matthew Lisk, Simon Ferrier, Diego Nieto-Lugilde, Matthew C. Fitzpatrick
Maintainer: Matthew C. Fitzpatrick <mfitzpatrick@al.umces.edu>
Diff between gdm versions 1.1.4 dated 2015-10-14 and 1.1.5 dated 2015-12-07
DESCRIPTION | 12 MD5 | 8 R/GDM_Table_Funcs.R | 858 ++++++++++++++++---------------------------------- man/formatsitepair.Rd | 15 man/predict.gdm.Rd | 2 5 files changed, 295 insertions(+), 600 deletions(-)
Title: Grain-Size Statistics and Description of Sediment
Description: Full descriptive statistics, physical description of sediment,
metric or phi sieves.
Author: Regis K. Gallon (MNHN), Jerome Fournier (CNRS|MNHN)
Maintainer: Regis K. Gallon <reg.gallon@gmail.com>
Diff between G2Sd versions 2.1.4 dated 2015-08-11 and 2.1.5 dated 2015-12-07
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/G2Sd-internal.R | 49 +++++++++++++++++++++++++------------------------ 3 files changed, 31 insertions(+), 30 deletions(-)
Title: Download Logs from the 'RStudio' 'CRAN' Mirror
Description: 'API' to the database of 'CRAN' package downloads from the
'RStudio' 'CRAN mirror'. The database itself is at <http://cranlogs.r-pkg.org>,
see <https://github.com/metacran/cranlogs.app> for the raw 'API'.
Author: Gabor Csardi [aut, cre]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between cranlogs versions 2.0.0 dated 2015-05-07 and 2.1.0 dated 2015-12-07
DESCRIPTION | 15 ++++++----- MD5 | 14 ++++++---- NAMESPACE | 3 +- R/cranlogs.R | 59 +++++++++++++++++++++++++++++++++------------- inst |only man/cran_downloads.Rd | 16 ++++++++++-- man/cran_top_downloads.Rd | 4 ++- man/cranlogs.Rd | 2 - 8 files changed, 78 insertions(+), 35 deletions(-)
Title: The Chopthin Resampler
Description: Resampling is a standard step in particle filtering and in
sequential Monte Carlo. This package implements the chopthin resampler, which
keeps a bound on the ratio between the largest and the smallest weights after
resampling.
Author: Axel Gandy and F. Din-Houn Lau
Maintainer: Axel Gandy <a.gandy@imperial.ac.uk>
Diff between chopthin versions 0.1 dated 2015-03-26 and 0.2 dated 2015-12-07
DESCRIPTION | 14 +- MD5 | 21 ++- NAMESPACE | 2 R/RcppExports.R | 16 +- inst/NEWS.Rd |only man/chopthin.Rd | 14 +- src/RcppExports.cpp | 8 - src/chopthin.cpp | 19 ++- src/chopthin_internal.h | 163 +++++++++++++++++++++++------ tests/testthat.R | 1 tests/testthat/test-chopthin_exact.R | 71 +++++++++++- tests/testthat/test-chopthin_rcauchy.R |only tests/testthat/test-oneverysmallparticle.R |only 13 files changed, 257 insertions(+), 72 deletions(-)
Title: Cross-Platform Perl Based R Function to Create Excel 2003 (XLS)
and Excel 2007 (XLSX) Files
Description: Cross-platform Perl based R function to create Excel 2003 (XLS) and Excel 2007 (XLSX)
files from one or more data frames. Each data frame will be
written to a separate named worksheet in the Excel spreadsheet.
The worksheet name will be the name of the data frame it contains
or can be specified by the user.
Author: Marc Schwartz <marc_schwartz@me.com> and various authors for Perl modules listed in each .pm file.
Maintainer: Marc Schwartz <marc_schwartz@me.com>
Diff between WriteXLS versions 3.6.1 dated 2015-07-02 and 4.0.0 dated 2015-12-07
DESCRIPTION | 11 +- MD5 | 8 - R/WriteXLS.R | 228 ++++++++++++++++++++++++++++---------------------------- R/testPerl.R | 45 +++++------ man/WriteXLS.Rd | 60 +++++++++----- 5 files changed, 184 insertions(+), 168 deletions(-)
Title: Semiparametric Bivariate Regression Models
Description: Routines for fitting bivariate models for binary and continuous responses with linear and nonlinear effects in the presence of associated error equations, endogeneity, non-random sample selection or partial observability.
