Title: Semiparametric Maximum Likelihood Method for Interactions
Gene-Environment in Case-Mother Control-Mother Designs
Description: Implements the method of general semiparametric maximum likelihood estimation for logistic models in case-mother control-mother designs.
Author: Moliere Nguile-Makao [aut, cre], Alexandre Bureau [aut]
Maintainer: Moliere Nguile-Makao <moliere.nguile@gmail.com>
Diff between SPmlficmcm versions 1.3 dated 2014-12-08 and 1.4 dated 2015-12-11
DESCRIPTION | 19 ++- MD5 | 36 +++--- NAMESPACE | 3 R/Est.Inpar.R | 2 R/Nlsysteq.R | 2 R/SPmlficmcm-internal.R | 250 +++++++++++++++++++++++----------------------- R/Spmlficmcm.R | 10 - R/fct_invCap.R | 2 R/fgp_mf1.R | 1 R/fpol1.R | 2 R/fpolm.R | 2 R/ft_gradientCas1.R | 16 +- R/ft_gradientCasM.R | 38 +++--- R/ft_likhoodCas1.R | 2 R/ft_likhoodCasM.R | 14 +- build |only inst |only man/Est.Inpar.Rd | 22 +--- man/SPmlficmcm-package.Rd | 26 ++-- man/Spmlficmcm.Rd | 4 20 files changed, 228 insertions(+), 223 deletions(-)
Title: Ranking-Based Variable Selection
Description: Implements the Ranking-Based Variable Selection
algorithm for variable selection in high-dimensional data.
Author: Rafal Baranowski, Patrick Breheny, Isaac Turner
Maintainer: Rafal Baranowski <r.baranowski@lse.ac.uk>
Diff between rbvs versions 1.0.1 dated 2015-12-10 and 1.0.2 dated 2015-12-11
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/sort_r.h | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Thematic Maps
Description: Thematic maps are geographical maps in which statistical data are
visualized. This package offers a flexible, layer-based, way to create thematic
maps, such as choropleths and bubble maps.
Author: Martijn Tennekes [aut, cre],
Joel Gombin [ctb],
Kent Russell [ctb],
Richard Zijdeman [ctb]
Maintainer: Martijn Tennekes <mtennekes@gmail.com>
Diff between tmap versions 1.0 dated 2015-05-28 and 1.2 dated 2015-12-11
tmap-1.0/tmap/R/get_alpha_col.R |only tmap-1.0/tmap/R/legend_plot.R |only tmap-1.2/tmap/DESCRIPTION | 34 + tmap-1.2/tmap/MD5 | 205 +++++---- tmap-1.2/tmap/NAMESPACE | 140 ++++++ tmap-1.2/tmap/NEWS | 23 + tmap-1.2/tmap/R/animation_tmap.R | 49 -- tmap-1.2/tmap/R/append_data.R | 6 tmap-1.2/tmap/R/approx_areas.R | 3 tmap-1.2/tmap/R/bb.R |only tmap-1.2/tmap/R/calc_densities.R | 1 tmap-1.2/tmap/R/cat2pal.R | 11 tmap-1.2/tmap/R/end_of_the_world.R |only tmap-1.2/tmap/R/get_asp_ratio.R | 17 tmap-1.2/tmap/R/get_proj4_code.R | 78 ++- tmap-1.2/tmap/R/get_raster_data.R | 3 tmap-1.2/tmap/R/get_sepia_col.R |only tmap-1.2/tmap/R/grid_shp.R | 89 ++++ tmap-1.2/tmap/R/gridplot.R | 3 tmap-1.2/tmap/R/is_projected.R | 2 tmap-1.2/tmap/R/itmap.R |only tmap-1.2/tmap/R/kde2D.R |only tmap-1.2/tmap/R/legend_hist.R | 16 tmap-1.2/tmap/R/legend_prepare.R | 90 +--- tmap-1.2/tmap/R/lines_midpoints.R |only tmap-1.2/tmap/R/map2scale.R | 44 +- tmap-1.2/tmap/R/map_coloring.R |only tmap-1.2/tmap/R/meta_plot.R |only tmap-1.2/tmap/R/num2pal.R | 290 +++++++++---- tmap-1.2/tmap/R/onLoad.R |only tmap-1.2/tmap/R/one_line_per_lines.R |only tmap-1.2/tmap/R/pkg.R | 142 +++++- tmap-1.2/tmap/R/plot_all.R |only tmap-1.2/tmap/R/plot_map.R | 626 ++++++++++++------------------ tmap-1.2/tmap/R/plot_misc_functions.R |only tmap-1.2/tmap/R/pointLabelGrid.R |only tmap-1.2/tmap/R/print_tmap.R | 163 ++++++- tmap-1.2/tmap/R/process_bubbles.R | 169 ++------ tmap-1.2/tmap/R/process_col_vector.R |only tmap-1.2/tmap/R/process_color.R |only tmap-1.2/tmap/R/process_data.R | 2 tmap-1.2/tmap/R/process_fill.R | 166 +++---- tmap-1.2/tmap/R/process_layers.R | 