Title: 'TSdbi' Extension to Connect with 'SDMX'
Description: Methods to
retrieve data in the Statistical Data and Metadata Exchange ('SDMX') format
from several database. (For example,
EuroStat, the European Central Bank, the Organisation for Economic
Co-operation and Development, the Unesco Institute for Statistics,
and the International Labor Organization.)
This is a wrapper for package 'RJSDMX'.
Comprehensive examples of all the 'TS*' packages is provided in the
vignette Guide.pdf with the 'TSdata' package.
Author: Paul Gilbert <pgilbert.ttv9z@ncf.ca>
Maintainer: Paul Gilbert <pgilbert.ttv9z@ncf.ca>
Diff between TSsdmx versions 2015.2-2 dated 2015-04-30 and 2015.12-1 dated 2015-12-16
DESCRIPTION | 6 +- MD5 | 22 ++++----- NEWS | 8 +++ R/TSdbiMethods.R | 9 ++- inst/testWithInternet/0serviceCheck.R | 12 ++++- inst/testWithInternet/0serviceCheck_EuroStat.R | 3 - inst/testWithInternet/0serviceCheck_ILO.R | 11 +++- inst/testWithInternet/0serviceCheck_IMF.R | 3 - inst/testWithInternet/0serviceCheck_INEGI.R | 3 - inst/testWithInternet/0serviceCheck_OECD.R | 60 ++++++++++++++++++++++--- inst/testWithInternet/ilo.R | 15 +++++- inst/testWithInternet/oecd.R | 22 +++++++-- 12 files changed, 136 insertions(+), 38 deletions(-)
Title: Time Series Database Interface
Description: Provides a common interface to time series databases. The
objective is to define a standard interface so users can retrieve time
series data from various sources with a simple, common, set of
commands, and so programs can be written to be portable with respect
to the data source. The SQL implementations also provide a database
table design, so users needing to set up a time series database
have a reasonably complete way to do this easily. The interface
provides for a variety of options with respect to the representation
of time series in R. The interface, and the SQL implementations, also
handle vintages of time series data (sometime called editions or
realtime data). There is also a (not yet well tested) mechanism to
handle multilingual data documentation.
Comprehensive examples of all the TS* packages is provided in the
vignette Guide.pdf with the TSdata package.
Author: Paul Gilbert <pgilbert.ttv9z@ncf.ca>
Maintainer: Paul Gilbert <pgilbert.ttv9z@ncf.ca>
Diff between TSdbi versions 2015.1-1 dated 2015-04-29 and 2015.7-1 dated 2015-12-16
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS | 5 +++++ R/TSdbi.R | 6 +++--- 4 files changed, 14 insertions(+), 9 deletions(-)
Title: Functions for Hierarchical Bayesian Estimation: A Flexible
Approach
Description: Functions for estimating models using a Hierarchical Bayesian (HB) framework. The flexibility comes in allowing the user to specify the likelihood function directly instead of assuming predetermined model structures. Types of models that can be estimated with this code include the family of discrete choice models (Multinomial Logit, Mixed Logit, Nested Logit, Error Components Logit and Latent Class) as well ordered response models like ordered probit and ordered logit. In addition, the package allows for flexibility in specifying parameters as either fixed (non-varying across individuals) or random with continuous distributions. Parameter distributions supported include normal, positive/negative log-normal, positive/negative censored normal, and the Johnson SB distribution. Kenneth Train's Matlab and Gauss code for doing Hierarchical Bayesian estimation has served as the basis for a few of the functions included in this package. These Matlab/Gauss functions have been rewritten to be optimized within R. Considerable code has been added to increase the flexibility and usability of the code base. Train's original Gauss and Matlab code can be found here: http://elsa.berkeley.edu/Software/abstracts/train1006mxlhb.html See Train's chapter on HB in Discrete Choice with Simulation here: http://elsa.berkeley.edu/books/choice2.html; and his paper on using HB with non-normal distributions here: http://eml.berkeley.edu//~train/trainsonnier.pdf.
Author: Jeff Dumont [aut, cre],
Jeff Keller [aut],
Chase Carpenter [ctb]
Maintainer: Jeff Dumont <Jeff.Dumont@rsginc.com>
Diff between RSGHB versions 1.1.1 dated 2015-07-16 and 1.1.2 dated 2015-12-16
RSGHB-1.1.1/RSGHB/R/vech.R |only RSGHB-1.1.1/RSGHB/R/xpnd.R |only RSGHB-1.1.2/RSGHB/DESCRIPTION | 10 +++++----- RSGHB-1.1.2/RSGHB/MD5 | 12 +++++------- RSGHB-1.1.2/RSGHB/NEWS | 5 ++++- RSGHB-1.1.2/RSGHB/R/writeModel.R | 12 ++++-------- RSGHB-1.1.2/RSGHB/build/vignette.rds |binary RSGHB-1.1.2/RSGHB/inst/doc/RSGHB_HowTo.pdf |binary 8 files changed, 18 insertions(+), 21 deletions(-)
Title: Unified Handling of Graphics Devices
Description: Functions for creating plots and image files in a unified way regardless of output format (EPS, PDF, PNG, SVG, TIFF, WMF, etc.). Default device options as well as scales and aspect ratios are controlled in a uniform way across all device types. Switching output format requires minimal changes in code. This package is ideal for large-scale batch processing, because it will never leave open graphics devices or incomplete image files behind, even on errors or user interrupts.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between R.devices versions 2.13.1 dated 2015-09-22 and 2.13.2 dated 2015-12-16
R.devices-2.13.1/R.devices/tests/devIndexOf.R |only R.devices-2.13.2/R.devices/DESCRIPTION | 12 - R.devices-2.13.2/R.devices/MD5 | 45 ++--- R.devices-2.13.2/R.devices/NAMESPACE | 1 R.devices-2.13.2/R.devices/NEWS | 9 + R.devices-2.13.2/R.devices/R/capabilitiesX11.R | 108 ++++++------- R.devices-2.13.2/R.devices/R/devNew.R | 2 R.devices-2.13.2/R.devices/R/devOptions.R | 15 + R.devices-2.13.2/R.devices/R/deviceUtils.R | 47 +++-- R.devices-2.13.2/R.devices/build/vignette.rds |binary R.devices-2.13.2/R.devices/inst/doc/R.devices-overview.pdf |binary R.devices-2.13.2/R.devices/man/R.devices-package.Rd | 2 R.devices-2.13.2/R.devices/tests/DevEvalFileProduct.R | 42 ++++- R.devices-2.13.2/R.devices/tests/DevEvalProduct.R | 30 +++ R.devices-2.13.2/R.devices/tests/capabilitiesX11.R | 24 +- R.devices-2.13.2/R.devices/tests/devAll.R | 3 R.devices-2.13.2/R.devices/tests/devEqualTypes.R |only R.devices-2.13.2/R.devices/tests/devEval.R | 14 - R.devices-2.13.2/R.devices/tests/devIsInteractive.R | 4 R.devices-2.13.2/R.devices/tests/devList.R | 25 ++- R.devices-2.13.2/R.devices/tests/devListIndexOf.R |only R.devices-2.13.2/R.devices/tests/devNew.R |only R.devices-2.13.2/R.devices/tests/devOptions.R | 72 ++++++++ R.devices-2.13.2/R.devices/tests/devSet.R | 19 ++ R.devices-2.13.2/R.devices/tests/favicon.R | 50 ++++-- R.devices-2.13.2/R.devices/tests/toNNN.R |only 26 files changed, 380 insertions(+), 144 deletions(-)
Title: Time Frame Coding Kernel
Description: A kernel of functions for programming
time series methods in a way that is relatively independently of the
representation of time. Also provides plotting, time windowing,
and some
other utility functions which are specifically intended for time series.
