Wed, 16 Dec 2015

Package TSsdmx updated to version 2015.12-1 with previous version 2015.2-2 dated 2015-04-30

Title: 'TSdbi' Extension to Connect with 'SDMX'
Description: Methods to retrieve data in the Statistical Data and Metadata Exchange ('SDMX') format from several database. (For example, EuroStat, the European Central Bank, the Organisation for Economic Co-operation and Development, the Unesco Institute for Statistics, and the International Labor Organization.) This is a wrapper for package 'RJSDMX'. Comprehensive examples of all the 'TS*' packages is provided in the vignette Guide.pdf with the 'TSdata' package.
Author: Paul Gilbert <pgilbert.ttv9z@ncf.ca>
Maintainer: Paul Gilbert <pgilbert.ttv9z@ncf.ca>

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Package TSdbi updated to version 2015.7-1 with previous version 2015.1-1 dated 2015-04-29

Title: Time Series Database Interface
Description: Provides a common interface to time series databases. The objective is to define a standard interface so users can retrieve time series data from various sources with a simple, common, set of commands, and so programs can be written to be portable with respect to the data source. The SQL implementations also provide a database table design, so users needing to set up a time series database have a reasonably complete way to do this easily. The interface provides for a variety of options with respect to the representation of time series in R. The interface, and the SQL implementations, also handle vintages of time series data (sometime called editions or realtime data). There is also a (not yet well tested) mechanism to handle multilingual data documentation. Comprehensive examples of all the TS* packages is provided in the vignette Guide.pdf with the TSdata package.
Author: Paul Gilbert <pgilbert.ttv9z@ncf.ca>
Maintainer: Paul Gilbert <pgilbert.ttv9z@ncf.ca>

Diff between TSdbi versions 2015.1-1 dated 2015-04-29 and 2015.7-1 dated 2015-12-16

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Package RSGHB updated to version 1.1.2 with previous version 1.1.1 dated 2015-07-16

Title: Functions for Hierarchical Bayesian Estimation: A Flexible Approach
Description: Functions for estimating models using a Hierarchical Bayesian (HB) framework. The flexibility comes in allowing the user to specify the likelihood function directly instead of assuming predetermined model structures. Types of models that can be estimated with this code include the family of discrete choice models (Multinomial Logit, Mixed Logit, Nested Logit, Error Components Logit and Latent Class) as well ordered response models like ordered probit and ordered logit. In addition, the package allows for flexibility in specifying parameters as either fixed (non-varying across individuals) or random with continuous distributions. Parameter distributions supported include normal, positive/negative log-normal, positive/negative censored normal, and the Johnson SB distribution. Kenneth Train's Matlab and Gauss code for doing Hierarchical Bayesian estimation has served as the basis for a few of the functions included in this package. These Matlab/Gauss functions have been rewritten to be optimized within R. Considerable code has been added to increase the flexibility and usability of the code base. Train's original Gauss and Matlab code can be found here: http://elsa.berkeley.edu/Software/abstracts/train1006mxlhb.html See Train's chapter on HB in Discrete Choice with Simulation here: http://elsa.berkeley.edu/books/choice2.html; and his paper on using HB with non-normal distributions here: http://eml.berkeley.edu//~train/trainsonnier.pdf.
Author: Jeff Dumont [aut, cre], Jeff Keller [aut], Chase Carpenter [ctb]
Maintainer: Jeff Dumont <Jeff.Dumont@rsginc.com>

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Package R.devices updated to version 2.13.2 with previous version 2.13.1 dated 2015-09-22

Title: Unified Handling of Graphics Devices
Description: Functions for creating plots and image files in a unified way regardless of output format (EPS, PDF, PNG, SVG, TIFF, WMF, etc.). Default device options as well as scales and aspect ratios are controlled in a uniform way across all device types. Switching output format requires minimal changes in code. This package is ideal for large-scale batch processing, because it will never leave open graphics devices or incomplete image files behind, even on errors or user interrupts.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>

