Title: Regular Expression Removal, Extraction, and Replacement Tools
Description: A collection of regular expression tools associated with the 'qdap' package
that may be useful outside of the context of discourse analysis. Tools include
removal/extraction/replacement of abbreviations, dates, dollar amounts, email
addresses, hash tags, numbers, percentages, citations, person tags, phone
numbers, times, and zip codes.
Author: Jason Gray [ctb],
Tyler Rinker [aut, cre]
Maintainer: Tyler Rinker <tyler.rinker@gmail.com>
Diff between qdapRegex versions 0.5.1 dated 2015-10-11 and 0.6.0 dated 2015-12-13
DESCRIPTION | 24 +++--- MD5 | 144 +++++++++++++++++++-------------------- NAMESPACE | 49 +++++++++++++ NEWS | 10 ++ R/rm_abbreviation.R | 10 ++ R/rm_between.R | 27 ++++--- R/rm_bracket.R | 64 ++++++++++++----- R/rm_caps.R | 10 ++ R/rm_caps_phrase.R | 10 ++ R/rm_citation.R | 45 ++++++++---- R/rm_citation_tex.R | 10 ++ R/rm_city_state.R | 10 ++ R/rm_city_state_zip.R | 10 ++ R/rm_date.R | 16 ++-- R/rm_default.R | 6 + R/rm_dollar.R | 10 ++ R/rm_email.R | 12 ++- R/rm_emoticon.R | 10 ++ R/rm_endmark.R | 14 ++- R/rm_hash.R | 10 ++ R/rm_nchar_words.R | 14 ++- R/rm_non_ascii.R | 12 ++- R/rm_non_words.R | 11 +-- R/rm_number.R | 15 ++-- R/rm_percent.R | 10 ++ R/rm_phone.R | 10 ++ R/rm_postal_code.R | 10 ++ R/rm_repeated_characters.R | 10 ++ R/rm_repeated_phrases.R | 10 ++ R/rm_repeated_words.R | 10 ++ R/rm_tag.R | 12 ++- R/rm_time.R | 33 +++++---- R/rm_title_name.R | 10 ++ R/rm_url.R | 20 ++++- R/rm_white.R | 85 ++++++++++++++++++++--- R/rm_zip.R | 18 +++- README.md | 98 +++++++++++++++++++++++--- data/regex_cheat.rda |binary data/regex_supplement.rda |binary data/regex_usa.rda |binary inst/CITATION | 4 - man/rm_abbreviation.Rd | 76 +++++++++++++++----- man/rm_between.Rd | 90 ++++++++++++++++++------ man/rm_bracket.Rd | 124 +++++++++++++++++++++++++-------- man/rm_caps.Rd | 75 +++++++++++++++----- man/rm_caps_phrase.Rd | 76 +++++++++++++++----- man/rm_citation.Rd | 107 +++++++++++++++++++++-------- man/rm_citation_tex.Rd | 75 +++++++++++++++----- man/rm_city_state.Rd | 76 +++++++++++++++----- man/rm_city_state_zip.Rd | 75 +++++++++++++++----- man/rm_date.Rd | 80 ++++++++++++++++----- man/rm_default.Rd | 72 +++++++++++++++---- man/rm_dollar.Rd | 74 +++++++++++++++----- man/rm_email.Rd | 76 +++++++++++++++----- man/rm_emoticon.Rd | 74 +++++++++++++++----- man/rm_endmark.Rd | 78 ++++++++++++++++----- man/rm_hash.Rd | 74 +++++++++++++++----- man/rm_nchar_words.Rd | 78 ++++++++++++++++----- man/rm_non_ascii.Rd | 76 +++++++++++++++----- man/rm_non_words.Rd | 77 +++++++++++++++------ man/rm_number.Rd | 76 +++++++++++++++----- man/rm_percent.Rd | 74 +++++++++++++++----- man/rm_phone.Rd | 74 +++++++++++++++----- man/rm_postal_code.Rd | 74 +++++++++++++++----- man/rm_repeated_characters.Rd | 76 +++++++++++++++----- man/rm_repeated_phrases.Rd | 76 +++++++++++++++----- man/rm_repeated_words.Rd | 76 +++++++++++++++----- man/rm_tag.Rd | 78 ++++++++++++++++----- man/rm_time.Rd | 154 +++++++++++++++++++++++++++++++----------- man/rm_title_name.Rd | 79 ++++++++++++++++----- man/rm_url.Rd | 87 ++++++++++++++++++----- man/rm_white.Rd | 108 +++++++++++++++++++++++++---- man/rm_zip.Rd | 82 ++++++++++++++++------ 73 files changed, 2671 insertions(+), 869 deletions(-)
Title: Functions that Apply to Rows and Columns of Matrices (and to
Vectors)
Description: High-performing functions operating on rows and columns of matrices, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized. There are also optimized vector-based methods, e.g. binMeans(), madDiff() and weightedMedians().
