Title: R Code for Stock Synthesis
Description: A collection of R functions for use with Stock Synthesis, a
fisheries stock assessment modeling platform written in ADMB by Dr. Richard
D. Methot at the NOAA Northwest Fisheries Science Center. The functions
include tools for summarizing and plotting results, manipulating files,
visualizing model parameterizations, and various other common stock
assessment tasks.
Author: Ian G. Taylor, Ian J. Stewart, Allan C. Hicks, Tommy M. Garrison,
Andre E. Punt, John R. Wallace, Chantel R. Wetzel, James T. Thorson,
Yukio Takeuchi, Kotaro Ono, Cole C. Monnahan, Christine C. Stawitz,
Z. Teresa A'mar, Athol R. Whitten, Kelli F. Johnson, Robbie L. Emmet,
Sean C. Anderson, and other contributors.
Maintainer: Ian Taylor <Ian.Taylor@noaa.gov>
Diff between r4ss versions 1.22.1 dated 2014-07-12 and 1.24.0 dated 2015-12-23
DESCRIPTION | 26 MD5 | 276 +++---- NAMESPACE | 225 +++--- NEWS.md |only R/IOTCmove.R | 1 R/NegLogInt_Fn.R | 392 ++++++---- R/PinerPlot.R | 116 ++- R/RebuildPlot.R | 27 R/SSMethod.Cond.TA1.8.R |only R/SSMethod.TA1.8.R |only R/SS_ForeCatch.R |only R/SS_RunJitter.R | 51 - R/SS_changepars.R | 273 +++++-- R/SS_decision_table_stuff.R |only R/SS_doRetro.R | 15 R/SS_fitbiasramp.R | 38 - R/SS_html.R | 28 R/SS_makedatlist.R | 15 R/SS_output.R | 345 ++++++--- R/SS_parlines.R | 16 R/SS_plots.R | 331 +++++---- R/SS_readdat.R | 16 R/SS_readstarter.R | 26 R/SS_varadjust.R |only R/SS_writeforecast.R | 10 R/SS_writestarter.R | 29 R/SSgetoutput.R | 5 R/SSplotBiology.R | 903 ++++++++++++++++++++---- R/SSplotCatch.R | 27 R/SSplotCohorts.R | 8 R/SSplotComparisons.R | 956 +++++++++++++++++--------- R/SSplotComps.R | 1577 ++++++++++++++++++++++++------------------- R/SSplotData.R | 23 R/SSplotDiscard.R | 31 R/SSplotIndices.R | 462 +++++++----- R/SSplotMnwt.R | 8 R/SSplotMovementRates.R | 230 +++--- R/SSplotNumbers.R | 206 ++++- R/SSplotPars.R | 95 +- R/SSplotProfile.R | 11 R/SSplotRecdevs.R | 17 R/SSplotRecdist.R | 8 R/SSplotRetroRecruits.R | 33 R/SSplotSPR.R | 39 - R/SSplotSelex.R | 20 R/SSplotSpawnrecruit.R | 118 ++- R/SSplotSummaryF.R | 8 R/SSplotTags.R | 36 R/SSplotTimeseries.R | 57 + R/SSplotYield.R | 12 R/SSsummarize.R | 176 +--- R/SStableComparisons.R | 30 R/bubble3.R | 61 + R/getADMBHessian.R | 2 R/make_multifig.R | 521 ++++++++++---- R/mcmc.nuisance.R | 12 R/mcmc.out.R | 164 ++-- R/movepars.R | 2 R/r4ss-package.R | 39 - R/r4ss_logo.R | 40 - R/read.admbFit.R | 37 - R/stackpoly.R | 44 - R/update_r4ss_files.R | 233 ------ README.md | 56 + man/DoProjectPlots.Rd | 206 ++--- man/IOTCmove.Rd | 75 +- man/NegLogInt_Fn.Rd | 171 ++-- man/PinerPlot.Rd | 242 +++--- man/SSFishGraph.Rd | 61 - man/SSMethod.Cond.TA1.8.Rd |only man/SSMethod.TA1.8.Rd |only man/SS_ForeCatch.Rd |only man/SS_RunJitter.Rd | 72 + man/SS_changepars.Rd | 156 ++-- man/SS_doRetro.Rd | 137 +-- man/SS_fitbiasramp.Rd | 167 ++-- man/SS_html.Rd | 105 +- man/SS_makedatlist.Rd | 255 +++--- man/SS_output.Rd | 211 ++--- man/SS_parlines.Rd | 123 +-- man/SS_plots.Rd | 552 +++++++-------- man/SS_profile.Rd | 291 ++++--- man/SS_readctl.Rd | 67 - man/SS_readdat.Rd | 71 - man/SS_readforecast.Rd | 61 - man/SS_readstarter.Rd | 53 - man/SS_recdevs.Rd | 113 +-- man/SS_splitdat.Rd | 103 +- man/SS_varadjust.Rd |only man/SS_write_length.fit.Rd | 75 +- man/SS_writectl.Rd | 67 - man/SS_writedat.Rd | 65 - man/SS_writeforecast.Rd | 75 +- man/SS_writestarter.Rd | 77 +- man/SSbootstrap.Rd | 55 - man/SSgetMCMC.Rd | 113 +-- man/SSgetoutput.Rd | 109 +- man/SSmakeMmatrix.Rd | 61 - man/SSplotBiology.Rd | 135 +-- man/SSplotCatch.Rd | 221 +++--- man/SSplotCohorts.Rd | 161 ++-- man/SSplotComparisons.Rd | 424 ++++++----- man/SSplotComps.Rd | 388 +++++----- man/SSplotData.Rd | 149 ++-- man/SSplotDiscard.Rd | 135 +-- man/SSplotIndices.Rd | 226 +++--- man/SSplotMCMC_ExtraSelex.Rd | 73 + man/SSplotMnwt.Rd | 137 +-- man/SSplotMovementMap.Rd | 131 +-- man/SSplotMovementRates.Rd | 143 +-- man/SSplotNumbers.Rd | 168 ++-- man/SSplotPars.Rd | 242 +++--- man/SSplotProfile.Rd | 277 +++---- man/SSplotRecdevs.Rd | 143 +-- man/SSplotRecdist.Rd | 121 +-- man/SSplotRetroRecruits.Rd | 185 ++--- man/SSplotSPR.Rd | 141 +-- man/SSplotSelex.Rd | 231 +++--- man/SSplotSpawnrecruit.Rd | 170 ++-- man/SSplotSummaryF.Rd | 105 +- man/SSplotTags.Rd | 177 ++-- man/SSplotTimeseries.Rd | 167 ++-- man/SSplotYield.Rd | 129 +-- man/SSsummarize.Rd | 110 +- man/SStableComparisons.Rd | 115 +-- man/TSCplot.Rd | 231 +++--- man/addSSsummarize.Rd | 187 ++--- man/bubble3.Rd | 156 ++-- man/getADMBHessian.Rd | 62 - man/make_multifig.Rd | 376 +++++----- man/mcmc.nuisance.Rd | 121 +-- man/mcmc.out.Rd | 157 ++-- man/mountains.Rd | 111 +-- man/movepars.Rd | 61 - man/plotCI.Rd | 87 +- man/r4ss-package.Rd | 85 +- man/r4ss_logo.Rd | 31 man/read.admbFit.Rd | 52 - man/rich.colors.short.Rd | 47 - man/sel.line.Rd | 79 +- man/selfit.Rd | 73 + man/selfit_spline.Rd | 97 +- man/stackpoly.Rd | 111 +-- man/update_r4ss_files.Rd | 84 -- 144 files changed, 11088 insertions(+), 8476 deletions(-)
Title: Management, Display, and Processing of Medical Imaging Data
Description: Provide a compact storage for medical imaging data with access and display possibilities. Basic tools for processing brain imaging data are proposed like extraction of brain voxels, morphological image segmentation, and filtering / normalization of contrast parameters. Specific tools are also provided for blood perfusion imaging to calculate hypoperfusion and reperfusion volumes.