See the Guide distributed as a vignette, or ?tframe.Intro for more
details. (User utilities are in package tfplot.)
Author: Paul Gilbert <pgilbert.ttv9z@ncf.ca>
Maintainer: Paul Gilbert <pgilbert.ttv9z@ncf.ca>
Diff between tframe versions 2015.1-1 dated 2015-01-05 and 2015.12-1 dated 2015-12-16
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NAMESPACE | 7 ++----- NEWS | 9 +++++++++ R/Rts.R | 2 +- build/vignette.rds |binary 6 files changed, 20 insertions(+), 14 deletions(-)
Title: Time Frame User Utilities
Description: Utilities for simple manipulation and quick
plotting of time series data. These utilities use the tframe package
which provides a programming kernel for time series. Extensions to
tframe provided in tframePlus can also be used. See the Guide vignette
for examples.
Author: Paul Gilbert <pgilbert.ttv9z@ncf.ca>
Maintainer: Paul Gilbert <pgilbert.ttv9z@ncf.ca>
Diff between tfplot versions 2015.4-1 dated 2015-04-28 and 2015.12-1 dated 2015-12-16
DESCRIPTION | 7 ++++--- MD5 | 10 +++++----- NAMESPACE | 4 ++++ NEWS | 11 +++++++++++ R/tfplot.R | 3 ++- man/tfVisPlot.Rd | 3 ++- 6 files changed, 28 insertions(+), 10 deletions(-)
Title: Just Let it Simmer
Description: Discrete-Event Simulation (DES) package for R.
Author: Bart Smeets [aut],
Iñaki Ucar [aut, cre]
Maintainer: Iñaki Ucar <i.ucar86@gmail.com>
Diff between simmer versions 3.1.0 dated 2015-12-15 and 3.1.1 dated 2015-12-16
DESCRIPTION | 6 ++-- MD5 | 22 +++++++++--------- R/utils.R | 4 +++ inst/doc/introduction.html | 55 ++++++++++++++++++++++----------------------- inst/doc/terminology.html | 4 +-- inst/doc/trajectories.html | 16 ++++++------- src/activity.cpp | 4 +-- src/activity.h | 4 +-- src/entity.cpp | 2 - src/entity.h | 12 +++++---- src/simulator.h | 7 ++++- tests/testthat/test-wrap.R | 10 ++++---- 12 files changed, 79 insertions(+), 67 deletions(-)
Title: Dynamic Systems Estimation (Time Series Package)
Description: Tools for multivariate, linear, time-invariant,
time series models. This includes ARMA and state-space representations,
and methods for converting between them. It also includes simulation
methods and several estimation functions. The package has functions
for looking at model roots, stability, and forecasts at different
horizons. The ARMA model representation is general, so that VAR, VARX,
ARIMA, ARMAX, ARIMAX can all be considered to be special cases. Kalman
filter and smoother estimates can be obtained from the state space
model, and state-space model reduction techniques are implemented.
An introduction and User's Guide is available in a vignette.
Author: Paul Gilbert <pgilbert.ttv9z@ncf.ca>
Maintainer: Paul Gilbert <pgilbert.ttv9z@ncf.ca>
Diff between dse versions 2014.11-1 dated 2014-11-25 and 2015.12-1 dated 2015-12-16
DESCRIPTION | 15 ++++++++------- MD5 | 24 ++++++++++++------------ NAMESPACE | 12 ++++-------- NEWS | 6 ++++++ R/dse1.R | 16 +++++++++++----- build/vignette.rds |binary data/eg1.DSE.data.diff.rda |binary data/eg1.DSE.data.rda |binary data/egJofF.1dec93.data.rda |binary inst/CITATION | 4 ++-- inst/doc/Guide.pdf |binary man/balanceMittnik.Rd | 2 +- man/estSSMittnik.Rd | 2 +- 13 files changed, 45 insertions(+), 36 deletions(-)
Title: Count All Common Subsequences
Description: Count all common subsequences between 2 string sequences, with
items separated by the same delimiter. The first string input is a length-
one vector, the second string input can be a vector or list containing
multiple strings. The algorithm differentiates between the more strict
definition of subsequence, where a common subsequence cannot be separated
by any other items, from its looser counterpart, where a common subsequence
can be interrupted by other items. For example, q-w is a common subsequence
of q-w-e-r and q-e-w-r on the looser definition, but not the more strict
definition. calACSLoose Algorithm from Wang, H. All common subsequences
(2007) IJCAI International Joint Conference on Artificial Intelligence, pp. 635-640.
Author: Alan Gu
Maintainer: Alan Gu <alan.on.ca@gmail.com>
Diff between calACS versions 1.1 dated 2015-12-16 and 1.2 dated 2015-12-16
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/calACSstr.R | 10 +++++----- R/calACSstrLoose.r | 11 ++++++----- 4 files changed, 18 insertions(+), 17 deletions(-)
Title: Response Probability Functions
Description: The purpose of this package is to factor out logic and math common
to Item Factor Analysis fitting, diagnostics, and analysis. It is
envisioned as core support code suitable for more specialized IRT packages
to build upon. Complete access to optimized C functions are made available
with R_RegisterCCallable.
Author: Joshua Pritikin [cre, aut],
Jonathan Weeks [ctb],
Li Cai [ctb],
Carrie Houts [ctb],
Phil Chalmers [ctb],
Michael D. Hunter [ctb],
Carl F. Falk [ctb]
Maintainer: Joshua Pritikin <jpritikin@pobox.com>
Diff between rpf versions 0.49 dated 2015-11-19 and 0.51 dated 2015-12-16
DESCRIPTION | 18 + MD5 | 22 +- R/classes.R | 30 +- R/lmp.R |only build/vignette.rds |binary inst/doc/customitem.R |only inst/doc/customitem.Rmd |only inst/doc/customitem.html |only inst/doc/diagnostics.html | 42 ++-- inst/tests/test-dTheta.R | 8 inst/tests/test-lmp-icc.R |only man/rpf.1dim.lmp-class.Rd |only man/rpf.lmp.Rd |only man/rpf.rparam.Rd | 1 src/libifa-rpf.cpp | 476 +++++++++++++++++++++++++++++++++++++++++++++- vignettes/customitem.Rmd |only 16 files changed, 542 insertions(+), 55 deletions(-)
Title: Build Regular Expressions in a Human Readable Way
Description: Build regular expressions piece by piece using human readable code.
This package is designed for interactive use. For package development, use
the rebus.* dependencies.