Author: Henrik Bengtsson [aut, cre, cph], Hector Corrada Bravo [ctb], Robert Gentleman [ctb], Ola Hossjer [ctb], Harris Jaffee [ctb], Dongcan Jiang [ctb], Peter Langfelder [ctb]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between matrixStats versions 0.15.0 dated 2015-10-27 and 0.50.0 dated 2015-12-13
matrixStats-0.15.0/matrixStats/src/logSumExp_internal.c |only matrixStats-0.15.0/matrixStats/src/logSumExp_internal.h |only matrixStats-0.15.0/matrixStats/tests/reports |only matrixStats-0.50.0/matrixStats/DESCRIPTION | 14 matrixStats-0.50.0/matrixStats/MD5 | 387 ++++++---- matrixStats-0.50.0/matrixStats/NAMESPACE | 1 matrixStats-0.50.0/matrixStats/NEWS | 12 matrixStats-0.50.0/matrixStats/R/anyMissing.R | 18 matrixStats-0.50.0/matrixStats/R/binCounts.R | 9 matrixStats-0.50.0/matrixStats/R/binMeans.R | 12 matrixStats-0.50.0/matrixStats/R/diff2.R | 9 matrixStats-0.50.0/matrixStats/R/logSumExp.R | 8 matrixStats-0.50.0/matrixStats/R/meanOver.R | 19 matrixStats-0.50.0/matrixStats/R/product.R | 6 matrixStats-0.50.0/matrixStats/R/rowAvgsPerColSet.R | 26 matrixStats-0.50.0/matrixStats/R/rowCollapse.R | 26 matrixStats-0.50.0/matrixStats/R/rowCounts.R | 99 ++ matrixStats-0.50.0/matrixStats/R/rowCumsums.R | 36 matrixStats-0.50.0/matrixStats/R/rowDiffs.R | 12 matrixStats-0.50.0/matrixStats/R/rowIQRs.R | 17 matrixStats-0.50.0/matrixStats/R/rowLogSumExps.R | 12 matrixStats-0.50.0/matrixStats/R/rowMads.R | 31 matrixStats-0.50.0/matrixStats/R/rowMedians.S4.R | 16 matrixStats-0.50.0/matrixStats/R/rowOrderStats.R | 24 matrixStats-0.50.0/matrixStats/R/rowProds.R | 18 matrixStats-0.50.0/matrixStats/R/rowQuantiles.R | 18 matrixStats-0.50.0/matrixStats/R/rowRanges.R | 28 matrixStats-0.50.0/matrixStats/R/rowRanks.R | 12 matrixStats-0.50.0/matrixStats/R/rowSds.R | 10 matrixStats-0.50.0/matrixStats/R/rowTabulates.R | 18 matrixStats-0.50.0/matrixStats/R/rowVars.R | 35 matrixStats-0.50.0/matrixStats/R/rowWeightedMeans.R | 23 matrixStats-0.50.0/matrixStats/R/rowWeightedMedians.R | 23 matrixStats-0.50.0/matrixStats/R/signTabulate.R | 8 matrixStats-0.50.0/matrixStats/R/sumOver.R | 18 matrixStats-0.50.0/matrixStats/R/validateIndices.R |only matrixStats-0.50.0/matrixStats/R/varDiff.R | 80 +- matrixStats-0.50.0/matrixStats/R/weightedMad.R | 35 matrixStats-0.50.0/matrixStats/R/weightedMean.R | 8 matrixStats-0.50.0/matrixStats/R/weightedMedian.R | 8 matrixStats-0.50.0/matrixStats/R/weightedVar.R | 43 - matrixStats-0.50.0/matrixStats/R/x_OP_y.R | 12 matrixStats-0.50.0/matrixStats/R/zzz.R | 10 matrixStats-0.50.0/matrixStats/build/vignette.rds |binary matrixStats-0.50.0/matrixStats/inst/benchmarking/anyMissing_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/benchmarking/binCounts_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/benchmarking/binMeans_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/benchmarking/colRowAlls_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/benchmarking/colRowAnyMissings_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/benchmarking/colRowAnys_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/benchmarking/colRowCounts_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/benchmarking/colRowCummins_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/benchmarking/colRowCumprods_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/benchmarking/colRowCumsums_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/benchmarking/colRowDiffs_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/benchmarking/colRowLogSumExps_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/benchmarking/colRowMads_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/benchmarking/colRowMedians_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/benchmarking/colRowMins_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/benchmarking/colRowOrderStats_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/benchmarking/colRowProds_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/benchmarking/colRowQuantiles_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/benchmarking/colRowRanges_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/benchmarking/colRowRanks_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/benchmarking/colRowTabulates_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/benchmarking/colRowVars_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/benchmarking/colRowWeightedMeans_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/benchmarking/colRowWeightedMedians_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/benchmarking/count_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/benchmarking/includes/results.md.rsp | 4 matrixStats-0.50.0/matrixStats/inst/benchmarking/logSumExp_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/benchmarking/madDiff_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/benchmarking/meanOver_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/benchmarking/product_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/benchmarking/sumOver_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/benchmarking/t_tx_OP_y_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/benchmarking/varDiff_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/benchmarking/weightedMean_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/benchmarking/weightedMedian_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/benchmarking/x_OP_y_subset.md.rsp |only matrixStats-0.50.0/matrixStats/inst/doc/matrixStats-methods.html | 6 matrixStats-0.50.0/matrixStats/inst/doc/matrixStats-methods.md.rsp | 2 matrixStats-0.50.0/matrixStats/man/anyMissing.Rd | 8 matrixStats-0.50.0/matrixStats/man/binCounts.Rd | 4 matrixStats-0.50.0/matrixStats/man/binMeans.Rd | 4 matrixStats-0.50.0/matrixStats/man/diff2.Rd | 4 matrixStats-0.50.0/matrixStats/man/logSumExp.Rd | 4 matrixStats-0.50.0/matrixStats/man/matrixStats-package.Rd | 6 matrixStats-0.50.0/matrixStats/man/meanOver.Rd | 4 matrixStats-0.50.0/matrixStats/man/rowAvgsPerColSet.Rd | 5 matrixStats-0.50.0/matrixStats/man/rowCollapse.Rd | 8 matrixStats-0.50.0/matrixStats/man/rowCounts.Rd | 18 matrixStats-0.50.0/matrixStats/man/rowCumsums.Rd | 18 matrixStats-0.50.0/matrixStats/man/rowDiffs.Rd | 6 matrixStats-0.50.0/matrixStats/man/rowIQRs.Rd | 8 matrixStats-0.50.0/matrixStats/man/rowLogSumExps.Rd | 6 matrixStats-0.50.0/matrixStats/man/rowMedians.Rd | 6 matrixStats-0.50.0/matrixStats/man/rowOrderStats.Rd | 6 matrixStats-0.50.0/matrixStats/man/rowProds.Rd | 8 matrixStats-0.50.0/matrixStats/man/rowQuantiles.Rd | 10 matrixStats-0.50.0/matrixStats/man/rowRanges.Rd | 14 matrixStats-0.50.0/matrixStats/man/rowRanks.Rd | 7 matrixStats-0.50.0/matrixStats/man/rowSds.Rd | 12 matrixStats-0.50.0/matrixStats/man/rowTabulates.Rd | 6 matrixStats-0.50.0/matrixStats/man/rowVars.Rd | 10 matrixStats-0.50.0/matrixStats/man/rowWeightedMeans.Rd | 6 matrixStats-0.50.0/matrixStats/man/rowWeightedMedians.Rd | 6 matrixStats-0.50.0/matrixStats/man/signTabulate.Rd | 4 matrixStats-0.50.0/matrixStats/man/sumOver.Rd | 4 matrixStats-0.50.0/matrixStats/man/validateIndices.Rd |only matrixStats-0.50.0/matrixStats/man/varDiff.Rd | 26 matrixStats-0.50.0/matrixStats/man/weightedMad.Rd | 8 matrixStats-0.50.0/matrixStats/man/weightedMean.Rd | 4 matrixStats-0.50.0/matrixStats/man/weightedMedian.Rd | 5 matrixStats-0.50.0/matrixStats/man/weightedVar.Rd | 12 matrixStats-0.50.0/matrixStats/man/xUNDERSCOREOPUNDERSCOREy.Rd | 8 matrixStats-0.50.0/matrixStats/src/anyMissing.c | 89 -- matrixStats-0.50.0/matrixStats/src/anyMissing_TYPE-template.h |only matrixStats-0.50.0/matrixStats/src/colCounts.c | 53 - matrixStats-0.50.0/matrixStats/src/colCounts_TYPE-template.h | 86 +- matrixStats-0.50.0/matrixStats/src/colOrderStats.c | 46 - matrixStats-0.50.0/matrixStats/src/colOrderStats_TYPE-template.h | 57 - matrixStats-0.50.0/matrixStats/src/colRanges.c | 77 + matrixStats-0.50.0/matrixStats/src/colRanges_TYPE-template.h | 145 +-- matrixStats-0.50.0/matrixStats/src/diff2.c | 27 matrixStats-0.50.0/matrixStats/src/diff2_TYPE-template.h | 57 - matrixStats-0.50.0/matrixStats/src/logSumExp.c | 25 matrixStats-0.50.0/matrixStats/src/logSumExp_TYPE-template.h |only matrixStats-0.50.0/matrixStats/src/macros.h |only matrixStats-0.50.0/matrixStats/src/meanOver.c | 39 - matrixStats-0.50.0/matrixStats/src/meanOver_TYPE-template.h | 141 +-- matrixStats-0.50.0/matrixStats/src/productExpSumLog.c | 28 matrixStats-0.50.0/matrixStats/src/productExpSumLog_TYPE-template.h | 22 matrixStats-0.50.0/matrixStats/src/rowCounts.c | 40 - matrixStats-0.50.0/matrixStats/src/rowCounts_TYPE-template.h | 116 +- matrixStats-0.50.0/matrixStats/src/rowCumMinMaxs.c | 75 + matrixStats-0.50.0/matrixStats/src/rowCumMinMaxs_TYPE-template.h | 65 + matrixStats-0.50.0/matrixStats/src/rowCumprods.c | 34 