Author: Brice Ozenne
Maintainer: Brice Ozenne <brice.ozenne@orange.fr>
Diff between MRIaggr versions 1.1.4 dated 2015-11-08 and 1.1.5 dated 2015-12-23
DESCRIPTION | 8 MD5 | 32 - R/Class_MRIaggr.R | 18 R/Functions_AssociatedClass.R | 61 +- R/Functions_GR.R | 2 R/Functions_Potts.R | 15 R/RcppExports.R | 8 inst/List_of_arguments.R | 859 +++++++++++++++++------------------- inst/NEWS | 20 man/MRIaggr-calcGroupsCoords_cpp.Rd | 5 man/MRIaggr-calcGroupsW.Rd | 4 man/MRIaggr-calcGroupsW_cpp.Rd | 3 src/Functions_W.cpp | 10 src/RcppExports.cpp | 17 src/Utilities_General.h | 26 + src/Utilities_Potential.h | 2 src/Utilities_W.h | 350 ++++++++------ 17 files changed, 770 insertions(+), 670 deletions(-)
Title: Dot-and-Whisker Plots of Regression Results
Description: Quick and easy dot-and-whisker plots of regression results.
Author: Frederick Solt <frederick-solt@uiowa.edu>, Yue Hu <yue-hu-1@uiowa.edu>
Maintainer: Yue Hu <yue-hu-1@uiowa.edu>
Diff between dotwhisker versions 0.2.0.1 dated 2015-10-06 and 0.2.0.2 dated 2015-12-23
DESCRIPTION | 7 ++++--- MD5 | 30 +++++++++++++++--------------- NAMESPACE | 7 +++++-- R/add_brackets.R | 3 ++- R/dwplot.R | 27 +++++++++++++++++++++------ R/relabel_predictors.R | 2 +- README.md | 2 +- man/add_brackets.Rd | 3 ++- man/by_2sd.Rd | 3 ++- man/dwplot.Rd | 8 +++++++- man/relabel_predictors.Rd | 3 ++- man/relabel_y_axis.Rd | 3 ++- man/secret_weapon.Rd | 4 +++- man/small_multiple.Rd | 3 ++- vignettes/dotwhisker-vignette.Rmd | 13 ++++++++++++- vignettes/kl2007_examples.Rmd | 4 ++-- 16 files changed, 83 insertions(+), 39 deletions(-)
Title: Plots (Slightly Extended) Bland-Altman Plots
Description: Bland-Altman Plots using either base graphics or ggplot2,
augmented with confidence intervals, with detailed return values and
a sunflowerplot option for data with ties.
Author: Bernhard Lehnert
Maintainer: Bernhard Lehnert <bernhard.lehnert@uni-greifswald.de>
Diff between BlandAltmanLeh versions 0.2.1 dated 2015-12-15 and 0.3.1 dated 2015-12-23
DESCRIPTION | 10 +-- MD5 | 16 ++--- R/bland.altman.R | 62 ++++++++++++-------- inst/doc/Intro.R | 49 +++++++++++----- inst/doc/Intro.Rmd | 125 +++++++++++++++++++++++++----------------- inst/doc/Intro.html | 96 +++++++++++++++++++------------- man/BlandAltmanLeh-package.Rd | 4 - man/bland.altman.plot.Rd | 36 ++++++------ vignettes/Intro.Rmd | 125 +++++++++++++++++++++++++----------------- 9 files changed, 313 insertions(+), 210 deletions(-)
More information about BlandAltmanLeh at CRAN
Permanent link
Title: 'vcd' Extensions and Additions
Description: Provides additional data sets, methods and documentation to complement the 'vcd' package for Visualizing Categorical Data
and the 'gnm' package for Generalized Nonlinear Models.
In particular, 'vcdExtra' extends mosaic, assoc and sieve plots from 'vcd' to handle 'glm()' and 'gnm()' models and
adds a 3D version in 'mosaic3d'. Additionally, methods are provided for comparing and visualizing lists of
'glm' and 'loglm' objects. This package is now a support package for the book, "Discrete Data Analysis with R" by
Michael Friendly and David Meyer.
Author: Michael Friendly [aut, cre], Heather Turner [ctb], Achim Zeileis [ctb], Duncan Murdoch [ctb], David Firth [ctb]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between vcdExtra versions 0.6-11 dated 2015-09-17 and 0.6-12 dated 2015-12-23
DESCRIPTION | 8 ++++---- MD5 | 16 +++++++++------- NEWS | 6 ++++++ data/Burt.RData |only inst/doc/vcd-tutorial.R | 8 ++++---- inst/doc/vcd-tutorial.Rnw | 10 +++++----- man/Burt.Rd |only man/Donner.Rd | 4 ++-- man/vcdExtra-package.Rd | 10 ++++++++-- vignettes/vcd-tutorial.Rnw | 10 +++++----- 10 files changed, 43 insertions(+), 29 deletions(-)
Title: Handling of Swedish Identity Numbers
Description: Structural handling of identity numbers used in the Swedish
administration such as personal identity numbers ('personnummer') and
organizational identity numbers ('organisationsnummer').