Author: Giampiero Marra <giampiero.marra@ucl.ac.uk> and Rosalba Radice <r.radice@bbk.ac.uk>
Maintainer: Giampiero Marra <giampiero.marra@ucl.ac.uk>
Diff between SemiParBIVProbit versions 3.6 dated 2015-08-24 and 3.6-1 dated 2015-12-07
ChangeLog | 4 DESCRIPTION | 8 MD5 | 50 +- NAMESPACE | 9 R/AT.r | 885 ++++--------------------------------- R/AT2.r |only R/OR.r | 459 ++----------------- R/RR.r | 366 ++------------- R/SemiParBIVProbit.fit.post.r | 15 R/SemiParBIVProbit.r | 32 - R/bprobgHsCont3.r | 10 R/bprobgHsContUniv3.r | 7 R/distrHs.r | 28 - R/distrHsAT.r | 23 R/print.AT2.r |only R/print.SemiParBIVProbit.r | 10 R/print.summary.SemiParBIVProbit.r | 8 R/resp.check.R | 25 - R/summary.SemiParBIVProbit.r | 61 +- man/AT.Rd | 13 man/AT2.Rd |only man/OR.Rd | 18 man/RR.Rd | 16 man/SemiParBIVProbit.Rd | 31 - man/copgHs2.Rd | 2 man/prev.Rd | 10 man/print.AT2.Rd |only man/summary.SemiParBIVProbit.Rd | 10 28 files changed, 459 insertions(+), 1641 deletions(-)
More information about SemiParBIVProbit at CRAN
Permanent link
Title: Kernel Density Estimation for Heaped and Rounded Data
Description: In self-reported or anonymized data the user often encounters
heaped data, i.e. data which are rounded (to a possibly different degree
of coarseness). While this is mostly a minor problem in parametric density
estimation the bias can be very large for non-parametric methods such as kernel
density estimation. This package implements a partly Bayesian algorithm treating
the true unknown values as additional parameters and estimates the rounding
parameters to give a corrected kernel density estimate. It supports various
standard bandwidth selection methods. Varying rounding probabilities (depending
on the true value) and asymmetric rounding is estimable as well. Additionally,
bivariate non-parametric density estimation for rounded data is supported.
Author: Marcus Gross
Maintainer: Marcus Gross <marcus.gross@fu-berlin.de>
Diff between Kernelheaping versions 1.0 dated 2015-07-31 and 1.2 dated 2015-12-07
DESCRIPTION | 25 ++- MD5 | 30 +-- NAMESPACE | 4 R/Kernelheaping.R | 2 R/functions.R | 310 ++++++++++++++++++++++++++-------------- man/Kernelheaping.Rd | 12 - man/createSim.Kernelheaping.Rd | 2 man/dbivr.Rd | 2 man/dheaping.Rd | 14 + man/plot.Kernelheaping.Rd | 2 man/plot.bivrounding.Rd | 2 man/sim.Kernelheaping.Rd | 4 man/simSummary.Kernelheaping.Rd | 2 man/students.Rd | 4 man/summary.Kernelheaping.Rd | 2 man/tracePlots.Rd | 2 16 files changed, 265 insertions(+), 154 deletions(-)
Title: Spatially Explicit Capture-Recapture
Description: Functions to estimate the density and size of a spatially distributed animal population sampled with an array of passive detectors, such as traps, or by searching polygons or transects. Models incorporating distance-dependent detection are fitted by maximizing the likelihood. Tools are included for data manipulation and model selection.
Author: Murray Efford
Maintainer: Murray Efford <murray.efford@otago.ac.nz>
Diff between secr versions 2.9.5 dated 2015-06-15 and 2.10.0 dated 2015-12-07
secr-2.10.0/secr/DESCRIPTION | 11 secr-2.10.0/secr/MD5 | 207 +++--- secr-2.10.0/secr/NAMESPACE | 36 - secr-2.10.0/secr/NEWS | 65 + secr-2.10.0/secr/R/DENSITY.R | 44 + secr-2.10.0/secr/R/Dsurface.R | 9 secr-2.10.0/secr/R/LLsurface.secr.R | 5 secr-2.10.0/secr/R/addSightings.R |only secr-2.10.0/secr/R/autoini.R | 34 - secr-2.10.0/secr/R/closure.R | 7 secr-2.10.0/secr/R/confint.secr.R | 11 secr-2.10.0/secr/R/derivedMS.R | 9 secr-2.10.0/secr/R/discretize.R |only secr-2.10.0/secr/R/esa.R | 25 secr-2.10.0/secr/R/fxi.R | 88 +- secr-2.10.0/secr/R/homerange.R | 53 + secr-2.10.0/secr/R/ip.secr.R | 71 +- secr-2.10.0/secr/R/join.R | 147 +++- secr-2.10.0/secr/R/make.capthist.R | 115 +-- secr-2.10.0/secr/R/make.grid.R | 2 secr-2.10.0/secr/R/make.mask.R | 5 secr-2.10.0/secr/R/make.tri.R | 2 secr-2.10.0/secr/R/mask.check.R | 13 secr-2.10.0/secr/R/methods.R | 406 ++++++++++-- secr-2.10.0/secr/R/model.average.R | 53 - secr-2.10.0/secr/R/par.secr.fit.R | 13 secr-2.10.0/secr/R/plot.capthist.r | 85 +- secr-2.10.0/secr/R/pmixProfileLL.R |only secr-2.10.0/secr/R/predict.secr.R | 31 secr-2.10.0/secr/R/rbind.capthist.R | 35 - secr-2.10.0/secr/R/read.traps.R | 17 secr-2.10.0/secr/R/reduce.R | 1 secr-2.10.0/secr/R/regionN.R | 19 secr-2.10.0/secr/R/score.test.R | 4 secr-2.10.0/secr/R/secr.design.MS.R | 30 secr-2.10.0/secr/R/secr.fit.R | 275 ++++---- secr-2.10.0/secr/R/secr.make.newdata.R | 4 secr-2.10.0/secr/R/secrloglik.R | 298 +++++---- secr-2.10.0/secr/R/sighting.chat.R |only secr-2.10.0/secr/R/sim.capthist.R | 341 +++++++--- secr-2.10.0/secr/R/sim.popn.R | 25 secr-2.10.0/secr/R/sim.secr.R | 12 secr-2.10.0/secr/R/split.capthist.R | 8 secr-2.10.0/secr/R/split.traps.R | 10 secr-2.10.0/secr/R/suggest.buffer.R | 2 secr-2.10.0/secr/R/telemetry.R | 9 secr-2.10.0/secr/R/utility.R | 196 +++++ secr-2.10.0/secr/R/verify.R | 172 +++-- secr-2.10.0/secr/build/vignette.rds |binary secr-2.10.0/secr/data/deermouse.RData |binary secr-2.10.0/secr/data/housemouse.RData |binary secr-2.10.0/secr/data/ovenbird.RData |binary secr-2.10.0/secr/data/ovensong.RData |binary secr-2.10.0/secr/data/possum.RData |binary secr-2.10.0/secr/data/secrdemo.RData |binary secr-2.10.0/secr/data/stoatDNA.RData |binary secr-2.10.0/secr/inst/doc/secr-datainput.Rmd | 7 secr-2.10.0/secr/inst/doc/secr-datainput.pdf |binary secr-2.10.0/secr/inst/doc/secr-manual.pdf |binary secr-2.10.0/secr/inst/doc/secr-overview.R | 21 secr-2.10.0/secr/inst/doc/secr-overview.Rmd | 51 + secr-2.10.0/secr/inst/doc/secr-overview.pdf |binary secr-2.10.0/secr/man/DENSITY.Rd | 12 secr-2.10.0/secr/man/Parallel.Rd | 136 ++-- secr-2.10.0/secr/man/addSightings.Rd |only secr-2.10.0/secr/man/autoini.Rd | 6 secr-2.10.0/secr/man/capthist.Rd | 9 secr-2.10.0/secr/man/details.Rd | 31 secr-2.10.0/secr/man/discretize.Rd |only secr-2.10.0/secr/man/fx.total.Rd | 7 secr-2.10.0/secr/man/ip.secr.Rd | 11 secr-2.10.0/secr/man/join.Rd | 2 secr-2.10.0/secr/man/model.average.Rd | 9 secr-2.10.0/secr/man/plot.capthist.Rd | 6 secr-2.10.0/secr/man/plot.mask.Rd | 6 secr-2.10.0/secr/man/pmixProfileLL.Rd |only secr-2.10.0/secr/man/predict.secr.Rd | 12 secr-2.10.0/secr/man/rbind.traps.Rd | 2 secr-2.10.0/secr/man/read.traps.Rd | 4 secr-2.10.0/secr/man/reduce.capthist.Rd | 7 secr-2.10.0/secr/man/score.test.Rd | 2 secr-2.10.0/secr/man/secr-package.Rd | 5 secr-2.10.0/secr/man/secr.fit.Rd | 26 secr-2.10.0/secr/man/sighting.Rd |only secr-2.10.0/secr/man/sim.capthist.Rd | 57 + secr-2.10.0/secr/man/smooths.Rd | 2 secr-2.10.0/secr/man/sort.Rd | 11 secr-2.10.0/secr/man/speed.Rd | 6 secr-2.10.0/secr/man/traps.Rd | 5 secr-2.10.0/secr/man/usage.Rd | 20 secr-2.10.0/secr/man/vcov.secr.Rd | 2 secr-2.10.0/secr/src/secr.c | 817 ++++++++++++++++--------- secr-2.10.0/secr/src/secr.h | 197 +++--- secr-2.10.0/secr/src/sighting.c |only secr-2.10.0/secr/src/trapping.c | 22 secr-2.10.0/secr/src/utils.c | 10 secr-2.10.0/secr/vignettes/capt.txt |only secr-2.10.0/secr/vignettes/secr-datainput.Rmd | 7 secr-2.10.0/secr/vignettes/secr-datainput.html |only secr-2.10.0/secr/vignettes/secr-overview.Rmd | 51 + secr-2.10.0/secr/vignettes/secr-overview.html |only secr-2.10.0/secr/vignettes/secr-overview_cache |only secr-2.10.0/secr/vignettes/secr-overview_files |only secr-2.10.0/secr/vignettes/trap.txt |only secr-2.9.5/secr/R/joinold.R |only 105 files changed, 3079 insertions(+), 1505 deletions(-)
Title: 'rgl' in 'htmlwidgets' Framework
Description: Provides an 'htmlwidgets' framework for the 'rgl' package.