43 +- tmap-1.2/tmap/R/process_lines.R | 150 +++---- tmap-1.2/tmap/R/process_meta.R | 87 +++- tmap-1.2/tmap/R/process_raster.R | 143 ++++-- tmap-1.2/tmap/R/process_shapes.R | 164 +++---- tmap-1.2/tmap/R/process_text.R | 386 +++++++++++++++--- tmap-1.2/tmap/R/process_tm.R | 155 +++++-- tmap-1.2/tmap/R/qtm.R | 64 ++- tmap-1.2/tmap/R/read_GPX.R |only tmap-1.2/tmap/R/read_osm.R |only tmap-1.2/tmap/R/read_shape.R | 3 tmap-1.2/tmap/R/sample_dots.R |only tmap-1.2/tmap/R/save_tmap.R |only tmap-1.2/tmap/R/sbind.R | 5 tmap-1.2/tmap/R/set_projection.R | 70 +-- tmap-1.2/tmap/R/smooth_map.R |only tmap-1.2/tmap/R/smooth_raster_cover.R |only tmap-1.2/tmap/R/split_g.R |only tmap-1.2/tmap/R/split_shps.R | 25 - tmap-1.2/tmap/R/split_tm.R | 6 tmap-1.2/tmap/R/style_catalogue.R |only tmap-1.2/tmap/R/tm_layers.R | 361 ++++++++++++----- tmap-1.2/tmap/R/tm_layout.R | 262 +++++++++++- tmap-1.2/tmap/R/tm_misc_elements.R | 104 +++- tmap-1.2/tmap/R/tm_shape.R | 41 - tmap-1.2/tmap/R/to_raster.R |only tmap-1.2/tmap/build/vignette.rds |binary tmap-1.2/tmap/data/Europe.rda |binary tmap-1.2/tmap/data/NLD_muni.rda |binary tmap-1.2/tmap/data/NLD_prov.rda |binary tmap-1.2/tmap/data/World.rda |binary tmap-1.2/tmap/data/land.rda |binary tmap-1.2/tmap/data/rivers.rda |binary tmap-1.2/tmap/inst/doc/tmap-nutshell.Rmd | 2 tmap-1.2/tmap/inst/doc/tmap-nutshell.html | 6 tmap-1.2/tmap/man/Shapes.Rd | 6 tmap-1.2/tmap/man/animation_tmap.Rd | 49 +- tmap-1.2/tmap/man/append_data.Rd | 2 tmap-1.2/tmap/man/approx_areas.Rd | 2 tmap-1.2/tmap/man/bb.Rd |only tmap-1.2/tmap/man/calc_densities.Rd | 4 tmap-1.2/tmap/man/get_IDs.Rd | 2 tmap-1.2/tmap/man/get_asp_ratio.Rd | 11 tmap-1.2/tmap/man/get_proj4.Rd |only tmap-1.2/tmap/man/itmap.Rd |only tmap-1.2/tmap/man/land.Rd | 2 tmap-1.2/tmap/man/map_coloring.Rd |only tmap-1.2/tmap/man/metro.Rd | 2 tmap-1.2/tmap/man/plus-.tmap.Rd | 2 tmap-1.2/tmap/man/points_to_raster.Rd |only tmap-1.2/tmap/man/poly_to_raster.Rd |only tmap-1.2/tmap/man/polygons.Rd | 98 ++-- tmap-1.2/tmap/man/print.tmap.Rd | 5 tmap-1.2/tmap/man/qtm.Rd | 38 + tmap-1.2/tmap/man/read_GPX.Rd |only tmap-1.2/tmap/man/read_osm.Rd |only tmap-1.2/tmap/man/read_shape.Rd | 8 tmap-1.2/tmap/man/rivers.Rd | 2 tmap-1.2/tmap/man/sample_dots.Rd |only tmap-1.2/tmap/man/save_tmap.Rd |only tmap-1.2/tmap/man/sbind.Rd | 2 tmap-1.2/tmap/man/set_projection.Rd | 46 +- tmap-1.2/tmap/man/smooth_map.Rd |only tmap-1.2/tmap/man/smooth_raster_cover.Rd |only tmap-1.2/tmap/man/split_shapes.Rd | 16 tmap-1.2/tmap/man/style_catalogue.Rd |only tmap-1.2/tmap/man/tm_bubbles.Rd | 87 ++-- tmap-1.2/tmap/man/tm_compass.Rd |only tmap-1.2/tmap/man/tm_credits.Rd | 26 - tmap-1.2/tmap/man/tm_facets.Rd | 24 - tmap-1.2/tmap/man/tm_grid.Rd | 25 - tmap-1.2/tmap/man/tm_iso.Rd |only tmap-1.2/tmap/man/tm_layout.Rd | 293 +++++++++++--- tmap-1.2/tmap/man/tm_lines.Rd | 73 ++- tmap-1.2/tmap/man/tm_raster.Rd | 69 +-- tmap-1.2/tmap/man/tm_scale_bar.Rd | 21 - tmap-1.2/tmap/man/tm_shape.Rd | 53 -- tmap-1.2/tmap/man/tm_text.Rd | 124 +++++ tmap-1.2/tmap/man/tmap-element.Rd | 105 ----- tmap-1.2/tmap/man/tmap-package.Rd | 131 +++++- tmap-1.2/tmap/man/write_shape.Rd | 2 tmap-1.2/tmap/vignettes/tmap-nutshell.Rmd | 235 +++++++---- 124 files changed, 3891 insertions(+), 2123 deletions(-)
Title: Functions to Parse and Create XMCDA Files
Description: Functions which allow to read many XMCDA tags and transform them into R variables which are then usable in MCDA algorithms written in R. It also allows to write certain R variables into XML files respecting the XMCDA standard.