Author: Mans Magnusson and Erik Bulow
Maintainer: Mans Magnusson <mons.magnusson@gmail.com>
Diff between sweidnumbr versions 0.8.2 dated 2015-12-05 and 1.0.0 dated 2015-12-23
sweidnumbr-0.8.2/sweidnumbr/man/format.Rd |only sweidnumbr-0.8.2/sweidnumbr/man/format.pin.Rd |only sweidnumbr-0.8.2/sweidnumbr/man/is.pin.Rd |only sweidnumbr-1.0.0/sweidnumbr/DESCRIPTION | 10 - sweidnumbr-1.0.0/sweidnumbr/MD5 | 74 +++++------ sweidnumbr-1.0.0/sweidnumbr/NAMESPACE | 5 sweidnumbr-1.0.0/sweidnumbr/R/create_s3_methods.R | 13 + sweidnumbr-1.0.0/sweidnumbr/R/firstlib.R | 2 sweidnumbr-1.0.0/sweidnumbr/R/format.pin.R | 36 +---- sweidnumbr-1.0.0/sweidnumbr/R/oin.R | 8 - sweidnumbr-1.0.0/sweidnumbr/R/oin_internal.R | 2 sweidnumbr-1.0.0/sweidnumbr/R/pin.R | 46 ++---- sweidnumbr-1.0.0/sweidnumbr/build/vignette.rds |binary sweidnumbr-1.0.0/sweidnumbr/inst/CITATION | 23 ++- sweidnumbr-1.0.0/sweidnumbr/inst/doc/sweidnumbr.R | 4 sweidnumbr-1.0.0/sweidnumbr/inst/doc/sweidnumbr.Rmd | 16 +- sweidnumbr-1.0.0/sweidnumbr/inst/doc/sweidnumbr.html | 35 ++--- sweidnumbr-1.0.0/sweidnumbr/man/as.oin.Rd | 8 - sweidnumbr-1.0.0/sweidnumbr/man/as.pin.Rd | 26 ++- sweidnumbr-1.0.0/sweidnumbr/man/create_s3_method.Rd |only sweidnumbr-1.0.0/sweidnumbr/man/fake_pins.Rd | 2 sweidnumbr-1.0.0/sweidnumbr/man/format_pin.Rd |only sweidnumbr-1.0.0/sweidnumbr/man/is.oin.Rd | 5 sweidnumbr-1.0.0/sweidnumbr/man/luhn_algo.Rd | 7 - sweidnumbr-1.0.0/sweidnumbr/man/oin_ctrl.Rd | 3 sweidnumbr-1.0.0/sweidnumbr/man/oin_group.Rd | 3 sweidnumbr-1.0.0/sweidnumbr/man/oin_group_element.Rd | 4 sweidnumbr-1.0.0/sweidnumbr/man/pin_age.Rd | 5 sweidnumbr-1.0.0/sweidnumbr/man/pin_birthplace.Rd | 11 - sweidnumbr-1.0.0/sweidnumbr/man/pin_birthplace_internal.Rd | 2 sweidnumbr-1.0.0/sweidnumbr/man/pin_century.Rd | 2 sweidnumbr-1.0.0/sweidnumbr/man/pin_convert.Rd | 2 sweidnumbr-1.0.0/sweidnumbr/man/pin_coordn.Rd | 3 sweidnumbr-1.0.0/sweidnumbr/man/pin_coordn_correct.Rd | 2 sweidnumbr-1.0.0/sweidnumbr/man/pin_ctrl.Rd | 5 sweidnumbr-1.0.0/sweidnumbr/man/pin_sex.Rd | 3 sweidnumbr-1.0.0/sweidnumbr/man/pin_to_date.Rd | 3 sweidnumbr-1.0.0/sweidnumbr/man/sweidnumbr.Rd | 6 sweidnumbr-1.0.0/sweidnumbr/tests/testthat/test-format.pin.R | 11 - sweidnumbr-1.0.0/sweidnumbr/vignettes/sweidnumbr.Rmd | 16 +- sweidnumbr-1.0.0/sweidnumbr/vignettes/sweidnumbr.md |only 41 files changed, 210 insertions(+), 193 deletions(-)
Title: Plot the Effects of Variables in Interaction Terms
Description: Plots the conditional coefficients ("marginal effects") of
variables included in multiplicative interaction terms.
Author: Frederick Solt <frederick-solt@uiowa.edu>, Yue Hu <yue-hu-1@uiowa.edu>
Maintainer: Yue Hu <yue-hu-1@uiowa.edu>
Diff between interplot versions 0.1.0.2 dated 2015-07-23 and 0.1.1.0 dated 2015-12-23
DESCRIPTION | 10 - MD5 | 32 +-- NAMESPACE | 11 - R/Interplot.R | 40 ++-- R/Interplot_default.R | 183 ++++++++++++++++--- R/Interplot_mi.R | 352 +++++++++++++++++++++++++++++++------- R/Interplot_mlm.R | 348 +++++++++++++++++++++++++++++++------ R/Interplot_mlmmi.R | 361 +++++++++++++++++++++++++++++++-------- R/Interplot_plot.R | 31 +-- README.md | 5 man/interplot.Rd | 23 +- man/interplot.default.Rd | 4 man/interplot.lmerMod.Rd | 2 man/interplot.lmmi.Rd | 2 man/interplot.mlmmi.Rd | 2 man/interplot.plot.Rd | 2 vignettes/interplot-vignette.Rmd | 11 + 17 files changed, 1119 insertions(+), 300 deletions(-)
Title: Sparse and Non-Sparse Partial Robust M Regression and
Classification
Description: Robust dimension reduction methods for regression and discriminant analysis are implemented that yield estimates with a partial least squares alike interpretability. Partial robust M regression (PRM) is robust to both vertical outliers and leverage points. Sparse partial robust M regression (SPRM) is a related robust method with sparse coefficient estimate, and therefore with intrinsic variable selection. For bianry classification related discriminant methods are PRM-DA and SPRM-DA.