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New package gpDDE with initial version 0.8.2
Package: gpDDE
Title: General Profiling Method for Delay Differential Equation
Version: 0.8.2
Authors@R: c(person("Ziqian", "Zhou", email = "ziqian-zhou@uiowa.edu", role = c("aut", "cre")), person("Kung-Sik", "Chan", email = "kung-sik-chan@uiowa.edu", role = c("aut")))
Description: Functions implement collocation-inference for stochastic process driven by distributed delay differential equations. They also provide tools for selecting the lags for distributed delay using shrinkage methods, estimating time-varying coefficients, and tools for inference and prediction.
Depends: R (>= 3.2.1), fda, CollocInfer (>= 1.0.2)
License: GPL (>= 2)
LazyData: true
Imports: penalized, nnls, deSolve, MASS, TSA, lars, limSolve, forecast, trustOptim, methods
NeedsCompilation: no
Packaged: 2015-12-16 19:31:00 UTC; ziqian
Author: Ziqian Zhou [aut, cre], Kung-Sik Chan [aut]
Maintainer: Ziqian Zhou <ziqian-zhou@uiowa.edu>
Repository: CRAN
Date/Publication: 2015-12-16 23:25:34

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Package tframe updated to version 2015.12-1 with previous version 2015.1-1 dated 2015-01-05

Title: Time Frame Coding Kernel
Description: A kernel of functions for programming time series methods in a way that is relatively independently of the representation of time. Also provides plotting, time windowing, and some other utility functions which are specifically intended for time series. See the Guide distributed as a vignette, or ?tframe.Intro for more details. (User utilities are in package tfplot.)
Author: Paul Gilbert <pgilbert.ttv9z@ncf.ca>
Maintainer: Paul Gilbert <pgilbert.ttv9z@ncf.ca>

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Package tfplot updated to version 2015.12-1 with previous version 2015.4-1 dated 2015-04-28

Title: Time Frame User Utilities
Description: Utilities for simple manipulation and quick plotting of time series data. These utilities use the tframe package which provides a programming kernel for time series. Extensions to tframe provided in tframePlus can also be used. See the Guide vignette for examples.
Author: Paul Gilbert <pgilbert.ttv9z@ncf.ca>
Maintainer: Paul Gilbert <pgilbert.ttv9z@ncf.ca>

Diff between tfplot versions 2015.4-1 dated 2015-04-28 and 2015.12-1 dated 2015-12-16

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Package simmer updated to version 3.1.1 with previous version 3.1.0 dated 2015-12-15

Title: Just Let it Simmer
Description: Discrete-Event Simulation (DES) package for R.
Author: Bart Smeets [aut], Iñaki Ucar [aut, cre]
Maintainer: Iñaki Ucar <i.ucar86@gmail.com>

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New package envlpaster with initial version 0.1-1
Package: envlpaster
Title: Enveloping the Aster Model
Version: 0.1-1
Date: 2015-12-15
Author: Daniel J. Eck <eckxx049@umn.edu>
Maintainer: Daniel J. Eck <eckxx049@umn.edu>
Description: Envelope methodology and aster modeling are combined to provide users with precise estimation of expected Darwinian fitness.
Depends: R (>= 2.10.0), aster
Imports: caTools, MASS, aster2
License: GPL-2
NeedsCompilation: no
Packaged: 2015-12-16 16:11:32 UTC; hornik
Repository: CRAN
Date/Publication: 2015-12-16 17:44:57

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Package dse updated to version 2015.12-1 with previous version 2014.11-1 dated 2014-11-25

Title: Dynamic Systems Estimation (Time Series Package)
Description: Tools for multivariate, linear, time-invariant, time series models. This includes ARMA and state-space representations, and methods for converting between them. It also includes simulation methods and several estimation functions. The package has functions for looking at model roots, stability, and forecasts at different horizons. The ARMA model representation is general, so that VAR, VARX, ARIMA, ARMAX, ARIMAX can all be considered to be special cases. Kalman filter and smoother estimates can be obtained from the state space model, and state-space model reduction techniques are implemented. An introduction and User's Guide is available in a vignette.
Author: Paul Gilbert <pgilbert.ttv9z@ncf.ca>
Maintainer: Paul Gilbert <pgilbert.ttv9z@ncf.ca>

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Package calACS updated to version 1.2 with previous version 1.1 dated 2015-12-16

Title: Count All Common Subsequences
Description: Count all common subsequences between 2 string sequences, with items separated by the same delimiter. The first string input is a length- one vector, the second string input can be a vector or list containing multiple strings. The algorithm differentiates between the more strict definition of subsequence, where a common subsequence cannot be separated by any other items, from its looser counterpart, where a common subsequence can be interrupted by other items. For example, q-w is a common subsequence of q-w-e-r and q-e-w-r on the looser definition, but not the more strict definition. calACSLoose Algorithm from Wang, H. All common subsequences (2007) IJCAI International Joint Conference on Artificial Intelligence, pp. 635-640.
Author: Alan Gu
Maintainer: Alan Gu <alan.on.ca@gmail.com>