Author: Patrick Meyer and Sebastien Bigaret, with contributions from Krzysztof Ciomek.
Maintainer: Patrick Meyer <patrick.meyer@telecom-bretagne.eu>
Diff between RXMCDA versions 1.5.3 dated 2014-06-12 and 1.5.5 dated 2015-12-11
DESCRIPTION | 12 +-- MD5 | 12 +-- NAMESPACE | 6 - R/libxmcda.R | 98 ++++++++++++++++++++++----- inst/extdata/XMCDA-2.2.1.xsd |only man/putAlternativesAffectationsWithValues.Rd |only man/putCategoriesValues.Rd | 4 - tests/getParameters.R | 25 ++++++ 8 files changed, 122 insertions(+), 35 deletions(-)
Title: Pretty Heatmaps
Description: Implementation of heatmaps that offers more control
over dimensions and appearance.
Author: Raivo Kolde
Maintainer: Raivo Kolde <rkolde@gmail.com>
Diff between pheatmap versions 1.0.7 dated 2015-07-02 and 1.0.8 dated 2015-12-11
DESCRIPTION | 6 ++-- MD5 | 8 ++--- NEWS | 6 ++++ R/pheatmap.r | 79 +++++++++++++++++++++++++++++++++++++------------------- man/pheatmap.Rd | 33 ++++++++++++++--------- 5 files changed, 86 insertions(+), 46 deletions(-)
Title: Dental Surface Complexity Measurement Tools
Description: Surface topography calculations of Dirichlet's normal energy,
relief index, and orientation patch count for teeth using scans of enamel caps.
Importantly, for the relief index and orientation patch count calculations to
work, the scanned tooth files must be oriented with the occlusal plane parallel
to the x and y axes, and perpendicular to the z axis. The files should also be
simplified, and smoothed in some other software prior to uploading into R.
Author: James D. Pampush [aut, cre, cph],
Julia M. Winchester [aut, cph],
Paul E. Morse [aut, cph],
Alexander Q. Vining [aut, cph]
Maintainer: James D. Pampush <jdpampush@gmail.com>
Diff between molaR versions 0.1 dated 2015-10-29 and 0.2 dated 2015-12-11
DESCRIPTION | 22 ++++-- MD5 | 77 ++++++++++++------------ NAMESPACE | 17 +++-- R/DNE.R | 5 + R/DNE3d.R | 117 +++++++------------------------------ R/DNE_Legend.R |only R/OPC.R | 2 R/OPC3d.R | 117 ++++++++++++++++++++++++++----------- R/OPCr.R | 7 +- R/RFI.R | 5 + R/RFI3d.R | 5 + R/compute_energy_per_face.R | 6 + R/edge_vertices.R | 4 - R/index_paired_directed_faces.R | 4 - R/read.AVIZO.ply.R | 8 +- R/remove_outliers.R | 4 - build/molaR.pdf |only build/vignette.rds |binary man/DNE.Rd | 14 ++-- man/DNE3d.Rd | 29 ++++----- man/DNE_Legend.Rd |only man/Directional_Bins.Rd | 2 man/Equal_Vertex_Normals.Rd | 2 man/Face_Normals.Rd | 2 man/OPC.Rd | 16 ++--- man/OPC3d.Rd | 36 +++++++---- man/OPCr.Rd | 20 +++--- man/RFI.Rd | 6 - man/RFI3d.Rd | 14 ++-- man/clustered_patches.Rd | 2 man/compute_energy_per_face.Rd | 4 - man/edge_vertices.Rd | 4 - man/face_areas.Rd | 4 - man/index_paired_directed_faces.Rd | 4 - man/patch_details.Rd | 2 man/patches_for_each_direction.Rd | 2 man/patches_per.Rd | 2 man/read.AVIZO.ply.Rd | 12 +-- man/remove_boundary_faces.Rd | 2 man/remove_outliers.Rd | 4 - man/vertex_to_face_list.Rd | 2 41 files changed, 312 insertions(+), 273 deletions(-)
Title: Digital PCR Analysis
Description: Analysis, visualisation and simulation of digital polymerase chain
reaction (dPCR).