Author: Sven Serneels, BASF Corp and Irene Hoffmann
Maintainer: Irene Hoffmann <irene.hoffmann@tuwien.ac.at>
Diff between sprm versions 1.2 dated 2015-10-15 and 1.2.1 dated 2015-12-23
sprm-1.2.1/sprm/DESCRIPTION | 12 ++++----- sprm-1.2.1/sprm/MD5 | 44 ++++++++++++++---------------------- sprm-1.2.1/sprm/NAMESPACE | 11 ++++----- sprm-1.2.1/sprm/R/daprpr.R | 5 ++++ sprm-1.2.1/sprm/R/prmda.R | 2 - sprm-1.2.1/sprm/man/plot.prm.Rd | 6 ++-- sprm-1.2.1/sprm/man/plot.sprm.Rd | 6 +++- sprm-1.2.1/sprm/man/predict.prm.Rd | 5 +--- sprm-1.2.1/sprm/man/predict.sprm.Rd | 4 ++- sprm-1.2.1/sprm/man/prmda.Rd | 2 - sprm-1.2.1/sprm/man/prmdaCV.Rd | 3 -- sprm-1.2.1/sprm/man/prms.Rd | 6 ++-- sprm-1.2.1/sprm/man/prmsCV.Rd | 4 +-- sprm-1.2.1/sprm/man/sprm-package.Rd | 9 +++---- sprm-1.2.1/sprm/man/sprmdaCV.Rd | 3 -- sprm-1.2.1/sprm/man/sprms.Rd | 6 +++- sprm-1.2.1/sprm/man/sprmsCV.Rd | 4 ++- sprm-1.2.1/sprm/man/summary.prm.Rd | 4 +-- sprm-1.2.1/sprm/man/summary.sprm.Rd | 4 ++- sprm-1.2/sprm/R/biplot.prm.R |only sprm-1.2/sprm/R/biplot.prmda.R |only sprm-1.2/sprm/R/biplot.sprm.R |only sprm-1.2/sprm/R/biplot.sprmda.R |only sprm-1.2/sprm/man/biplot.prm.Rd |only sprm-1.2/sprm/man/biplot.prmda.Rd |only sprm-1.2/sprm/man/biplot.sprm.Rd |only sprm-1.2/sprm/man/biplot.sprmda.Rd |only 27 files changed, 71 insertions(+), 69 deletions(-)
Title: Topological Analysis of Knotted Proteins, Biopolymers and 3D
Structures
Description: Contains functions for the topological analysis of polymers, with a focus on protein structures.
Author: Federico Comoglio and Maurizio Rinaldi
Maintainer: Federico Comoglio <federico.comoglio@gmail.com>
Diff between Rknots versions 1.3.0 dated 2015-12-22 and 1.3.1 dated 2015-12-23
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- R/makeExamples.R | 2 +- inst/doc/Rknots_vignette.R | 2 +- inst/doc/Rknots_vignette.Rmd | 2 +- inst/doc/Rknots_vignette.html | 8 ++++---- man/skeinIterator.Rd | 2 -- vignettes/Rknots_vignette.Rmd | 2 +- 8 files changed, 20 insertions(+), 22 deletions(-)
Title: Variance Estimation for Sample Surveys by the Ultimate Cluster
Method
Description: Generation of domain variables, linearisation of several nonlinear population statistics (the ratio of two totals, weighted income percentile, relative median income ratio, at-risk-of-poverty rate, at-risk-of-poverty threshold, Gini coefficient, gender pay gap, the aggregate replacement ratio, the relative median income ratio, median income below at-risk-of-poverty gap, income quintile share ratio, relative median at-risk-of-poverty gap), computation of regression residuals in case of weight calibration, variance estimation of sample surveys by the ultimate cluster method (Hansen, Hurwitz and Madow, 1953), variance estimation for longitudinal, cross-sectional measures and measures of change for single and multistage stage cluster sampling designs (Berger, Y.G.). Several other precision measures are derived - standard error, the coefficient of variation, the margin of error, confidence interval, design effect.
Author: Juris Breidaks [aut, cre],
Martins Liberts [aut],
Santa Ivanova [aut]
Maintainer: Juris Breidaks <Juris.Breidaks@csb.gov.lv>
Diff between vardpoor versions 0.4.6 dated 2015-10-08 and 0.4.8 dated 2015-12-23
DESCRIPTION | 12 MD5 | 88 ++-- R/domain.R | 14 R/incPercentile.R | 2 R/linarpr.R | 11 R/linarpt.R | 13 R/linarr.R | 6 R/linpoormed.R | 11 R/linqsr.R | 4 R/linrmir.R | 6 R/linrmpg.R | 11 R/vardchanges.R | 205 ++++----- R/vardchangespoor.R | 247 +++++------ R/vardcros.R | 1014 +++++++++++++++++++++++------------------------- R/vardcrospoor.R | 479 +++++++++++----------- R/vardom.R | 20 R/vardom_othstr.R | 8 R/vardomh.R | 16 R/variance_othstr.R | 58 ++ R/varpoord.R | 29 - inst/CITATION | 4 inst/NEWS | 4 man/domain.Rd | 7 man/incPercentile.Rd | 10 man/linarpr.Rd | 16 man/linarpt.Rd | 12 man/linarr.Rd | 20 man/lingini.Rd | 12 man/lingini2.Rd | 12 man/lingpg.Rd | 14 man/linpoormed.Rd | 12 man/linqsr.Rd | 12 man/linrmir.Rd | 14 man/linrmpg.Rd | 12 man/vardchanges.Rd | 43 +- man/vardchangespoor.Rd | 49 +- man/vardcros.Rd | 20 man/vardcrospoor.Rd | 31 - man/vardom.Rd | 26 - man/vardom_othstr.Rd | 22 - man/vardomh.Rd | 32 - man/vardpoor-package.Rd | 4 man/variance_est.Rd | 10 man/variance_othstr.Rd | 3 man/varpoord.Rd | 48 +- 45 files changed, 1378 insertions(+), 1325 deletions(-)
Title: Survey Planning Tools
Description: Tools for sample survey planning, including sample size calculation, estimation of expected precision for the estimates of totals, and calculation of optimal sample size allocation.
