Title: Variational Bayes Latent Position Cluster Model for Networks
Description: Fit and simulate latent position and cluster
models for network data, using a fast Variational Bayes approximation.
Author: Michael Salter-Townshend
Maintainer: Michael Salter-Townshend <mike.saltertownshend@gmail.com>
Diff between VBLPCM versions 2.4.3 dated 2014-03-07 and 2.4.4 dated 2015-12-18
CHANGELOG | 5 DESCRIPTION | 20 MD5 | 16 NAMESPACE | 14 configure | 1107 ++++---------------------------------------------- configure.ac | 26 - man/VBLPCM-package.Rd | 55 -- man/gof.vblpcm.Rd | 6 man/vblpcmBIC.Rd | 7 9 files changed, 141 insertions(+), 1115 deletions(-)
Title: A More Scalable Alternative to Venn and Euler Diagrams for
Visualizing Intersecting Sets
Description: Creates visualizations of intersecting sets using a novel matrix
design, along with visualizations of several common set, element and attribute
related tasks.
Author: Jake Conway [cre],
Nils Gehlenborg [aut]
Maintainer: Jake Conway <jake_conway@student.uml.edu>
Diff between UpSetR versions 1.0.1 dated 2015-12-17 and 1.0.2 dated 2015-12-18
DESCRIPTION | 16 ++++++++-------- MD5 | 34 +++++++++++++++++----------------- NAMESPACE | 11 +++++++++-- NEWS | 6 ++++++ R/UpSet.plot.R | 9 +++++++++ R/upset.R | 3 +-- inst/doc/attribute.plots.html | 6 +++--- inst/doc/basic.usage.R | 13 +++++++++++++ inst/doc/basic.usage.Rmd | 17 +++++++++++++++++ inst/doc/basic.usage.html | 21 +++++++++++++++++++-- inst/doc/queries.html | 8 ++++---- man/elements.Rd | 2 +- man/fromExpression.Rd | 2 +- man/fromList.Rd | 2 +- man/histogram.Rd | 2 +- man/intersects.Rd | 2 +- man/scatter_plot.Rd | 2 +- man/upset.Rd | 2 +- 18 files changed, 113 insertions(+), 45 deletions(-)
Title: Spatial Forecast Verification
Description: Spatial forecast verification arose from verifying high-resolution forecasts, where coarser-resolution models generally are favored even when a human forecaster finds the higher-resolution model to be considerably better. Most newly proposed methods, which largely come from image analysis, computer vision, and similar, are available, with more on the way.
Author: Eric Gilleland <EricG@ucar.edu>
Maintainer: Eric Gilleland <EricG@ucar.edu>
Diff between SpatialVx versions 0.2-4 dated 2015-06-01 and 0.3 dated 2015-12-18
SpatialVx-0.2-4/SpatialVx/man/convthresh.Rd |only SpatialVx-0.3/SpatialVx/DESCRIPTION | 8 SpatialVx-0.3/SpatialVx/MD5 | 43 +- SpatialVx-0.3/SpatialVx/NAMESPACE | 14 SpatialVx-0.3/SpatialVx/R/FeatureFinder.R |only SpatialVx-0.3/SpatialVx/R/Features.R | 365 +++++--------------- SpatialVx-0.3/SpatialVx/R/Vgrams.R | 180 +++++++-- SpatialVx-0.3/SpatialVx/man/FeatureAxis.Rd | 4 SpatialVx-0.3/SpatialVx/man/FeatureFinder.Rd |only SpatialVx-0.3/SpatialVx/man/FeatureMatchAnalyzer.Rd | 6 SpatialVx-0.3/SpatialVx/man/FeatureProps.Rd | 2 SpatialVx-0.3/SpatialVx/man/FeatureTable.Rd | 2 SpatialVx-0.3/SpatialVx/man/MergeForce.Rd | 8 SpatialVx-0.3/SpatialVx/man/SpatialVx-internal.Rd | 1 SpatialVx-0.3/SpatialVx/man/SpatialVx-package.Rd | 2 SpatialVx-0.3/SpatialVx/man/combiner.Rd | 2 SpatialVx-0.3/SpatialVx/man/compositer.Rd | 6 SpatialVx-0.3/SpatialVx/man/craer.Rd | 10 SpatialVx-0.3/SpatialVx/man/deltamm.Rd | 10 SpatialVx-0.3/SpatialVx/man/disjointer.Rd |only SpatialVx-0.3/SpatialVx/man/expvg.Rd |only SpatialVx-0.3/SpatialVx/man/hiw.Rd | 6 SpatialVx-0.3/SpatialVx/man/interester.Rd | 6 SpatialVx-0.3/SpatialVx/man/saller.Rd | 6 SpatialVx-0.3/SpatialVx/man/spatMLD.Rd | 13 25 files changed, 326 insertions(+), 368 deletions(-)
Title: Spherical Trigonometry
Description: Spherical trigonometry for geographic applications. That is, compute distances and related measures for angular (longitude/latitude) locations.
Author: Robert J. Hijmans [cre, aut],
Ed Williams [ctb],
Chris Vennes [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between geosphere versions 1.4-3 dated 2015-07-01 and 1.5-1 dated 2015-12-18
ChangeLog | 9 ++++++-- DESCRIPTION | 8 +++---- MD5 | 22 ++++++++++----------- R/antipodal.R | 4 ++- R/centroid.R | 7 +++--- R/gcLon.R | 11 ++++------ R/gcMaxLat.R | 48 +++++++++++++++++++++++++++-------------------- R/onGreatCircle.R | 6 ++--- inst/doc/geosphere.pdf |binary man/gcMaxLat.Rd | 2 - man/geosphere-package.Rd | 2 - man/onGreatCircle.Rd | 5 ++-- 12 files changed, 70 insertions(+), 54 deletions(-)
Title: Direct Labels for Multicolor Plots
Description: An extensible framework
for automatically placing direct labels onto multicolor lattice or
ggplot2 plots.
Label positions are described using Positioning Methods
which can be re-used across several different plots.
There are heuristics for examining "trellis" and "ggplot" objects
and inferring an appropriate Positioning Method.
Author: Toby Dylan Hocking
Maintainer: Toby Dylan Hocking <tdhock5@gmail.com>
Diff between directlabels versions 2013.6.15 dated 2013-07-22 and 2015.12.16 dated 2015-12-18
DESCRIPTION | 18 - MD5 | 100 ++++---- NAMESPACE | 6 NEWS | 72 +++++ R/compare.R | 44 ++- R/doc.R | 10 R/ggplot2.R | 370 +++++++++++++++++++++-------- R/lattice.R | 40 +-- R/lineplot.R | 11 R/positioning.functions.R | 57 +++- R/utility.function.R | 408 +++++++++++++++++++++------------ data/projectionSeconds.RData |only man/GeomDl.Rd |only man/ahull.grid.Rd | 2 man/angled.boxes.Rd |only man/angled.endpoints.Rd | 2 man/apply.method.Rd | 65 +++-- man/big.boxes.Rd | 2 man/chull.grid.Rd | 2 man/direct.label.Rd | 20 - man/direct.label.ggplot.Rd | 3 man/direct.label.trellis.Rd | 3 man/directlabels-package.Rd | 2 man/dl.combine.Rd | 27 +- man/dl.move.Rd | 26 +- man/dlcompare.Rd | 43 ++- man/dlgrob.Rd | 3 man/draw.polygons.Rd |only man/drawDetails.dlgrob.Rd | 20 + man/extreme.grid.Rd | 2 man/far.from.others.borders.Rd |only man/first.bumpup.Rd | 2 man/first.polygons.Rd |only man/first.qp.Rd | 2 man/geom_dl.Rd | 122 +++++---- man/getLegendVariables.Rd |only man/iris.l1.cluster.Rd | 13 - man/lasso.labels.Rd | 2 man/last.bumpup.Rd | 2 man/last.polygons.Rd |only man/last.qp.Rd | 2 man/lattice.translators.Rd | 2 man/legends2hide.Rd |only man/maxvar.qp.Rd | 2 man/merge_recurse.Rd |only man/normal.l2.cluster.Rd | 15 - man/panel.superpose.dl.Rd | 16 - man/pkgFun.Rd |only man/polygon.method.Rd |only man/positioning.functions.Rd | 13 + man/projectionSeconds.Rd |only man/qp.labels.Rd | 26 -- man/reduce.cex.lr.Rd | 18 - man/smart.grid.Rd | 2 man/top.bumpup.Rd | 2 man/top.qp.Rd | 2 tests/doc/lineplot/projectionSeconds.R |only tests/ggplot.R |only tests/unattached.R |only 59 files changed, 1052 insertions(+), 549 deletions(-)
Title: A Computational Tool for Astrochronology
Description: Routines for astrochronologic testing, astronomical time scale construction, and time series analysis. Also included are a range of statistical analysis and modeling routines that are relevant to time scale development and paleoclimate analysis.