Diff between calACS versions 1.1 dated 2015-12-16 and 1.2 dated 2015-12-16

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Package rpf updated to version 0.51 with previous version 0.49 dated 2015-11-19

Title: Response Probability Functions
Description: The purpose of this package is to factor out logic and math common to Item Factor Analysis fitting, diagnostics, and analysis. It is envisioned as core support code suitable for more specialized IRT packages to build upon. Complete access to optimized C functions are made available with R_RegisterCCallable.
Author: Joshua Pritikin [cre, aut], Jonathan Weeks [ctb], Li Cai [ctb], Carrie Houts [ctb], Phil Chalmers [ctb], Michael D. Hunter [ctb], Carl F. Falk [ctb]
Maintainer: Joshua Pritikin <jpritikin@pobox.com>

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Package rebus updated to version 0.1-0 with previous version 0.0-5 dated 2015-02-04

Title: Build Regular Expressions in a Human Readable Way
Description: Build regular expressions piece by piece using human readable code. This package is designed for interactive use. For package development, use the rebus.* dependencies.
Author: Richard Cotton [aut, cre]
Maintainer: Richard Cotton <richierocks@gmail.com>

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Package plfm updated to version 2.1 with previous version 1.1.2 dated 2014-12-28

Title: Probabilistic Latent Feature Analysis
Description: Functions for estimating probabilistic latent feature models with a disjunctive or a conjunctive mapping rule on (aggregated) binary three-way data.
Author: Michel Meulders [aut, cre], Philippe De Bruecker [ctb]
Maintainer: Michel Meulders <michel.meulders@kuleuven.be>

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Package pbdZMQ updated to version 0.2-0 with previous version 0.1-1 dated 2015-09-23

Title: Programming with Big Data -- Interface to ZeroMQ
Description: 'ZeroMQ' is a well-known library for high-performance asynchronous messaging in scalable, distributed applications. This package provides high level R wrapper functions to easily utilize 'ZeroMQ'. We mainly focus on interactive client/server programming frameworks. For convenience, a minimal 'ZeroMQ' library (4.1.0 rc1) is shipped with 'pbdZMQ', which can be used if no system installation of 'ZeroMQ' is available. A few wrapper functions compatible with 'rzmq' are also provided.
Author: Wei-Chen Chen [aut, cre], Drew Schmidt [aut], Christian Heckendorf [aut] (file transfer), George Ostrouchov [aut] (Mac OSX), Whit Armstrong [ctb] (some functions are modified from the rzmq package for backwards compatibility), Brian Ripley [ctb] (C code of shellexec, and Solaris), R Core team [ctb] (some functions are modified from the R source code)
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>

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New package PhySortR with initial version 1.0.2
Package: PhySortR
Type: Package
Title: A Fast, Flexible Tool for Sorting Phylogenetic Trees
Version: 1.0.2
Date: 2015-12-16
Authors@R: c(person("Timothy", "Stephens", email = "timothy.stephens1@uqconnect.edu.au", role = c("aut", "cre", "trl"), comment = "R port"), person("Debashish", "Bhattacharya", email = "Bhattacharya@AESOP.Rutgers.edu", role = c("aut")), person("Mark", "Ragan", email = "m.ragan@imb.uq.edu.au", role = c("aut")), person("Cheong Xin", "Chan", email = "c.chan1@uq.edu.au", role = c("aut", "cph"), comment = "Original Perl implementation"))
Maintainer: Timothy Stephens <timothy.stephens1@uqconnect.edu.au>
Description: Screens and sorts phylogenetic trees in both traditional and extended Newick format. Allows for the fast and flexible screening (within a tree) of Exclusive clades that comprise only the target taxa and/or Non- Exclusive clades that includes a defined portion of non-target taxa.
Depends: R (>= 3.0.0)
Imports: phytools, ape
Repository: CRAN
LazyData: true
License: GPL (>= 3)
RoxygenNote: 5.0.0
NeedsCompilation: no
Packaged: 2015-12-16 12:37:43 UTC; Timothy
Author: Timothy Stephens [aut, cre, trl] (R port), Debashish Bhattacharya [aut], Mark Ragan [aut], Cheong Xin Chan [aut, cph] (Original Perl implementation)
Date/Publication: 2015-12-16 15:10:47