Author: Juris Breidaks [aut, cre],
Martins Liberts [aut],
Janis Jukams [aut]
Maintainer: Juris Breidaks <rcsb@csb.gov.lv>
Diff between surveyplanning versions 0.8 dated 2015-11-30 and 1.0 dated 2015-12-23
DESCRIPTION | 8 +++--- MD5 | 18 +++++++------- R/dom_optimal_allocation.R | 53 ++++++++++++++++++++++++++++-------------- R/expvar.R | 14 ----------- R/optsize.R | 47 ++++++++++++++++++++++--------------- man/dom_optimal_allocation.Rd | 18 ++++++++------ man/expsize.Rd | 5 ++- man/expvar.Rd | 10 +++---- man/optsize.Rd | 10 +++++-- man/surveyplanning-package.Rd | 4 +-- 10 files changed, 107 insertions(+), 80 deletions(-)
More information about surveyplanning at CRAN
Permanent link
Title: Hidden Markov Models for Life Sequences and Other Multivariate,
Multichannel Categorical Time Series
Description: Designed for fitting hidden (latent)
Markov models and mixture hidden Markov models for social
sequence data and other categorical time series. Also some more restricted
versions of these type of models are available: Markov models, mixture
Markov models, and latent class models. The package supports models for one or
multiple subjects with one or multiple parallel sequences (channels). External
covariates can be added to explain cluster membership in mixture models. The
package provides functions for evaluating and comparing models, as well as
functions for easy plotting of multichannel sequence data and hidden Markov
models. Models are estimated using maximum likelihood via the EM algorithm and/or
direct numerical maximization with analytical gradients.
All main algorithms are written in C++ with support for parallel computation.
Author: Jouni Helske, Satu Helske
Maintainer: Jouni Helske <jouni.helske@jyu.fi>
Diff between seqHMM versions 1.0.2-1 dated 2015-12-19 and 1.0.3 dated 2015-12-23
DESCRIPTION | 10 MD5 | 133 ++-- NEWS |only R/HMMplot.R | 35 - R/RcppExports.R | 36 - R/build_hmm.R | 152 ++-- R/build_lcm.R | 1 R/build_mhmm.R | 179 ++--- R/build_mm.R | 213 +++--- R/build_mmm.R | 335 +++++----- R/colorpalette.R | 20 R/fit_model.R | 11 R/gridplot.R | 315 +++++---- R/help_data.R | 182 ++--- R/mc_to_sc.R | 431 ++++++------- R/mhmm_biofam.R | 330 +++++----- R/mhmm_mvad.R | 180 ++--- R/mssplot.R | 256 +++---- R/plot.hmm.R | 1142 +++++++++++++++++------------------ R/plot.mhmm.R | 199 +++--- R/plot.ssp.R | 86 +- R/separate_mhmm.R | 72 +- R/seqHMM-package.R | 69 +- R/ssp.R | 1386 +++++++++++++++++++++---------------------- R/ssplot.R | 470 +++++++------- R/summary.mhmm.R | 224 +++--- R/trim_hmm.R | 562 ++++++++--------- build/vignette.rds |binary inst/doc/seqHMM.R | 692 ++++++++++----------- inst/doc/seqHMM.pdf |binary man/biofam3c.Rd | 338 +++++----- man/build_hmm.Rd | 319 ++++----- man/build_mhmm.Rd | 444 ++++++------- man/colorpalette.Rd | 62 - man/gridplot.Rd | 280 ++++---- man/mc_to_sc.Rd | 88 +- man/mhmm_biofam.Rd | 330 +++++----- man/mhmm_mvad.Rd | 180 ++--- man/mssplot.Rd | 364 +++++------ man/plot.hmm.Rd | 480 +++++++------- man/plot.mhmm.Rd | 411 ++++++------ man/plot.ssp.Rd | 86 +- man/separate_mhmm.Rd | 68 +- man/seqHMM-deprecated.Rd | 256 +++---- man/ssp.Rd | 476 +++++++------- man/ssplot.Rd | 458 +++++++------- man/summary.mhmm.Rd | 128 +-- man/trim_model.Rd | 86 +- src/EM.cpp | 2 src/EMx.cpp | 2 src/RcppExports.cpp | 130 ++-- src/forwardbackward.cpp | 4 src/forwardbackwardx.cpp | 4 src/logLikHMM.cpp | 4 src/logLikMixHMM.cpp | 4 src/log_EM.cpp | 2 src/log_EMx.cpp | 2 src/log_forwardbackward.cpp | 2 src/log_forwardbackwardx.cpp | 2 src/log_logLikHMM.cpp | 2 src/log_logLikMixHMM.cpp | 2 src/log_objective.cpp | 16 src/log_objectivex.cpp | 258 +++----- src/objective.cpp | 60 - src/objectivex.cpp | 6 src/varcoef.cpp | 3 src/viterbi.cpp | 4 src/viterbix.cpp | 4 68 files changed, 6555 insertions(+), 6533 deletions(-)
Title: Gaussian Process Laboratory
Description: Gaussian Process models with customised covariance kernels.
Author: Yves Deville, David Ginsbourger, Olivier Roustant. Contributors: Nicolas Durrande.
Maintainer: Yves Deville <deville.yves@alpestat.com>
Diff between kergp versions 0.1.0 dated 2015-06-22 and 0.2.0 dated 2015-12-23
kergp-0.1.0/kergp/inst |only kergp-0.1.0/kergp/tests/test-all.R |only kergp-0.2.0/kergp/ChangeLog | 10 kergp-0.2.0/kergp/DESCRIPTION | 12 kergp-0.2.0/kergp/MD5 | 29 - kergp-0.2.0/kergp/NAMESPACE | 15 kergp-0.2.0/kergp/R/gp.R | 58 ++ kergp-0.2.0/kergp/R/logLikFuns.R | 299 ++++++------- kergp-0.2.0/kergp/R/methodGLS.R | 4 kergp-0.2.0/kergp/R/methodMLE.R | 18 kergp-0.2.0/kergp/man/gp.Rd | 739 ++++++++++++++++----------------- kergp-0.2.0/kergp/man/kergp-package.Rd | 432 +++++++++---------- kergp-0.2.0/kergp/tests/testthat |only 13 files changed, 839 insertions(+), 777 deletions(-)
Title: Big Data in-Database Analytics with Teradata Aster
Description: A consistent set of tools to perform in-database analytics
on Teradata Aster Big Data Discovery Platform. toaster (a.k.a 'to Aster')
embraces simple 2-step approach: compute in Aster - visualize and analyze
in R. Its `compute` functions use combination of SQL and
SQL/MR functions running in Aster database - highly scalable parallel
and distributed analytical platform. Then `create` functions visualize
results with boxplots, scatterplots, histograms, heatmaps, word clouds,
maps, or slope graphs. Advanced options such as faceting, coloring,
labeling, and others are supported with most functions.