Author: Stephen Meyers
Maintainer: Stephen Meyers <smeyers@geology.wisc.edu>
Diff between astrochron versions 0.4.3 dated 2015-07-01 and 0.5 dated 2015-12-18
astrochron-0.4.3/astrochron/R/FUNCTION-arcsinT_v4.R |only astrochron-0.4.3/astrochron/R/FUNCTION-bandpass_v13.R |only astrochron-0.4.3/astrochron/R/FUNCTION-cosTaper_v8.R |only astrochron-0.4.3/astrochron/R/FUNCTION-dpssTaper_v2.R |only astrochron-0.4.3/astrochron/R/FUNCTION-eha_v17.R |only astrochron-0.4.3/astrochron/R/FUNCTION-gausTaper_v7.R |only astrochron-0.4.3/astrochron/R/FUNCTION-hannTaper_v2.R |only astrochron-0.4.3/astrochron/R/FUNCTION-hilbert_v14.R |only astrochron-0.4.3/astrochron/R/FUNCTION-linterp_v7.R |only astrochron-0.4.3/astrochron/R/FUNCTION-logT_v4.R |only astrochron-0.4.3/astrochron/R/FUNCTION-lowpass_v10.R |only astrochron-0.4.3/astrochron/R/FUNCTION-lowspec_v16.R |only astrochron-0.4.3/astrochron/R/FUNCTION-mtmAR_v6.R |only astrochron-0.4.3/astrochron/R/FUNCTION-mtmML96_v8.R |only astrochron-0.4.3/astrochron/R/FUNCTION-mtm_v13.R |only astrochron-0.4.3/astrochron/R/FUNCTION-pad.R |only astrochron-0.4.3/astrochron/R/FUNCTION-peak_v5.R |only astrochron-0.4.3/astrochron/R/FUNCTION-periodogram_v12.R |only astrochron-0.4.3/astrochron/R/FUNCTION-prewhiteAR1_v3.R |only astrochron-0.4.3/astrochron/R/FUNCTION-prewhiteAR_v4.R |only astrochron-0.4.3/astrochron/R/FUNCTION-rankSeries.R |only astrochron-0.4.3/astrochron/R/FUNCTION-readMatrix_v3.R |only astrochron-0.4.3/astrochron/R/FUNCTION-read_v23.R |only astrochron-0.4.3/astrochron/R/FUNCTION-stepHeat_v3.R |only astrochron-0.4.3/astrochron/R/FUNCTION-strats_v10.R |only astrochron-0.4.3/astrochron/R/FUNCTION-taner_v5.R |only astrochron-0.4.3/astrochron/R/FUNCTION-testPrecession.R |only astrochron-0.4.3/astrochron/R/FUNCTION-trackFreq_v7.R |only astrochron-0.4.3/astrochron/R/FUNCTION-trim_v3.R |only astrochron-0.4.3/astrochron/R/FUNCTION-trough.R |only astrochron-0.4.3/astrochron/R/FUNCTION-wtMean_v11.R |only astrochron-0.5/astrochron/DESCRIPTION | 8 - astrochron-0.5/astrochron/MD5 | 120 +++++++-------- astrochron-0.5/astrochron/NAMESPACE | 3 astrochron-0.5/astrochron/R/FUNCTION-arcsinT_v5.R |only astrochron-0.5/astrochron/R/FUNCTION-bandpass_v14.R |only astrochron-0.5/astrochron/R/FUNCTION-cosTaper_v9.R |only astrochron-0.5/astrochron/R/FUNCTION-dpssTaper_v3.R |only astrochron-0.5/astrochron/R/FUNCTION-eha_v18.R |only astrochron-0.5/astrochron/R/FUNCTION-gausTaper_v8.R |only astrochron-0.5/astrochron/R/FUNCTION-getData.R |only astrochron-0.5/astrochron/R/FUNCTION-hannTaper_v3.R |only astrochron-0.5/astrochron/R/FUNCTION-hilbert_v15.R |only astrochron-0.5/astrochron/R/FUNCTION-linterp_v8.R |only astrochron-0.5/astrochron/R/FUNCTION-logT_v5.R |only astrochron-0.5/astrochron/R/FUNCTION-lowpass_v11.R |only astrochron-0.5/astrochron/R/FUNCTION-lowspec_v17.R |only astrochron-0.5/astrochron/R/FUNCTION-mtmAR_v7.R |only astrochron-0.5/astrochron/R/FUNCTION-mtmML96_v10.R |only astrochron-0.5/astrochron/R/FUNCTION-mtm_v15.R |only astrochron-0.5/astrochron/R/FUNCTION-pad_v2.R |only astrochron-0.5/astrochron/R/FUNCTION-peak_v6.R |only astrochron-0.5/astrochron/R/FUNCTION-periodogram_v13.R |only astrochron-0.5/astrochron/R/FUNCTION-prewhiteAR1_v4.R |only astrochron-0.5/astrochron/R/FUNCTION-prewhiteAR_v5.R |only astrochron-0.5/astrochron/R/FUNCTION-rankSeries_v2.R |only astrochron-0.5/astrochron/R/FUNCTION-readMatrix_v6.R |only astrochron-0.5/astrochron/R/FUNCTION-read_v27.R |only astrochron-0.5/astrochron/R/FUNCTION-stepHeat_v4.R |only astrochron-0.5/astrochron/R/FUNCTION-strats_v12.R |only astrochron-0.5/astrochron/R/FUNCTION-taner_v7.R |only astrochron-0.5/astrochron/R/FUNCTION-testPrecession_v2.R |only astrochron-0.5/astrochron/R/FUNCTION-timeOptSim_v5c.R |only astrochron-0.5/astrochron/R/FUNCTION-timeOpt_v5c.R |only astrochron-0.5/astrochron/R/FUNCTION-trackFreq_v8.R |only astrochron-0.5/astrochron/R/FUNCTION-trim_v4.R |only astrochron-0.5/astrochron/R/FUNCTION-trough_v2.R |only astrochron-0.5/astrochron/R/FUNCTION-wtMean_v12.R |only astrochron-0.5/astrochron/data/modelA.rda |binary astrochron-0.5/astrochron/inst/CITATION | 2 astrochron-0.5/astrochron/man/ar1.Rd | 2 astrochron-0.5/astrochron/man/arcsinT.Rd | 4 astrochron-0.5/astrochron/man/asm.Rd | 2 astrochron-0.5/astrochron/man/astrochron-package.Rd | 18 +- astrochron-0.5/astrochron/man/eAsm.Rd | 6 astrochron-0.5/astrochron/man/eAsmTrack.Rd | 8 - astrochron-0.5/astrochron/man/eha.Rd | 8 - astrochron-0.5/astrochron/man/getData.Rd |only astrochron-0.5/astrochron/man/logT.Rd | 4 astrochron-0.5/astrochron/man/lowpass.Rd | 2 astrochron-0.5/astrochron/man/lowspec.Rd | 8 - astrochron-0.5/astrochron/man/mtm.Rd | 10 - astrochron-0.5/astrochron/man/mtmAR.Rd | 2 astrochron-0.5/astrochron/man/mtmML96.Rd | 10 - astrochron-0.5/astrochron/man/rankSeries.Rd | 2 astrochron-0.5/astrochron/man/read.Rd | 5 astrochron-0.5/astrochron/man/readMatrix.Rd | 3 astrochron-0.5/astrochron/man/stepHeat.Rd | 19 +- astrochron-0.5/astrochron/man/strats.Rd | 2 astrochron-0.5/astrochron/man/taner.Rd | 15 - astrochron-0.5/astrochron/man/testPrecession.Rd | 7 astrochron-0.5/astrochron/man/timeOpt.Rd |only astrochron-0.5/astrochron/man/timeOptSim.Rd |only astrochron-0.5/astrochron/man/trackFreq.Rd | 4 astrochron-0.5/astrochron/man/wtMean.Rd | 16 +- 95 files changed, 162 insertions(+), 128 deletions(-)
Title: Pathwise Calibrated Sparse Shooting Algorithm
Description: Implements the pathwise calibrated sparse shooting algorithm (PICASSO) for high dimensional regularized sparse linear regression, sparse logistic regression, and sparse undirected graphical model estimation. As a pathwise coordinate optimization algorithm, PICASSO exploits warm start initialization, active set updating, and strong rule for coordinate preselection to boost computation, and attains a linear convergence to a unique sparse local optimum with optimal statistical properties. Moreover, users can choose different regularizers, including L1, MCP, and SCAD regularizers. The computation is memory-optimized using the sparse matrix output.
Author: Xingguo Li, Tuo Zhao, Tong Zhang and Han Liu
Maintainer: Xingguo Li <xingguo.leo@gmail.com>
Diff between picasso versions 0.4.7 dated 2015-09-15 and 0.5.0 dated 2015-12-18
DESCRIPTION | 14 - MD5 | 50 ++-- NAMESPACE | 2 R/lasso.sc.naive.R | 114 +++++------ R/picasso.R | 5 R/picasso.lasso.R | 498 ++++++++++++++++++++++++------------------------- build |only inst |only man/coef.lasso.Rd | 2 man/coef.logit.Rd | 2 man/eyedata.Rd | 2 man/picasso-package.Rd | 6 man/picasso.Rd | 11 - man/plot.lasso.Rd | 2 man/plot.logit.Rd | 2 man/plot.scio.Rd | 2 man/plot.sim.Rd | 2 man/predict.lasso.Rd | 2 man/predict.logit.Rd | 2 man/print.lasso.Rd | 2 man/print.logit.Rd | 2 man/print.scio.Rd | 2 man/print.sim.Rd | 2 man/scio.generator.Rd | 2 man/scio.plot.Rd | 2 vignettes |only 26 files changed, 370 insertions(+), 360 deletions(-)
Title: Principal Component Analysis for Outlier Detection
Description: Methods to detect genetic markers involved in biological
adaptation. 'pcadapt' provides statistical tools for outlier detection based on
Principal Component Analysis.
Author: Keurcien Luu, Michael G.B. Blum
Maintainer: Keurcien Luu <keurcien.luu@imag.fr>
Diff between pcadapt versions 2.0.1 dated 2015-11-09 and 2.1 dated 2015-12-18
DESCRIPTION | 13 MD5 | 48 +- NAMESPACE | 2 R/pcadapt.R | 69 ++-- R/plotting.R | 11 build/vignette.rds |binary inst/doc/pcadapt.Rmd | 42 ++ inst/doc/pcadapt.html | 733 ++++++++++++++++++++++++++++++++------------- man/computeStats.Rd | 3 man/corpca.Rd | 13 man/fstCalc.Rd | 5 man/fstGeno.Rd | 3 man/getPopColors.Rd | 5 man/manhattanPlot.Rd | 3 man/neutralDistribution.Rd | 3 man/pcadapt-package.Rd | 4 man/pcadapt.Rd | 15 man/plot.pcadapt.Rd | 7 man/pval.Rd | 3 man/pvalqqPlot.Rd | 3 man/read.genotype.Rd | 2 man/read4pcadapt.Rd | 5 man/scoresPlot.Rd | 7 man/screePlot.Rd | 5 vignettes/pcadapt.Rmd | 42 ++ 25 files changed, 715 insertions(+), 331 deletions(-)
Title: Tools to Evaluate DNA Profile Evidence
Description: Tools to determine DNA profile Weight of Evidence.