Author: Richard Cotton [aut, cre]
Maintainer: Richard Cotton <richierocks@gmail.com>
Diff between rebus versions 0.0-5 dated 2015-02-04 and 0.1-0 dated 2015-12-16
rebus-0.0-5/rebus/R/alternation.R |only rebus-0.0-5/rebus/R/backreferences.R |only rebus-0.0-5/rebus/R/capture.R |only rebus-0.0-5/rebus/R/class-groups.R |only rebus-0.0-5/rebus/R/compound-constants.R |only rebus-0.0-5/rebus/R/concatenation.R |only rebus-0.0-5/rebus/R/constants.R |only rebus-0.0-5/rebus/R/datetime.R |only rebus-0.0-5/rebus/R/escape_special.R |only rebus-0.0-5/rebus/R/grouping-and-repetition.R |only rebus-0.0-5/rebus/R/internal.R |only rebus-0.0-5/rebus/R/lookaround.R |only rebus-0.0-5/rebus/R/misc.R |only rebus-0.0-5/rebus/R/number_range.R |only rebus-0.0-5/rebus/R/regex-methods.R |only rebus-0.0-5/rebus/R/unicode-groups.R |only rebus-0.0-5/rebus/R/unicode.R |only rebus-0.0-5/rebus/R/zzz.R |only rebus-0.0-5/rebus/inst |only rebus-0.0-5/rebus/man/recycle.Rd |only rebus-0.0-5/rebus/man/repeat_in_class.Rd |only rebus-0.0-5/rebus/tests |only rebus-0.1-0/rebus/DESCRIPTION | 20 rebus-0.1-0/rebus/MD5 | 86 -- rebus-0.1-0/rebus/NAMESPACE | 55 + rebus-0.1-0/rebus/R/export-base.R |only rebus-0.1-0/rebus/R/export-datetimes.R |only rebus-0.1-0/rebus/R/export-numbers.R |only rebus-0.1-0/rebus/R/export-unicode.R |only rebus-0.1-0/rebus/R/imports.R |only rebus-0.1-0/rebus/R/regex-package.R | 8 rebus-0.1-0/rebus/README.md | 62 - rebus-0.1-0/rebus/man/Anchors.Rd | 27 rebus-0.1-0/rebus/man/Backreferences.Rd | 47 - rebus-0.1-0/rebus/man/CharacterClasses.Rd | 97 -- rebus-0.1-0/rebus/man/ClassGroups.Rd | 146 --- rebus-0.1-0/rebus/man/Concatenation.Rd | 31 rebus-0.1-0/rebus/man/DateTime.Rd | 189 ---- rebus-0.1-0/rebus/man/IsoClasses.Rd |only rebus-0.1-0/rebus/man/SpecialCharacters.Rd | 55 - rebus-0.1-0/rebus/man/Unicode.Rd | 1081 -------------------------- rebus-0.1-0/rebus/man/WordBoundaries.Rd | 25 rebus-0.1-0/rebus/man/as.regex.Rd | 36 rebus-0.1-0/rebus/man/capture.Rd | 29 rebus-0.1-0/rebus/man/char_class.Rd | 29 rebus-0.1-0/rebus/man/escape_special.Rd | 32 rebus-0.1-0/rebus/man/exactly.Rd | 19 rebus-0.1-0/rebus/man/format.regex.Rd | 24 rebus-0.1-0/rebus/man/get_weekdays.Rd | 50 - rebus-0.1-0/rebus/man/literal.Rd | 20 rebus-0.1-0/rebus/man/lookahead.Rd | 31 rebus-0.1-0/rebus/man/modify_mode.Rd |only rebus-0.1-0/rebus/man/number_range.Rd | 37 rebus-0.1-0/rebus/man/or.Rd | 52 - rebus-0.1-0/rebus/man/rebus.Rd |only rebus-0.1-0/rebus/man/recursive.Rd | 21 rebus-0.1-0/rebus/man/regex.Rd | 113 -- rebus-0.1-0/rebus/man/repeated.Rd | 45 - rebus-0.1-0/rebus/man/roman.Rd |only 59 files changed, 243 insertions(+), 2224 deletions(-)
Title: Probabilistic Latent Feature Analysis
Description: Functions for estimating probabilistic latent feature models with a disjunctive or a conjunctive mapping rule on (aggregated) binary three-way data.
Author: Michel Meulders [aut, cre], Philippe De Bruecker [ctb]
Maintainer: Michel Meulders <michel.meulders@kuleuven.be>
Diff between plfm versions 1.1.2 dated 2014-12-28 and 2.1 dated 2015-12-16
DESCRIPTION | 20 MD5 | 37 NAMESPACE | 16 R/plfm.R | 2633 +++++++++++++++++++++++++++++++++++++++- data/anger2.rda |only data/car.rda |binary data/car2.rda |only data/hostility.rda |only man/LCplfm.Rd |only man/anger2.Rd |only man/bayesplfm.Rd | 4 man/car.Rd | 8 man/car2.Rd |only man/gendatLCplfm.Rd |only man/hostility.Rd |only man/plfm-package.Rd | 33 man/plfm.Rd | 55 man/plot.LCplfm.Rd |only man/plot.plfm.Rd |only man/plot.stepLCplfm.Rd |only man/plot.stepplfm.Rd | 3 man/print.LCplfm.Rd |only man/print.stepLCplfm.Rd |only man/print.summary.stepLCplfm.Rd |only man/stepLCplfm.Rd |only man/stepplfm.Rd | 35 man/summary.stepLCplfm.Rd |only src |only 28 files changed, 2738 insertions(+), 106 deletions(-)
Title: Programming with Big Data -- Interface to ZeroMQ
Description: 'ZeroMQ' is a well-known library for high-performance
asynchronous messaging in scalable, distributed applications. This
package provides high level R wrapper functions to easily utilize
'ZeroMQ'. We mainly focus on interactive client/server programming
frameworks. For convenience, a minimal 'ZeroMQ' library (4.1.0 rc1)
is shipped with 'pbdZMQ', which can be used if no system installation
of 'ZeroMQ' is available. A few wrapper functions compatible with
'rzmq' are also provided.