More information about PhySortR at CRAN
Permanent link

Package knitrBootstrap updated to version 1.0.0 with previous version 0.9.0 dated 2013-10-17

Title: Knitr Bootstrap Framework
Description: A framework to create Bootstrap 3 HTML reports from knitr Rmarkdown.
Author: Jim Hester
Maintainer: Jim Hester <james.f.hester@gmail.com>

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Package fourPNO updated to version 1.0.3 with previous version 1.0.2 dated 2015-11-13

Title: Bayesian 4 Parameter Item Response Model
Description: Estimate Barton & Lord's four parameter IRT model with lower and upper asymptotes using Bayesian formulation described by Culpepper (2015).
Author: Steven Andrew Culpepper [aut, cre]
Maintainer: Steven Andrew Culpepper <sculpepp@illinois.edu>

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Package euroMix updated to version 1.1.1 with previous version 1.1 dated 2015-12-10

Title: Calculations for DNA Mixtures
Description: Calculations for DNA mixtures accounting for possibly inbred pedigrees (simulations with conditioning, LR). Calculation of exact p-values.
Author: Guro Dorum and Thore Egeland
Maintainer: Guro Dorum <guro.dorum@nmbu.no>

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Permanent link

Package ctsem updated to version 1.1.5 with previous version 1.1.3 dated 2015-10-12

Title: Continuous Time Structural Equation Modelling
Description: An easily accessible continuous (and discrete) time dynamic modelling package for panel and time series data, reliant upon the OpenMx. package (http://openmx.psyc.virginia.edu/) for computation. Most dynamic modelling approaches to longitudinal data rely on the assumption that time intervals between observations are consistent. When this assumption is adhered to, the data gathering process is necessarily limited to a specific schedule, and when broken, the resulting parameter estimates may be biased and reduced in power. Continuous time models are conceptually similar to vector autoregressive models (thus also the latent change models popularised in a structural equation modelling context), however by explicitly including the length of time between observations, continuous time models are freed from the assumption that measurement intervals are consistent. This allows: data to be gathered irregularly; the elimination of noise and bias due to varying measurement intervals; parsimonious structures for complex dynamics. The application of such a model in this SEM framework allows full-information maximum-likelihood estimates for both N = 1 and N > 1 cases, multiple measured indicators per latent process, and the flexibility to incorporate additional elements, including individual heterogeneity in the latent process and manifest intercepts, and time dependent and independent exogenous covariates. Furthermore, due to the SEM implementation we are able to estimate a random effects model where the impact of time dependent and time independent predictors can be assessed simultaneously, but without the classic problems of random effects models assuming no covariance between unit level effects and predictors.
Author: Manuel Voelkle [aut, cph] (Original development of continuous time model specification within OpenMx, advisor for further development), Han Oud [aut, cph] (Original development of continuous time model specification within OpenMx), Charles Driver [aut, cre, cph] (Further development of continuous time model specification within OpenMx, package development, documentation and maintenance)
Maintainer: Charles Driver <driver@mpib-berlin.mpg.de>

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Package bayesmeta updated to version 1.1 with previous version 1.0 dated 2015-12-06

Title: Bayesian Random-Effects Meta-Analysis
Description: A collection of functions allowing to derive the posterior distribution of the two parameters in a random-effects meta-analysis, and providing functionality to evaluate joint and marginal posterior probability distributions, predictive distributions, etc.
Author: Christian Roever [aut, cre], Tim Friede [ctb]
Maintainer: Christian Roever <christian.roever@med.uni-goettingen.de>

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Package TAM updated to version 1.15-0 with previous version 1.14-0 dated 2015-10-15

Title: Test Analysis Modules
Description: Includes marginal and joint maximum likelihood estimation of uni- and multidimensional item response models (Rasch, 2PL, 3PL, Generalized Partial Credit, Multi Facets, Nominal Item Response, Structured Latent Class Analysis, Mixture Distribution IRT Models, Located Latent Class Models). Latent regression models and plausible value imputation are also supported.
Author: Thomas Kiefer [aut], Alexander Robitzsch [aut, cre], Margaret Wu [aut]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>

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 inst/NEWS                         |   38 +++++++++
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 man/TAM-package.Rd                |    4 -
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 49 files changed, 382 insertions(+), 137 deletions(-)