For further information see the likeLTD guide provided,
or the paper under citation.
Author: David Balding, Adrian Timpson, Christopher Steele, Mayeul d'Avezac, James Hetherington.
Maintainer: Christopher Steele <c.steele.11@ucl.ac.uk>
Diff between likeLTD versions 6.0.0 dated 2015-12-16 and 6.0.1 dated 2015-12-18
DESCRIPTION | 8 MD5 | 36 R/maximize.R | 2 R/objectives-peaks.R | 58 inst/doc/likeLTDguide.pdf |binary inst/doc/usage.pdf |binary man/defence.hypothesis.Rd | 2 man/load.allele.database.Rd | 2 man/optimisation.params.Rd | 2 man/pack.admin.input.Rd | 2 man/prosecution.hypothesis.Rd | 2 man/read.csp.profile.Rd | 2 man/read.known.profiles.Rd | 2 man/read.peaks.profile.Rd | 2 man/read.unc.profile.Rd | 2 src/gammaDist.cpp | 2 src/maximizePeaks.cpp | 3305 ++++++++++++++++++------------------------ src/maximizePeaks.h | 50 src/module.cpp | 1 19 files changed, 1537 insertions(+), 1943 deletions(-)
Title: Auxiliary Functions for Phenological Data Analysis
Description: Provides some easy-to-use functions for
spatial analyses of (plant-) phenological data
sets and satellite observations of vegetation.
Author: Lange, Maximilian and Doktor, Daniel
Maintainer: Daniel Doktor <daniel.doktor@ufz.de>
Diff between phenex versions 1.0-7 dated 2014-02-11 and 1.1-9 dated 2015-12-18
phenex-1.0-7/phenex/man/bise.Rd |only phenex-1.1-9/phenex/DESCRIPTION | 14 +- phenex-1.1-9/phenex/INDEX | 3 phenex-1.1-9/phenex/MD5 | 28 ++-- phenex-1.1-9/phenex/NAMESPACE | 10 - phenex-1.1-9/phenex/R/analyzeBits.R | 10 + phenex-1.1-9/phenex/R/dLogistic.R | 2 phenex-1.1-9/phenex/R/modelNDVI.R | 39 ++++-- phenex-1.1-9/phenex/R/ndvi-class.R | 159 +++++++++++++++++++++++--- phenex-1.1-9/phenex/man/NDVI-class.Rd | 35 +++++ phenex-1.1-9/phenex/man/analyzeBits.Rd | 5 phenex-1.1-9/phenex/man/bise1.Rd |only phenex-1.1-9/phenex/man/bise2.Rd |only phenex-1.1-9/phenex/man/integrateTimeserie.Rd |only phenex-1.1-9/phenex/man/modelNDVI.Rd | 17 ++ phenex-1.1-9/phenex/src/analyzeBits.c | 17 ++ phenex-1.1-9/phenex/src/analyzeBits.h | 3 17 files changed, 276 insertions(+), 66 deletions(-)
Title: Direct, Chain and Average Equating Coefficients with Standard
Errors Using IRT Methods
Description: Computation of direct, chain and average (bisector) equating coefficients with standard errors using Item Response Theory (IRT) methods for dichotomous items.
Author: Michela Battauz
Maintainer: Michela Battauz <michela.battauz@uniud.it>
Diff between equateIRT versions 1.2-1 dated 2015-11-26 and 1.2-2 dated 2015-12-18
equateIRT-1.2-1/equateIRT/inst/doc/equateIRT5_JSS.R |only equateIRT-1.2-1/equateIRT/inst/doc/equateIRT5_JSS.Rnw |only equateIRT-1.2-1/equateIRT/inst/doc/equateIRT5_JSS.pdf |only equateIRT-1.2-1/equateIRT/vignettes/equateIRT5_JSS.Rnw |only equateIRT-1.2-1/equateIRT/vignettes/jsslogo.jpg |only equateIRT-1.2-2/equateIRT/DESCRIPTION | 8 equateIRT-1.2-2/equateIRT/MD5 | 36 - equateIRT-1.2-2/equateIRT/R/functions.r | 75 +- equateIRT-1.2-2/equateIRT/build/vignette.rds |binary equateIRT-1.2-2/equateIRT/inst/CITATION |only equateIRT-1.2-2/equateIRT/inst/NEWS | 9 equateIRT-1.2-2/equateIRT/inst/doc/equateIRT.R |only equateIRT-1.2-2/equateIRT/inst/doc/equateIRT.Rnw |only equateIRT-1.2-2/equateIRT/inst/doc/equateIRT.pdf |only equateIRT-1.2-2/equateIRT/man/alldirec.Rd | 16 equateIRT-1.2-2/equateIRT/man/bisectorec.Rd | 3 equateIRT-1.2-2/equateIRT/man/chainec.Rd | 7 equateIRT-1.2-2/equateIRT/man/convert.Rd | 7 equateIRT-1.2-2/equateIRT/man/direc.Rd | 7 equateIRT-1.2-2/equateIRT/man/equateIRT-package.Rd | 13 equateIRT-1.2-2/equateIRT/man/import.ltm.Rd | 3 equateIRT-1.2-2/equateIRT/man/modIRT.Rd | 11 equateIRT-1.2-2/equateIRT/vignettes/equateIRT.Rnw |only equateIRT-1.2-2/equateIRT/vignettes/equateIRT.bib | 478 ++++++++--------- 24 files changed, 360 insertions(+), 313 deletions(-)
Title: Configural Frequencies Analysis Using Log-Linear Modeling
Description: Offers several functions for Configural Frequencies
Analysis (CFA), which is a useful statistical tool for the analysis of
multiway contingency tables. CFA was introduced by G. A. Lienert as
'Konfigurations Frequenz Analyse - KFA'.
Author: Joerg-Henrik Heine, R.W. Alexandrowicz (function stirling_cfa() )
and intensive package testing by Mark Stemmler
Maintainer: Joerg-Henrik Heine <jhheine@googlemail.com>
Diff between confreq versions 1.3-1 dated 2015-05-01 and 1.4 dated 2015-12-18
DESCRIPTION | 11 +++--- MD5 | 50 +++++++++++++++-------------- NAMESPACE | 14 +++++++- NEWS | 12 +++++++ R/CFA.R | 76 +++++++++++++++++++++++++++------------------ R/binomial_test_cfa.R | 31 ++++++++---------- R/confreq-package.R | 11 ++++++ R/expected_margin_cfa.R |only R/summary.CFA.R | 10 ++++- man/CFA.Rd | 13 +++++-- man/S2CFA.Rd | 4 +- man/binomial_test_cfa.Rd | 11 ++---- man/chi_local_test_cfa.Rd | 4 +- man/confreq-package.Rd | 6 +-- man/dat2fre.Rd | 8 ++-- man/design_cfg_cfa.Rd | 4 +- man/df_des_cfa.Rd | 11 ++---- man/expected_cfa.Rd | 4 +- man/expected_margin_cfa.Rd |only man/fre2dat.Rd | 4 +- man/ftab.Rd | 2 - man/lr.Rd | 3 + man/pos_cfg_cfa.Rd | 4 +- man/stirling_cfa.Rd | 4 +- man/summary.CFA.Rd | 6 ++- man/summary.S2CFA.Rd | 2 - man/z_tests_cfa.Rd | 4 +- 27 files changed, 184 insertions(+), 125 deletions(-)
Title: Attaches and Installs Packages
Description: A simple function for easier package loading and auto-installation.
Author: Josh Katz [aut, cre]
Maintainer: Josh Katz <josh.katz@nytimes.com>
Diff between needs versions 0.0.1 dated 2015-12-15 and 0.0.2 dated 2015-12-18
DESCRIPTION | 6 +++--- MD5 | 4 ++-- inst/extdata/promptUser | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Harrell Miscellaneous
Description: Contains many functions useful for data
analysis, high-level graphics, utility operations, functions for
computing sample size and power, importing and annotating datasets,
imputing missing values, advanced table making, variable clustering,
character string manipulation, conversion of R objects to LaTeX code,
and recoding variables.
Author: Frank E Harrell Jr <f.harrell@vanderbilt.edu>, with
contributions from Charles Dupont and many others.
Maintainer: Frank E Harrell Jr <f.harrell@vanderbilt.edu>
Diff between Hmisc versions 3.17-0 dated 2015-09-21 and 3.17-1 dated 2015-12-18
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Title: Download and Process GIMMS NDVI3g Data
Description: We provide a set of functions to retrieve information about GIMMS
NDVI3g files currently available online; download and re-arrange the bi-monthly
datasets according to creation time; import downloaded files from native binary
(ENVI) format directly into R based on the widely applied 'raster' package;
calculate monthly value composites (e.g. maximum value composites, MVC) from the
bi-monthly input data; and derive long-term monotonous trends from the
Mann-Kendall trend test, optionally featuring pre-whitening to
account for lag-1 autocorrelation.
Author: Florian Detsch [cre, aut]
Maintainer: Florian Detsch <admin@environmentalinformatics-marburg.de>
Diff between gimms versions 0.3.0 dated 2015-11-13 and 0.4.0 dated 2015-12-18
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Title: An Implementation of the Grammar of Graphics
Description: An implementation of the grammar of graphics in R. It combines the
advantages of both base and lattice graphics: conditioning and shared axes
are handled automatically, and you can still build up a plot step by step
from multiple data sources. It also implements a sophisticated
multidimensional conditioning system and a consistent interface to map
data to aesthetic attributes. See http://ggplot2.org for more information,
documentation and examples.