Author: Gregory Kanevsky [aut, cre],
Nick Switanek [aut]
Maintainer: Gregory Kanevsky <gregory.kanevsky@teradata.com>
Diff between toaster versions 0.3.1 dated 2015-11-03 and 0.4.1 dated 2015-12-23
DESCRIPTION | 37 ++++----- MD5 | 87 +++++++++++++--------- NAMESPACE | 16 +++- NEWS | 26 ++++++ R/computeAggregates.R | 2 R/computeBarchart.R | 2 R/computeCorrelations.R | 3 R/computeHeatmap.R | 6 + R/computeHistogram.R | 2 R/computeKmeans.R |only R/computePercentiles.R | 2 R/computeSample.R | 7 + R/computeTfIdf.R | 30 +++++++ R/misc.R | 55 ++++++++++++++ R/plotting.R | 93 ++++++++++++++++-------- R/plottingKmeans.R |only R/toaster.R | 5 + R/utils.R | 115 ++++++++++++++++++++++++++++++ README.md | 3 demo/00Index | 1 demo/baseball-kmeans.R |only man/computeClusterSample.Rd |only man/computeCorrelations.Rd | 1 man/computeKmeans.Rd |only man/computeSilhouette.Rd |only man/createBoxplot.Rd | 17 ++-- man/createBubblechart.Rd | 22 ++++- man/createCentroidPlot.Rd |only man/createClusterPairsPlot.Rd |only man/createClusterPlot.Rd |only man/createHeatmap.Rd | 27 ++++++- man/createHistogram.Rd | 7 + man/createPopPyramid.Rd | 7 + man/createSilhouetteProfile.Rd |only man/createSlopegraph.Rd | 9 +- man/getNullCounts.Rd |only man/makeTempTableName.Rd |only tests/testthat/helper-tests.R | 8 ++ tests/testthat/test-computeAggregates.R | 3 tests/testthat/test-computeBarchart.R | 3 tests/testthat/test-computeCorrelations.R | 7 + tests/testthat/test-computeHeatmap.R | 6 + tests/testthat/test-computeHistogram.R | 7 + tests/testthat/test-computeKmeans.R |only tests/testthat/test-computePercentiles.R | 3 tests/testthat/test-computeSample.R | 3 tests/testthat/test-computeTf.R | 21 +++++ tests/testthat/test-computeTfIdf.R | 17 ++++ tests/testthat/test-createBoxplot.R | 2 tests/testthat/test-createClusterPlots.R |only tests/testthat/test-misc.R |only tests/testthat/test-utils.R | 44 +++++++++++ 52 files changed, 582 insertions(+), 124 deletions(-)
Title: Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests
Description: Comprehensive open-source toolbox for analysing spatial data, mainly Spatial Point Patterns, including multi-type/marked points and spatial covariates, in any two-dimensional spatial region. Also supports three-dimensional point patterns, space-time point patterns in any number of dimensions, and point patterns on a linear network.
Contains over 2000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference.
Data types include point patterns, line segment patterns, spatial windows, pixel images, tessellations, and linear networks.
Exploratory methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics, and kernel estimates of covariate effects. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Diggle-Cressie-Loosmore-Ford, Dao-Genton) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov) are also supported.
Parametric models can be fitted to point pattern data using the functions ppm(), kppm(), slrm(), dppm() similar to glm(). Types of models include Poisson, Gibbs and Cox point processes, Neyman-Scott cluster processes, and determinantal point processes. Models may involve dependence on covariates, inter-point interaction, cluster formation and dependence on marks. Models are fitted by maximum likelihood, logistic regression, minimum contrast, and composite likelihood methods.
A model can be fitted to a list of point patterns (replicated point pattern data) using the function mppm(). The model can include random effects and fixed effects depending on the experimental design, in addition to all the features listed above.
Fitted point process models can be simulated, automatically. Formal hypothesis tests of a fitted model are supported (likelihood ratio test, analysis of deviance, Monte Carlo tests) along with basic tools for model selection (stepwise(), AIC()). Tools for validating the fitted model include simulation envelopes, residuals, residual plots and Q-Q plots, leverage and influence diagnostics, partial residuals, and added variable plots.
Author: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>,
Rolf Turner <r.turner@auckland.ac.nz>
and Ege Rubak <rubak@math.aau.dk>,
with substantial contributions of code by
Kasper Klitgaard Berthelsen;
Ute Hahn;
Abdollah Jalilian;
Marie-Colette van Lieshout;
Tuomas Rajala;
Dominic Schuhmacher;
and
Rasmus Waagepetersen.