Author: Duncan Murdoch
Maintainer: Duncan Murdoch <murdoch.duncan@gmail.com>
Diff between rglwidget versions 0.1.1402 dated 2015-11-09 and 0.1.1431 dated 2015-12-07
rglwidget-0.1.1402/rglwidget/inst/htmlwidgets/rglcontroller.js |only rglwidget-0.1.1402/rglwidget/inst/htmlwidgets/rglcontroller.yaml |only rglwidget-0.1.1402/rglwidget/inst/htmlwidgets/rglwidget.js |only rglwidget-0.1.1402/rglwidget/inst/htmlwidgets/rglwidget.yaml |only rglwidget-0.1.1402/rglwidget/man/rglcontroller.Rd |only rglwidget-0.1.1431/rglwidget/DESCRIPTION | 10 rglwidget-0.1.1431/rglwidget/MD5 | 52 - rglwidget-0.1.1431/rglwidget/NAMESPACE | 7 rglwidget-0.1.1431/rglwidget/R/Sweave_knitr.R | 3 rglwidget-0.1.1431/rglwidget/R/convertScene.R | 3 rglwidget-0.1.1431/rglwidget/R/playwidget.R |only rglwidget-0.1.1431/rglwidget/R/rglcontroller.R | 130 +--- rglwidget-0.1.1431/rglwidget/R/rglwidget.R | 6 rglwidget-0.1.1431/rglwidget/R/webGLcontrols.R | 39 - rglwidget-0.1.1431/rglwidget/inst/htmlwidgets/lib/rglClass/rgl.css |only rglwidget-0.1.1431/rglwidget/inst/htmlwidgets/lib/rglClass/rglClass.src.js | 293 +++++++--- rglwidget-0.1.1431/rglwidget/inst/htmlwidgets/rglPlayer.js |only rglwidget-0.1.1431/rglwidget/inst/htmlwidgets/rglPlayer.yaml |only rglwidget-0.1.1431/rglwidget/inst/htmlwidgets/rglWebGL.js |only rglwidget-0.1.1431/rglwidget/inst/htmlwidgets/rglWebGL.yaml |only rglwidget-0.1.1431/rglwidget/inst/shinyDemo/server.R | 17 rglwidget-0.1.1431/rglwidget/inst/shinyDemo/ui.R | 4 rglwidget-0.1.1431/rglwidget/inst/todo.txt | 39 + rglwidget-0.1.1431/rglwidget/man/ageControl.Rd | 31 - rglwidget-0.1.1431/rglwidget/man/clipplaneControl.Rd |only rglwidget-0.1.1431/rglwidget/man/playwidget.Rd | 62 +- rglwidget-0.1.1431/rglwidget/man/rglwidget.Rd | 15 rglwidget-0.1.1431/rglwidget/man/sceneChange.Rd | 2 rglwidget-0.1.1431/rglwidget/man/shiny.Rd | 14 rglwidget-0.1.1431/rglwidget/man/vertexControl.Rd | 35 - rglwidget-0.1.1431/rglwidget/man/webGLcontrols.Rd | 27 rglwidget-0.1.1431/rglwidget/vignettes/internals.Rmd | 54 + rglwidget-0.1.1431/rglwidget/vignettes/test.Rmd | 124 ---- 33 files changed, 547 insertions(+), 420 deletions(-)
Title: 3D Visualization Using OpenGL
Description: Provides medium to high level functions for 3D interactive graphics, including
functions modelled on base graphics (plot3d(), etc.) as well as functions for
constructing representations of geometric objects (cube3d(), etc.). Output
may be on screen using OpenGL, or to various standard 3D file formats including
WebGL, PLY, OBJ, STL as well as 2D image formats, including PNG, Postscript, SVG, PGF.