matrixStats-0.50.0/matrixStats/src/rowCumprods_TYPE-template.h | 74 + matrixStats-0.50.0/matrixStats/src/rowCumsums.c | 32 matrixStats-0.50.0/matrixStats/src/rowCumsums_TYPE-template.h | 90 +- matrixStats-0.50.0/matrixStats/src/rowDiffs.c | 42 - matrixStats-0.50.0/matrixStats/src/rowDiffs_TYPE-template.h | 156 +++- matrixStats-0.50.0/matrixStats/src/rowLogSumExp.c | 58 - matrixStats-0.50.0/matrixStats/src/rowLogSumExp_TYPE-template.h |only matrixStats-0.50.0/matrixStats/src/rowMads.c | 44 - matrixStats-0.50.0/matrixStats/src/rowMads_TYPE-template.h | 64 - matrixStats-0.50.0/matrixStats/src/rowMedians.c | 48 - matrixStats-0.50.0/matrixStats/src/rowMedians_TYPE-template.h | 58 - matrixStats-0.50.0/matrixStats/src/rowOrderStats.c | 46 - matrixStats-0.50.0/matrixStats/src/rowOrderStats_TYPE-template.h | 70 + matrixStats-0.50.0/matrixStats/src/rowRanges.c | 75 + matrixStats-0.50.0/matrixStats/src/rowRanges_TYPE-template.h | 147 ++- matrixStats-0.50.0/matrixStats/src/rowRanksWithTies.c | 139 +-- matrixStats-0.50.0/matrixStats/src/rowRanksWithTies_TYPE_TIES-template.h | 102 +- matrixStats-0.50.0/matrixStats/src/rowVars.c | 38 matrixStats-0.50.0/matrixStats/src/rowVars_TYPE-template.h | 46 - matrixStats-0.50.0/matrixStats/src/signTabulate.c | 27 matrixStats-0.50.0/matrixStats/src/signTabulate_TYPE-template.h | 22 matrixStats-0.50.0/matrixStats/src/sumOver.c | 37 matrixStats-0.50.0/matrixStats/src/sumOver_TYPE-template.h | 76 - matrixStats-0.50.0/matrixStats/src/templates-gen-matrix-vector.h |only matrixStats-0.50.0/matrixStats/src/templates-gen-matrix.h |only matrixStats-0.50.0/matrixStats/src/templates-gen-vector.h |only matrixStats-0.50.0/matrixStats/src/templates-types.h | 346 +++++++- matrixStats-0.50.0/matrixStats/src/templates-types_undef.h | 25 matrixStats-0.50.0/matrixStats/src/types.h | 25 matrixStats-0.50.0/matrixStats/src/utils.h | 39 - matrixStats-0.50.0/matrixStats/src/validateIndices.c |only matrixStats-0.50.0/matrixStats/src/validateIndices_TYPE-template.h |only matrixStats-0.50.0/matrixStats/src/weightedMean.c | 25 matrixStats-0.50.0/matrixStats/src/weightedMean_TYPE-template.h | 32 matrixStats-0.50.0/matrixStats/src/weightedMedian.c | 25 matrixStats-0.50.0/matrixStats/src/weightedMedian_TYPE-template.h | 65 + matrixStats-0.50.0/matrixStats/src/x_OP_y.c | 138 ++- matrixStats-0.50.0/matrixStats/src/x_OP_y_TYPE-template.h | 305 ++++--- matrixStats-0.50.0/matrixStats/tests/anyMissing_subset.R |only matrixStats-0.50.0/matrixStats/tests/benchmark.R | 3 matrixStats-0.50.0/matrixStats/tests/binCounts_subset.R |only matrixStats-0.50.0/matrixStats/tests/binMeans,binCounts_subset.R |only matrixStats-0.50.0/matrixStats/tests/count_subset.R |only matrixStats-0.50.0/matrixStats/tests/diff2_subset.R |only matrixStats-0.50.0/matrixStats/tests/logSumExp_subset.R |only matrixStats-0.50.0/matrixStats/tests/meanOver_subset.R |only matrixStats-0.50.0/matrixStats/tests/product.R | 18 matrixStats-0.50.0/matrixStats/tests/product_subset.R |only matrixStats-0.50.0/matrixStats/tests/rowAllAnys.R | 8 matrixStats-0.50.0/matrixStats/tests/rowAllAnys_subset.R |only matrixStats-0.50.0/matrixStats/tests/rowAvgsPerColSet_subset.R |only matrixStats-0.50.0/matrixStats/tests/rowCollapse_subset.R |only matrixStats-0.50.0/matrixStats/tests/rowCounts_subset.R |only matrixStats-0.50.0/matrixStats/tests/rowCumMinMaxs.R | 20 matrixStats-0.50.0/matrixStats/tests/rowCumMinMaxs_subset.R |only matrixStats-0.50.0/matrixStats/tests/rowCumprods.R | 10 matrixStats-0.50.0/matrixStats/tests/rowCumprods_subset.R |only matrixStats-0.50.0/matrixStats/tests/rowCumsums.R | 10 matrixStats-0.50.0/matrixStats/tests/rowCumsums_subset.R |only matrixStats-0.50.0/matrixStats/tests/rowDiffs_subset.R |only matrixStats-0.50.0/matrixStats/tests/rowIQRs.R | 1 matrixStats-0.50.0/matrixStats/tests/rowIQRs_subset.R |only matrixStats-0.50.0/matrixStats/tests/rowLogSumExps_subset.R |only matrixStats-0.50.0/matrixStats/tests/rowMads.R | 12 matrixStats-0.50.0/matrixStats/tests/rowMads_subset.R |only matrixStats-0.50.0/matrixStats/tests/rowMedians.R | 3 matrixStats-0.50.0/matrixStats/tests/rowMedians_subset.R |only matrixStats-0.50.0/matrixStats/tests/rowOrderStats.R | 8 matrixStats-0.50.0/matrixStats/tests/rowOrderStats_subset.R |only matrixStats-0.50.0/matrixStats/tests/rowProds.R | 9 matrixStats-0.50.0/matrixStats/tests/rowProds_subset.R |only