Title: Functions for Calculating Daily Solar Radiation and
Evapotranspiration
Description: Calculating daily global solar radiation at horizontal surface using several well-known models (i.e. Angstrom-Prescott, Supit-Van Kappel, Hargreaves, Bristow and Campbell, and Mahmood-Hubbard), and model calibration based on ground-truth data, and (3) model auto-calibration. The FAO Penmann-Monteith equation to calculate evapotranspiration is also included.
Author: Jedrzej S. Bojanowski
Maintainer: Jedrzej S. Bojanowski <jedrzej.bojanowski@gmail.com>
Diff between sirad versions 2.3-0 dated 2015-10-18 and 2.3-1 dated 2015-12-12
sirad-2.3-0/sirad/R/ts.CMSAF.R |only sirad-2.3-0/sirad/man/ts.CMSAF.Rd |only sirad-2.3-1/sirad/DESCRIPTION | 10 +++++----- sirad-2.3-1/sirad/MD5 | 8 +++----- sirad-2.3-1/sirad/NAMESPACE | 3 +-- sirad-2.3-1/sirad/man/sirad-package.Rd | 4 ++-- 6 files changed, 11 insertions(+), 14 deletions(-)
Title: Mixed GAM Computation Vehicle with GCV/AIC/REML Smoothness
Estimation
Description: GAMs, GAMMs and other generalized ridge regression with
multiple smoothing parameter estimation by GCV, REML or UBRE/AIC.
Includes a gam() function, a wide variety of smoothers, JAGS
support and distributions beyond the exponential family.
Author: Simon Wood <simon.wood@r-project.org>
Maintainer: Simon Wood <simon.wood@r-project.org>
Diff between mgcv versions 1.8-9 dated 2015-10-31 and 1.8-10 dated 2015-12-12
ChangeLog | 25 + DESCRIPTION | 6 MD5 | 163 ++++---- NAMESPACE | 4 R/bam.r | 268 +++++++++++-- R/efam.r | 2 R/gamlss.r | 264 +++++++++++++ R/mgcv.r | 27 + R/misc.r | 31 + R/smooth.r | 14 R/soap.r | 3 man/Predict.matrix.soap.film.Rd | 2 man/Tweedie.Rd | 2 man/bam.Rd | 4 man/bam.update.Rd | 2 man/choose.k.Rd | 2 man/concurvity.Rd | 2 man/coxph.Rd | 2 man/exclude.too.far.Rd | 2 man/extract.lme.cov.Rd | 2 man/family.mgcv.Rd | 6 man/formXtViX.Rd | 2 man/formula.gam.Rd | 2 man/gam.Rd | 2 man/gam.check.Rd | 2 man/gam.control.Rd | 2 man/gam.fit.Rd | 2 man/gam.fit3.Rd | 2 man/gam.outer.Rd | 2 man/gam.selection.Rd | 2 man/gam.side.Rd | 8 man/gam2objective.Rd | 2 man/gamm.Rd | 2 man/gaulss.Rd | 4 man/get.var.Rd | 2 man/in.out.Rd | 2 man/inSide.Rd | 2 man/interpret.gam.Rd | 2 man/jagam.Rd | 2 man/ls.size.Rd | 2 man/magic.Rd | 2 man/mgcv-FAQ.Rd | 2 man/mgcv-package.Rd | 1 man/mono.con.Rd | 2 man/multinom.Rd |only man/mvn.Rd | 3 man/negbin.Rd | 2 man/new.name.Rd | 2 man/notExp.Rd | 2 man/notExp2.Rd | 2 man/null.space.dimension.Rd | 2 man/ocat.Rd | 3 man/pcls.Rd | 2 man/pdIdnot.Rd | 2 man/pdTens.Rd | 2 man/place.knots.Rd | 2 man/predict.bam.Rd | 6 man/print.gam.Rd | 2 man/qq.gam.Rd | 2 man/rig.Rd | 2 man/s.Rd | 2 man/scat.Rd | 3 man/smooth.construct.Rd | 2 man/smooth.construct.so.smooth.spec.Rd | 2 man/smoothCon.Rd | 2 man/te.Rd | 2 man/ziP.Rd | 3 man/ziplss.Rd | 3 src/coxph.c | 60 +-- src/discrete.c | 202 ++++++---- src/gdi.c | 634 ++++++++++++++++----------------- src/init.c | 5 src/magic.c | 96 ++-- src/mat.c | 295 +++++++-------- src/matrix.c | 42 +- src/mgcv.c | 25 - src/mgcv.h | 15 src/misc.c | 42 +- src/mvn.c | 28 - src/qp.c | 11 src/soap.c | 6 src/sparse-smooth.c | 140 +++---- src/tprs.c | 64 +-- 83 files changed, 1611 insertions(+), 995 deletions(-)
Title: Computational Routines for Proton and Ion Radiotherapy
Description: R interface to the open-source, ANSI C library 'libamtrack' (http://libamtrack.dkfz.org). 'libamtrack' provides computational routines for the prediction of detector response and radiobiological efficiency in heavy charged particle beams. It is designed for research in proton and ion dosimetry and radiotherapy. 'libamtrack' also includes many auxiliary physics routines for proton and ion beams. Original package and C-to-R conversion routines developed by Felix A. Klein.