Additional contributions
by Q.W. Ang;
S. Azaele;
M. Baddeley;
C. Beale;
M. Bell;
R. Bernhardt;
T. Bendtsen;
A. Bevan;
B. Biggerstaff;
A. Bilgrau;
L. Bischof;
C. Biscio;
R. Bivand;
J.M. Blanco Moreno;
F. Bonneu;
J. Burgos;
S. Byers;
Y.M. Chang;
J.B. Chen;
I. Chernayavsky;
Y.C. Chin;
B. Christensen;
J.-F. Coeurjolly;
R. Corria Ainslie;
M. de la Cruz;
P. Dalgaard;
S. Das;
P.J. Diggle;
P. Donnelly;
I. Dryden;
S. Eglen;
A. El-Gabbas;
B. Fandohan;
O. Flores;
E.D. Ford;
P. Forbes;
S. Frank;
J. Franklin;
N. Funwi-Gabga;
O. Garcia;
A. Gault;
J. Geldmann;
M. Genton;
S. Ghalandarayeshi;
J. Gilbey;
J. Goldstick;
P. Grabarnik;
C. Graf;
U. Hahn;
A. Hardegen;
M.B. Hansen;
M. Hazelton;
J. Heikkinen;
M. Hering;
M. Herrmann;
K. Hingee;
K. Hornik;
P. Hunziker;
J. Hywood;
R. Ihaka;
A. Jammalamadaka;
R. John-Chandran;
D. Johnson;
M. Khanmohammadi;
R. Klaver;
P. Kovesi;
M. Kuhn;
J. Laake;
F. Lavancier;
T. Lawrence;
R.A. Lamb;
J. Lee;
G.P. Leser;
H.T. Li;
G. Limitsios;
A. Lister;
B. Madin;
M. Maechler;
J. Marcus;
K. Marchikanti;
R. Mark;
J. Mateu;
P. McCullagh;
U. Mehlig;
S. Meyer;
X.C. Mi;
L. De Middeleer;
R.K. Milne;
E. Miranda;
J. Moller;
E. Mudrak;
G.M. Nair;
N. Nava;
L.S. Nielsen;
F. Nunes;
J.R. Nyengaard;
J. Oehlschlaegel;
T. Onkelinx;
S. O'Riordan;
E. Parilov;
J. Picka;
N. Picard;
M. Porter;
S. Protsiv;
A. Raftery;
S. Rakshit;
B. Ramage;
P. Ramon;
X. Raynaud,
M. Reiter;
I. Renner;
T.O. Richardson;
B.D. Ripley;
E. Rosenbaum;
B. Rowlingson;
J. Rudokas;
J. Rudge;
C. Ryan;
F. Safavimanesh;
A. Sarkka;
C. Schank;
K. Schladitz;
S. Schutte;
B.T. Scott;
O. Semboli;
F. Semecurbe;
V. Shcherbakov;
G.C. Shen;
P. Shi;
H.-J. Ship;
I.-M. Sintorn;
Y. Song;
M. Spiess;
M. Stevenson;
K. Stucki;
M. Sumner;
P. Surovy;
B. Taylor;
T. Thorarinsdottir;
B. Turlach;
T. Tvedebrink;
K. Ummer;
M. Uppala;
A. van Burgel;
T. Verbeke;
M. Vihtakari;
A. Villers;
F. Vinatier;
S. Voss;
H. Wang;
H. Wendrock;
J. Wild;
C. Witthoft;
S. Wong;
M. Woringer;
M.E. Zamboni
and
A. Zeileis.
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat versions 1.43-0 dated 2015-10-08 and 1.44-0 dated 2015-12-23
DESCRIPTION | 25 MD5 | 2291 ++++++++++++----------- NAMESPACE | 59 NEWS | 197 ++ R/Gest.R | 2 R/Gmulti.R | 2 R/Hest.R | 42 R/Iest.R | 129 - R/Kcom.R | 2 R/Kmeasure.R | 18 R/Kmulti.R | 2 R/Tstat.R | 8 R/addvar.R | 2 R/allstats.R | 2 R/alltypes.R | 2 R/anova.mppm.R | 11 R/badgey.R | 2 R/beginner.R | 2 R/boundingbox.R | 9 R/bw.optim.R | 2 R/bw.ppl.R | 2 R/by.ppp.R | 2 R/clarkevans.R | 4 R/clickpoly.R | 2 R/clickppp.R | 2 R/close3Dpairs.R | 255 +- R/closepairs.R | 2 R/clusterinfo.R | 35 R/colourtables.R | 2 R/compareFit.R | 2 R/convexify.R |only R/covariates.R | 2 R/daogenton.R | 105 - R/dclftest.R | 138 + R/defaultwin.R | 2 R/deldir.R | 37 R/density.ppp.R | 7 R/detpointprocfamilyfun.R | 7 R/dg.R | 2 R/dgs.R | 2 R/diagnoseppm.R | 6 R/diagram.R | 2 R/distances.psp.R | 4 R/distcdf.R | 40 R/distfunlpp.R | 16 R/dppm.R | 2 R/dummy.R | 12 R/effectfun.R | 15 R/envelope.R | 103 - R/envelope3.R | 12 R/envelopelpp.R | 21 R/eval.fasp.R | 117 - R/eval.fv.R | 127 - R/eval.im.R | 86 R/evalcovar.R | 706 +++---- R/fardist.R | 2 R/fasp.R | 148 - R/fiksel.R | 2 R/formulae.R | 6 R/funxy.R | 2 R/fv.R | 363 ++- R/hardcore.R | 2 R/hybrid.R | 4 R/hybrid.family.R | 4 R/hyperframe.R | 16 R/hypersub.R | 26 R/idw.R | 2 R/infline.R | 6 R/intensity.R | 2 R/interact.R | 8 R/interactions.R | 127 - R/iplot.R | 2 R/iplotlayered.R | 4 R/ippm.R | 17 R/istat.R | 2 R/kppm.R | 119 - R/layered.R | 4 R/linearK.R | 2 R/lineardisc.R | 2 R/linearmrkcon.R | 42 R/linearpcf.R | 2 R/linequad.R | 211 +- R/linfun.R | 2 R/linim.R | 74 R/linnet.R | 6 R/lixellate.R |only R/logistic.R | 9 R/lpp.R | 10 R/lppm.R | 69 R/lurking.R | 577 +++-- R/markcorr.R | 2 R/marks.R | 2 R/measures.R | 29 R/mpl.R | 16 R/mppm.R | 916 ++++----- R/multihard.R | 2 R/nnclean.R | 2 R/nncorr.R | 22 R/nndistlpp.R | 351 ++- R/nnmark.R | 72 R/objsurf.R | 2 R/options.R | 22 R/ord.R | 2 R/ord.family.R | 2 R/ordthresh.R | 2 R/pairpiece.R | 2 R/pairs.im.R | 2 R/pairwise.R | 2 R/plot.anylist.R | 16 R/plot.fv.R | 17 R/plot.owin.R | 7 R/plot.ppp.R | 4 R/plot3d.R | 2 R/poisson.R | 2 R/pp3.R | 2 R/ppmclass.R | 45 R/ppqq.R | 93 R/ppx.R | 101 - R/predictmppm.R | 676 +++---- R/profilepl.R | 6 R/progress.R | 226 +- R/psp.R | 5 R/pspcross.R | 2 R/psstG.R | 2 R/quadratcount.R | 24 R/quadratresample.R | 5 R/quadrattest.R | 14 R/quadscheme.R | 2 R/rPerfect.R | 87 R/random.R | 102 - R/randomNS.R | 2 R/randommk.R | 10 R/randomtess.R | 