matrixStats-0.50.0/matrixStats/tests/rowQuantiles.R | 20 matrixStats-0.50.0/matrixStats/tests/rowQuantiles_subset.R |only matrixStats-0.50.0/matrixStats/tests/rowRanges.R | 4 matrixStats-0.50.0/matrixStats/tests/rowRanges_subset.R |only matrixStats-0.50.0/matrixStats/tests/rowRanks.R | 2 matrixStats-0.50.0/matrixStats/tests/rowRanks_subset.R |only matrixStats-0.50.0/matrixStats/tests/rowSds.R | 12 matrixStats-0.50.0/matrixStats/tests/rowSds_subset.R |only matrixStats-0.50.0/matrixStats/tests/rowTabulates_subset.R |only matrixStats-0.50.0/matrixStats/tests/rowVarDiffs_mad,iqr_subset.R |only matrixStats-0.50.0/matrixStats/tests/rowVarDiffs_var,sd_subset.R |only matrixStats-0.50.0/matrixStats/tests/rowVars.R | 12 matrixStats-0.50.0/matrixStats/tests/rowVars_subset.R |only matrixStats-0.50.0/matrixStats/tests/rowWeightedMeans.R | 11 matrixStats-0.50.0/matrixStats/tests/rowWeightedMeans_subset.R |only matrixStats-0.50.0/matrixStats/tests/rowWeightedMedians_subset.R |only matrixStats-0.50.0/matrixStats/tests/rowWeightedVars_subset.R |only matrixStats-0.50.0/matrixStats/tests/signTabulate_subset.R |only matrixStats-0.50.0/matrixStats/tests/sumOver.R | 2 matrixStats-0.50.0/matrixStats/tests/sumOver_subset.R |only matrixStats-0.50.0/matrixStats/tests/utils |only matrixStats-0.50.0/matrixStats/tests/validateIndices.R |only matrixStats-0.50.0/matrixStats/tests/varDiff_etal_subset.R |only matrixStats-0.50.0/matrixStats/tests/weightedMean_subset.R |only matrixStats-0.50.0/matrixStats/tests/weightedMedian_subset.R |only matrixStats-0.50.0/matrixStats/tests/weightedVar_etal_subset.R |only matrixStats-0.50.0/matrixStats/tests/x_OP_y_subset.R |only matrixStats-0.50.0/matrixStats/vignettes/matrixStats-methods.md.rsp | 2 237 files changed, 3312 insertions(+), 2071 deletions(-)
Title: Visualizing Association Rules and Frequent Itemsets
Description: Extends package arules with various visualization techniques for association rules and itemsets. The package also includes several interactive visualizations for rule exploration.
Author: Michael Hahsler and Sudheer Chelluboina
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between arulesViz versions 1.0-4 dated 2015-09-15 and 1.1-0 dated 2015-12-13
arulesViz-1.0-4/arulesViz/R/AAA_helpers.R |only arulesViz-1.0-4/arulesViz/R/abbreviate.R |only arulesViz-1.0-4/arulesViz/inst/n.html |only arulesViz-1.0-4/arulesViz/man/abbreviate.Rd |only arulesViz-1.1-0/arulesViz/DESCRIPTION | 16 arulesViz-1.1-0/arulesViz/MD5 | 49 - arulesViz-1.1-0/arulesViz/NAMESPACE | 31 - arulesViz-1.1-0/arulesViz/R/AAAhelpers.R |only arulesViz-1.1-0/arulesViz/R/AAAparameter.R |only arulesViz-1.1-0/arulesViz/R/doubledecker.R | 4 arulesViz-1.1-0/arulesViz/R/gPlots.R | 411 ++++++++-------- arulesViz-1.1-0/arulesViz/R/graph.R | 66 +- arulesViz-1.1-0/arulesViz/R/groupedmatrix.R | 24 arulesViz-1.1-0/arulesViz/R/iplot.R | 4 arulesViz-1.1-0/arulesViz/R/map.R | 3 arulesViz-1.1-0/arulesViz/R/matrix.R | 550 +++++++++++----------- arulesViz-1.1-0/arulesViz/R/paracoord.R | 440 ++++++++--------- arulesViz-1.1-0/arulesViz/R/plot.R | 2 arulesViz-1.1-0/arulesViz/R/save.R | 2 arulesViz-1.1-0/arulesViz/R/scatterplot.R | 521 ++++++++++---------- arulesViz-1.1-0/arulesViz/README.md |only arulesViz-1.1-0/arulesViz/build/vignette.rds |binary arulesViz-1.1-0/arulesViz/inst/NEWS | 8 arulesViz-1.1-0/arulesViz/inst/doc/arulesViz.R | 21 arulesViz-1.1-0/arulesViz/inst/doc/arulesViz.Rnw | 3 arulesViz-1.1-0/arulesViz/inst/doc/arulesViz.pdf |binary arulesViz-1.1-0/arulesViz/man/plot.Rd | 5 arulesViz-1.1-0/arulesViz/man/save.Rd | 2 arulesViz-1.1-0/arulesViz/vignettes/arulesViz.Rnw | 3 29 files changed, 1107 insertions(+), 1058 deletions(-)
Title: An R Interface to SOLAR
Description: SOLAR is the standard software program to perform linkage and
association mappings of the quantitative trait loci (QTLs) in pedigrees of
arbitrary size and complexity. This package allows the user to exploit the
variance component methods implemented in SOLAR. It automates such routine
operations as formatting pedigree and phenotype data. It also parses the model
output and contains summary and plotting functions for exploration of the
results. In addition, solarius enables parallel computing of the linkage and
association analyses, that makes the calculation of genome-wide scans more
efficient. See <http://solar.txbiomedgenetics.org/> for more information about
SOLAR.