Author: Steffen Greilich and the libamtrack team
Maintainer: Steffen Greilich <s.greilich@dkfz.de>
Diff between libamtrack versions 0.6.2 dated 2015-06-26 and 0.6.3 dated 2015-12-12
libamtrack-0.6.2/libamtrack/man/AT.CSDA.energy.after.slab.E.MeV.u.Rd |only libamtrack-0.6.2/libamtrack/man/AT.CSDA.range.Bethe.g.cm2.Rd |only libamtrack-0.6.2/libamtrack/man/AT.WEPL.Bethe.Rd |only libamtrack-0.6.3/libamtrack/DESCRIPTION | 10 libamtrack-0.6.3/libamtrack/MD5 | 164 ++++------ libamtrack-0.6.3/libamtrack/NAMESPACE | 8 libamtrack-0.6.3/libamtrack/R/initial.R | 2 libamtrack-0.6.3/libamtrack/R/libamtrack.R | 56 --- libamtrack-0.6.3/libamtrack/configure | 2 libamtrack-0.6.3/libamtrack/configure.ac | 2 libamtrack-0.6.3/libamtrack/man/AT.A.from.particle.no.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.CSDA.range.g.cm2.Rd |only libamtrack-0.6.3/libamtrack/man/AT.D.RDD.Gy.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.E.MeV.u.from.momentum.MeV.c.u.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.E.from.beta.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.Gauss.IDF.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.Gauss.PDF.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.I.eV.from.composition.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.Landau.IDF.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.Landau.PDF.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.Mass.Stopping.Power.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.Mass.Stopping.Power.with.no.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.Rutherford.SDCS.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.Stopping.Power.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.Stopping.Power.with.no.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.Vavilov.IDF.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.Vavilov.PDF.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.Z.from.particle.no.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.atomic.weight.from.Z.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.average.A.from.composition.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.average.Z.from.composition.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.beam.par.physical.to.technical.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.beam.par.technical.to.physical.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.beta.from.E.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.dose.Gy.from.fluence.cm2.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.dose.weighted.E.MeV.u.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.dose.weighted.LET.MeV.cm2.g.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.effective.Z.from.composition.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.effective.charge.from.E.MeV.u.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.electron.density.m3.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.electron.density.m3.from.composition.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.electron.density.m3.from.material.no.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.energy.loss.from.lambda.gauss.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.energy.loss.from.lambda.landau.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.energy.loss.from.lambda.vavilov.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.energy.straggling.MeV2.cm2.g.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.energy.straggling.after.slab.E.MeV.u.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.fluence.cm2.from.dose.Gy.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.fluence.weighted.E.MeV.u.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.fluence.weighted.LET.MeV.cm2.g.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.gamma.from.E.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.get.materials.data.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.kappa.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.lambda.landau.from.energy.loss.