Author: Hadley Wickham [aut, cre],
Winston Chang [aut],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between ggplot2 versions 1.0.1 dated 2015-03-17 and 2.0.0 dated 2015-12-18
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Title: Cause-Specific Framework for Competing-Risk Analysis
Description: Numerical integration of cause-specific survival curves to arrive at cause-specific cumulative incidence functions,
with three usage modes: 1) Convenient API for parametric survival regression followed by competing-risk analysis, 2) API for
CFC, accepting user-specified survival functions in R, and 3) Same as 2, but accepting survival functions in C++.
Author: Mansour T.A. Sharabiani, Alireza S. Mahani
Maintainer: Alireza S. Mahani <alireza.s.mahani@gmail.com>
Diff between CFC versions 0.7.0 dated 2015-03-12 and 1.0.0 dated 2015-12-18
ChangeLog |only DESCRIPTION | 22 +- MD5 | 33 ++- NAMESPACE | 37 ++- R/RcppExports.R |only R/cfc.R | 435 ++++++++++++++++++++------------------------ R/cfc_legacy.R |only R/cfc_survreg.R |only R/zzz.R | 2 build |only inst |only man/cfc.Rd |only man/cfc.prepdata.Rd |only man/cfc.survreg.Rd |only man/cfc.survreg.survprob.Rd |only man/cfc.tbasis.Rd | 166 ++++++++-------- man/summary.cfc.survreg.Rd |only man/summary.cfc.tbasis.Rd | 78 +++---- src |only vignettes |only 20 files changed, 388 insertions(+), 385 deletions(-)
Title: Identifiability of Linear Structural Equation Models
Description: Provides routines to check identifiability or non-identifiability
of linear structural equation models as described in Drton, Foygel &
Sullivant (Ann. Statist., 2011) and Foygel, Draisma & Drton (Ann. Statist.,
2012). The routines are based on the graphical representation of
structural equation models by a path diagram/mixed graph.
Author: Rina Foygel Barber <rina@uchicago.edu>, Mathias Drton <md5@uw.edu>, Luca
Weihs <lucaw@uw.edu>.
Maintainer: Mathias Drton <md5@uw.edu>
Diff between SEMID versions 0.1 dated 2013-08-16 and 0.2 dated 2015-12-18
SEMID-0.1/SEMID/INDEX |only SEMID-0.2/SEMID/DESCRIPTION | 21 SEMID-0.2/SEMID/MD5 | 38 SEMID-0.2/SEMID/NAMESPACE | 9 SEMID-0.2/SEMID/R/SEMID.R |only SEMID-0.2/SEMID/R/graphID.R | 1166 ++++++++++++++++++++--------- SEMID-0.2/SEMID/README.md |only SEMID-0.2/SEMID/demo/SEMID.R | 3 SEMID-0.2/SEMID/man/SEMID-package.Rd |only SEMID-0.2/SEMID/man/ancestors.Rd |only SEMID-0.2/SEMID/man/descendants.Rd |only SEMID-0.2/SEMID/man/getMaxFlow.Rd |only SEMID-0.2/SEMID/man/getMixedCompForNode.Rd |only SEMID-0.2/SEMID/man/graphID.Rd | 91 +- SEMID-0.2/SEMID/man/graphID.ancestralID.Rd |only SEMID-0.2/SEMID/man/graphID.decompose.Rd |only SEMID-0.2/SEMID/man/graphID.genericID.Rd |only SEMID-0.2/SEMID/man/graphID.globalID.Rd |only SEMID-0.2/SEMID/man/graphID.htcID.Rd |only SEMID-0.2/SEMID/man/graphID.main.Rd |only SEMID-0.2/SEMID/man/graphID.nonHtcID.Rd |only SEMID-0.2/SEMID/man/htr.Rd |only SEMID-0.2/SEMID/man/parents.Rd |only SEMID-0.2/SEMID/man/siblings.Rd |only SEMID-0.2/SEMID/man/validateMatrices.Rd |only SEMID-0.2/SEMID/tests |only 26 files changed, 940 insertions(+), 388 deletions(-)
Title: Lab for Developing and Testing Recommender Algorithms
Description: Provides a research infrastructure to test and develop
recommender algorithms.
Author: Michael Hahsler [aut, cre, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between recommenderlab versions 0.1-7 dated 2015-07-24 and 0.1-8 dated 2015-12-18
recommenderlab-0.1-7/recommenderlab/man/helper.Rd |only recommenderlab-0.1-8/recommenderlab/DESCRIPTION | 10 recommenderlab-0.1-8/recommenderlab/MD5 | 69 +- recommenderlab-0.1-8/recommenderlab/NAMESPACE | 4 recommenderlab-0.1-8/recommenderlab/R/AAA.R | 17 recommenderlab-0.1-8/recommenderlab/R/AAAparameter.R |only recommenderlab-0.1-8/recommenderlab/R/RECOM_IBCF.R | 32 - recommenderlab-0.1-8/recommenderlab/R/RECOM_PCA.R | 7 recommenderlab-0.1-8/recommenderlab/R/RECOM_POPULAR.R | 182 ++++--- recommenderlab-0.1-8/recommenderlab/R/RECOM_RANDOM.R | 74 +-- recommenderlab-0.1-8/recommenderlab/R/RECOM_SVD.R | 77 +-- recommenderlab-0.1-8/recommenderlab/R/RECOM_UBCF.R | 7 recommenderlab-0.1-8/recommenderlab/R/binaryRatingMatrix.R | 17 recommenderlab-0.1-8/recommenderlab/R/evaluate.R | 4 recommenderlab-0.1-8/recommenderlab/R/evaluationResults.R | 2 recommenderlab-0.1-8/recommenderlab/R/evaluationScheme.R | 13 recommenderlab-0.1-8/recommenderlab/R/normalize.R | 178 +++---- recommenderlab-0.1-8/recommenderlab/R/plot.R | 2 recommenderlab-0.1-8/recommenderlab/R/realRatingMatrix.R | 235 +++++----- recommenderlab-0.1-8/recommenderlab/R/topNList.R | 125 ++--- recommenderlab-0.1-8/recommenderlab/inst/NEWS | 16 recommenderlab-0.1-8/recommenderlab/inst/doc/recommenderlab.R | 118 ++--- recommenderlab-0.1-8/recommenderlab/inst/doc/recommenderlab.Rnw | 108 +++- recommenderlab-0.1-8/recommenderlab/inst/doc/recommenderlab.pdf |binary recommenderlab-0.1-8/recommenderlab/man/Recommender.Rd | 5 recommenderlab-0.1-8/recommenderlab/man/binaryRatingMatrix-class.Rd | 3 recommenderlab-0.1-8/recommenderlab/man/evaluate.Rd | 26 - recommenderlab-0.1-8/recommenderlab/man/evaluationScheme.Rd | 7 recommenderlab-0.1-8/recommenderlab/man/ratingMatrix-class.Rd | 3 recommenderlab-0.1-8/recommenderlab/man/realRatingMatrix-class.Rd | 3 recommenderlab-0.1-8/recommenderlab/man/topNList-class.Rd | 3 recommenderlab-0.1-8/recommenderlab/tests/RECOM.R |only recommenderlab-0.1-8/recommenderlab/vignettes/item-based2.odg |binary recommenderlab-0.1-8/recommenderlab/vignettes/item-based2.pdf |binary recommenderlab-0.1-8/recommenderlab/vignettes/recommenderlab.Rnw | 108 +++- recommenderlab-0.1-8/recommenderlab/vignettes/user-based.odg |binary recommenderlab-0.1-8/recommenderlab/vignettes/user-based.pdf |binary 37 files changed, 788 insertions(+), 667 deletions(-)
More information about recommenderlab at CRAN
Permanent link
Title: High Frequency Portfolio Analytics by PortfolioEffect
Description: R interface to PortfolioEffect cloud service for backtesting
high frequency trading (HFT) strategies, intraday portfolio analysis
and optimization. Includes auto-calibrating model pipeline for market
microstructure noise, risk factors, price jumps/outliers, tail risk
(high-order moments) and price fractality (long memory). Constructed
portfolios could use client-side market data or access HF intraday price
history for all major US Equities. See https://www.portfolioeffect.com/
for more information on the PortfolioEffect high frequency portfolio
analytics platform.
Author: Aleksey Zemnitskiy [aut, cre],
Andrey Kostin [aut],
Oleg Nechaev [aut],
Craig Otis and others [ctb, cph] (OpenFAST library),
Daniel Lemire, Muraoka Taro and others [ctb, cph] (JavaFastPFOR
library),
Joe Walnes, Jorg Schaible and others [ctb, cph] (XStream library),
Dain Sundstrom [ctb, cph] (Snappy library),
Extreme! Lab, Indiana University [ctb, cph] (XPP3 library),
The Apache Software Foundation [ctb, cph] (Apache Log4j and Commons
Lang libraries),
Google, Inc. [ctb, cph] (GSON library),
Free Software Foundation [ctb, cph] (GNU Trove and GNU Crypto
libraries)
Maintainer: Aleksey Zemnitskiy <aleksey.zemnitskiy@portfolioeffect.com>
Diff between PortfolioEffectHFT versions 1.3 dated 2015-11-10 and 1.4 dated 2015-12-18
DESCRIPTION | 8 +- MD5 | 16 ++-- NEWS | 11 +++ R/plot.R | 2 R/portfolio.R | 85 ++++++------------------- R/util.R | 3 inst/doc/PortfolioEffectHFT.pdf |binary inst/java/portfolioeffect-quant-client-1.0.jar |binary man/portfolio_settings.Rd | 2 9 files changed, 50 insertions(+), 77 deletions(-)
More information about PortfolioEffectHFT at CRAN
Permanent link
Title: Programming with Big Data -- Interface to MPI
Description: An efficient interface to MPI by utilizing S4
classes and methods with a focus on Single Program/Multiple Data ('SPMD')
parallel programming style, which is intended for batch parallel
execution.