Author: Andrey Ziyatdinov [cre, aut],
Helena Brunel [aut],
Angel Martinez-Perez [aut],
Alfonso Buil [aut],
Alexandre Perera [cph],
Jose Manuel Soria [cph]
Maintainer: Andrey Ziyatdinov <andrey.ziyatdinov@upc.edu>
Diff between solarius versions 0.2.3 dated 2015-05-09 and 0.3.0.2 dated 2015-12-13
solarius-0.2.3/solarius/man/solariusPackage.Rd |only solarius-0.3.0.2/solarius/DESCRIPTION | 42 +- solarius-0.3.0.2/solarius/MD5 | 128 ++++-- solarius-0.3.0.2/solarius/NAMESPACE | 44 ++ solarius-0.3.0.2/solarius/NEWS | 24 + solarius-0.3.0.2/solarius/R/assoc.lib.R | 94 ++++- solarius-0.3.0.2/solarius/R/classSolarAssoc.R | 53 ++ solarius-0.3.0.2/solarius/R/classSolarMultipoint.R | 89 ++++ solarius-0.3.0.2/solarius/R/data.lib.R | 2 solarius-0.3.0.2/solarius/R/datasets.R | 20 - solarius-0.3.0.2/solarius/R/files.lib.R | 126 +++++- solarius-0.3.0.2/solarius/R/modelPar.R |only solarius-0.3.0.2/solarius/R/multipoint.lib.R | 112 ++++++ solarius-0.3.0.2/solarius/R/package.R | 4 solarius-0.3.0.2/solarius/R/plot.lib.R | 20 + solarius-0.3.0.2/solarius/R/solar.lib.R | 4 solarius-0.3.0.2/solarius/R/solarAssoc.R | 184 ++++++++-- solarius-0.3.0.2/solarius/R/solarBayesAvg.R |only solarius-0.3.0.2/solarius/R/solarMultipoint.R | 10 solarius-0.3.0.2/solarius/R/solarMultivar.R |only solarius-0.3.0.2/solarius/R/solarPar.R |only solarius-0.3.0.2/solarius/R/solarPolyAssoc.R |only solarius-0.3.0.2/solarius/R/support.lib.R | 28 + solarius-0.3.0.2/solarius/R/transforms.lib.R | 38 +- solarius-0.3.0.2/solarius/README.md | 7 solarius-0.3.0.2/solarius/TODO | 16 solarius-0.3.0.2/solarius/inst/examples/function-solarBayesAvg.R |only solarius-0.3.0.2/solarius/inst/examples/function-solarMultivar.R |only solarius-0.3.0.2/solarius/inst/examples/solar-multipoint-gait1.R |only solarius-0.3.0.2/solarius/inst/extdata/solarAssoc/plink/dat50.ped | 132 +++---- solarius-0.3.0.2/solarius/inst/extdata/solarAssoc/plink/dat50.raw |only solarius-0.3.0.2/solarius/inst/extdata/solarAssoc/plink/dat50.tfam |only solarius-0.3.0.2/solarius/inst/extdata/solarAssoc/plink/dat50.tped |only solarius-0.3.0.2/solarius/inst/extdata/solarAssoc/snp.geno-list |only solarius-0.3.0.2/solarius/inst/tests/test-annotate.R |only solarius-0.3.0.2/solarius/inst/tests/test-kinship.R | 23 - solarius-0.3.0.2/solarius/inst/tests/test-mgafiles.R |only solarius-0.3.0.2/solarius/inst/tests/test-not-passed.R |only solarius-0.3.0.2/solarius/inst/tests/test-plinkfiles.R |only solarius-0.3.0.2/solarius/inst/tests/test-solarAssoc-parallel.R |only solarius-0.3.0.2/solarius/inst/tests/test-solarAssoc.R | 14 solarius-0.3.0.2/solarius/inst/tests/test-solarPar.R |only solarius-0.3.0.2/solarius/man/annotate.Rd | 16 solarius-0.3.0.2/solarius/man/annotateSNPs.Rd | 14 solarius-0.3.0.2/solarius/man/availableTransforms.Rd | 2 solarius-0.3.0.2/solarius/man/dat30.Rd | 13 solarius-0.3.0.2/solarius/man/dat50.Rd | 17 solarius-0.3.0.2/solarius/man/df2solar.Rd | 2 solarius-0.3.0.2/solarius/man/explainedVarProp.Rd |only solarius-0.3.0.2/solarius/man/getFormulaStr.Rd | 2 solarius-0.3.0.2/solarius/man/loadExamplesPhen.Rd | 2 solarius-0.3.0.2/solarius/man/loadMulticPhen.Rd | 2 solarius-0.3.0.2/solarius/man/matchIdNames.Rd | 2 solarius-0.3.0.2/solarius/man/matchMapNames.Rd | 2 solarius-0.3.0.2/solarius/man/modelPar.Rd |only solarius-0.3.0.2/solarius/man/package.file.Rd | 4 solarius-0.3.0.2/solarius/man/plotKinship2.Rd | 2 solarius-0.3.0.2/solarius/man/plotPed.Rd | 2 solarius-0.3.0.2/solarius/man/plotQQManh.Rd | 2 solarius-0.3.0.2/solarius/man/plotRes.Rd | 2 solarius-0.3.0.2/solarius/man/readPhen.Rd | 2 solarius-0.3.0.2/solarius/man/snp2solar.Rd | 2 solarius-0.3.0.2/solarius/man/solar.Rd | 2 solarius-0.3.0.2/solarius/man/solarAssoc.Rd | 37 +- solarius-0.3.0.2/solarius/man/solarAssocClass.Rd | 2 solarius-0.3.0.2/solarius/man/solarBaeysAvgPolygenicClass.Rd |only solarius-0.3.0.2/solarius/man/solarKinship2.Rd | 2 solarius-0.3.0.2/solarius/man/solarMultipoint.Rd | 8 solarius-0.3.0.2/solarius/man/solarMultipointClass.Rd | 22 + solarius-0.3.0.2/solarius/man/solarMultivarClass.Rd |only solarius-0.3.0.2/solarius/man/solarPar.Rd |only solarius-0.3.0.2/solarius/man/solarPolyAssoc.Rd |only solarius-0.3.0.2/solarius/man/solarPolygenic.Rd | 2 solarius-0.3.0.2/solarius/man/solarPolygenicClass.Rd | 2 solarius-0.3.0.2/solarius/man/solarReadFiles.Rd | 2 solarius-0.3.0.2/solarius/man/tabplot.Rd |only solarius-0.3.0.2/solarius/man/transformData.Rd | 2 solarius-0.3.0.2/solarius/man/transformTrait.Rd | 7 78 files changed, 1057 insertions(+), 335 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad
Sanderson) that aims towards a good balance between speed and ease of use. Integer,
floating point and complex numbers are supported, as well as a subset of
trigonometric and statistics functions. Various matrix decompositions are
provided through optional integration with LAPACK and ATLAS libraries.
The 'RcppArmadillo' package includes the header files from the templated
'Armadillo' library. Thus users do not need to install 'Armadillo' itself in
order to use 'RcppArmadillo'. 'Armadillo' is licensed under the MPL 2.0, while
'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the
GNU GPL version 2 or later, as is the rest of 'Rcpp'.
Author: Dirk Eddelbuettel, Romain Francois and Doug Bates
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 0.6.300.2.0 dated 2015-12-03 and 0.6.300.2.2 dated 2015-12-13
ChangeLog | 22 ++++++++++++++++ DESCRIPTION | 8 ++--- MD5 | 24 ++++++++--------- build/vignette.rds |binary configure | 22 ++++++++-------- inst/NEWS.Rd | 11 ++++++++ inst/doc/RcppArmadillo-intro.pdf |binary inst/doc/RcppArmadillo-unitTests.pdf |binary inst/include/RcppArmadilloConfig.h | 2 - inst/include/RcppArmadilloLapack.h.in | 4 +- inst/include/armadillo_bits/arma_version.hpp | 2 - inst/include/armadillo_bits/auxlib_meat.hpp | 35 ++++++++++++++++++++------ inst/include/armadillo_bits/gmm_diag_meat.hpp | 27 ++++++++++++++++---- 13 files changed, 113 insertions(+), 44 deletions(-)
Title: CITation ANalysis Toolpack
Description: Supports quantitative
research in scientometrics and bibliometrics. Provides
various tools for preprocessing bibliographic
data retrieved, e.g., from Elsevier's SciVerse Scopus,
computing bibliometric impact of individuals,
or modeling many phenomena encountered in the social sciences.