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.lambda.max.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.lambda.mean.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.lambda.vavilov.from.energy.loss.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.max.E.transfer.MeV.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.max.E.transfer.MeV.new.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.max.electron.ranges.m.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.mean.energy.loss.keV.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.mean.number.of.tracks.contrib.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.momentum.MeV.c.u.from.E.MeV.u.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.nuclear.spin.from.particle.no.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.particle.no.from.Z.and.A.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.r.RDD.m.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.run.CPPSC.method.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.run.GSM.method.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.run.IGK.method.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.set.user.material.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.set.user.material.from.composition.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.stopping.power.ratio.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.total.D.Gy.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.total.fluence.cm2.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.translate.dose.into.DSB.distribution.Rd | 2 libamtrack-0.6.3/libamtrack/man/AT.xi.keV.Rd | 2 libamtrack-0.6.3/libamtrack/man/libamtrack-package.Rd | 9 libamtrack-0.6.3/libamtrack/src/AT.c | 8 libamtrack-0.6.3/libamtrack/src/AT.h | 8 libamtrack-0.6.3/libamtrack/src/AT_DataRange.c | 45 +- libamtrack-0.6.3/libamtrack/src/AT_DataRange.h | 34 -- libamtrack-0.6.3/libamtrack/src/AT_R_Wrapper.c | 96 ----- libamtrack-0.6.3/libamtrack/src/AT_R_Wrapper.h | 20 - libamtrack-0.6.3/libamtrack/src/AT_StoppingPowerDataBethe.h | 2 libamtrack-0.6.3/libamtrack/src/config.h | 8 85 files changed, 218 insertions(+), 386 deletions(-)
Title: Identify Global Objects in R Expressions
Description: Identifies global ("unknown") objects in R expressions by code
inspection using various strategies, e.g. conservative or liberal. The objective
of this package is to make it as simple as possible to identify global objects
for the purpose of exporting them in distributed compute environments.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between globals versions 0.5.0 dated 2015-10-14 and 0.6.0 dated 2015-12-12
DESCRIPTION | 12 ++++-- MD5 | 27 +++++++------- NAMESPACE | 31 +++++++++-------- NEWS | 11 +++++- R/Globals-class.R | 2 - R/cleanup.R | 2 - R/findGlobals.R | 83 +++++++++++++++++++++++++++++++++++----------- R/globalsOf.R | 12 ++++-- R/packagesOf.R | 2 - README.md |only man/Globals.Rd | 56 +++++++++++++++---------------- man/cleanup.Globals.Rd | 4 +- man/globalsOf.Rd | 20 ++++++----- man/packagesOf.Globals.Rd | 42 +++++++++++------------ tests/globalsOf.R | 35 ++++++++++++++++++- 15 files changed, 220 insertions(+), 119 deletions(-)
Title: Semiparametric Sample Selection Modelling with Continuous or
Discrete Response
Description: Routine for fitting continuous or discrete response copula sample selection models with semiparametric predictors, including linear and nonlinear effects.
Author: Giampiero Marra, Rosalba Radice, Malgorzata Wojtys and Karol Wyszynski
Maintainer: Giampiero Marra <giampiero.marra@ucl.ac.uk>
Diff between SemiParSampleSel versions 1.2 dated 2015-01-21 and 1.3 dated 2015-12-12