Author: Michal Burdukiewicz [cre, aut],
Stefan Roediger [aut],
Bart Jacobs [aut],
Piotr Sobczyk [ctb]
Maintainer: Michal Burdukiewicz <michalburdukiewicz@gmail.com>
Diff between dpcR versions 0.1.4.0 dated 2015-04-09 and 0.2 dated 2015-12-11
dpcR-0.1.4.0/dpcR/R/adpcr-class.R |only dpcR-0.1.4.0/dpcR/R/ddpcr-class.R |only dpcR-0.1.4.0/dpcR/R/qpcrpp.R |only dpcR-0.1.4.0/dpcR/man/plot.qpcrpp.Rd |only dpcR-0.1.4.0/dpcR/man/qpcrpp-class.Rd |only dpcR-0.2/dpcR/CHANGELOG | 100 + dpcR-0.2/dpcR/DESCRIPTION | 45 dpcR-0.2/dpcR/MD5 | 271 +++-- dpcR-0.2/dpcR/NAMESPACE | 150 +- dpcR-0.2/dpcR/R/AUCtest.R | 136 +- dpcR-0.2/dpcR/R/White.R |only dpcR-0.2/dpcR/R/adpcr2panel.R |only dpcR-0.2/dpcR/R/adpcr2ppp.R | 146 +- dpcR-0.2/dpcR/R/binarize.R | 92 - dpcR-0.2/dpcR/R/bind_dpcr.R | 343 +++--- dpcR-0.2/dpcR/R/bioamp.R | 152 +- dpcR-0.2/dpcR/R/calc_breaks.R | 24 dpcR-0.2/dpcR/R/calc_coordinates.R |only dpcR-0.2/dpcR/R/calc_lambda.R | 40 dpcR-0.2/dpcR/R/classes.R |only dpcR-0.2/dpcR/R/compare_dens.R | 120 +- dpcR-0.2/dpcR/R/count_test-class.R | 292 ++--- dpcR-0.2/dpcR/R/create_dpcr.R | 148 +- dpcR-0.2/dpcR/R/dPCRmethyl.R |only dpcR-0.2/dpcR/R/dpcR-package.R | 133 +- dpcR-0.2/dpcR/R/dpcReport_gui.R |only dpcR-0.2/dpcR/R/dpcr_calculator.R | 33 dpcR-0.2/dpcR/R/dpcr_density.R | 256 +---- dpcR-0.2/dpcR/R/dpcr_density_gui.R | 25 dpcR-0.2/dpcR/R/dpcr_density_table.R |only dpcR-0.2/dpcR/R/extract_dpcr.R | 131 +- dpcR-0.2/dpcR/R/fit_adpcr.R | 62 - dpcR-0.2/dpcR/R/fl.R | 2 dpcR-0.2/dpcR/R/get_k_n.R | 24 dpcR-0.2/dpcR/R/limit_cq.R | 335 +++--- dpcR-0.2/dpcR/R/many_peaks.R | 38 dpcR-0.2/dpcR/R/moments.R | 233 +--- dpcR-0.2/dpcR/R/num2int.R | 40 dpcR-0.2/dpcR/R/pds.R | 189 +-- dpcR-0.2/dpcR/R/pds_raw.R | 250 ++-- dpcR-0.2/dpcR/R/plot_distr.R | 92 - dpcR-0.2/dpcR/R/plot_panel.R | 304 ++--- dpcR-0.2/dpcR/R/plot_vf_circ.R | 6 dpcR-0.2/dpcR/R/plot_vic_fam.R | 260 ++--- dpcR-0.2/dpcR/R/print_summary.R | 56 - dpcR-0.2/dpcR/R/qdpcr.R |only dpcR-0.2/dpcR/R/qpcr2pp.R |only dpcR-0.2/dpcR/R/qpcr_analyser.R | 320 +++--- dpcR-0.2/dpcR/R/read_dpcr.R |only dpcR-0.2/dpcR/R/rename_dpcr.R |only dpcR-0.2/dpcR/R/rtadpcr.R | 62 - dpcR-0.2/dpcR/R/safe_efficiency.R | 20 dpcR-0.2/dpcR/R/show_dpcr.R | 85 - dpcR-0.2/dpcR/R/sim_adpcr.R | 199 +-- dpcR-0.2/dpcR/R/sim_ddpcr.R | 182 +-- dpcR-0.2/dpcR/R/sim_ddpcr_bkm.R | 596 +++++------ dpcR-0.2/dpcR/R/simulations.R | 129 +- dpcR-0.2/dpcR/R/six_panels.R |only dpcR-0.2/dpcR/R/summary_dpcr.R | 217 ++-- dpcR-0.2/dpcR/R/test_counts.R | 430 ++++---- dpcR-0.2/dpcR/R/test_counts_gui.R | 22 dpcR-0.2/dpcR/R/test_panel.R | 117 +- dpcR-0.2/dpcR/R/test_peaks.R | 210 ++-- dpcR-0.2/dpcR/R/test_ratio.R | 306 +++--- dpcR-0.2/dpcR/R/valid_amp.R | 10 dpcR-0.2/dpcR/R/y_val_conf.R | 26 dpcR-0.2/dpcR/README.md | 56 - dpcR-0.2/dpcR/build/vignette.rds |binary dpcR-0.2/dpcR/data/White.rda |only dpcR-0.2/dpcR/data/dPCRmethyl.rda |only dpcR-0.2/dpcR/data/datalist | 9 dpcR-0.2/dpcR/data/many_peaks.rda |binary dpcR-0.2/dpcR/data/pds.rda |binary dpcR-0.2/dpcR/data/pds_raw.rda |binary dpcR-0.2/dpcR/data/six_panels.rda |only dpcR-0.2/dpcR/inst/CITATION |only dpcR-0.2/dpcR/inst/doc/overview.R | 291 ++++- dpcR-0.2/dpcR/inst/doc/overview.Rmd | 531 ++++++++-- dpcR-0.2/dpcR/inst/doc/overview.html | 1319 +++++++++++++++++++------- dpcR-0.2/dpcR/inst/dpcReport |only dpcR-0.2/dpcR/inst/dpcr_density_gui/server.R | 146 +- dpcR-0.2/dpcR/inst/dpcr_density_gui/ui.R | 48 dpcR-0.2/dpcR/inst/test_counts_gui/readme.md | 20 dpcR-0.2/dpcR/inst/test_counts_gui/server.R | 90 - dpcR-0.2/dpcR/inst/test_counts_gui/ui.R | 54 - dpcR-0.2/dpcR/man/White.Rd |only dpcR-0.2/dpcR/man/adpcr-class.Rd | 117 +- dpcR-0.2/dpcR/man/adpcr2panel.Rd |only dpcR-0.2/dpcR/man/adpcr2ppp.Rd | 124 +- dpcR-0.2/dpcR/man/binarize.Rd | 71 - dpcR-0.2/dpcR/man/bind_dpcr-methods.Rd | 131 +- dpcR-0.2/dpcR/man/bioamp.Rd | 104 +- dpcR-0.2/dpcR/man/calc_coordinates.Rd |only dpcR-0.2/dpcR/man/compare_dens.Rd | 73 - dpcR-0.2/dpcR/man/count_test-class.Rd | 133 +- dpcR-0.2/dpcR/man/create_dpcr.Rd | 156 +-- dpcR-0.2/dpcR/man/dPCRmethyl.Rd |only dpcR-0.2/dpcR/man/ddpcr-class.Rd | 97 - dpcR-0.2/dpcR/man/dpcR-package.Rd | 120 +- dpcR-0.2/dpcR/man/dpcReport.Rd |only dpcR-0.2/dpcR/man/dpcr-class.Rd |only dpcR-0.2/dpcR/man/dpcr_density.Rd | 209 +--- dpcR-0.2/dpcR/man/dpcr_density_gui.Rd | 46 dpcR-0.2/dpcR/man/dpcr_density_table.Rd |only dpcR-0.2/dpcR/man/extract_dpcr.Rd | 116 +- dpcR-0.2/dpcR/man/limit_cq.Rd | 194 +-- dpcR-0.2/dpcR/man/many_peaks.Rd | 44 dpcR-0.2/dpcR/man/moments-methods.Rd | 131 +- dpcR-0.2/dpcR/man/num2int.Rd | 44 dpcR-0.2/dpcR/man/pds.Rd | 209 +--- dpcR-0.2/dpcR/man/pds_raw.Rd | 271 ++--- dpcR-0.2/dpcR/man/plot.qdpcr.Rd |only dpcR-0.2/dpcR/man/plot_panel.Rd | 231 ++-- dpcR-0.2/dpcR/man/plot_vic_fam.Rd | 146 +- dpcR-0.2/dpcR/man/qdpcr-class.Rd |only dpcR-0.2/dpcR/man/qpcr2pp.Rd | 200 ++- dpcR-0.2/dpcR/man/qpcr_analyser.Rd | 226 ++-- dpcR-0.2/dpcR/man/read_BioMark.Rd |only dpcR-0.2/dpcR/man/read_QX100.Rd |only dpcR-0.2/dpcR/man/read_dpcr.Rd |only dpcR-0.2/dpcR/man/read_raw.Rd |only dpcR-0.2/dpcR/man/rename_dpcr.Rd |only dpcR-0.2/dpcR/man/rtadpcr-class.Rd | 74 - dpcR-0.2/dpcR/man/show-methods.Rd | 80 - dpcR-0.2/dpcR/man/sim_adpcr.Rd | 232 ++-- dpcR-0.2/dpcR/man/sim_ddpcr.Rd | 174 +-- dpcR-0.2/dpcR/man/six_panels.Rd |only dpcR-0.2/dpcR/man/summary-methods.Rd | 183 +-- dpcR-0.2/dpcR/man/test_counts.Rd | 163 +-- dpcR-0.2/dpcR/man/test_counts_gui.Rd | 46 dpcR-0.2/dpcR/man/test_panel.Rd | 167 +-- dpcR-0.2/dpcR/man/test_peaks.Rd | 176 +-- dpcR-0.2/dpcR/man/test_ratio.Rd | 202 ++- dpcR-0.2/dpcR/vignettes/adpcr_comp.RData |only dpcR-0.2/dpcR/vignettes/coverage_poster.RData |only dpcR-0.2/dpcR/vignettes/dpcr.bib |only dpcR-0.2/dpcR/vignettes/overview.Rmd | 531 ++++++++-- dpcR-0.2/dpcR/vignettes/vig.RData |only 138 files changed, 8474 insertions(+), 6770 deletions(-)
More information about AEDForecasting at CRAN
Permanent link
Title: Functions for Calculating Tolerance Intervals
Description: Statistical tolerance limits provide the limits between which we can expect to find a specified proportion of a sampled population with a given level of confidence. This package provides functions for estimating tolerance limits for various distributions. Plotting is also available for tolerance limits of continuous random variables.