Author: Marek Gagolewski [aut, cre]
Maintainer: Marek Gagolewski <gagolews@ibspan.waw.pl>
Diff between CITAN versions 2014.12-1 dated 2014-12-06 and 2015.12-2 dated 2015-12-13
CITAN-2014.12-1/CITAN/data |only CITAN-2015.12-2/CITAN/CHANGELOG | 3 CITAN-2015.12-2/CITAN/DESCRIPTION | 20 +- CITAN-2015.12-2/CITAN/MD5 | 106 ++++++-------- CITAN-2015.12-2/CITAN/NAMESPACE | 16 +- CITAN-2015.12-2/CITAN/R/CITAN-package.R | 23 ++- CITAN-2015.12-2/CITAN/R/biblio.assess.R | 6 CITAN-2015.12-2/CITAN/R/biblio.clear.R | 27 ++- CITAN-2015.12-2/CITAN/R/biblio.connect.R | 19 +- CITAN-2015.12-2/CITAN/R/biblio.create.R | 13 + CITAN-2015.12-2/CITAN/R/biblio.duplicates.authors.R | 24 ++- CITAN-2015.12-2/CITAN/R/biblio.duplicates.documents.R | 11 + CITAN-2015.12-2/CITAN/R/biblio.getcitations.R | 10 - CITAN-2015.12-2/CITAN/R/biblio.import.R | 20 +- CITAN-2015.12-2/CITAN/R/biblio.info.R | 8 - CITAN-2015.12-2/CITAN/R/biblio.internal.R | 2 CITAN-2015.12-2/CITAN/R/biblio.search.R | 6 CITAN-2015.12-2/CITAN/R/biblio.stats.R | 8 - CITAN-2015.12-2/CITAN/R/biblio.tidy.R | 8 - CITAN-2015.12-2/CITAN/R/execquery.R | 2 CITAN-2015.12-2/CITAN/R/rgtk2.R | 2 CITAN-2015.12-2/CITAN/R/scopus.data.R | 6 CITAN-2015.12-2/CITAN/R/scopus.importsources.R | 6 CITAN-2015.12-2/CITAN/R/scopus.readcsv.R | 4 CITAN-2015.12-2/CITAN/R/string.R | 4 CITAN-2015.12-2/CITAN/R/sysdata.rda |only CITAN-2015.12-2/CITAN/man/CITAN-package.Rd | 14 - CITAN-2015.12-2/CITAN/man/Scopus_ASJC.Rd | 6 CITAN-2015.12-2/CITAN/man/Scopus_ImportSources.Rd | 3 CITAN-2015.12-2/CITAN/man/Scopus_ReadCSV.Rd | 5 CITAN-2015.12-2/CITAN/man/Scopus_SourceList.Rd | 6 CITAN-2015.12-2/CITAN/man/as.character.authorinfo.Rd | 3 CITAN-2015.12-2/CITAN/man/as.character.docinfo.Rd | 3 CITAN-2015.12-2/CITAN/man/dbExecQuery.Rd | 3 CITAN-2015.12-2/CITAN/man/lbsAssess.Rd | 3 CITAN-2015.12-2/CITAN/man/lbsClear.Rd | 4 CITAN-2015.12-2/CITAN/man/lbsConnect.Rd | 10 - CITAN-2015.12-2/CITAN/man/lbsCreate.Rd | 18 +- CITAN-2015.12-2/CITAN/man/lbsDeleteAllAuthorsDocuments.Rd | 15 + CITAN-2015.12-2/CITAN/man/lbsDeleteDocuments.Rd | 6 CITAN-2015.12-2/CITAN/man/lbsDescriptiveStats.Rd | 9 - CITAN-2015.12-2/CITAN/man/lbsDisconnect.Rd | 3 CITAN-2015.12-2/CITAN/man/lbsFindDuplicateAuthors.Rd | 7 CITAN-2015.12-2/CITAN/man/lbsFindDuplicateTitles.Rd | 8 - CITAN-2015.12-2/CITAN/man/lbsGetCitations.Rd | 6 CITAN-2015.12-2/CITAN/man/lbsGetInfoAuthors.Rd | 5 CITAN-2015.12-2/CITAN/man/lbsGetInfoDocuments.Rd | 3 CITAN-2015.12-2/CITAN/man/lbsImportDocuments.Rd | 3 CITAN-2015.12-2/CITAN/man/lbsMergeAuthors.Rd | 7 CITAN-2015.12-2/CITAN/man/lbsSearchAuthors.Rd | 3 CITAN-2015.12-2/CITAN/man/lbsSearchDocuments.Rd | 3 CITAN-2015.12-2/CITAN/man/lbsTidy.Rd | 3 CITAN-2015.12-2/CITAN/man/print.authorinfo.Rd | 3 CITAN-2015.12-2/CITAN/man/print.docinfo.Rd | 3 54 files changed, 319 insertions(+), 200 deletions(-)
Title: Embeddable Cairo Graphics Device Driver
Description: This device uses Cairo and GTK to draw to the screen,
file (png, svg, pdf, and ps) or memory (arbitrary GdkDrawable
or Cairo context). The screen device may be embedded into RGtk2
interfaces and supports all interactive features of other graphics
devices, including getGraphicsEvent().
Author: Michael Lawrence
Maintainer: Michael Lawrence <michafla@gene.com>
Diff between cairoDevice versions 2.22 dated 2015-02-24 and 2.23 dated 2015-12-13
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/zzz.R | 9 +++++---- src/cairoDevice.c | 15 ++++++++++++--- 4 files changed, 24 insertions(+), 14 deletions(-)