SemiParSampleSel-1.2/SemiParSampleSel/R/VuongClarke.bcm.r |only SemiParSampleSel-1.2/SemiParSampleSel/R/est.aver.r |only SemiParSampleSel-1.2/SemiParSampleSel/R/fit.SemiParSampleSel1.r |only SemiParSampleSel-1.2/SemiParSampleSel/R/print.est.aver.r |only SemiParSampleSel-1.2/SemiParSampleSel/R/ss.checks.r |only SemiParSampleSel-1.2/SemiParSampleSel/R/working.comp1.r |only SemiParSampleSel-1.2/SemiParSampleSel/man/VuongClarke.bcm.Rd |only SemiParSampleSel-1.2/SemiParSampleSel/man/est.aver.Rd |only SemiParSampleSel-1.2/SemiParSampleSel/man/fit.SemiParSampleSel1.Rd |only SemiParSampleSel-1.2/SemiParSampleSel/man/print.est.aver.Rd |only SemiParSampleSel-1.2/SemiParSampleSel/man/ss.checks.Rd |only SemiParSampleSel-1.2/SemiParSampleSel/man/working.comp1.Rd |only SemiParSampleSel-1.3/SemiParSampleSel/ChangeLog | 5 SemiParSampleSel-1.3/SemiParSampleSel/DESCRIPTION | 8 SemiParSampleSel-1.3/SemiParSampleSel/MD5 | 88 SemiParSampleSel-1.3/SemiParSampleSel/NAMESPACE | 41 SemiParSampleSel-1.3/SemiParSampleSel/R/S.m.r | 78 SemiParSampleSel-1.3/SemiParSampleSel/R/SemiParSampleSel.r | 535 ++ SemiParSampleSel-1.3/SemiParSampleSel/R/VuongClarke.r |only SemiParSampleSel-1.3/SemiParSampleSel/R/aver.r |only SemiParSampleSel-1.3/SemiParSampleSel/R/bitsgHs.r | 415 ++ SemiParSampleSel-1.3/SemiParSampleSel/R/conv.check.r |only SemiParSampleSel-1.3/SemiParSampleSel/R/copulaBitsD.R |only SemiParSampleSel-1.3/SemiParSampleSel/R/fit.SemiParSampleSel.r | 65 SemiParSampleSel-1.3/SemiParSampleSel/R/ghss.r | 139 SemiParSampleSel-1.3/SemiParSampleSel/R/ghssD.r | 2048 +--------- SemiParSampleSel-1.3/SemiParSampleSel/R/ghssDuniv.r |only SemiParSampleSel-1.3/SemiParSampleSel/R/marginBitsD.R |only SemiParSampleSel-1.3/SemiParSampleSel/R/pen.r | 133 SemiParSampleSel-1.3/SemiParSampleSel/R/plot.SemiParSampleSel.r | 48 SemiParSampleSel-1.3/SemiParSampleSel/R/post.check.R |only SemiParSampleSel-1.3/SemiParSampleSel/R/predict.SemiParSampleSel.r | 30 SemiParSampleSel-1.3/SemiParSampleSel/R/print.SemiParSampleSel.r | 188 SemiParSampleSel-1.3/SemiParSampleSel/R/print.aver.r |only SemiParSampleSel-1.3/SemiParSampleSel/R/print.summary.SemiParSampleSel.r | 243 - SemiParSampleSel-1.3/SemiParSampleSel/R/resp.check.R |only SemiParSampleSel-1.3/SemiParSampleSel/R/st.theta.star.R | 7 SemiParSampleSel-1.3/SemiParSampleSel/R/summary.SemiParSampleSel.r | 919 +++- SemiParSampleSel-1.3/SemiParSampleSel/R/theta.tau.r | 26 SemiParSampleSel-1.3/SemiParSampleSel/R/working.comp.r | 87 SemiParSampleSel-1.3/SemiParSampleSel/inst/CITATION | 10 SemiParSampleSel-1.3/SemiParSampleSel/man/SemiParSampleSel-package.Rd | 15 SemiParSampleSel-1.3/SemiParSampleSel/man/SemiParSampleSel.Rd | 214 - SemiParSampleSel-1.3/SemiParSampleSel/man/SemiParSampleSelObject.Rd | 26 SemiParSampleSel-1.3/SemiParSampleSel/man/VuongClarke.Rd |only SemiParSampleSel-1.3/SemiParSampleSel/man/aver.Rd |only SemiParSampleSel-1.3/SemiParSampleSel/man/bitsgHs.Rd | 2 SemiParSampleSel-1.3/SemiParSampleSel/man/conv.check.Rd |only SemiParSampleSel-1.3/SemiParSampleSel/man/copulaBitsD.Rd |only SemiParSampleSel-1.3/SemiParSampleSel/man/ghssDuniv.Rd |only SemiParSampleSel-1.3/SemiParSampleSel/man/marginBitsD.Rd |only SemiParSampleSel-1.3/SemiParSampleSel/man/plot.SemiParSampleSel.Rd | 19 SemiParSampleSel-1.3/SemiParSampleSel/man/post.check.Rd |only SemiParSampleSel-1.3/SemiParSampleSel/man/predict.SemiParSampleSel.Rd | 6 SemiParSampleSel-1.3/SemiParSampleSel/man/print.aver.Rd |only SemiParSampleSel-1.3/SemiParSampleSel/man/resp.check.Rd |only SemiParSampleSel-1.3/SemiParSampleSel/man/st.theta.star.Rd | 2 SemiParSampleSel-1.3/SemiParSampleSel/man/summary.SemiParSampleSel.Rd | 30 SemiParSampleSel-1.3/SemiParSampleSel/man/theta.tau.Rd | 3 SemiParSampleSel-1.3/SemiParSampleSel/man/working.comp.Rd | 6 60 files changed, 2998 insertions(+), 2438 deletions(-)
More information about SemiParSampleSel at CRAN
Permanent link
Title: Diagnostic Tools for Hierarchical (Multilevel) Linear Models
Description: A suite of diagnostic tools for hierarchical
(multilevel) linear models. The tools include
not only leverage and traditional deletion diagnostics (Cook's
distance, covratio, covtrace, and MDFFITS) but also
convenience functions and graphics for residual analysis. Models
can be fit using either lmer in the 'lme4' package or lme in the 'nlme' package,
but only two-level models fit using lme are currently supported.