Author: Wei-Chen Chen [aut, cre],
Drew Schmidt [aut],
Christian Heckendorf [aut] (file transfer),
George Ostrouchov [aut] (Mac OSX),
Whit Armstrong [ctb] (some functions are modified from the rzmq package
for backwards compatibility),
Brian Ripley [ctb] (C code of shellexec, and Solaris),
R Core team [ctb] (some functions are modified from the R source code)
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between pbdZMQ versions 0.1-1 dated 2015-09-23 and 0.2-0 dated 2015-12-16
pbdZMQ-0.1-1/pbdZMQ/R/111_control_message.r |only pbdZMQ-0.1-1/pbdZMQ/R/111_control_sendrecv.r |only pbdZMQ-0.1-1/pbdZMQ/R/111_control_socket_option.r |only pbdZMQ-0.1-1/pbdZMQ/R/111_control_socket_type.r |only pbdZMQ-0.1-1/pbdZMQ/README |only pbdZMQ-0.1-1/pbdZMQ/data |only pbdZMQ-0.1-1/pbdZMQ/man/00_pbdZMQ-package.Rd |only pbdZMQ-0.1-1/pbdZMQ/man/11_d_control.Rd |only pbdZMQ-0.1-1/pbdZMQ/man/a0_context.Rd |only pbdZMQ-0.1-1/pbdZMQ/man/zz_zmq_internal.Rd |only pbdZMQ-0.2-0/pbdZMQ/ChangeLog | 51 ++ pbdZMQ-0.2-0/pbdZMQ/DESCRIPTION | 40 +- pbdZMQ-0.2-0/pbdZMQ/INSTALL | 67 +++ pbdZMQ-0.2-0/pbdZMQ/MD5 | 136 ++++--- pbdZMQ-0.2-0/pbdZMQ/NAMESPACE | 53 ++ pbdZMQ-0.2-0/pbdZMQ/R/000_globalVariables.r | 2 pbdZMQ-0.2-0/pbdZMQ/R/111_control.r |only pbdZMQ-0.2-0/pbdZMQ/R/222_export_env.r | 65 +++ pbdZMQ-0.2-0/pbdZMQ/R/222_export_opt.r |only pbdZMQ-0.2-0/pbdZMQ/R/R_zmq_context.r | 55 ++- pbdZMQ-0.2-0/pbdZMQ/R/R_zmq_message.r | 101 ++++- pbdZMQ-0.2-0/pbdZMQ/R/R_zmq_sendrecv.r | 128 ++++++- pbdZMQ-0.2-0/pbdZMQ/R/R_zmq_socket.r | 163 ++++++++ pbdZMQ-0.2-0/pbdZMQ/R/R_zmq_transfer.r |only pbdZMQ-0.2-0/pbdZMQ/R/R_zmq_utility.r | 60 ++- pbdZMQ-0.2-0/pbdZMQ/R/address.r |only pbdZMQ-0.2-0/pbdZMQ/R/czmq.r |only pbdZMQ-0.2-0/pbdZMQ/R/pbdZMQ-package.r |only pbdZMQ-0.2-0/pbdZMQ/R/pyzmq_wrapper.r |only pbdZMQ-0.2-0/pbdZMQ/R/random_port.r |only pbdZMQ-0.2-0/pbdZMQ/R/rzmq_wrapper.r | 115 +++++- pbdZMQ-0.2-0/pbdZMQ/R/shellexec_wcc.r | 80 +++- pbdZMQ-0.2-0/pbdZMQ/R/windows/zzz.r | 4 pbdZMQ-0.2-0/pbdZMQ/R/zzz.r.in | 10 pbdZMQ-0.2-0/pbdZMQ/README.md |only pbdZMQ-0.2-0/pbdZMQ/cleanup | 1 pbdZMQ-0.2-0/pbdZMQ/demo/hwclient.r | 2 pbdZMQ-0.2-0/pbdZMQ/demo/hwserver.r | 2 pbdZMQ-0.2-0/pbdZMQ/demo/msreader.r | 6 pbdZMQ-0.2-0/pbdZMQ/demo/tasksink.r | 2 pbdZMQ-0.2-0/pbdZMQ/demo/taskvent.r | 4 pbdZMQ-0.2-0/pbdZMQ/demo/taskwork.r | 4 pbdZMQ-0.2-0/pbdZMQ/demo/wuclient.r | 6 pbdZMQ-0.2-0/pbdZMQ/demo/wuserver.r | 2 pbdZMQ-0.2-0/pbdZMQ/inst/CITATION | 10 pbdZMQ-0.2-0/pbdZMQ/inst/doc/pbdZMQ-guide.Rnw | 13 pbdZMQ-0.2-0/pbdZMQ/inst/doc/pbdZMQ-guide.pdf |binary pbdZMQ-0.2-0/pbdZMQ/inst/examples |only pbdZMQ-0.2-0/pbdZMQ/man/a0_a_pbdZMQ-package.Rd |only pbdZMQ-0.2-0/pbdZMQ/man/a0_b_control.Rd |only pbdZMQ-0.2-0/pbdZMQ/man/a0_c_options.Rd |only pbdZMQ-0.2-0/pbdZMQ/man/a0_d_context.Rd |only pbdZMQ-0.2-0/pbdZMQ/man/a1_socket.Rd | 182 +++++----- pbdZMQ-0.2-0/pbdZMQ/man/a2_message.Rd | 75 ++-- pbdZMQ-0.2-0/pbdZMQ/man/address.Rd |only pbdZMQ-0.2-0/pbdZMQ/man/b0_sendrecv.Rd | 105 +++-- pbdZMQ-0.2-0/pbdZMQ/man/b1_sendrecvfile.Rd |only pbdZMQ-0.2-0/pbdZMQ/man/pyzmq.Rd |only pbdZMQ-0.2-0/pbdZMQ/man/random_port.Rd |only pbdZMQ-0.2-0/pbdZMQ/man/u0_shellexec.wcc.Rd | 98 ++--- pbdZMQ-0.2-0/pbdZMQ/man/xx_czmq_wrapper.Rd |only pbdZMQ-0.2-0/pbdZMQ/man/xx_rzmq_wrapper.Rd | 82 +++- pbdZMQ-0.2-0/pbdZMQ/man/xx_utility.Rd | 55 +-- pbdZMQ-0.2-0/pbdZMQ/man/zz_zmq_control.Rd | 68 +++ pbdZMQ-0.2-0/pbdZMQ/src/Makevars.in | 4 pbdZMQ-0.2-0/pbdZMQ/src/Makevars.win | 2 pbdZMQ-0.2-0/pbdZMQ/src/R_zmq.h | 1 pbdZMQ-0.2-0/pbdZMQ/src/R_zmq_context.c | 21 - pbdZMQ-0.2-0/pbdZMQ/src/R_zmq_message.c | 20 - pbdZMQ-0.2-0/pbdZMQ/src/R_zmq_sendrecv.c | 8 pbdZMQ-0.2-0/pbdZMQ/src/R_zmq_socket.c | 56 +-- pbdZMQ-0.2-0/pbdZMQ/src/R_zmq_transfer.c |only pbdZMQ-0.2-0/pbdZMQ/src/R_zmq_utility.c | 15 pbdZMQ-0.2-0/pbdZMQ/src/build_zmq.in | 3 pbdZMQ-0.2-0/pbdZMQ/src/install.libs.R | 41 ++ pbdZMQ-0.2-0/pbdZMQ/src/shellexec_wcc.c | 18 pbdZMQ-0.2-0/pbdZMQ/tests |only pbdZMQ-0.2-0/pbdZMQ/vignettes/pbdZMQ-guide.Rnw | 13 pbdZMQ-0.2-0/pbdZMQ/vignettes/pbdZMQ-include/01-introduction.tex | 2 pbdZMQ-0.2-0/pbdZMQ/vignettes/pbdZMQ-include/05-cs.tex |only pbdZMQ-0.2-0/pbdZMQ/vignettes/pbdZMQ-include/06-solaris.tex |only pbdZMQ-0.2-0/pbdZMQ/vignettes/pbdZMQ-include/99-faq.tex |only pbdZMQ-0.2-0/pbdZMQ/vignettes/pbdZMQ-include/pbdZMQ.bib | 4 83 files changed, 1496 insertions(+), 559 deletions(-)
Title: Knitr Bootstrap Framework
Description: A framework to create Bootstrap 3 HTML reports from knitr
Rmarkdown.