Author: Derek S. Young [aut, cre]
Maintainer: Derek S. Young <derek.young@uky.edu>
Diff between tolerance versions 1.1.0 dated 2015-04-15 and 1.1.1 dated 2015-12-11
DESCRIPTION | 13 +-- MD5 | 22 +++-- NAMESPACE | 17 ++++ NEWS | 8 ++ R/bayesnormtolint.R |only R/exttolint.R | 20 +++-- R/negbintolint.R | 173 +++++++++++++++++++++++++++++------------------ R/normss.R |only man/bayesnormtolint.Rd |only man/normss.Rd |only man/poislindll.Rd | 82 +++++++++++----------- man/poislindtolint.Rd | 2 man/tolerance.package.Rd | 82 +++++++++++----------- man/zmll.Rd | 128 +++++++++++++++++----------------- 14 files changed, 314 insertions(+), 233 deletions(-)
Title: Methods for Statistical Disclosure Control in Tabular Data
Description: Methods for statistical disclosure control in
tabular data such as primary and secondary cell suppression are covered in
this package.
Author: Bernhard Meindl
Maintainer: Bernhard Meindl <bernhard.meindl@statistik.gv.at>
Diff between sdcTable versions 0.19.6 dated 2015-09-16 and 0.20.1 dated 2015-12-11
DESCRIPTION | 8 - MD5 | 16 +-- R/export_functions.r | 130 +++++++++++++-------------- R/methods_class_dataObj.r | 18 +++ R/methods_class_dimVar.r | 4 R/methods_class_sdcProblem.r | 4 inst/doc/sdcTable.pdf |binary man/protectLinkedTables.Rd | 2 src/suppMultDimTable.cpp | 203 ++++++++++++++++++++++--------------------- 9 files changed, 205 insertions(+), 180 deletions(-)
Title: Statistical Analysis of Fuzzy Data
Description: The aim of the package is to provide some basic functions
for doing statistics with one dimensional Fuzzy Data (in the
form of polygonal fuzzy numbers). In particular, the package
contains functions for the basic operations on the class of
fuzzy numbers (sum, scalar product, mean, median, Hukuhara difference)
as well as for calculating (Bertoluzza) distance,
sample variance, sample covariance, and the
Dempster-Shafer (levelwise) histogram. Moreover a function to
simulate fuzzy random variables, bootstrap tests for the
equality of means, and a function to do linear regression given
trapezoidal fuzzy data is included. Version 1.0 fixes some bugs
of previous versions.
Author: Wolfgang Trutschnig <wolfgang@trutschnig.net>, Asun Lubiano
<lubiano@uniovi.es>
Maintainer: Asun Lubiano <lubiano@uniovi.es>
Diff between SAFD versions 1.0 dated 2015-07-17 and 1.0-1 dated 2015-12-11
DESCRIPTION | 8 +- MD5 | 84 ++++++++++++++--------------- NAMESPACE | 2 R/DSfrequency.R | 12 ++-- R/DShistogram.R | 6 +- R/Fmedian.R | 14 ++-- R/Mmean.R | 12 ++-- R/Msum.R | 12 ++-- R/bertoluzza.R | 2 R/btest.mean.R | 12 ++-- R/btest2.mean.R | 13 ++-- R/btestk.mean.R | 11 +-- R/checking.R | 23 ++++---- R/hukuhara.R | 12 ++-- R/sc_mult.R | 6 +- R/translator.R | 6 +- data/Trees.rda |binary data/XX.rda |binary data/quality.rda |binary man/Bcov.Rd | 66 ----------------------- man/Bvar.Rd | 22 ------- man/DSfrequency.Rd | 99 ---------------------------------- man/DShistogram.Rd | 146 +-------------------------------------------------- man/Fmedian.Rd | 50 +---------------- man/Mmean.Rd | 31 ---------- man/Msum.Rd | 78 --------------------------- man/SAFD-package.Rd | 4 - man/Trees.Rd | 5 + man/XX.Rd | 2 man/bertoluzza.Rd | 44 +-------------- man/btest.mean.Rd | 60 +-------------------- man/btest2.mean.Rd | 80 +--------------------------- man/btestk.mean.Rd | 148 ---------------------------------------------------- man/checking.Rd | 92 -------------------------------- man/checking2.Rd | 81 ---------------------------- man/decomposer.Rd | 19 ------ man/defuzzify.Rd | 26 --------- man/generator.Rd | 100 ----------------------------------- man/hukuhara.Rd | 45 +-------------- man/lrmodel.Rd | 112 --------------------------------------- man/quality.Rd | 4 - man/sc_mult.Rd | 46 +--------------- man/translator.Rd | 50 +---------------- 43 files changed, 173 insertions(+), 1472 deletions(-)