Author: Daniel Adler <dadler@uni-goettingen.de>, Duncan Murdoch <murdoch@stats.uwo.ca>, and others (see README)
Maintainer: Duncan Murdoch <murdoch@stats.uwo.ca>
Diff between rgl versions 0.95.1367 dated 2015-10-06 and 0.95.1429 dated 2015-12-07
rgl-0.95.1367/rgl/inst/WebGL/CanvasMatrix.src.js |only rgl-0.95.1367/rgl/src/osx |only rgl-0.95.1429/rgl/DESCRIPTION | 12 rgl-0.95.1429/rgl/MD5 | 74 rgl-0.95.1429/rgl/R/Sweave_knitr.R | 104 rgl-0.95.1429/rgl/R/getscene.R | 11 rgl-0.95.1429/rgl/R/webGL.R | 2159 --- rgl-0.95.1429/rgl/R/webGLcontrols.R | 471 rgl-0.95.1429/rgl/R/zzz.R | 12 rgl-0.95.1429/rgl/README | 6 rgl-0.95.1429/rgl/build/vignette.rds |binary rgl-0.95.1429/rgl/configure | 37 rgl-0.95.1429/rgl/configure.ac | 25 rgl-0.95.1429/rgl/configure.win | 1 rgl-0.95.1429/rgl/inst/NEWS | 14 rgl-0.95.1429/rgl/inst/doc/WebGL.Rmd | 145 rgl-0.95.1429/rgl/inst/doc/WebGL.html |11332 +++-------------- rgl-0.95.1429/rgl/inst/doc/rgl.Rmd | 36 rgl-0.95.1429/rgl/inst/doc/rgl.html |14866 ++++------------------- rgl-0.95.1429/rgl/man/attributes.Rd | 2 rgl-0.95.1429/rgl/man/propertySetter.Rd | 6 rgl-0.95.1429/rgl/man/rgl.open.Rd | 3 rgl-0.95.1429/rgl/man/texts.Rd | 3 rgl-0.95.1429/rgl/man/writeWebGL.Rd | 16 rgl-0.95.1429/rgl/src/Makevars.in | 22 rgl-0.95.1429/rgl/src/PlaneSet.cpp | 29 rgl-0.95.1429/rgl/src/PlaneSet.h | 1 rgl-0.95.1429/rgl/src/api.cpp | 8 rgl-0.95.1429/rgl/src/config.h | 6 rgl-0.95.1429/rgl/src/init.cpp | 7 rgl-0.95.1429/rgl/src/rglview.cpp | 7 rgl-0.95.1429/rgl/src/scene.cpp | 9 rgl-0.95.1429/rgl/src/scene.h | 8 rgl-0.95.1429/rgl/src/subscene.cpp | 31 rgl-0.95.1429/rgl/src/subscene.h | 1 rgl-0.95.1429/rgl/vignettes/WebGL.Rmd | 145 rgl-0.95.1429/rgl/vignettes/rgl.Rmd | 36 rgl-0.95.1429/rgl/vignettes/setup.R | 54 38 files changed, 6023 insertions(+), 23676 deletions(-)
Title: R Interface to Bloomberg
Description: An R Interface to Bloomberg is provided via the Blp API.
Author: Whit Armstrong, Dirk Eddelbuettel and John Laing
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between Rblpapi versions 0.3.1 dated 2015-10-20 and 0.3.2 dated 2015-12-07
ChangeLog | 68 ++++++++++++++++++++++++ DESCRIPTION | 9 +-- MD5 | 57 ++++++++++---------- NAMESPACE | 3 - R/RcppExports.R | 8 ++ R/bdh.R | 2 R/beqs.R | 132 +++++++++++++++++++++++------------------------ R/getBars.R | 21 +++++-- R/getTicks.R | 25 +++----- R/subscribe.R |only configure | 24 ++++++-- inst/NEWS.Rd | 26 ++++++++- man/bdh.Rd | 6 +- man/bdp.Rd | 2 man/bds.Rd | 2 man/beqs.Rd | 17 +++--- man/blpAuthenticate.Rd | 2 man/blpConnect.Rd | 2 man/blpDisconnect.Rd | 4 - man/defaultConnection.Rd | 4 - man/fieldSearch.Rd | 3 - man/getBars.Rd | 21 ++++--- man/getMultipleTicks.Rd | 2 man/getTicks.Rd | 7 ++ man/subscribe.Rd |only src/RcppExports.cpp | 24 +++++++- src/beqs.cpp | 53 ++++++++++++------ src/blpapi_utils.cpp | 10 +++ src/blpapi_utils.h | 2 src/getBars.cpp | 24 +++++--- src/subscribe.cpp |only 31 files changed, 373 insertions(+), 187 deletions(-)
Title: Random Forests for Survival, Regression and Classification
(RF-SRC)
Description: A unified treatment of Breiman's random forests for survival, regression and classification problems based on Ishwaran and Kogalur's random survival forests (RSF) package. The package runs in both serial and parallel (OpenMP) modes. Now extended to include multivariate and unsupervised forests.