More information about TAM at CRAN
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New package rebus.unicode with initial version 0.0-1
Package: rebus.unicode
Type: Package
Title: Unicode Extensions for the 'rebus' Package
Version: 0.0-1
Date: 2015-12-15
Author: Richard Cotton [aut, cre]
Maintainer: Richard Cotton <richierocks@gmail.com>
Authors@R: person("Richard", "Cotton", role = c("aut", "cre"), email = "richierocks@gmail.com")
Description: Build regular expressions piece by piece using human readable code. This package contains Unicode functionality, and is primarily intended to be used by package developers.
Depends: R (>= 3.1.0)
Imports: rebus.base
License: Unlimited
LazyLoad: yes
LazyData: yes
Acknowledgments: Development of this package was partially funded by the Proteomics Core at Weill Cornell Medical College in Qatar <http://qatar-weill.cornell.edu>. The Core is supported by 'Biomedical Research Program' funds, a program funded by Qatar Foundation.
Collate: 'imports.R' 'unicode-classes.R' 'unicode-constants.R'
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2015-12-16 10:29:20 UTC; rjc2003
Repository: CRAN
Date/Publication: 2015-12-16 12:00:16

More information about rebus.unicode at CRAN
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New package rebus.numbers with initial version 0.0-1
Package: rebus.numbers
Title: Numeric Extensions for the 'rebus' Package
Version: 0.0-1
Date: 2015-12-16
Author: Richard Cotton [aut, cre]
Maintainer: Richard Cotton <richierocks@gmail.com>
Authors@R: person("Richard", "Cotton", role = c("aut", "cre"), email = "richierocks@gmail.com")
Description: Build regular expressions piece by piece using human readable code. This package contains number-related functionality, and is primarily intended to be used by package developers.
Depends: R (>= 3.1.0)
Imports: rebus.base, utils
Suggests: testthat
License: Unlimited
LazyLoad: yes
LazyData: yes
Acknowledgments: Development of this package was partially funded by the Proteomics Core at Weill Cornell Medical College in Qatar <http://qatar-weill.cornell.edu>. The Core is supported by 'Biomedical Research Program' funds, a program funded by Qatar Foundation.
RoxygenNote: 5.0.1
Collate: 'imports.R' 'number_range.R' 'roman.R'
NeedsCompilation: no
Packaged: 2015-12-16 09:45:00 UTC; rjc2003
Repository: CRAN
Date/Publication: 2015-12-16 12:00:14

More information about rebus.numbers at CRAN
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Package PHeval updated to version 0.5.3 with previous version 0.5.2 dated 2014-12-16

Title: Evaluation of the Proportional Hazards Assumption with a Standardized Score Process
Description: Provides tools for the evaluation of the goodness of fit and the predictive capacity of the proportional hazards model.
Author: Cecile Chauvel
Maintainer: Cecile Chauvel <chauvel.cecile@gmail.com>

Diff between PHeval versions 0.5.2 dated 2014-12-16 and 0.5.3 dated 2015-12-16

 DESCRIPTION      |   16 ++++++++--------
 MD5              |    6 +++---
 NAMESPACE        |    1 +
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 4 files changed, 13 insertions(+), 13 deletions(-)

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Package likeLTD updated to version 6.0.0 with previous version 5.5.0 dated 2015-03-12

Title: Tools to Evaluate DNA Profile Evidence
Description: Tools to determine DNA profile Weight of Evidence. For further information see the likeLTD guide provided, or the paper under citation.
Author: David Balding, Adrian Timpson, Christopher Steele, Mayeul d'Avezac, James Hetherington.
Maintainer: Christopher Steele <c.steele.11@ucl.ac.uk>

Diff between likeLTD versions 5.5.0 dated 2015-03-12 and 6.0.0 dated 2015-12-16

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 65 files changed, 1353 insertions(+), 908 deletions(-)

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Package TTAinterfaceTrendAnalysis updated to version 1.5.2 with previous version 1.5.1 dated 2014-02-21

Title: Temporal Trend Analysis Graphical Interface
Description: This interface was created to develop a standard procedure to analyse temporal trend in the framework of the OSPAR convention. The analysis process run through 4 successive steps : 1) manipulate your data, 2) select the parameters you want to analyse, 3) build your regulated time series, 4) perform diagnosis and analysis and 5) read the results. Statistical analysis call other package function such as Kendall tests or cusum() function.
Author: David DEVREKER [aut], Alain LEFEBVRE [aut, cre]
Maintainer: Alain LEFEBVRE <Alain.Lefebvre@ifremer.fr>