Title: Various Programming Utilities
Description: Utility functions useful when programming and developing R packages.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between R.utils versions 2.1.0 dated 2015-05-28 and 2.2.0 dated 2015-12-11
R.utils-2.1.0/R.utils/.Rinstignore |only R.utils-2.2.0/R.utils/DESCRIPTION | 8 R.utils-2.2.0/R.utils/MD5 | 66 +-- R.utils-2.2.0/R.utils/NAMESPACE | 25 + R.utils-2.2.0/R.utils/NEWS | 32 + R.utils-2.2.0/R.utils/R/Arguments.R | 56 -- R.utils-2.2.0/R.utils/R/GString-class.R | 1 R.utils-2.2.0/R.utils/R/commandArgs.R | 28 + R.utils-2.2.0/R.utils/R/compressFile.R | 10 R.utils-2.2.0/R.utils/R/compressPDF.R | 286 ++++++------- R.utils-2.2.0/R.utils/R/downloadFile.R | 2 R.utils-2.2.0/R.utils/R/extract.array.R | 5 R.utils-2.2.0/R.utils/R/loadObject.R | 42 + R.utils-2.2.0/R.utils/R/mkdirs.R | 114 ++++- R.utils-2.2.0/R.utils/R/resample.R | 8 R.utils-2.2.0/R.utils/R/resetWarnings.R | 16 R.utils-2.2.0/R.utils/R/saveObject.R | 58 +- R.utils-2.2.0/R.utils/R/seqToHumanReadable.R | 89 ++-- R.utils-2.2.0/R.utils/R/seqToIntervals.R | 1 R.utils-2.2.0/R.utils/R/withTimeout.R | 2 R.utils-2.2.0/R.utils/R/writeDataFrame.R | 22 + R.utils-2.2.0/R.utils/man/commandArgs.Rd | 13 R.utils-2.2.0/R.utils/man/compressFile.Rd | 6 R.utils-2.2.0/R.utils/man/getWritablePathname.Arguments.Rd | 15 R.utils-2.2.0/R.utils/man/loadObject.Rd | 7 R.utils-2.2.0/R.utils/man/mkdirs.Rd | 18 R.utils-2.2.0/R.utils/man/resample.Rd | 2 R.utils-2.2.0/R.utils/man/resetWarnings.Rd | 35 - R.utils-2.2.0/R.utils/man/saveObject.Rd | 4 R.utils-2.2.0/R.utils/man/seqToHumanReadable.Rd | 11 R.utils-2.2.0/R.utils/tests/GString.R | 3 R.utils-2.2.0/R.utils/tests/loadObject.R | 34 + R.utils-2.2.0/R.utils/tests/mkdirs.R | 55 ++ R.utils-2.2.0/R.utils/tests/seqToHumanReadable.R | 43 + R.utils-2.2.0/R.utils/tests/withTimeout.R | 21 35 files changed, 740 insertions(+), 398 deletions(-)
Title: Recurrent Neural Network
Description: Implementation of a Recurrent Neural Network in R.
Author: Bastiaan Quast [aut, cre]
Maintainer: Bastiaan Quast <bquast@gmail.com>
Diff between rnn versions 0.1.0 dated 2015-11-30 and 0.2.0 dated 2015-12-11
rnn-0.1.0/rnn/inst/doc/RNN.R |only rnn-0.1.0/rnn/inst/doc/RNN.Rmd |only rnn-0.1.0/rnn/inst/doc/RNN.html |only rnn-0.1.0/rnn/vignettes/RNN.Rmd |only rnn-0.2.0/rnn/DESCRIPTION | 6 ++-- rnn-0.2.0/rnn/MD5 | 22 +++++++-------- rnn-0.2.0/rnn/NEWS | 7 ++++ rnn-0.2.0/rnn/R/rnn.R | 46 +++++++++++++++++++++----------- rnn-0.2.0/rnn/README.md | 12 ++++++++ rnn-0.2.0/rnn/build/vignette.rds |binary rnn-0.2.0/rnn/inst/doc/rnn.R |only rnn-0.2.0/rnn/inst/doc/rnn.Rmd |only rnn-0.2.0/rnn/inst/doc/rnn.html |only rnn-0.2.0/rnn/man/rnn.Rd | 27 +++++++++++++++--- rnn-0.2.0/rnn/tests/testthat/test_rnn.R | 26 +++++++++++------- rnn-0.2.0/rnn/vignettes/rnn.Rmd |only 16 files changed, 102 insertions(+), 44 deletions(-)
Title: Repeated Measures Proportional Odds Logistic Regression
Description: Fits linear models to repeated ordinal scores using GEE methodology.
Author: Nick Parsons
Maintainer: Nick Parsons <nick.parsons@warwick.ac.uk>
Diff between repolr versions 3.1 dated 2015-12-08 and 3.2 dated 2015-12-11
DESCRIPTION | 8 ++-- MD5 | 18 ++++----- R/repolr.R | 2 - src/cmat.cpp | 101 +++++++++++++++++++++++++++++--------------------------- src/hgmat.cpp | 30 ++++++++-------- src/icormat.cpp | 2 - src/ordgee.cpp | 32 ++++++++--------- src/potest.cpp | 8 ++-- src/smat.cpp | 2 - src/upalpha.cpp | 40 +++++++++++----------- 10 files changed, 124 insertions(+), 119 deletions(-)
Title: Parametric Network Enrichment Analysis
Description: Includes functions and examples to compute Parametric Network Enrichment Analysis.