Author: Adam Loy <loyad01@gmail.com>
Maintainer: Adam Loy <loyad01@gmail.com>
Diff between HLMdiag versions 0.3.0 dated 2015-06-22 and 0.3.1 dated 2015-12-12
DESCRIPTION | 14 ++++++++------ MD5 | 14 +++++++------- NAMESPACE | 17 ++++++++++++----- NEWS | 7 +++++++ R/group_level_residual_functions.R | 4 ++-- R/plot_functions.R | 4 ++-- R/utility_functions.R | 3 ++- man/dotplot_diag.Rd | 4 ++-- 8 files changed, 42 insertions(+), 25 deletions(-)
Title: Visually Exploring Random Forests
Description: Graphic elements for exploring Random Forests using the
randomForestSRC package for survival, regression and classification forests and
ggplot2 package plotting.
Author: John Ehrlinger <john.ehrlinger@gmail.com>
Maintainer: John Ehrlinger <john.ehrlinger@gmail.com>
Diff between ggRandomForests versions 1.2.0 dated 2015-11-15 and 1.2.1 dated 2015-12-12
DESCRIPTION | 8 +-- MD5 | 53 ++++++++++----------- NEWS | 7 ++ data/interaction_Boston.rda |binary data/interaction_iris.rda |binary data/interaction_pbc.rda |binary data/partial_Boston.rda |binary data/partial_coplot_Boston.rda |binary data/partial_coplot_Boston2.rda |binary data/partial_coplot_pbc.rda |binary data/partial_coplot_pbc2.rda |binary data/partial_iris.rda |binary data/partial_pbc.rda |binary data/rfsrc_Boston.rda |binary data/rfsrc_iris.rda |binary data/rfsrc_pbc.rda |binary data/rfsrc_pbc_test.rda |binary data/varsel_Boston.rda |binary data/varsel_iris.rda |binary data/varsel_pbc.rda |binary inst/doc/randomForestSRC-Regression.R | 10 +-- inst/doc/randomForestSRC-Regression.Rnw | 8 +-- inst/doc/randomForestSRC-Regression.pdf |binary inst/doc/randomForestSRC-Survival.Rnw | 9 ++- inst/doc/randomForestSRC-Survival.pdf |binary vignettes/randomForestSRC-Regression.Rnw | 4 - vignettes/randomForestSRC-Survival-concordance.tex |only vignettes/randomForestSRC-Survival.Rnw | 9 ++- 28 files changed, 60 insertions(+), 48 deletions(-)
More information about ggRandomForests at CRAN
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Title: A Future API for R
Description: A Future API for R is provided. In programming, a future is an
abstraction for a value that may be available at some point in the future.
The state of a future can either be unresolved or resolved. As soon as it is
resolved, the value is available. Futures are useful constructs in for instance
concurrent evaluation, e.g. multicore parallel processing and distributed
processing on compute clusters. The purpose of this package is to provide a
lightweight interface for using futures in R. Functions 'future()' and 'value()'
exist for creating futures and requesting their values. An infix assignment
operator '%<=%' exists for creating futures whose values are accessible by the
assigned variables (as promises). This package implements the synchronous "lazy"
and "eager" futures, and the asynchronous "multicore" future (not on Windows).
Additional types of futures are provided by other packages enhancing this
package.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future versions 0.8.2 dated 2015-10-14 and 0.9.0 dated 2015-12-12
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Title: Estimation in Dual Frame Surveys
Description: Point and interval estimation in dual frame surveys. In contrast
to classic sampling theory, where only one sampling frame is considered,
dual frame methodology assumes that there are two frames available for
sampling and that, overall, they cover the entire target population. Then,
two probability samples (one from each frame) are drawn and information
collected is suitably combined to get estimators of the parameter of
interest.