Author: Hemant Ishwaran <hemant.ishwaran@gmail.com>, Udaya B. Kogalur <ubk@kogalur.com>
Maintainer: Udaya B. Kogalur <ubk@kogalur.com>
Diff between randomForestSRC versions 1.6.1 dated 2015-03-04 and 2.0.0 dated 2015-12-07
randomForestSRC-1.6.1/randomForestSRC/inst/doc/index.html |only randomForestSRC-1.6.1/randomForestSRC/src/bootstrap.c |only randomForestSRC-1.6.1/randomForestSRC/src/bootstrap.h |only randomForestSRC-1.6.1/randomForestSRC/src/classification.c |only randomForestSRC-1.6.1/randomForestSRC/src/classification.h |only randomForestSRC-1.6.1/randomForestSRC/src/dataParser.c |only randomForestSRC-1.6.1/randomForestSRC/src/dataParser.h |only randomForestSRC-1.6.1/randomForestSRC/src/entry.c |only randomForestSRC-1.6.1/randomForestSRC/src/entry.h |only randomForestSRC-1.6.1/randomForestSRC/src/extern.h |only randomForestSRC-1.6.1/randomForestSRC/src/factor.h |only randomForestSRC-1.6.1/randomForestSRC/src/factorOps.c |only randomForestSRC-1.6.1/randomForestSRC/src/factorOps.h |only randomForestSRC-1.6.1/randomForestSRC/src/global.h |only randomForestSRC-1.6.1/randomForestSRC/src/importance.c |only randomForestSRC-1.6.1/randomForestSRC/src/importance.h |only randomForestSRC-1.6.1/randomForestSRC/src/impute.c |only randomForestSRC-1.6.1/randomForestSRC/src/impute.h |only randomForestSRC-1.6.1/randomForestSRC/src/node.h |only randomForestSRC-1.6.1/randomForestSRC/src/nodeOps.c |only randomForestSRC-1.6.1/randomForestSRC/src/nodeOps.h |only randomForestSRC-1.6.1/randomForestSRC/src/nrutil.c |only randomForestSRC-1.6.1/randomForestSRC/src/nrutil.h |only randomForestSRC-1.6.1/randomForestSRC/src/random.c |only randomForestSRC-1.6.1/randomForestSRC/src/random.h |only randomForestSRC-1.6.1/randomForestSRC/src/regression.c |only randomForestSRC-1.6.1/randomForestSRC/src/regression.h |only randomForestSRC-1.6.1/randomForestSRC/src/rfsrc.c |only randomForestSRC-1.6.1/randomForestSRC/src/rfsrc.h |only randomForestSRC-1.6.1/randomForestSRC/src/rfsrcUtil.c |only randomForestSRC-1.6.1/randomForestSRC/src/rfsrcUtil.h |only randomForestSRC-1.6.1/randomForestSRC/src/split.c |only randomForestSRC-1.6.1/randomForestSRC/src/split.h |only randomForestSRC-1.6.1/randomForestSRC/src/splitClas.c |only randomForestSRC-1.6.1/randomForestSRC/src/splitClas.h |only randomForestSRC-1.6.1/randomForestSRC/src/splitRegr.c |only randomForestSRC-1.6.1/randomForestSRC/src/splitRegr.h |only randomForestSRC-1.6.1/randomForestSRC/src/splitSurv.c |only randomForestSRC-1.6.1/randomForestSRC/src/splitSurv.h |only randomForestSRC-1.6.1/randomForestSRC/src/splitUspv.c |only randomForestSRC-1.6.1/randomForestSRC/src/splitUspv.h |only randomForestSRC-1.6.1/randomForestSRC/src/splitUtil.c |only randomForestSRC-1.6.1/randomForestSRC/src/splitUtil.h |only randomForestSRC-1.6.1/randomForestSRC/src/stack.c |only randomForestSRC-1.6.1/randomForestSRC/src/stack.h |only randomForestSRC-1.6.1/randomForestSRC/src/stackOutput.c |only randomForestSRC-1.6.1/randomForestSRC/src/stackOutput.h |only randomForestSRC-1.6.1/randomForestSRC/src/stackPreDefined.c |only randomForestSRC-1.6.1/randomForestSRC/src/stackPreDefined.h |only randomForestSRC-1.6.1/randomForestSRC/src/survival.c |only randomForestSRC-1.6.1/randomForestSRC/src/survival.h |only randomForestSRC-1.6.1/randomForestSRC/src/survivalE.c |only randomForestSRC-1.6.1/randomForestSRC/src/survivalE.h |only randomForestSRC-1.6.1/randomForestSRC/src/termOps.c |only