Author: Mirko Signorelli, Veronica Vinciotti and Ernst C. Wit
Maintainer: Mirko Signorelli <m.signorelli@rug.nl>
Diff between pnea versions 1.2.1 dated 2015-12-02 and 1.2.2 dated 2015-12-11
pnea-1.2.1/pnea/man/netfromadj.Rd |only pnea-1.2.2/pnea/DESCRIPTION | 10 ++--- pnea-1.2.2/pnea/MD5 | 20 +++++----- pnea-1.2.2/pnea/NAMESPACE | 2 - pnea-1.2.2/pnea/R/pnea.R | 68 +++++++++++++---------------------- pnea-1.2.2/pnea/man/networkmatrix.Rd |only pnea-1.2.2/pnea/man/plot.pnea.Rd | 2 - pnea-1.2.2/pnea/man/pnea-package.Rd | 2 - pnea-1.2.2/pnea/man/pnea.Rd | 12 +++--- pnea-1.2.2/pnea/man/print.pnea.Rd | 6 +-- pnea-1.2.2/pnea/man/summary.pnea.Rd | 2 - pnea-1.2.2/pnea/man/yeast.Rd | 1 12 files changed, 57 insertions(+), 68 deletions(-)
Title: Time Series Clustering with Dynamic Time Warping
Description: Time series clustering using different techniques related to the
Dynamic Time Warping distance and its corresponding lower bounds. Additionally,
an implementation of k-Shape clustering is available.
Author: Alexis Sarda-Espinosa
Maintainer: Alexis Sarda <alexis.sarda@gmail.com>
Diff between dtwclust versions 1.2.0 dated 2015-11-15 and 1.3.0 dated 2015-12-11
DESCRIPTION | 16 - MD5 | 59 ++-- NAMESPACE | 68 ++-- R/DBA.R | 282 ++++++++++---------- R/NCCc.R | 74 ++--- R/SBD.R | 2 R/TADPole.R | 608 ++++++++++++++++++++++++++------------------ R/all_cent.R |only R/dtw-lb.R | 324 ++++++++++++++--------- R/dtw2.R | 12 R/dtwclust-classes.R | 63 ++-- R/dtwclust-plot.R | 24 - R/dtwclust.R | 484 +++++++++++++++++++---------------- R/dtwdistfun.R |only R/kcca-list.R | 166 ++++++------ R/lb-improved.R | 492 ++++++++++++++++++------------------ R/lb-keogh.R | 428 +++++++++++++++---------------- R/pkg.R | 32 +- R/reinterpolate.R | 36 +- R/shape-extraction.R | 200 +++++++------- R/utils.R | 419 +----------------------------- R/zscore.R | 71 +++-- README.md | 245 +++++++++-------- man/DBA.Rd | 2 man/TADPole.Rd | 39 ++ man/dtw_lb.Rd | 42 ++- man/dtwclust-class.Rd | 29 +- man/dtwclust-package.Rd | 8 man/dtwclust.Rd | 655 +++++++++++++++++++++++++++--------------------- man/plot-methods.Rd | 25 - man/zscore.Rd | 9 src |only 32 files changed, 2517 insertions(+), 2397 deletions(-)
Title: Access to Clarifai API
Description: Get description of images from Clarifai API. For more information,
see http://clarifai.com. Clarifai uses a large deep learning cloud to come
up with descriptive labels of the things in an image. It also provides how
confident it is about each of the labels.
Author: Gaurav Sood [aut, cre]
Maintainer: Gaurav Sood <gsood07@gmail.com>
Diff between clarifai versions 0.1 dated 2015-11-12 and 0.2 dated 2015-12-11
DESCRIPTION | 8 +++---- MD5 | 30 ++++++++++++++++++-------- NEWS |only R/tag_image_urls.R | 3 +- R/tag_images.R | 5 ++-- README.md | 12 ++++++++-- build/vignette.rds |binary inst/doc/poligrams.R |only inst/doc/poligrams.Rmd |only inst/doc/poligrams.html |only inst/doc/using_clarifai.R |only inst/doc/using_clarifai.Rmd | 40 +++++++---------------------------- inst/doc/using_clarifai.html | 22 ------------------- inst/extdata/congress.csv |only inst/extdata/labs_df.7z |only tests/testthat/test-feedback.R |only tests/testthat/test-get-token.R |only tests/testthat/test-tag-image-urls.R | 4 +-- tests/testthat/test-tag-images.R |only vignettes/poligrams.Rmd |only vignettes/using_clarifai.Rmd | 40 +++++++---------------------------- vignettes/using_clarifai.md |only 22 files changed, 59 insertions(+), 105 deletions(-)
More information about bioinactivation at CRAN
Permanent link
Title: Rmetrics - Financial Time Series Objects
Description: Environment for teaching
"Financial Engineering and Computational Finance".
Managing financial time series objects.
Author: Rmetrics Core Team,
Diethelm Wuertz [aut],
Tobias Setz [cre],
Yohan Chalabi [ctb]
Maintainer: Tobias Setz <tobias.setz@rmetrics.org>
Diff between timeSeries versions 3022.101 dated 2015-11-09 and 3022.101.1 dated 2015-12-11
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/base-sort.R | 3 ++- R/methods-is.R | 15 ++++++++------- 4 files changed, 17 insertions(+), 15 deletions(-)