Author: Jim Hester
Maintainer: Jim Hester <james.f.hester@gmail.com>
Diff between knitrBootstrap versions 0.9.0 dated 2013-10-17 and 1.0.0 dated 2015-12-16
knitrBootstrap-0.9.0/knitrBootstrap/inst/examples/test.Rmd |only knitrBootstrap-0.9.0/knitrBootstrap/inst/examples/test.html |only knitrBootstrap-0.9.0/knitrBootstrap/inst/examples/three-D.html |only knitrBootstrap-0.9.0/knitrBootstrap/man/create_header.Rd |only knitrBootstrap-0.9.0/knitrBootstrap/man/primerTree.Rd |only knitrBootstrap-1.0.0/knitrBootstrap/DESCRIPTION | 23 knitrBootstrap-1.0.0/knitrBootstrap/LICENSE |only knitrBootstrap-1.0.0/knitrBootstrap/MD5 | 81 knitrBootstrap-1.0.0/knitrBootstrap/NAMESPACE | 7 knitrBootstrap-1.0.0/knitrBootstrap/R/knit_bootstrap.R | 776 +- knitrBootstrap-1.0.0/knitrBootstrap/README.md | 278 knitrBootstrap-1.0.0/knitrBootstrap/build/vignette.rds |binary knitrBootstrap-1.0.0/knitrBootstrap/inst/doc/cars.R | 12 knitrBootstrap-1.0.0/knitrBootstrap/inst/doc/cars.Rmd | 19 knitrBootstrap-1.0.0/knitrBootstrap/inst/doc/cars.html | 1388 +++- knitrBootstrap-1.0.0/knitrBootstrap/inst/doc/illusions.R | 6 knitrBootstrap-1.0.0/knitrBootstrap/inst/doc/illusions.Rmd | 9 knitrBootstrap-1.0.0/knitrBootstrap/inst/doc/illusions.html | 1453 +++- knitrBootstrap-1.0.0/knitrBootstrap/inst/doc/maps.R | 2 knitrBootstrap-1.0.0/knitrBootstrap/inst/doc/maps.Rmd | 11 knitrBootstrap-1.0.0/knitrBootstrap/inst/doc/maps.html | 1318 +++ knitrBootstrap-1.0.0/knitrBootstrap/inst/doc/math.Rmd | 23 knitrBootstrap-1.0.0/knitrBootstrap/inst/doc/math.html | 1220 +++ knitrBootstrap-1.0.0/knitrBootstrap/inst/doc/two-D.R | 5 knitrBootstrap-1.0.0/knitrBootstrap/inst/doc/two-D.Rmd | 11 knitrBootstrap-1.0.0/knitrBootstrap/inst/doc/two-D.html | 1849 ++++- knitrBootstrap-1.0.0/knitrBootstrap/inst/examples/all.Rmd | 12 knitrBootstrap-1.0.0/knitrBootstrap/inst/examples/all.html | 3347 +++++----- knitrBootstrap-1.0.0/knitrBootstrap/inst/examples/engines.Rmd | 9 knitrBootstrap-1.0.0/knitrBootstrap/inst/examples/engines.html | 2124 +++--- knitrBootstrap-1.0.0/knitrBootstrap/inst/examples/messages.Rmd | 4 knitrBootstrap-1.0.0/knitrBootstrap/inst/examples/messages.html | 2227 +++--- knitrBootstrap-1.0.0/knitrBootstrap/inst/templates/knitr_bootstrap.css | 59 knitrBootstrap-1.0.0/knitrBootstrap/inst/templates/knitr_bootstrap.js | 282 knitrBootstrap-1.0.0/knitrBootstrap/inst/templates/knitr_bootstrap_includes.html | 18 knitrBootstrap-1.0.0/knitrBootstrap/man/bootstrap_HTML.Rd | 40 knitrBootstrap-1.0.0/knitrBootstrap/man/bootstrap_document.Rd |only knitrBootstrap-1.0.0/knitrBootstrap/man/knit_bootstrap.Rd | 72 knitrBootstrap-1.0.0/knitrBootstrap/man/knit_bootstrap_md.Rd | 56 knitrBootstrap-1.0.0/knitrBootstrap/man/knitrBootstrap.Rd |only knitrBootstrap-1.0.0/knitrBootstrap/man/render_bootstrap.Rd |only knitrBootstrap-1.0.0/knitrBootstrap/vignettes/cars.Rmd | 19 knitrBootstrap-1.0.0/knitrBootstrap/vignettes/illusions.Rmd | 9 knitrBootstrap-1.0.0/knitrBootstrap/vignettes/maps.Rmd | 11 knitrBootstrap-1.0.0/knitrBootstrap/vignettes/math.Rmd | 23 knitrBootstrap-1.0.0/knitrBootstrap/vignettes/two-D.Rmd | 11 46 files changed, 11218 insertions(+), 5596 deletions(-)
More information about knitrBootstrap at CRAN
Permanent link
Title: Bayesian 4 Parameter Item Response Model
Description: Estimate Barton & Lord's four parameter IRT model with lower and upper asymptotes using Bayesian formulation described by Culpepper (2015).
Author: Steven Andrew Culpepper [aut, cre]
Maintainer: Steven Andrew Culpepper <sculpepp@illinois.edu>
Diff between fourPNO versions 1.0.2 dated 2015-11-13 and 1.0.3 dated 2015-12-16
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- man/Gibbs_2PNO.Rd | 2 +- man/Gibbs_4PNO.Rd | 2 +- 4 files changed, 9 insertions(+), 9 deletions(-)
Title: Calculations for DNA Mixtures
Description: Calculations for DNA mixtures accounting for possibly inbred pedigrees (simulations with conditioning, LR). Calculation of exact p-values.
Author: Guro Dorum and Thore Egeland
Maintainer: Guro Dorum <guro.dorum@nmbu.no>
Diff between euroMix versions 1.1 dated 2015-12-10 and 1.1.1 dated 2015-12-16
DESCRIPTION | 10 +++++----- MD5 | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-)
Title: Continuous Time Structural Equation Modelling
Description: An easily accessible continuous (and discrete) time dynamic
modelling package for panel and time series data, reliant upon the OpenMx.
package (http://openmx.psyc.virginia.edu/) for computation. Most dynamic
modelling approaches to longitudinal data rely on the assumption that time
intervals between observations are consistent. When this assumption is
adhered to, the data gathering process is necessarily limited to a specific
schedule, and when broken, the resulting parameter estimates may be biased
and reduced in power. Continuous time models are conceptually similar to
vector autoregressive models (thus also the latent change models popularised
in a structural equation modelling context), however by explicitly including
the length of time between observations, continuous time models are freed
from the assumption that measurement intervals are consistent. This allows:
data to be gathered irregularly; the elimination of noise and bias due to
varying measurement intervals; parsimonious structures for complex dynamics.
The application of such a model in this SEM framework allows full-information
maximum-likelihood estimates for both N = 1 and N > 1 cases, multiple measured
indicators per latent process, and the flexibility to incorporate additional
elements, including individual heterogeneity in the latent process and
manifest intercepts, and time dependent and independent exogenous covariates.
Furthermore, due to the SEM implementation we are able to estimate a random
effects model where the impact of time dependent and time independent predictors
can be assessed simultaneously, but without the classic problems of random
effects models assuming no covariance between unit level effects and predictors.