randomForestSRC-1.6.1/randomForestSRC/src/termOps.h |only randomForestSRC-1.6.1/randomForestSRC/src/terminal.h |only randomForestSRC-1.6.1/randomForestSRC/src/trace.c |only randomForestSRC-1.6.1/randomForestSRC/src/trace.h |only randomForestSRC-1.6.1/randomForestSRC/src/tree.c |only randomForestSRC-1.6.1/randomForestSRC/src/tree.h |only randomForestSRC-1.6.1/randomForestSRC/src/treeUtil.c |only randomForestSRC-1.6.1/randomForestSRC/src/treeUtil.h |only randomForestSRC-2.0.0/randomForestSRC/DESCRIPTION | 10 randomForestSRC-2.0.0/randomForestSRC/MD5 | 186 - randomForestSRC-2.0.0/randomForestSRC/NAMESPACE | 9 randomForestSRC-2.0.0/randomForestSRC/R/data.utilities.R | 752 +++-- randomForestSRC-2.0.0/randomForestSRC/R/factor.utilities.R | 142 - randomForestSRC-2.0.0/randomForestSRC/R/find.interaction.R | 155 - randomForestSRC-2.0.0/randomForestSRC/R/generic.impute.rfsrc.R | 12 randomForestSRC-2.0.0/randomForestSRC/R/generic.predict.rfsrc.R | 1382 +++++----- randomForestSRC-2.0.0/randomForestSRC/R/impute.rfsrc.R | 156 - randomForestSRC-2.0.0/randomForestSRC/R/max.subtree.R | 430 +-- randomForestSRC-2.0.0/randomForestSRC/R/plot.competing.risk.R | 14 randomForestSRC-2.0.0/randomForestSRC/R/plot.rfsrc.R | 303 +- randomForestSRC-2.0.0/randomForestSRC/R/plot.survival.R | 290 +- randomForestSRC-2.0.0/randomForestSRC/R/plot.variable.R | 377 +- randomForestSRC-2.0.0/randomForestSRC/R/predict.rfsrc.R | 22 randomForestSRC-2.0.0/randomForestSRC/R/print.rfsrc.R | 185 - randomForestSRC-2.0.0/randomForestSRC/R/rf2rfz.R | 22 randomForestSRC-2.0.0/randomForestSRC/R/rfsrc.R | 733 +++-- randomForestSRC-2.0.0/randomForestSRC/R/rfsrc.news.R | 10 randomForestSRC-2.0.0/randomForestSRC/R/rfsrcSyn.R | 224 - randomForestSRC-2.0.0/randomForestSRC/R/stat.split.R | 32 randomForestSRC-2.0.0/randomForestSRC/R/utilities.R | 658 ++-- randomForestSRC-2.0.0/randomForestSRC/R/var.select.R | 472 +-- randomForestSRC-2.0.0/randomForestSRC/R/vimp.R | 90 randomForestSRC-2.0.0/randomForestSRC/R/zzz.R | 26 randomForestSRC-2.0.0/randomForestSRC/configure.ac | 2 randomForestSRC-2.0.0/randomForestSRC/data/breast.rda |binary randomForestSRC-2.0.0/randomForestSRC/data/follic.rda |binary randomForestSRC-2.0.0/randomForestSRC/data/hd.rda |binary randomForestSRC-2.0.0/randomForestSRC/data/nutrigenomic.rda |only randomForestSRC-2.0.0/randomForestSRC/data/pbc.rda |binary randomForestSRC-2.0.0/randomForestSRC/data/vdv.rda |binary randomForestSRC-2.0.0/randomForestSRC/data/veteran.rda |binary randomForestSRC-2.0.0/randomForestSRC/data/wihs.rda |binary randomForestSRC-2.0.0/randomForestSRC/inst/CITATION | 20 randomForestSRC-2.0.0/randomForestSRC/inst/NEWS | 18 randomForestSRC-2.0.0/randomForestSRC/inst/doc/rsf-Rnews.pdf |binary randomForestSRC-2.0.0/randomForestSRC/man/breast.Rd | 52 randomForestSRC-2.0.0/randomForestSRC/man/find.interaction.Rd | 171 - randomForestSRC-2.0.0/randomForestSRC/man/follic.Rd | 25 randomForestSRC-2.0.0/randomForestSRC/man/hd.Rd | 26 randomForestSRC-2.0.0/randomForestSRC/man/impute.Rd | 178 - randomForestSRC-2.0.0/randomForestSRC/man/max.subtree.Rd | 168 - randomForestSRC-2.0.0/randomForestSRC/man/nutrigenomic.Rd |only randomForestSRC-2.0.0/randomForestSRC/man/pbc.Rd | 28 randomForestSRC-2.0.0/randomForestSRC/man/plot.competing.risk.Rd | 18 randomForestSRC-2.0.0/randomForestSRC/man/plot.rfsrc.Rd | 16 randomForestSRC-2.0.0/randomForestSRC/man/plot.survival.Rd | 74 randomForestSRC-2.0.0/randomForestSRC/man/plot.variable.Rd | 162 - randomForestSRC-2.0.0/randomForestSRC/man/predict.rfsrc.Rd | 292 +- randomForestSRC-2.0.0/randomForestSRC/man/print.rfsrc.Rd | 21 randomForestSRC-2.0.0/randomForestSRC/man/randomForestSRC_package.Rd | 197 - randomForestSRC-2.0.0/randomForestSRC/man/rf2rfz.Rd | 28 randomForestSRC-2.0.0/randomForestSRC/man/rfsrc.Rd | 1176 ++++---- randomForestSRC-2.0.0/randomForestSRC/man/rfsrc.news.Rd | 8 randomForestSRC-2.0.0/randomForestSRC/man/rfsrcSyn.Rd | 75 randomForestSRC-2.0.0/randomForestSRC/man/stat.split.Rd | 96 randomForestSRC-2.0.0/randomForestSRC/man/var.select.Rd | 306 +- randomForestSRC-2.0.0/randomForestSRC/man/veteran.Rd | 18 randomForestSRC-2.0.0/randomForestSRC/man/vimp.Rd | 63 randomForestSRC-2.0.0/randomForestSRC/man/wihs.Rd | 21 randomForestSRC-2.0.0/randomForestSRC/src/randomForestSRC.c |only randomForestSRC-2.0.0/randomForestSRC/src/randomForestSRC.h |only randomForestSRC-2.0.0/randomForestSRC/src/splitCustom.c | 704 ++++- randomForestSRC-2.0.0/randomForestSRC/src/splitCustom.h | 179 - 127 files changed, 6091 insertions(+), 4743 deletions(-)
More information about randomForestSRC at CRAN
Permanent link
Title: Scale Bar, North Arrow, and Pretty Margins in R
Description: Automates the process of creating a scale bar and north arrow in
any package that uses base graphics to plot in R. Bounding box tools help find and manipulate
extents. Finally, there is a function to automate the process of setting margins, plotting
the map, scalebar, and north arrow, and resetting graphic parameters upon completion.
Author: Dewey Dunnington <dewey@fishandwhistle.net>
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>
Diff between prettymapr versions 0.1.1 dated 2015-10-11 and 0.1.3 dated 2015-12-07
DESCRIPTION | 12 +++++++----- MD5 | 8 ++++---- R/prettymap.R | 9 +++++---- man/prettymap.Rd | 10 ++++++---- man/prettymapr-package.Rd | 11 ++++------- 5 files changed, 26 insertions(+), 24 deletions(-)
Title: NeuroAnatomy Toolbox ('nat') Extension for Handling Template
Brains
Description: Extends package 'nat' (NeuroAnatomy Toolbox) by providing objects
and functions for handling template brains.
Author: James Manton and Gregory Jefferis
Maintainer: James Manton <ajd.manton@googlemail.com>
Diff between nat.templatebrains versions 0.6.1 dated 2015-10-08 and 0.6.2 dated 2015-12-07
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NEWS | 4 ++++ R/reg_repos.R | 18 +++++++++++++++--- 4 files changed, 27 insertions(+), 11 deletions(-)
More information about nat.templatebrains at CRAN
Permanent link
Title: Calculate Agreement or Consensus in Ordered Rating Scales
Description: Calculate agreement or consensus in ordered rating scales. The package implements van der Eijk's (2001) measure of agreement A, which can be used to describe agreement, consensus, or polarization among respondents. It also implements measures of consensus (dispersion) by Leik, Tatsle and Wierman, Blair and Lacy, Kvalseth, and Berry and Mielke. Furthermore, an implementation of Galtungs AJUS-system is provided to classify distributions, as well as a function to identify the position of multiple modes.
Author: Didier Ruedin
Maintainer: Didier Ruedin <didier.ruedin@wolfson.oxon.org>
Diff between agrmt versions 1.39 dated 2014-12-06 and 1.39.3 dated 2015-12-07
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- NAMESPACE | 2 ++ R/BerryMielke.R | 2 +- build/vignette.rds |binary 5 files changed, 13 insertions(+), 11 deletions(-)