Author: Wei-Chen Chen [aut, cre],
George Ostrouchov [aut],
Drew Schmidt [aut],
Pragneshkumar Patel [aut],
Hao Yu [aut],
Christian Heckendorf [ctb] (FreeBSD),
Brian Ripley [ctb] (Windows HPC Pack 2012),
R Core team [ctb] (some functions are modified from the base packages)
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between pbdMPI versions 0.2-5 dated 2014-10-05 and 0.3-0 dated 2015-12-18
pbdMPI-0.2-5/pbdMPI/README |only pbdMPI-0.2-5/pbdMPI/data |only pbdMPI-0.2-5/pbdMPI/man/zz_internal.Rd |only pbdMPI-0.3-0/pbdMPI/ChangeLog | 51 + pbdMPI-0.3-0/pbdMPI/DESCRIPTION | 16 pbdMPI-0.3-0/pbdMPI/INSTALL | 10 pbdMPI-0.3-0/pbdMPI/MD5 | 335 +++++----- pbdMPI-0.3-0/pbdMPI/NAMESPACE | 14 pbdMPI-0.3-0/pbdMPI/R/000_globalVariables.r | 5 pbdMPI-0.3-0/pbdMPI/R/111_control.r |only pbdMPI-0.3-0/pbdMPI/R/111_control_io.r |only pbdMPI-0.3-0/pbdMPI/R/111_control_tp.r |only pbdMPI-0.3-0/pbdMPI/R/222_export_env.r |only pbdMPI-0.3-0/pbdMPI/R/api_apply.r | 11 pbdMPI-0.3-0/pbdMPI/R/api_apply_RC.r | 11 pbdMPI-0.3-0/pbdMPI/R/api_apply_general.r | 17 pbdMPI-0.3-0/pbdMPI/R/api_lapply.r | 16 pbdMPI-0.3-0/pbdMPI/R/api_sapply.r | 17 pbdMPI-0.3-0/pbdMPI/R/api_split.r | 22 pbdMPI-0.3-0/pbdMPI/R/api_task_pull.r | 21 pbdMPI-0.3-0/pbdMPI/R/api_tool.r | 15 pbdMPI-0.3-0/pbdMPI/R/comm_allcommon.r | 6 pbdMPI-0.3-0/pbdMPI/R/comm_allpairs.r | 2 pbdMPI-0.3-0/pbdMPI/R/comm_any_all.r | 4 pbdMPI-0.3-0/pbdMPI/R/comm_as_gbd.r | 5 pbdMPI-0.3-0/pbdMPI/R/comm_balance.r | 9 pbdMPI-0.3-0/pbdMPI/R/comm_base.r | 10 pbdMPI-0.3-0/pbdMPI/R/comm_dist.r | 6 pbdMPI-0.3-0/pbdMPI/R/comm_errors.r | 18 pbdMPI-0.3-0/pbdMPI/R/comm_matcharg.r |only pbdMPI-0.3-0/pbdMPI/R/comm_pairwise.r | 6 pbdMPI-0.3-0/pbdMPI/R/comm_range.r | 6 pbdMPI-0.3-0/pbdMPI/R/comm_read.r | 84 +- pbdMPI-0.3-0/pbdMPI/R/comm_seed.r | 35 - pbdMPI-0.3-0/pbdMPI/R/comm_sort.r | 8 pbdMPI-0.3-0/pbdMPI/R/comm_tool.r | 8 pbdMPI-0.3-0/pbdMPI/R/comm_which.r | 6 pbdMPI-0.3-0/pbdMPI/R/comm_write.r | 8 pbdMPI-0.3-0/pbdMPI/R/spmd_allcheck.r | 2 pbdMPI-0.3-0/pbdMPI/R/spmd_allgatherv.r | 18 pbdMPI-0.3-0/pbdMPI/R/spmd_allgatherv_obj.r | 4 pbdMPI-0.3-0/pbdMPI/R/spmd_allreduce.r | 14 pbdMPI-0.3-0/pbdMPI/R/spmd_allreduce_obj.r | 9 pbdMPI-0.3-0/pbdMPI/R/spmd_alltoall.r |only pbdMPI-0.3-0/pbdMPI/R/spmd_bcast.r | 19 pbdMPI-0.3-0/pbdMPI/R/spmd_bcast_obj.r | 21 pbdMPI-0.3-0/pbdMPI/R/spmd_communicator.r | 77 +- pbdMPI-0.3-0/pbdMPI/R/spmd_communicator_spawn.r | 5 pbdMPI-0.3-0/pbdMPI/R/spmd_gatherv.r | 29 pbdMPI-0.3-0/pbdMPI/R/spmd_gatherv_obj.r | 8 pbdMPI-0.3-0/pbdMPI/R/spmd_info.r | 8 pbdMPI-0.3-0/pbdMPI/R/spmd_irecv.r | 20 pbdMPI-0.3-0/pbdMPI/R/spmd_isend.r | 24 pbdMPI-0.3-0/pbdMPI/R/spmd_recv.r | 16 pbdMPI-0.3-0/pbdMPI/R/spmd_reduce.r | 18 pbdMPI-0.3-0/pbdMPI/R/spmd_reduce_obj.r | 8 pbdMPI-0.3-0/pbdMPI/R/spmd_scatterv.r | 21 pbdMPI-0.3-0/pbdMPI/R/spmd_scatterv_obj.r | 6 pbdMPI-0.3-0/pbdMPI/R/spmd_send.r | 12 pbdMPI-0.3-0/pbdMPI/R/spmd_sendrecv.r | 52 - pbdMPI-0.3-0/pbdMPI/R/spmd_sendrecv_replace.r | 56 - pbdMPI-0.3-0/pbdMPI/R/spmd_tool.r | 25 pbdMPI-0.3-0/pbdMPI/R/spmd_utility.r | 16 pbdMPI-0.3-0/pbdMPI/R/spmd_wait.r | 7 pbdMPI-0.3-0/pbdMPI/R/windows/zzz.r | 9 pbdMPI-0.3-0/pbdMPI/R/zzz.r.in | 16 pbdMPI-0.3-0/pbdMPI/README.md |only pbdMPI-0.3-0/pbdMPI/demo/00Index | 2 pbdMPI-0.3-0/pbdMPI/demo/alltoall.r |only pbdMPI-0.3-0/pbdMPI/demo/bcast_msg.r |only pbdMPI-0.3-0/pbdMPI/demo/pbdLapply.r | 7 pbdMPI-0.3-0/pbdMPI/demo/simple_io.r | 6 pbdMPI-0.3-0/pbdMPI/inst/CITATION | 8 pbdMPI-0.3-0/pbdMPI/inst/doc/pbdMPI-guide.Rnw | 27 pbdMPI-0.3-0/pbdMPI/inst/doc/pbdMPI-guide.pdf |binary pbdMPI-0.3-0/pbdMPI/inst/examples/test_cs/named.client.r | 4 pbdMPI-0.3-0/pbdMPI/inst/examples/test_cs/named.server.r | 4 pbdMPI-0.3-0/pbdMPI/inst/examples/test_cs/simple.client.r | 4 pbdMPI-0.3-0/pbdMPI/inst/examples/test_cs/simple.server.r | 4 pbdMPI-0.3-0/pbdMPI/inst/examples/test_long_vector/allgather.r | 2 pbdMPI-0.3-0/pbdMPI/inst/examples/test_long_vector/allreduce.r | 2 pbdMPI-0.3-0/pbdMPI/inst/examples/test_long_vector/bcast.r | 2 pbdMPI-0.3-0/pbdMPI/inst/examples/test_long_vector/gather.r | 2 pbdMPI-0.3-0/pbdMPI/inst/examples/test_long_vector/reduce.r | 2 pbdMPI-0.3-0/pbdMPI/inst/examples/test_long_vector/scatter.r | 2 pbdMPI-0.3-0/pbdMPI/inst/examples/test_long_vector/send_recv.r | 2 pbdMPI-0.3-0/pbdMPI/inst/examples/test_parallel/01_mclapply_spmd.r | 2 pbdMPI-0.3-0/pbdMPI/inst/examples/test_parallel/02_parMM_spmd.r | 2 pbdMPI-0.3-0/pbdMPI/inst/examples/test_parallel/03_boot_spmd.r | 2 pbdMPI-0.3-0/pbdMPI/inst/examples/test_parallel/04_glm_spmd.r | 2 pbdMPI-0.3-0/pbdMPI/inst/examples/test_performance/demo_allgather_spmd.r | 2 pbdMPI-0.3-0/pbdMPI/inst/examples/test_performance/demo_scatter_spmd.r | 2 pbdMPI-0.3-0/pbdMPI/inst/examples/test_rmpi/allgather_spmd.r | 2 pbdMPI-0.3-0/pbdMPI/inst/examples/test_rmpi/allgatherv_spmd.r | 2 pbdMPI-0.3-0/pbdMPI/inst/examples/test_rmpi/allreduce_spmd.r | 2 pbdMPI-0.3-0/pbdMPI/inst/examples/test_rmpi/bcast_spmd.r | 2 pbdMPI-0.3-0/pbdMPI/inst/examples/test_rmpi/gather_spmd.r | 2 pbdMPI-0.3-0/pbdMPI/inst/examples/test_rmpi/reduce_spmd.r | 2 pbdMPI-0.3-0/pbdMPI/inst/examples/test_rmpi/scatter_spmd.r | 2 pbdMPI-0.3-0/pbdMPI/inst/examples/test_rmpi/scatterv_spmd.r | 2 pbdMPI-0.3-0/pbdMPI/inst/examples/test_rmpi/sendrecv_spmd.r | 2 pbdMPI-0.3-0/pbdMPI/inst/examples/test_s4/01_simple.r | 5 pbdMPI-0.3-0/pbdMPI/inst/examples/test_s4/02_mean.r | 2 pbdMPI-0.3-0/pbdMPI/inst/examples/test_spmd/allgather.r | 2 pbdMPI-0.3-0/pbdMPI/inst/examples/test_spmd/allreduce.r | 2 pbdMPI-0.3-0/pbdMPI/inst/examples/test_spmd/bcast.r | 2 pbdMPI-0.3-0/pbdMPI/inst/examples/test_spmd/gather.r | 2 pbdMPI-0.3-0/pbdMPI/inst/examples/test_spmd/isend_irecv_wait.r | 2 pbdMPI-0.3-0/pbdMPI/inst/examples/test_spmd/reduce.r | 2 pbdMPI-0.3-0/pbdMPI/inst/examples/test_spmd/replace.r | 2 pbdMPI-0.3-0/pbdMPI/inst/examples/test_spmd/scatter.r | 2 pbdMPI-0.3-0/pbdMPI/inst/examples/test_spmd/send_recv.r | 2 pbdMPI-0.3-0/pbdMPI/inst/examples/test_spmd/sendrecv.r | 2 pbdMPI-0.3-0/pbdMPI/inst/examples/test_spmd/sendrecv_replace.r | 2 pbdMPI-0.3-0/pbdMPI/inst/tests |only pbdMPI-0.3-0/pbdMPI/man/11_d_control.Rd | 16 pbdMPI-0.3-0/pbdMPI/man/aa_allgather-method.Rd | 6 pbdMPI-0.3-0/pbdMPI/man/aa_allreduce-method.Rd | 4 