Author: Manuel Voelkle [aut, cph] (Original development of continuous time
model specification within OpenMx, advisor for further development),
Han Oud [aut, cph] (Original development of continuous time model
specification within OpenMx),
Charles Driver [aut, cre, cph] (Further development of continuous time
model specification within OpenMx, package development,
documentation and maintenance)
Maintainer: Charles Driver <driver@mpib-berlin.mpg.de>
Diff between ctsem versions 1.1.3 dated 2015-10-12 and 1.1.5 dated 2015-12-16
ctsem-1.1.3/ctsem/vignettes/ctsem_paper_source.zip |only ctsem-1.1.5/ctsem/DESCRIPTION | 57 +- ctsem-1.1.5/ctsem/MD5 | 102 ++-- ctsem-1.1.5/ctsem/NAMESPACE | 2 ctsem-1.1.5/ctsem/R/ctCI.R | 13 ctsem-1.1.5/ctsem/R/ctDataHelp.R | 186 +++---- ctsem-1.1.5/ctsem/R/ctFit.R | 397 ++++++++++++---- ctsem-1.1.5/ctsem/R/ctGenerate.R | 44 - ctsem-1.1.5/ctsem/R/ctIndplot.R | 12 ctsem-1.1.5/ctsem/R/ctIntervalise.R | 490 ++++++++++---------- ctsem-1.1.5/ctsem/R/ctLongtowide.r | 109 ++-- ctsem-1.1.5/ctsem/R/ctMultigroupFit.R | 2 ctsem-1.1.5/ctsem/R/ctPSMfit.R | 12 ctsem-1.1.5/ctsem/R/ctWideToLong.R | 200 ++++---- ctsem-1.1.5/ctsem/R/ctsem.R | 42 - ctsem-1.1.5/ctsem/R/ctsemUtils.R | 146 ++--- ctsem-1.1.5/ctsem/R/plot.ctsemFit.R | 22 ctsem-1.1.5/ctsem/R/summary.ctsemFit.R | 124 +++-- ctsem-1.1.5/ctsem/build/vignette.rds |binary ctsem-1.1.5/ctsem/inst/doc/ctsem.R | 172 +++---- ctsem-1.1.5/ctsem/inst/doc/ctsem.pdf |binary ctsem-1.1.5/ctsem/inst/doc/ctsem.rnw | 134 ++--- ctsem-1.1.5/ctsem/inst/tests/test-intervalise.R | 2 ctsem-1.1.5/ctsem/inst/tests/test-knownFits.R |only ctsem-1.1.5/ctsem/inst/tests/test-objectiveEquiv.R |only ctsem-1.1.5/ctsem/inst/tests/test-reshaping.R |only ctsem-1.1.5/ctsem/man/AnomAuth.Rd | 2 ctsem-1.1.5/ctsem/man/Oscillating.Rd | 4 ctsem-1.1.5/ctsem/man/ctCI.Rd | 13 ctsem-1.1.5/ctsem/man/ctDeintervalise.Rd | 2 ctsem-1.1.5/ctsem/man/ctExample1.Rd | 4 ctsem-1.1.5/ctsem/man/ctExample1TIpred.Rd | 4 ctsem-1.1.5/ctsem/man/ctExample2.Rd | 4 ctsem-1.1.5/ctsem/man/ctExample2level.Rd | 2 ctsem-1.1.5/ctsem/man/ctExample3.Rd | 2 ctsem-1.1.5/ctsem/man/ctExample4.Rd | 2 ctsem-1.1.5/ctsem/man/ctFit.Rd | 108 ++-- ctsem-1.1.5/ctsem/man/ctGenerate.Rd | 31 - ctsem-1.1.5/ctsem/man/ctIndplot.Rd | 4 ctsem-1.1.5/ctsem/man/ctIntervalise.Rd | 58 +- ctsem-1.1.5/ctsem/man/ctLongToWide.Rd | 29 - ctsem-1.1.5/ctsem/man/ctModel.Rd | 84 +-- ctsem-1.1.5/ctsem/man/ctMultigroupFit.Rd | 24 ctsem-1.1.5/ctsem/man/ctPSMfit.Rd | 12 ctsem-1.1.5/ctsem/man/ctWideNames.Rd | 4 ctsem-1.1.5/ctsem/man/ctWideToLong.Rd | 14 ctsem-1.1.5/ctsem/man/ctsem.Rd | 30 - ctsem-1.1.5/ctsem/man/datastructure.Rd | 8 ctsem-1.1.5/ctsem/man/longexample.Rd | 8 ctsem-1.1.5/ctsem/man/plot.ctsemFit.Rd | 22 ctsem-1.1.5/ctsem/man/plot.ctsemMultigroupFit.Rd | 2 ctsem-1.1.5/ctsem/man/summary.ctsemFit.Rd | 17 ctsem-1.1.5/ctsem/man/summary.ctsemMultigroupFit.Rd | 9 ctsem-1.1.5/ctsem/vignettes/ctsem.rnw | 134 ++--- 54 files changed, 1633 insertions(+), 1272 deletions(-)
Title: Bayesian Random-Effects Meta-Analysis
Description: A collection of functions allowing to derive the posterior distribution of the two parameters in a random-effects meta-analysis, and providing functionality to evaluate joint and marginal posterior probability distributions, predictive distributions, etc.
Author: Christian Roever [aut, cre], Tim Friede [ctb]
Maintainer: Christian Roever <christian.roever@med.uni-goettingen.de>
Diff between bayesmeta versions 1.0 dated 2015-12-06 and 1.1 dated 2015-12-16
bayesmeta-1.0/bayesmeta/data/Cochran1954.rda |only bayesmeta-1.0/bayesmeta/data/CrinsEtAl2014.rda |only bayesmeta-1.0/bayesmeta/data/HinksEtAl2010.rda |only bayesmeta-1.0/bayesmeta/data/Peto1980.rda |only bayesmeta-1.0/bayesmeta/data/Rubin1981.rda |only bayesmeta-1.0/bayesmeta/data/SidikJonkman2007.rda |only bayesmeta-1.0/bayesmeta/data/SnedecorCochran.rda |only bayesmeta-1.1/bayesmeta/DESCRIPTION | 19 ++++++--------- bayesmeta-1.1/bayesmeta/MD5 | 27 +++++++++++++--------- bayesmeta-1.1/bayesmeta/build |only bayesmeta-1.1/bayesmeta/data/Cochran1954.R |only bayesmeta-1.1/bayesmeta/data/CrinsEtAl2014.R |only bayesmeta-1.1/bayesmeta/data/HinksEtAl2010.R |only bayesmeta-1.1/bayesmeta/data/Peto1980.R |only bayesmeta-1.1/bayesmeta/data/Rubin1981.R |only bayesmeta-1.1/bayesmeta/data/SidikJonkman2007.R |only bayesmeta-1.1/bayesmeta/data/SnedecorCochran.R |only bayesmeta-1.1/bayesmeta/inst |only bayesmeta-1.1/bayesmeta/man/Rubin1981.Rd | 2 - bayesmeta-1.1/bayesmeta/man/bayesmeta-package.Rd | 4 +-- bayesmeta-1.1/bayesmeta/man/bayesmeta.Rd | 3 +- bayesmeta-1.1/bayesmeta/vignettes |only 22 files changed, 29 insertions(+), 26 deletions(-)
Title: Test Analysis Modules
Description:
Includes marginal and joint maximum likelihood
estimation of uni- and multidimensional item response models
(Rasch, 2PL, 3PL, Generalized Partial Credit, Multi Facets,
Nominal Item Response, Structured Latent Class Analysis,
Mixture Distribution IRT Models, Located Latent Class Models).
Latent regression models and plausible value imputation are
also supported.