Diff between TTAinterfaceTrendAnalysis versions 1.5.1 dated 2014-02-21 and 1.5.2 dated 2015-12-16

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 NAMESPACE                   |   25 +
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 R/aide3.r                   |    2 
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 21 files changed, 1223 insertions(+), 1132 deletions(-)

More information about TTAinterfaceTrendAnalysis at CRAN
Permanent link

New package rebus.datetimes with initial version 0.0-1
Package: rebus.datetimes
Title: Date and Time Extensions for the 'rebus' Package
Version: 0.0-1
Date: 2015-12-16
Author: Richard Cotton [aut, cre]
Maintainer: Richard Cotton <richierocks@gmail.com>
Authors@R: person("Richard", "Cotton", role = c("aut", "cre"), email = "richierocks@gmail.com")
Description: Build regular expressions piece by piece using human readable code. This package contains date and time functionality, and is primarily intended to be used by package developers.
Depends: R (>= 3.1.0)
Imports: rebus.base
Suggests: stats, testthat
License: Unlimited
LazyData: true
RoxygenNote: 5.0.1
Collate: 'imports.R' 'datetime-constants.R' 'datetime.R' 'iso-classes.R'
NeedsCompilation: no
Packaged: 2015-12-16 07:02:54 UTC; rjc2003
Repository: CRAN
Date/Publication: 2015-12-16 09:36:53

More information about rebus.datetimes at CRAN
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Package BRugs updated to version 0.8-6 with previous version 0.8-5 dated 2015-07-29

Title: Interface to the 'OpenBUGS' MCMC Software
Description: Fully-interactive R interface to the 'OpenBUGS' software for Bayesian analysis using MCMC sampling. Runs natively and stably in 32-bit R under Windows. Versions running on Linux and on 64-bit R under Windows are in "beta" status and less efficient.
Author: OpenBUGS was developed by Andrew Thomas, Dave Lunn, David Spiegelhalter and Nicky Best. R interface developed by Uwe Ligges, Sibylle Sturtz, Andrew Gelman, Gregor Gorjanc and Chris Jackson. Linux port and most recent developments by Chris Jackson.
Maintainer: Uwe Ligges <ligges@statistik.tu-dortmund.de>

Diff between BRugs versions 0.8-5 dated 2015-07-29 and 0.8-6 dated 2015-12-16

 DESCRIPTION              |    8 ++++----
 MD5                      |   14 +++++++-------
 NEWS                     |    4 ++++
 data/ratsdata.RData      |binary
 data/ratsinits.RData     |binary
 src/Makefile.win         |   14 +++++++-------
 tests/examples.R         |   10 ++++++----
 tests/examples.Rout.save |   12 ++++++------
 8 files changed, 34 insertions(+), 28 deletions(-)

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Package RcppArmadillo updated to version 0.6.400.2.2 with previous version 0.6.300.2.2 dated 2015-12-13

Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad Sanderson) that aims towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions. Various matrix decompositions are provided through optional integration with LAPACK and ATLAS libraries. The 'RcppArmadillo' package includes the header files from the templated 'Armadillo' library. Thus users do not need to install 'Armadillo' itself in order to use 'RcppArmadillo'. 'Armadillo' is licensed under the MPL 2.0, while 'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.
Author: Dirk Eddelbuettel, Romain Francois and Doug Bates
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between RcppArmadillo versions 0.6.300.2.2 dated 2015-12-13 and 0.6.400.2.2 dated 2015-12-16