Author: Antonio Arcos <arcos@ugr.es>, Maria del Mar Rueda <mrueda@ugr.es>,
Maria Giovanna Ranalli <giovanna.ranalli@stat.unipg.it> and David Molina
<dmolinam@ugr.es>
Maintainer: David Molina <dmolinam@ugr.es>
Diff between Frames2 versions 0.1.2 dated 2015-10-19 and 0.2.1 dated 2015-12-12
DESCRIPTION | 11 ++-- MD5 | 107 +++++++++++++++++++++++++++--------------- NAMESPACE | 17 ++++++ R/DatMA.R |only R/DatMB.R |only R/DatPopM.R |only R/JackMLCDF.R |only R/JackMLCDW.R |only R/JackMLCSW.R |only R/JackMLDF.R |only R/JackMLDW.R |only R/JackMLSW.R |only R/MLCDF.R |only R/MLCDW.R |only R/MLCSW.R |only R/MLDF.R |only R/MLDW.R |only R/MLSW.R |only R/internal.R | 13 ++++- data/DatMA.txt.gz |only data/DatMB.txt.gz |only data/DatPopM.txt.gz |only inst/doc/estimation.Rnw | 2 inst/doc/estimation.pdf |binary inst/doc/formatting.data.Rnw | 2 inst/doc/formatting.data.pdf |binary man/BKA.Rd | 24 ++++----- man/CalDF.Rd | 30 +++++------ man/CalSF.Rd | 32 ++++++------ man/Compare.Rd | 12 ++-- man/CovHT.Rd | 5 - man/Dat.Rd | 6 +- man/DatA.Rd | 4 - man/DatB.Rd | 4 - man/DatMA.Rd |only man/DatMB.Rd |only man/DatPopM.Rd |only man/Domains.Rd | 2 man/FB.Rd | 8 +-- man/HT.Rd | 2 man/Hartley.Rd | 6 +- man/JackBKA.Rd | 12 ++-- man/JackCalDF.Rd | 14 ++--- man/JackCalSF.Rd | 20 +++---- man/JackFB.Rd | 8 +-- man/JackHartley.Rd | 8 +-- man/JackMLCDF.Rd |only man/JackMLCDW.Rd |only man/JackMLCSW.Rd |only man/JackMLDF.Rd |only man/JackMLDW.Rd |only man/JackMLSW.Rd |only man/JackPEL.Rd | 8 +-- man/JackPML.Rd | 12 ++-- man/JackSFRR.Rd | 22 ++++---- man/MLCDF.Rd |only man/MLCDW.Rd |only man/MLCSW.Rd |only man/MLDF.Rd |only man/MLDW.Rd |only man/MLSW.Rd |only man/PEL.Rd | 26 +++++----- man/PML.Rd | 10 +-- man/PiklA.Rd | 3 - man/PiklB.Rd | 3 - man/SFRR.Rd | 16 +++--- man/VarHT.Rd | 3 - man/WeightsCalDF.Rd | 26 +++++----- man/WeightsCalSF.Rd | 28 +++++----- vignettes/estimation.Rnw | 2 vignettes/formatting.data.Rnw | 2 71 files changed, 288 insertions(+), 222 deletions(-)
Title: Statistical Methods for Anthropometric Data
Description: Statistical methodologies especially developed to analyze anthropometric data. These methods are aimed at providing effective solutions to some commons problems related to Ergonomics and Anthropometry. They are based on clustering, the statistical concept of data depth, statistical shape analysis and archetypal analysis.
Author: Guillermo Vinue, Irene Epifanio, Amelia Simo, M. Victoria Ibanez, Juan Domingo, Guillermo Ayala
Maintainer: Guillermo Vinue <Guillermo.Vinue@uv.es>
Diff between Anthropometry versions 1.6 dated 2015-11-30 and 1.7 dated 2015-12-12
DESCRIPTION | 8 ++++---- MD5 | 40 ++++++++++++++++++++-------------------- NEWS | 6 ++++++ R/anthrCases.R | 3 ++- R/trimmOutl.R | 8 ++++---- inst/doc/Anthropometry.Rnw | 12 ++++++------ inst/doc/Anthropometry.pdf |binary man/Anthropometry-package.Rd | 4 ++-- man/LloydShapes.Rd | 12 ++++++------ man/USAFSurvey.Rd | 4 ++-- man/anthrCases.Rd | 12 ++++++------ man/projShapes.Rd | 10 +++++----- man/shapes3dShapes.Rd | 12 ++++++------ man/trimmOutl.Rd | 12 ++++++------ man/trimmedLloydShapes.Rd | 12 ++++++------ src/cast.c | 41 +++++++++++------------------------------ vignettes/Anthropometry.Rnw | 12 ++++++------ vignettes/hipam1.pdf |binary vignettes/hipam2.pdf |binary vignettes/trimowa1.pdf |binary vignettes/trimowa2.pdf |binary 21 files changed, 98 insertions(+), 110 deletions(-)
Title: Parametric Bootstrap and Kenward-Roger-Based Methods for Mixed
Model Comparison
Diff between pbkrtest versions 0.4-3 dated 2015-12-10 and 0.4-4 dated 2015-12-12
Description: Test in mixed effects models.