Author:
Thomas Kiefer [aut], Alexander Robitzsch [aut, cre], Margaret Wu [aut]
Maintainer:
Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between TAM versions 1.14-0 dated 2015-10-15 and 1.15-0 dated 2015-12-16
DESCRIPTION | 40 ++++------ MD5 | 96 ++++++++++++------------ R/IRT.likelihood.TAM.R | 4 + R/calc_posterior.v2.R | 9 +- R/designMatrices.R | 1 R/designMatrices.mfr.R | 13 ++- R/designMatrices.mfr2.R | 9 ++ R/designMatrices.mfr_aux.R | 4 - R/designMatrices_aux.R | 19 ++++ R/designMatrices_aux2.R | 19 ++++ R/tam.latreg.R | 4 - R/tam.mml.2pl.R | 46 +++++++++-- R/tam.mml.3pl.R | 18 +++- R/tam.mml.R | 23 ++++- R/tam.mml.mfr.R | 150 ++++++++++++++++++++++++++++++-------- data/data.cqc01.rda |binary data/data.cqc02.rda |binary data/data.cqc03.rda |binary data/data.cqc04.rda |binary data/data.cqc05.rda |binary data/data.ctest1.rda |binary data/data.ctest2.rda |binary data/data.ex08.rda |binary data/data.ex10.rda |binary data/data.ex11.rda |binary data/data.ex12.rda |binary data/data.ex14.rda |binary data/data.ex15.rda |binary data/data.exJ03.rda |binary data/data.fims.Aus.Jpn.raw.rda |binary data/data.fims.Aus.Jpn.scored.rda |binary data/data.geiser.rda |binary data/data.gpcm.rda |binary data/data.janssen.rda |binary data/data.janssen2.rda |binary data/data.mc.rda |binary data/data.numeracy.rda |binary data/data.sim.facets.rda |binary data/data.sim.mfr.rda |binary data/data.sim.rasch.missing.rda |binary data/data.sim.rasch.pweights.rda |binary data/data.sim.rasch.rda |binary data/data.timssAusTwn.rda |binary data/data.timssAusTwn.scored.rda |binary inst/NEWS | 38 +++++++++ man/IRT.data.tam.Rd | 2 man/TAM-package.Rd | 4 - man/tam.mml.3pl.Rd | 6 + man/tam.mml.Rd | 14 ++- 49 files changed, 382 insertions(+), 137 deletions(-)
Title: Evaluation of the Proportional Hazards Assumption with a
Standardized Score Process
Description: Provides tools for the evaluation of the goodness of fit and the predictive capacity of the proportional hazards model.
Author: Cecile Chauvel
Maintainer: Cecile Chauvel <chauvel.cecile@gmail.com>
Diff between PHeval versions 0.5.2 dated 2014-12-16 and 0.5.3 dated 2015-12-16
DESCRIPTION | 16 ++++++++-------- MD5 | 6 +++--- NAMESPACE | 1 + man/plotscore.Rd | 3 +-- 4 files changed, 13 insertions(+), 13 deletions(-)
Title: Tools to Evaluate DNA Profile Evidence
Description: Tools to determine DNA profile Weight of Evidence.
For further information see the likeLTD guide provided,
or the paper under citation.
Author: David Balding, Adrian Timpson, Christopher Steele, Mayeul d'Avezac, James Hetherington.
Maintainer: Christopher Steele <c.steele.11@ucl.ac.uk>
Diff between likeLTD versions 5.5.0 dated 2015-03-12 and 6.0.0 dated 2015-12-16
DESCRIPTION | 14 MD5 | 102 ++++--- NAMESPACE | 35 ++ R/genetics-peaks.R |only R/genetics.R | 143 +++++++++- R/hypothesis-peaks.R |only R/hypothesis.R | 27 + R/maximize-peaks.R |only R/maximize.R | 48 ++- R/objectives-peaks.R |only R/plotter.R | 2 R/reports-peaks.R |only R/reports.R | 91 ++++-- build |only data/DNA17-db.txt.gz |binary data/Identifiler-db.txt.gz |binary data/SGMplus-db.txt.gz |binary data/lgc-allele-freqs-wbp.txt.gz |only inst/doc/likeLTDguide.pdf |binary inst/doc/usage.R | 404 ++++++++++------------------ inst/doc/usage.Rnw | 465 ++++++++++++++------------------- inst/doc/usage.pdf |binary inst/extdata/laboratory |only inst/unitTests/runit_objective.R | 28 - man/CSP.heights.plot.Rd |only man/DNA17-db.Rd | 5 man/Identifiler-db.Rd | 4 man/SGMplus-db.Rd | 4 man/allele.report.Rd | 16 + man/allele.report.peaks.Rd |only man/create.likelihood.log.Rd | 2 man/create.likelihood.vectors.peaks.Rd |only man/defence.hypothesis.Rd | 34 ++ man/defence.hypothesis.peaks.Rd |only man/evaluate.Rd | 47 +++ man/evaluate.from.interim.Rd | 6 man/evaluate.from.interim.peaks.Rd |only man/evaluate.peaks.Rd |only man/get.likely.genotypes.Rd | 44 +++ man/get.likely.genotypes.peaks.Rd |only man/lgc-allele-freqs-wbp.Rd |only man/load.allele.database.Rd | 21 + man/locus.likes.Rd | 42 ++ man/locus.likes.peaks.Rd |only man/optimisation.params.Rd | 33 ++ man/optimisation.params.peaks.Rd |only man/output.report.Rd | 38 ++ man/output.report.peaks.Rd |only man/pack.admin.input.Rd | 25 + man/pack.admin.input.peaks.Rd |only man/peaks.results.plot.Rd |only man/prosecution.hypothesis.Rd | 34 ++ man/prosecution.hypothesis.peaks.Rd |only man/read.csp.profile.Rd | 15 + man/read.known.profiles.Rd | 35 ++ man/read.peaks.profile.Rd |only man/read.unc.profile.Rd | 15 + man/relistArguments.peaks.Rd |only man/unitTests.likeLTD.Rd | 2 src/gammaDist.cpp |only src/gammaDist.h |only src/maximizePeaks.cpp |only src/maximizePeaks.h |only src/module.cpp | 15 + vignettes/usage.Rnw | 465 ++++++++++++++------------------- 65 files changed, 1353 insertions(+), 908 deletions(-)
Title: Temporal Trend Analysis Graphical Interface
Description: This interface was created to develop a standard procedure
to analyse temporal trend in the framework of the OSPAR convention.
The analysis process run through 4 successive steps : 1) manipulate your data, 2)
select the parameters you want to analyse, 3) build your regulated
time series, 4) perform diagnosis and analysis and 5) read the results.
Statistical analysis call other package function such as Kendall tests
or cusum() function.
Author: David DEVREKER [aut],
Alain LEFEBVRE [aut, cre]
Maintainer: Alain LEFEBVRE <Alain.Lefebvre@ifremer.fr>
Diff between TTAinterfaceTrendAnalysis versions 1.5.1 dated 2014-02-21 and 1.5.2 dated 2015-12-16
DESCRIPTION | 26 - MD5 | 37 +- NAMESPACE | 25 + NEWS | 15 - R/About.R |only R/Envir.r | 4 R/FULLoption.r | 543 +++++++++++++++++++----------------- R/TTAinterface.R | 657 ++++++++++++++++++++++---------------------- R/aide3.r | 2 R/fixdata.R | 514 +++++++++++++++++----------------- R/selectdirectory.R | 505 +++++++++++++++++---------------- R/zzz.R | 15 - build/vignette.rds |binary inst/aide/TTAinterface.gif |only inst/aide/iconTTA.ico |only inst/doc/TTAVignette.Rnw | 4 inst/doc/TTAVignette.pdf |binary inst/doc/UserGuide.pdf |binary man/TTAinterface-package.Rd | 4 vignettes/TTAVignette.Rnw | 4 vignettes/figure5.jpg |binary 21 files changed, 1223 insertions(+), 1132 deletions(-)
More information about TTAinterfaceTrendAnalysis at CRAN
Permanent link
More information about rebus.datetimes at CRAN
Permanent link
Title: Interface to the 'OpenBUGS' MCMC Software
Description: Fully-interactive R interface to the 'OpenBUGS' software for Bayesian analysis using MCMC sampling. Runs natively and stably in 32-bit R under Windows. Versions running on Linux and on 64-bit R under Windows are in "beta" status and less efficient.