pbdMPI-0.3-0/pbdMPI/man/aa_bcast-method.Rd | 3 pbdMPI-0.3-0/pbdMPI/man/aa_gather-method.Rd | 7 pbdMPI-0.3-0/pbdMPI/man/aa_reduce-method.Rd | 7 pbdMPI-0.3-0/pbdMPI/man/aa_scatter-method.Rd | 5 pbdMPI-0.3-0/pbdMPI/man/ab_recv-method.Rd | 6 pbdMPI-0.3-0/pbdMPI/man/ab_send-method.Rd | 5 pbdMPI-0.3-0/pbdMPI/man/ac_irecv-method.Rd | 7 pbdMPI-0.3-0/pbdMPI/man/ac_isend-method.Rd | 5 pbdMPI-0.3-0/pbdMPI/man/ad_sendrecv-method.Rd | 16 pbdMPI-0.3-0/pbdMPI/man/ad_sendrecv.replace-method.Rd | 16 pbdMPI-0.3-0/pbdMPI/man/ae_alltoall.Rd |only pbdMPI-0.3-0/pbdMPI/man/cc_arrange.mpi.apts.Rd | 2 pbdMPI-0.3-0/pbdMPI/man/cc_comm.Rd | 78 +- pbdMPI-0.3-0/pbdMPI/man/dd_info.Rd | 8 pbdMPI-0.3-0/pbdMPI/man/dd_is.comm.null.Rd | 2 pbdMPI-0.3-0/pbdMPI/man/dd_prob.Rd | 12 pbdMPI-0.3-0/pbdMPI/man/dd_sourcetag.Rd | 6 pbdMPI-0.3-0/pbdMPI/man/dd_wait.Rd | 9 pbdMPI-0.3-0/pbdMPI/man/vv_get_jid.Rd | 4 pbdMPI-0.3-0/pbdMPI/man/vv_print_cat.Rd | 22 pbdMPI-0.3-0/pbdMPI/man/vv_seed.Rd | 9 pbdMPI-0.3-0/pbdMPI/man/ww_comm_as_gbd.Rd | 6 pbdMPI-0.3-0/pbdMPI/man/ww_comm_balance.Rd | 12 pbdMPI-0.3-0/pbdMPI/man/ww_comm_read.Rd | 46 - pbdMPI-0.3-0/pbdMPI/man/ww_comm_write.Rd | 16 pbdMPI-0.3-0/pbdMPI/man/xx_comm_Rprof.Rd | 10 pbdMPI-0.3-0/pbdMPI/man/xx_comm_allpairs.Rd | 3 pbdMPI-0.3-0/pbdMPI/man/xx_comm_any_all.Rd | 8 pbdMPI-0.3-0/pbdMPI/man/xx_comm_base.Rd | 10 pbdMPI-0.3-0/pbdMPI/man/xx_comm_dist.Rd | 5 pbdMPI-0.3-0/pbdMPI/man/xx_comm_match_arg.Rd |only pbdMPI-0.3-0/pbdMPI/man/xx_comm_pairwise.Rd | 4 pbdMPI-0.3-0/pbdMPI/man/xx_comm_range.Rd | 6 pbdMPI-0.3-0/pbdMPI/man/xx_comm_sort.Rd | 5 pbdMPI-0.3-0/pbdMPI/man/xx_comm_stop_warning.Rd | 24 pbdMPI-0.3-0/pbdMPI/man/xx_comm_timer.Rd | 2 pbdMPI-0.3-0/pbdMPI/man/xx_comm_which.Rd | 7 pbdMPI-0.3-0/pbdMPI/man/yy_api_apply.Rd | 40 - pbdMPI-0.3-0/pbdMPI/man/yy_api_task_pull.Rd | 21 pbdMPI-0.3-0/pbdMPI/man/zz_spmd_control.Rd |only pbdMPI-0.3-0/pbdMPI/man/zz_spmd_internal.Rd | 3 pbdMPI-0.3-0/pbdMPI/src/spmd.c | 8 pbdMPI-0.3-0/pbdMPI/src/spmd.h | 51 + pbdMPI-0.3-0/pbdMPI/src/spmd_alltoall.c |only pbdMPI-0.3-0/pbdMPI/src/spmd_alltoallv.c |only pbdMPI-0.3-0/pbdMPI/src/spmd_bcast.c | 8 pbdMPI-0.3-0/pbdMPI/src/zzz.c |only pbdMPI-0.3-0/pbdMPI/vignettes/pbdMPI-guide.Rnw | 27 pbdMPI-0.3-0/pbdMPI/vignettes/pbdMPI-include/01-acknowledgement.tex | 2 pbdMPI-0.3-0/pbdMPI/vignettes/pbdMPI-include/01-copyright.tex | 2 pbdMPI-0.3-0/pbdMPI/vignettes/pbdMPI-include/01-introduction.tex | 2 pbdMPI-0.3-0/pbdMPI/vignettes/pbdMPI-include/02-performance.tex | 2 pbdMPI-0.3-0/pbdMPI/vignettes/pbdMPI-include/03-faq.tex | 59 + pbdMPI-0.3-0/pbdMPI/vignettes/pbdMPI-include/05-analog.tex | 4 pbdMPI-0.3-0/pbdMPI/vignettes/pbdMPI-include/07-simpleio.tex | 5 pbdMPI-0.3-0/pbdMPI/vignettes/pbdMPI-include/pbdMPI.bib | 16 174 files changed, 1274 insertions(+), 836 deletions(-)
Title: Project MOSAIC (mosaic-web.org) data sets
Description: Data sets from Project MOSAIC (mosaic-web.org) used
to teach mathematics, statistics, computation and modeling. Funded by the
NSF, Project MOSAIC is a community of educators working to tie together
aspects of quantitative work that students in science, technology,
engineering and mathematics will need in their professional lives, but
which are usually taught in isolation, if at all.
Author: Randall Pruim <rpruim@calvin.edu>, Daniel Kaplan
<kaplan@macalester.edu>, Nicholas Horton <nhorton@amherst.edu>
Maintainer: Randall Pruim <rpruim@calvin.edu>
Diff between mosaicData versions 0.9.1 dated 2014-08-22 and 0.13.0 dated 2015-12-18
mosaicData-0.13.0/mosaicData/DESCRIPTION | 9 + mosaicData-0.13.0/mosaicData/MD5 | 70 ++++++++------- mosaicData-0.13.0/mosaicData/NAMESPACE | 2 mosaicData-0.13.0/mosaicData/R/Dimes.R |only mosaicData-0.13.0/mosaicData/R/SaratogaHouses.R |only mosaicData-0.13.0/mosaicData/R/datasets.R | 86 ++++++++++++------- mosaicData-0.13.0/mosaicData/data/Births78.rda |binary mosaicData-0.13.0/mosaicData/data/Dimes.rda |only mosaicData-0.13.0/mosaicData/data/HeatX.R |only mosaicData-0.13.0/mosaicData/data/Riders.rda |only mosaicData-0.13.0/mosaicData/data/SaratogaHouses.rda |only mosaicData-0.13.0/mosaicData/data/datalist | 4 mosaicData-0.13.0/mosaicData/man/Alcohol.Rd | 3 mosaicData-0.13.0/mosaicData/man/Birthdays.Rd | 5 - mosaicData-0.13.0/mosaicData/man/Births78.Rd | 6 - mosaicData-0.13.0/mosaicData/man/CPS85.Rd | 8 + mosaicData-0.13.0/mosaicData/man/Cards.Rd | 6 - mosaicData-0.13.0/mosaicData/man/CoolingWater.Rd | 8 + mosaicData-0.13.0/mosaicData/man/Countries.Rd | 3 mosaicData-0.13.0/mosaicData/man/Dimes.Rd |only mosaicData-0.13.0/mosaicData/man/Galton.Rd | 4 mosaicData-0.13.0/mosaicData/man/Gestation.Rd | 20 ++-- mosaicData-0.13.0/mosaicData/man/HELPfull.Rd | 34 +++---- mosaicData-0.13.0/mosaicData/man/HELPmiss.Rd | 30 +++--- mosaicData-0.13.0/mosaicData/man/HELPrct.Rd | 46 +++++----- mosaicData-0.13.0/mosaicData/man/HeatX.Rd | 7 - mosaicData-0.13.0/mosaicData/man/KidsFeet.Rd | 4 mosaicData-0.13.0/mosaicData/man/Marriage.Rd | 6 - mosaicData-0.13.0/mosaicData/man/Mites.Rd | 4 mosaicData-0.13.0/mosaicData/man/RailTrail.Rd | 14 +-- mosaicData-0.13.0/mosaicData/man/Riders.Rd |only mosaicData-0.13.0/mosaicData/man/SAT.Rd | 9 + mosaicData-0.13.0/mosaicData/man/SaratogaHouses.Rd |only mosaicData-0.13.0/mosaicData/man/SnowGR.Rd | 4 mosaicData-0.13.0/mosaicData/man/SwimRecords.Rd | 4 mosaicData-0.13.0/mosaicData/man/TenMileRace.Rd | 4 mosaicData-0.13.0/mosaicData/man/Utilities.Rd | 4 mosaicData-0.13.0/mosaicData/man/Utilities2.Rd | 6 - mosaicData-0.13.0/mosaicData/man/Whickham.Rd | 6 - mosaicData-0.9.1/mosaicData/data/HeatX.rda |only mosaicData-0.9.1/mosaicData/data/Heightweight.rda |only mosaicData-0.9.1/mosaicData/man/Heightweight.Rd |only 42 files changed, 252 insertions(+), 164 deletions(-)
Title: Project MOSAIC Statistics and Mathematics Teaching Utilities
Description: Data sets and utilities from Project MOSAIC (mosaic-web.org) used
to teach mathematics, statistics, computation and modeling. Funded by the
NSF, Project MOSAIC is a community of educators working to tie together
aspects of quantitative work that students in science, technology,
engineering and mathematics will need in their professional lives, but
which are usually taught in isolation, if at all.