Attention is on mixed effects models as implemented in the
lme4 package.
The package implements a parametric bootstrap test and a Kenward-Roger
modification of F-tests for linear mixed effects models and a parametric bootstrap
test for generalized linear mixed models.
Author: Ulrich Halekoh
Maintainer: Søren Højsgaard
DESCRIPTION | 10 +++---
MD5 | 30 +++++++++---------
NAMESPACE | 31 +++++++++++++------
R/KR-Sigma-G2.R | 6 +--
R/KR-init-modcomp.R | 2 -
R/KR-modcomp.R | 2 -
R/KR-vcovAdj.R | 2 -
R/PB-modcomp.R | 2 -
R/PB-refdist.R | 2 -
R/PB-utils.R | 4 +-
R/modelCoercion.R | 4 +-
inst/doc/pbkrtest-introduction.pdf |binary
man/KRmodcomp.Rd | 4 +-
man/PBmodcomp.Rd | 9 ++++-
man/pbkrtest-internal.Rd | 59 +++++++++++++++++--------------------
man/vcovAdj.Rd | 5 +--
16 files changed, 94 insertions(+), 78 deletions(-)
Title: R Functions to Perform and Display Google Trends Queries
Description: An interface for retrieving and displaying the information returned
online by Google Trends is provided. Trends (number of hits) over the time as
well as geographic representation of the results can be displayed.
Author: Philippe Massicotte [aut, cre],
Dirk Eddelbuettel [aut]
Maintainer: Philippe Massicotte <pmassicotte@hotmail.com>
Diff between gtrendsR versions 1.3.0 dated 2015-11-28 and 1.3.1 dated 2015-12-12
DESCRIPTION | 8 MD5 | 24 - NAMESPACE | 26 - NEWS.md | 12 R/countries.R | 26 - R/gtrends.R | 1163 ++++++++++++++++++++++++++++------------------------- R/init.R | 32 - R/sport_trend.R | 64 +- README.md | 107 ++-- man/countries.Rd | 36 - man/gconnect.Rd | 110 ++--- man/gtrends.Rd | 187 ++++---- man/sport_trend.Rd | 84 +-- 13 files changed, 986 insertions(+), 893 deletions(-)
Title: Biological Structure Analysis
Description: Utilities to process, organize and explore protein structure, sequence and dynamics data. Features include the ability to read and write structure, sequence and dynamic trajectory data, perform sequence and structure database searches, data summaries, atom selection, alignment, superposition, rigid core identification, clustering, torsion analysis, distance matrix analysis, structure and sequence conservation analysis, normal mode analysis, principal component analysis of heterogeneous structure data, and correlation network analysis from normal mode and molecular dynamics data. In addition, various utility functions are provided to enable the statistical and graphical power of the R environment to work with biological sequence and structural data. Please refer to the URLs below for more information.
Author: Barry Grant, Xin-Qiu Yao, Lars Skjaerven, Julien Ide
Maintainer: Barry Grant <bjgrant@umich.edu>
Diff between bio3d versions 2.2-3 dated 2015-09-04 and 2.2-4 dated 2015-12-12
DESCRIPTION | 12 +++++------ MD5 | 26 ++++++++++++------------ R/clean.pdb.R | 16 +++++++-------- R/cmap.pdb.R | 2 - R/dm.xyz.R | 5 +++- R/hmmer.R | 31 ++++++++--------------------- R/read.ncdf.R | 44 ++++++++++++++++++++--------------------- R/read.pdb.R | 5 ++++ R/write.ncdf.R | 54 +++++++++++++++++++++++++-------------------------- data/aa.table.rda |binary data/atom.index.rda |binary man/bio3d.package.Rd | 4 +-- man/read.ncdf.Rd | 2 - man/write.ncdf.Rd | 2 - 14 files changed, 99 insertions(+), 104 deletions(-)