Author: OpenBUGS was developed by Andrew Thomas, Dave Lunn, David Spiegelhalter and Nicky Best. R interface developed by Uwe Ligges, Sibylle Sturtz, Andrew Gelman, Gregor Gorjanc and Chris Jackson. Linux port and most recent developments by Chris Jackson.
Maintainer: Uwe Ligges <ligges@statistik.tu-dortmund.de>
Diff between BRugs versions 0.8-5 dated 2015-07-29 and 0.8-6 dated 2015-12-16
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS | 4 ++++ data/ratsdata.RData |binary data/ratsinits.RData |binary src/Makefile.win | 14 +++++++------- tests/examples.R | 10 ++++++---- tests/examples.Rout.save | 12 ++++++------ 8 files changed, 34 insertions(+), 28 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad
Sanderson) that aims towards a good balance between speed and ease of use. Integer,
floating point and complex numbers are supported, as well as a subset of
trigonometric and statistics functions. Various matrix decompositions are
provided through optional integration with LAPACK and ATLAS libraries.
The 'RcppArmadillo' package includes the header files from the templated
'Armadillo' library. Thus users do not need to install 'Armadillo' itself in
order to use 'RcppArmadillo'. 'Armadillo' is licensed under the MPL 2.0, while
'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the
GNU GPL version 2 or later, as is the rest of 'Rcpp'.
Author: Dirk Eddelbuettel, Romain Francois and Doug Bates
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 0.6.300.2.2 dated 2015-12-13 and 0.6.400.2.2 dated 2015-12-16
ChangeLog | 227 ++++++++++---------- DESCRIPTION | 8 MD5 | 48 ++-- inst/NEWS.Rd | 12 + inst/doc/RcppArmadillo-intro.pdf |binary inst/doc/RcppArmadillo-unitTests.pdf |binary inst/include/armadillo | 1 inst/include/armadillo_bits/Cube_bones.hpp | 13 - inst/include/armadillo_bits/Cube_meat.hpp | 73 ++++++ inst/include/armadillo_bits/Mat_bones.hpp | 12 + inst/include/armadillo_bits/Mat_meat.hpp | 170 ++++++++++++++ inst/include/armadillo_bits/arma_rng_cxx11.hpp | 4 inst/include/armadillo_bits/arma_version.hpp | 6 inst/include/armadillo_bits/auxlib_meat.hpp | 39 ++- inst/include/armadillo_bits/compiler_setup.hpp | 1 inst/include/armadillo_bits/field_bones.hpp | 6 inst/include/armadillo_bits/field_meat.hpp | 109 +++++++-- inst/include/armadillo_bits/fn_misc.hpp | 70 ++++++ inst/include/armadillo_bits/gmm_diag_meat.hpp | 2 inst/include/armadillo_bits/subview_bones.hpp | 10 inst/include/armadillo_bits/subview_cube_bones.hpp | 7 inst/include/armadillo_bits/subview_cube_meat.hpp | 84 +++++++ inst/include/armadillo_bits/subview_field_bones.hpp | 1 inst/include/armadillo_bits/subview_field_meat.hpp | 31 ++ inst/include/armadillo_bits/subview_meat.hpp | 204 ++++++++++++++++- 25 files changed, 936 insertions(+), 202 deletions(-)
Title: Power Analysis for Random Effects in Mixed Models
Description: Simulation functions to assess or explore the power of a dataset to estimates significant random effects (intercept or slope) in a mixed model. The functions are based on the "lme4" package.
Author: Julien Martin [aut, cre]
Maintainer: Julien Martin <julienmartin@abdn.ac.uk>
Diff between pamm versions 0.7 dated 2010-05-26 and 0.9 dated 2015-12-16
DESCRIPTION | 29 ++-- MD5 |only NAMESPACE |only R/EAMM.R | 375 ++++++++++++++++++++++++++++++++++------------------ R/PAMM.R | 303 ++++++++++++++++++++++++------------------ R/SSF.R | 255 +++++++++++++++++++---------------- R/plot.EAMM.R | 213 +++++++++++++++-------------- R/plot.PAMM.R | 329 +++++++++++++++++++++++++++++---------------- R/plot.SSF.R | 30 ++-- inst |only man/EAMM.Rd | 11 + man/PAMM.Rd | 5 man/SSF.Rd | 4 man/pamm-package.Rd | 8 - man/plot.EAMM.Rd | 18 +- man/plot.PAMM.Rd | 97 +++++++------ man/plot.SSF.Rd | 2 17 files changed, 1006 insertions(+), 673 deletions(-)
Title: Count All Common Subsequences
Description: Count all common subsequences between 2 string sequences, with
items separated by the same delimiter. The first string input is a length-
one vector, the second string input can be a vector or list containing
multiple strings. The algorithm differentiates between the more strict
definition of subsequence, where a common subsequence cannot be separated
by any other items, from its looser counterpart, where a common subsequence
can be interrupted by other items. For example, q-w is a common subsequence
of q-w-e-r and q-e-w-r on the looser definition, but not the more strict
definition. calACSLoose Algorithm from Wang, H. All common subsequences
(2007) IJCAI International Joint Conference on Artificial Intelligence, pp. 635-640.
Author: Alan Gu
Maintainer: Alan Gu <alan.on.ca@gmail.com>
Diff between calACS versions 0.2 dated 2015-11-15 and 1.1 dated 2015-12-16
calACS-0.2/calACS/man/calACS.Rd |only calACS-0.2/calACS/man/calACSstr.Rd |only calACS-1.1/calACS/DESCRIPTION | 17 +++++++----- calACS-1.1/calACS/MD5 | 20 ++++++++++---- calACS-1.1/calACS/NAMESPACE | 6 ++-- calACS-1.1/calACS/R/GeneratePossibleSubsequences.r |only calACS-1.1/calACS/R/calACS.R | 9 +++--- calACS-1.1/calACS/R/calACSLoose.r |only calACS-1.1/calACS/R/calACSstr.R | 25 ++++++++++++------ calACS-1.1/calACS/R/calACSstrLoose.r |only calACS-1.1/calACS/R/is.subvector.r |only calACS-1.1/calACS/man/GeneratePossibleSubsequences.Rd |only calACS-1.1/calACS/man/calACSLoose.Rd |only calACS-1.1/calACS/man/calACSStrict.Rd |only calACS-1.1/calACS/man/calACSstrLoose.Rd |only calACS-1.1/calACS/man/calACSstrStrict.Rd |only calACS-1.1/calACS/man/is.subvector.Rd |only 17 files changed, 51 insertions(+), 26 deletions(-)