Author: Randall Pruim <rpruim@calvin.edu>, Daniel Kaplan
<kaplan@macalester.edu>, Nicholas Horton <nhorton@amherst.edu>
Maintainer: Randall Pruim <rpruim@calvin.edu>
Diff between mosaic versions 0.12 dated 2015-10-12 and 0.13.0 dated 2015-12-18
DESCRIPTION | 11 MD5 | 451 +++++----- NAMESPACE | 19 R/Tukey.R | 3 R/bargraph.R | 14 R/chisq.R | 26 R/confint.R | 141 ++- R/dfapply.R | 25 R/do.R | 5 R/favstats.R | 23 R/fitSpline.R | 8 R/inspect.R |only R/interval.R | 10 R/makeFun.R | 18 R/mplot.R | 65 - R/nmissing.R |only R/plotFun.R | 2 R/plotModel.R | 14 R/pqrdata.R | 109 +- R/read.file.R | 40 R/resample.R | 4 R/rescale.R | 31 R/tally.R | 109 +- build/vignette.rds |binary inst/doc/GraphicsWithMosaic.html | 46 - inst/doc/LessVolume-MoreCreativity.html | 30 inst/doc/MinimalR.R | 16 inst/doc/MinimalR.Rnw | 16 inst/doc/MinimalR.pdf |binary inst/doc/Resampling.R | 6 inst/doc/Resampling.Rnw | 6 inst/doc/Resampling.pdf |binary inst/doc/mosaic-resources.html | 4 inst/doc/plotModel-vignette.R | 74 - inst/doc/plotModel-vignette.Rmd | 11 inst/doc/plotModel-vignette.html | 90 + man/Broyden.Rd | 2 man/CIAdata.Rd | 8 man/CIsim.Rd | 19 man/Calculus.Rd | 42 man/FunctionsFromData.Rd | 2 man/MAD.Rd | 10 man/MAD_.Rd | 2 man/MSPE.Rd | 2 man/TukeyHSD.lm.Rd | 6 man/adapt_seq.Rd | 11 man/aggregating.Rd | 8 man/aggregatingAux.Rd | 7 man/aggregatingFunction1.Rd | 4 man/aggregatingFunction2.Rd | 2 man/as-xtabs.Rd | 2 man/ashplot.Rd | 12 man/bargraph.Rd | 15 man/binom.test.Rd | 25 man/cdist.Rd | 10 man/chisq.Rd | 21 man/clustering.Rd | 4 man/coef.Rd | 2 man/columns.Rd | 2 man/compareMean.Rd | 12 man/compareProportion.Rd | 4 man/confint.Rd | 59 - 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man/pqrdata2.Rd | 16 man/project-methods.Rd | 28 man/prop.Rd | 26 man/prop.test.Rd | 40 man/qdist.Rd | 10 man/r.squared.Rd | 2 man/rand.Rd | 8 man/read.file.Rd | 42 man/relm.Rd | 2 man/repeater-class.Rd | 4 man/resample.Rd | 12 man/rescale.Rd | 17 man/rflip.Rd | 2 man/rfun.Rd | 4 man/rgeo-internals.Rd | 4 man/rgeo.Rd | 20 man/rkintegrate.Rd | 2 man/rspin.Rd | 4 man/rsquared.Rd | 2 man/rstudio.Rd | 4 man/set.rseed.Rd | 2 man/simplify.Rd | 2 man/sp2df.Rd | 13 man/standardName.Rd | 12 man/statTally.Rd | 19 man/surround.Rd | 2 man/swap.Rd | 8 man/symbolicD.Rd | 4 man/symbolicInt.Rd | 2 man/tally.Rd | 52 - man/theme_map.Rd | 4 man/themes.Rd | 13 man/ttest.Rd | 16 man/update_ci.Rd | 2 man/xchisq.test.Rd | 14 man/xhistogram.Rd | 28 man/xpnorm.Rd | 16 man/xqqmath.Rd | 6 man/zscore.Rd | 8 tests/testthat/test-binomtest.R | 9 tests/testthat/test-pqrdata.R | 25 vignettes/GraphicsWithMosaic_files/figure-html/logistic-1.png |binary vignettes/GraphicsWithMosaic_files/figure-html/unnamed-chunk-10-1.png |binary vignettes/GraphicsWithMosaic_files/figure-html/unnamed-chunk-11-1.png |binary vignettes/GraphicsWithMosaic_files/figure-html/unnamed-chunk-11-2.png |binary vignettes/GraphicsWithMosaic_files/figure-html/unnamed-chunk-12-1.png |binary vignettes/GraphicsWithMosaic_files/figure-html/unnamed-chunk-12-2.png |binary vignettes/GraphicsWithMosaic_files/figure-html/unnamed-chunk-13-1.png |binary vignettes/GraphicsWithMosaic_files/figure-html/unnamed-chunk-13-2.png |binary vignettes/GraphicsWithMosaic_files/figure-html/unnamed-chunk-14-1.png |binary vignettes/GraphicsWithMosaic_files/figure-html/unnamed-chunk-14-2.png |binary vignettes/GraphicsWithMosaic_files/figure-html/unnamed-chunk-14-3.png |binary vignettes/GraphicsWithMosaic_files/figure-html/unnamed-chunk-15-1.png |binary vignettes/GraphicsWithMosaic_files/figure-html/unnamed-chunk-15-2.png |binary vignettes/GraphicsWithMosaic_files/figure-html/unnamed-chunk-16-1.png |binary vignettes/GraphicsWithMosaic_files/figure-html/unnamed-chunk-17-1.png |binary vignettes/GraphicsWithMosaic_files/figure-html/unnamed-chunk-17-2.png |binary vignettes/GraphicsWithMosaic_files/figure-html/unnamed-chunk-17-3.png |binary vignettes/GraphicsWithMosaic_files/figure-html/unnamed-chunk-3-1.png |binary vignettes/GraphicsWithMosaic_files/figure-html/unnamed-chunk-4-1.png |binary vignettes/GraphicsWithMosaic_files/figure-html/unnamed-chunk-8-1.png |binary vignettes/GraphicsWithMosaic_files/figure-html/unnamed-chunk-8-2.png |binary vignettes/GraphicsWithMosaic_files/figure-html/unnamed-chunk-9-1.png |binary vignettes/LessVolume-MoreCreativity_files/figure-html/unnamed-chunk-10-1.png |binary vignettes/LessVolume-MoreCreativity_files/figure-html/unnamed-chunk-16-1.png |binary vignettes/LessVolume-MoreCreativity_files/figure-html/unnamed-chunk-17-1.png |binary vignettes/LessVolume-MoreCreativity_files/figure-html/unnamed-chunk-19-1.png |binary vignettes/LessVolume-MoreCreativity_files/figure-html/unnamed-chunk-31-1.png |binary vignettes/LessVolume-MoreCreativity_files/figure-html/unnamed-chunk-32-1.png |binary vignettes/LessVolume-MoreCreativity_files/figure-html/unnamed-chunk-37-1.png |binary vignettes/LessVolume-MoreCreativity_files/figure-html/unnamed-chunk-4-1.png |binary vignettes/LessVolume-MoreCreativity_files/figure-html/unnamed-chunk-5-1.png |binary vignettes/LessVolume-MoreCreativity_files/figure-html/unnamed-chunk-6-1.png |binary vignettes/LessVolume-MoreCreativity_files/figure-html/unnamed-chunk-7-1.png |binary vignettes/LessVolume-MoreCreativity_files/figure-html/unnamed-chunk-8-1.png |binary vignettes/LessVolume-MoreCreativity_files/figure-html/unnamed-chunk-9-1.png |binary vignettes/MinimalR.Rnw | 16 vignettes/Resampling.Rnw | 6 vignettes/plotModel-vignette.Rmd | 11 vignettes/plotModel-vignette_files/figure-html/unnamed-chunk-1-1.png |binary vignettes/plotModel-vignette_files/figure-html/unnamed-chunk-1-10.png |binary vignettes/plotModel-vignette_files/figure-html/unnamed-chunk-1-11.png |binary vignettes/plotModel-vignette_files/figure-html/unnamed-chunk-1-12.png |binary vignettes/plotModel-vignette_files/figure-html/unnamed-chunk-1-13.png |only vignettes/plotModel-vignette_files/figure-html/unnamed-chunk-1-2.png |binary vignettes/plotModel-vignette_files/figure-html/unnamed-chunk-1-3.png |binary vignettes/plotModel-vignette_files/figure-html/unnamed-chunk-1-4.png |binary vignettes/plotModel-vignette_files/figure-html/unnamed-chunk-1-5.png |binary vignettes/plotModel-vignette_files/figure-html/unnamed-chunk-1-6.png |binary vignettes/plotModel-vignette_files/figure-html/unnamed-chunk-1-7.png |binary vignettes/plotModel-vignette_files/figure-html/unnamed-chunk-1-8.png |binary vignettes/plotModel-vignette_files/figure-html/unnamed-chunk-1-9.png |binary 229 files changed, 1720 insertions(+), 1322 deletions(-)
Title: Graphical Analysis of Variance Using ggplot2
Description: This collection of functions in 'granovaGG'
provides what we call elemental graphics for display of
anova results. The term elemental derives from the fact
that each function is aimed at construction of
graphical displays that afford direct visualizations of
data with respect to the fundamental questions that
drive the particular anova methods. This package
represents a modification of the original granova
package; the key change is to use 'ggplot2', Hadley
Wickham's package based on Grammar of Graphics concepts
(due to Wilkinson). The main function is granovagg.1w()
(a graphic for one way ANOVA); two other functions
(granovagg.ds() and granovagg.contr()) are to construct
graphics for dependent sample analyses and
contrast-based analyses respectively. (The function
granova.2w(), which entails dynamic displays of data, is
not currently part of 'granovaGG'.) The 'granovaGG'
functions are to display data for any number of groups,
regardless of their sizes (however, very large data
sets or numbers of groups can be problematic). For
granovagg.1w() a specialized approach is used to
construct data-based contrast vectors for which anova
data are displayed. The result is that the graphics use
a straight line to facilitate clear interpretations
while being faithful to the standard effect test in
anova. The graphic results are complementary to
standard summary tables; indeed, numerical summary
statistics are provided as side effects of the graphic
constructions. granovagg.ds() and granovagg.contr() provide
graphic displays and numerical outputs for a dependent
sample and contrast-based analyses. The graphics based
on these functions can be especially helpful for
learning how the respective methods work to answer the
basic question(s) that drive the analyses. This means
they can be particularly helpful for students and
non-statistician analysts. But these methods can be of
assistance for work-a-day applications of many kinds,
as they can help to identify outliers, clusters or
patterns, as well as highlight the role of non-linear
transformations of data. In the case of granovagg.1w()
and granovagg.ds() several arguments are provided to
facilitate flexibility in the construction of graphics
that accommodate diverse features of data, according to
their corresponding display requirements. See the help
files for individual functions.