 ChangeLog                                           |  227 ++++++++++----------
 DESCRIPTION                                         |    8 
 MD5                                                 |   48 ++--
 inst/NEWS.Rd                                        |   12 +
 inst/doc/RcppArmadillo-intro.pdf                    |binary
 inst/doc/RcppArmadillo-unitTests.pdf                |binary
 inst/include/armadillo                              |    1 
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 inst/include/armadillo_bits/Cube_meat.hpp           |   73 ++++++
 inst/include/armadillo_bits/Mat_bones.hpp           |   12 +
 inst/include/armadillo_bits/Mat_meat.hpp            |  170 ++++++++++++++
 inst/include/armadillo_bits/arma_rng_cxx11.hpp      |    4 
 inst/include/armadillo_bits/arma_version.hpp        |    6 
 inst/include/armadillo_bits/auxlib_meat.hpp         |   39 ++-
 inst/include/armadillo_bits/compiler_setup.hpp      |    1 
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 inst/include/armadillo_bits/field_meat.hpp          |  109 +++++++--
 inst/include/armadillo_bits/fn_misc.hpp             |   70 ++++++
 inst/include/armadillo_bits/gmm_diag_meat.hpp       |    2 
 inst/include/armadillo_bits/subview_bones.hpp       |   10 
 inst/include/armadillo_bits/subview_cube_bones.hpp  |    7 
 inst/include/armadillo_bits/subview_cube_meat.hpp   |   84 +++++++
 inst/include/armadillo_bits/subview_field_bones.hpp |    1 
 inst/include/armadillo_bits/subview_field_meat.hpp  |   31 ++
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 25 files changed, 936 insertions(+), 202 deletions(-)

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New package uniah with initial version 0.2
Package: uniah
Title: Unimodal Additive Hazards Model
Type: Package
Version: 0.2
Date: 2015-12-15
Author: Yunro Chung [cre], Anastasia Ivanova, Michael G. Hudgens and Jason P. Fine
Maintainer: Yunro Chung <yunro@live.unc.edu>
Description: Nonparametric estimation of a unimodal or U-shape covariate effect under additive hazards model.
Depends: R (>= 3.0.2), Iso, ahaz, survival
License: GPL (>= 2)
Packaged: 2015-12-16 04:11:42 UTC; roy
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-12-16 06:31:47

More information about uniah at CRAN
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New package rebus.base with initial version 0.0-1
Package: rebus.base
Title: Core Functionality for the 'rebus' Package
Version: 0.0-1
Date: 2015-12-16
Author: Richard Cotton [aut, cre]
Maintainer: Richard Cotton <richierocks@gmail.com>
Authors@R: person("Richard", "Cotton", role = c("aut", "cre"), email = "richierocks@gmail.com")
Description: Build regular expressions piece by piece using human readable code. This package contains core functionality, and is primarily intended to be used by package developers.
Depends: R (>= 3.1.0)
Imports: stats
Suggests: stringi, testthat
License: Unlimited
LazyData: true
RoxygenNote: 5.0.1
Collate: 'alternation.R' 'regex-methods.R' 'backreferences.R' 'capture.R' 'internal.R' 'grouping-and-repetition.R' 'constants.R' 'class-groups.R' 'concatenation.R' 'compound-constants.R' 'escape_special.R' 'lookaround.R' 'misc.R' 'mode-modifiers.R'
NeedsCompilation: no
Packaged: 2015-12-16 04:36:07 UTC; rjc2003
Repository: CRAN
Date/Publication: 2015-12-16 06:31:42

More information about rebus.base at CRAN
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Package pamm updated to version 0.9 with previous version 0.7 dated 2010-05-26

Title: Power Analysis for Random Effects in Mixed Models
Description: Simulation functions to assess or explore the power of a dataset to estimates significant random effects (intercept or slope) in a mixed model. The functions are based on the "lme4" package.
Author: Julien Martin [aut, cre]
Maintainer: Julien Martin <julienmartin@abdn.ac.uk>

Diff between pamm versions 0.7 dated 2010-05-26 and 0.9 dated 2015-12-16

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 17 files changed, 1006 insertions(+), 673 deletions(-)

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Package calACS updated to version 1.1 with previous version 0.2 dated 2015-11-15

Title: Count All Common Subsequences
Description: Count all common subsequences between 2 string sequences, with items separated by the same delimiter. The first string input is a length- one vector, the second string input can be a vector or list containing multiple strings. The algorithm differentiates between the more strict definition of subsequence, where a common subsequence cannot be separated by any other items, from its looser counterpart, where a common subsequence can be interrupted by other items. For example, q-w is a common subsequence of q-w-e-r and q-e-w-r on the looser definition, but not the more strict definition. calACSLoose Algorithm from Wang, H. All common subsequences (2007) IJCAI International Joint Conference on Artificial Intelligence, pp. 635-640.
Author: Alan Gu
Maintainer: Alan Gu <alan.on.ca@gmail.com>

Diff between calACS versions 0.2 dated 2015-11-15 and 1.1 dated 2015-12-16

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 calACS-1.1/calACS/NAMESPACE                           |    6 ++--
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