Author: Brian A. Danielak <brian@briandk.com>,
Robert M. Pruzek <RMPruzek@yahoo.com>,
with contributions from:
William E. J. Doane <wil@DrDoane.com>,
James E. Helmreich <James.Helmreich@Marist.edu>,
Jason Bryer <jason@bryer.org>
Maintainer: Brian A. Danielak <brian@briandk.com>
Diff between granovaGG versions 1.3 dated 2015-01-01 and 1.4.0 dated 2015-12-18
DESCRIPTION | 34 +++++++++++++------------- MD5 | 49 +++++++++++++++++++++----------------- NAMESPACE | 5 ++- NEWS | 15 +++++++++++ NEWS.md |only R/granovaGG-package.R | 41 +++++++++++++++++++++++++++++--- R/granovagg.1w.R | 6 +++- R/granovagg.contr.R | 2 + R/granovagg.ds.R | 60 ++++++++++++++++++++++++++++++++--------------- R/theme-defaults.R | 5 +-- data/anorexia.rda |only data/anorexia.sub.rda |binary data/shoes.rda |only demo/granovagg.1w.R | 10 +++---- demo/granovagg.ds.R | 10 +++---- inst/CITATION | 2 - man/anorexia.Rd |only man/anorexia.sub.Rd | 8 +++--- man/arousal.Rd | 2 - man/blood_lead.Rd | 2 - man/granovaGG-package.Rd | 2 - man/granovagg.1w.Rd | 12 ++++----- man/granovagg.contr.Rd | 2 - man/granovagg.ds.Rd | 12 ++++----- man/poison.Rd | 2 - man/rat.Rd | 2 - man/shoes.Rd |only man/tobacco.Rd | 2 - 28 files changed, 183 insertions(+), 102 deletions(-)
Title: Foundations and Applications of Statistics Using R
Description: Data sets and utilities to accompany
"Foundations and Applications of Statistics: an Introduction
using R" (R Pruim, published by AMS, 2011), a text covering
topics from probability and mathematical statistics at an advanced
undergraduate level. R is integrated throughout, and access to all
the R code in the book is provided via the snippet function.
Author: Randall Pruim
Maintainer: Randall Pruim <rpruim@calvin.edu>
Diff between fastR versions 0.10 dated 2015-05-23 and 0.10.2 dated 2015-12-18
DESCRIPTION | 19 ++-- MD5 | 156 +++++++++++++++++++------------------- NAMESPACE | 36 ++++++++ R/datasets.R | 18 +++- R/fastR-package.R | 7 + README.md | 14 +-- build/vignette.rds |binary inst/doc/Errata.pdf |binary inst/doc/Updates.R | 106 ++++++++++++------------- inst/doc/Updates.Rnw | 106 ++++++++++++------------- inst/doc/Updates.pdf |binary man/Jordan8687.Rd | 4 man/actgpa.Rd | 4 man/airlineArrival.Rd | 6 - man/airpollution.Rd | 4 man/balldrop.Rd | 4 man/batting.Rd | 4 man/births78.Rd | 4 man/buckthorn.Rd | 4 man/bugs.Rd | 4 man/col.fastR.Rd | 3 man/col.perc.Rd | 4 man/concrete.Rd | 4 man/corn.Rd | 4 man/cuckoo.Rd | 7 + man/deathPenalty.Rd | 4 man/drag.Rd | 4 man/endurance.Rd | 4 man/familySmoking.Rd | 4 man/fastR-package.Rd | 4 man/fumbles.Rd | 4 man/fusion.Rd | 12 +- man/geolm.Rd | 8 + man/givenOrder.Rd | 2 man/golfballs.Rd | 4 man/gpa.Rd | 4 man/heliumFootballs.Rd | 4 man/ice.Rd | 4 man/inflation.Rd | 4 man/kids.Rd | 4 man/littleSurvey.Rd | 4 man/mathnoise.Rd | 6 - man/miaa05.Rd | 4 man/mlb2004.Rd | 4 man/ncaa2010.Rd | 4 man/nfl2007.Rd | 16 ++- man/nlmax.Rd | 4 man/noise.Rd | 8 + man/palettes.Rd | 8 + man/paperplanes.Rd | 4 man/pendulum.Rd | 4 man/petstress.Rd | 4 man/pigs.Rd | 4 man/pitching2005.Rd | 4 man/poison.Rd | 10 +- man/punting.Rd | 6 - man/ratpoison.Rd | 4 man/rgolfballs.Rd | 4 man/rubberband.Rd | 4 man/scent.Rd | 4 man/snippet.Rd | 2 man/soap.Rd | 6 - man/spheres.Rd | 2 man/step.Rd | 4 man/stereogram.Rd | 6 - man/students.Rd | 4 man/tastetest.Rd | 4 man/tdf.Rd | 5 - man/tirewear.Rd | 4 man/traffic.Rd | 6 - man/trebuchet.Rd | 4 man/undocumented.Rd | 10 +- man/utilities.Rd | 4 man/vaov.Rd | 4 man/wilson.ci.Rd | 4 man/workingWomen.Rd | 4 man/xplot.Rd | 4 vignettes/Updates-concordance.tex | 2 vignettes/Updates.Rnw | 106 ++++++++++++------------- 79 files changed, 530 insertions(+), 357 deletions(-)
Title: Extreme Value Analysis
Description: Functions for performing extreme value analysis.
Author: Eric Gilleland
Maintainer: Eric Gilleland <ericg@ucar.edu>
Diff between extRemes versions 2.0-6 dated 2015-08-27 and 2.0-7 dated 2015-12-18
DESCRIPTION | 8 ++++---- MD5 | 6 ++++-- R/hwmid.R |only man/extRemes-internal.Rd | 1 + man/hwmid.Rd |only 5 files changed, 9 insertions(+), 6 deletions(-)
Title: Distance Measure Based Judgment and Learning
Description: Implements various decision support tools related to the new product development.
Subroutines include combinatorial search (all possible subset regression), productivity evaluation using distance measures: DDF (directional distance function), DEA (data envelopment analysis), SBM (slack-based measure), and SF (shortage function), benchmarking, risk analysis, technology adoption model, new product target setting, etc.
Author: Dong-Joon Lim, PhD
Maintainer: Dong-Joon Lim <tgno3.com@gmail.com>
Diff between DJL versions 1.7 dated 2015-11-17 and 1.8 dated 2015-12-18
DESCRIPTION | 10 - MD5 | 36 +++---- NAMESPACE | 7 - NEWS | 16 ++- R/DJL-internal.R | 250 ++++++++++++++++++++++++------------------------- R/aps.reg.R |only R/dm.ddf.R | 5 R/dm.dea.R | 10 + R/dm.sbm.R | 6 + R/dm.sf.R | 5 R/map.soa.ddf.R | 6 + R/map.soa.dea.R | 7 + R/map.soa.sbm.R | 7 + R/map.soa.sf.R | 6 + R/roc.dea.R | 7 + R/roc.sf.R | 6 + R/target.arrival.dea.R | 7 + R/target.arrival.sf.R | 6 + R/target.spec.dea.R | 6 + man/aps.reg.Rd |only 20 files changed, 249 insertions(+), 154 deletions(-)
Title: Conditioned Latin Hypercube Sampling
Description: Conditioned Latin hypercube sampling, as published by Minasny and McBratney (2006). This method proposes to stratify sampling in presence of ancillary data. An extension of this method, which propose to associate a cost to each individual and take it into account during the optimisation process, is also proposed (Roudier et al., 2012).
Author: Pierre Roudier
Maintainer: Pierre Roudier <roudierp@landcareresearch.co.nz>
Diff between clhs versions 0.5-4 dated 2014-09-18 and 0.5-5 dated 2015-12-18
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- NAMESPACE | 20 ++++++++++++++++++-- R/plot.R | 12 ++++++------ build/vignette.rds |binary inst/CITATION | 1 - inst/doc/vignette.R | 1 + inst/doc/vignette.Rnw | 1 + inst/doc/vignette.pdf |binary man/clhs.Rd | 4 ++-- vignettes/vignette.Rnw | 1 + 11 files changed, 44 insertions(+), 26 deletions(-)