2 R/reduceformula.R | 60 R/relrisk.ppm.R | 24 R/residppm.R | 2 R/resolve.defaults.R | 2 R/rhohat.R | 2 R/rmh.default.R | 16 R/rmhcontrol.R | 2 R/rmhmodel.R | 55 R/rmhmodel.ppm.R | 10 R/rmhtemper.R | 2 R/satpiece.R | 2 R/saturated.R | 2 R/sigtrace.R | 30 R/slrm.R | 27 R/smooth.ppp.R | 8 R/softcore.R | 2 R/split.ppx.R | 2 R/stienen.R | 2 R/strauss.R | 2 R/strausshard.R | 2 R/studpermutest.R | 7 R/summary.quad.R | 92 R/superimpose.R | 5 R/symbolmap.R | 6 R/terse.R | 14 R/tess.R | 34 R/texture.R | 2 R/treebranches.R | 2 R/triangulate.R | 26 R/triplets.R | 2 R/unique.ppp.R | 6 R/update.ppm.R | 2 R/util.R | 92 R/varblock.R | 14 R/varcount.R |only R/window.R | 35 R/wingeom.R | 7 R/xysegment.R | 2 R/zclustermodel.R |only build/vignette.rds |binary data/Kovesi.rda |binary data/amacrine.rda |binary data/anemones.rda |binary data/ants.rda |binary data/austates.rda |binary data/bdspots.rda |binary data/bei.rda |binary data/betacells.rda |binary data/bramblecanes.rda |binary data/bronzefilter.rda |binary data/cells.rda |binary data/chicago.rda |binary data/chorley.rda |binary data/clmfires.rda |binary data/copper.rda |binary data/demohyper.rda |binary data/demopat.rda |binary data/dendrite.rda |binary data/finpines.rda |binary data/flu.rda |binary data/ganglia.rda |binary data/gordon.rda |binary data/gorillas.rda |binary data/hamster.rda |binary data/heather.rda |binary data/humberside.rda |binary data/hyytiala.rda |binary data/japanesepines.rda |binary data/lansing.rda |binary data/letterR.rda |binary data/longleaf.rda |binary data/mucosa.rda |binary data/murchison.rda |binary data/nbfires.rda |binary data/nztrees.rda |binary data/osteo.rda |binary data/paracou.rda |binary data/ponderosa.rda |binary data/pyramidal.rda |binary data/redwood.rda |binary data/redwoodfull.rda |binary data/residualspaper.rda |binary data/shapley.rda |binary data/simba.rda |binary data/simdat.rda |binary data/simplenet.rda |binary data/spiders.rda |binary data/sporophores.rda |binary data/spruces.rda |binary data/swedishpines.rda |binary data/urkiola.rda |binary data/vesicles.rda |binary data/waka.rda |binary data/waterstriders.rda |binary demo/spatstat.R | 5 demo/sumfun.R | 2 inst/doc/datasets.pdf |binary inst/doc/getstart.pdf |binary inst/doc/replicated.pdf |binary inst/doc/shapefiles.pdf |binary inst/doc/updates.R | 22 inst/doc/updates.Rnw | 3752 ++++----------------------------------- inst/doc/updates.pdf |binary man/AreaInter.Rd | 9 man/BadGey.Rd | 9 man/CDF.Rd | 10 man/Concom.Rd | 9 man/DiggleGatesStibbard.Rd | 15 man/DiggleGratton.Rd | 9 man/Emark.Rd | 11 man/Extract.anylist.Rd | 9 man/Extract.fasp.Rd | 10 man/Extract.fv.Rd | 9 man/Extract.hyperframe.Rd | 9 man/Extract.im.Rd | 9 man/Extract.influence.ppm.Rd | 9 man/Extract.layered.Rd | 9 man/Extract.leverage.ppm.Rd | 9 man/Extract.linnet.Rd | 9 man/Extract.listof.Rd | 9 man/Extract.lpp.Rd | 9 man/Extract.msr.Rd | 9 man/Extract.owin.Rd | 9 man/Extract.ppp.Rd | 9 man/Extract.ppx.Rd | 40 man/Extract.psp.Rd | 9 man/Extract.quad.Rd | 10 man/Extract.solist.Rd | 11 man/Extract.splitppp.Rd | 9 man/Extract.tess.Rd | 10 man/F3est.Rd | 6 man/Fest.Rd | 10 man/Fiksel.Rd | 9 man/Finhom.Rd | 8 man/Frame.Rd | 14 man/G3est.Rd | 6 man/Gcom.Rd | 8 man/Gcross.Rd | 10 man/Gdot.Rd | 10 man/Gest.Rd | 10 man/Geyer.Rd | 10 man/Gfox.Rd | 6 man/Ginhom.Rd | 8 man/Gmulti.Rd | 10 man/Gres.Rd | 8 man/Hardcore.Rd | 10 man/Hest.Rd | 41 man/HierHard.Rd | 12 man/HierStrauss.Rd | 12 man/HierStraussHard.Rd | 12 man/Hybrid.Rd | 10 man/Iest.Rd | 10 man/Jcross.Rd | 10 man/Jdot.Rd | 10 man/Jest.Rd | 10 man/Jinhom.Rd | 8 man/Jmulti.Rd | 10 man/K3est.Rd | 6 man/Kcom.Rd | 8 man/Kcross.Rd | 10 man/Kcross.inhom.Rd | 10 man/Kdot.Rd | 10 man/Kdot.inhom.Rd | 10 man/Kest.Rd | 7 man/Kest.fft.Rd | 23 man/Kinhom.Rd | 10 man/Kmark.Rd | 10 man/Kmeasure.Rd | 10 man/Kmodel.Rd | 10 man/Kmodel.dppm.Rd | 14 man/Kmodel.kppm.Rd | 10 man/Kmodel.ppm.Rd | 6 man/Kmulti.Rd | 10 man/Kmulti.inhom.Rd | 10 man/Kres.Rd | 8 man/Kscaled.Rd | 10 man/Ksector.Rd | 14 man/LambertW.Rd | 10 man/Lcross.Rd | 10 man/Lcross.inhom.Rd | 10 man/Ldot.Rd | 10 man/Ldot.inhom.Rd | 10 man/LennardJones.Rd | 10 man/Lest.Rd | 10 man/Linhom.Rd | 10 man/Math.im.Rd | 14 man/Math.linim.Rd | 14 man/MultiHard.Rd | 12 man/MultiStrauss.Rd | 12 man/MultiStraussHard.Rd | 12 man/Ord.Rd | 10 man/OrdThresh.Rd | 10 man/PPversion.Rd | 11 man/PairPiece.Rd | 10 man/Pairwise.Rd | 10 man/Penttinen.Rd | 10 man/Poisson.Rd | 10 man/Replace.im.Rd | 10 man/SatPiece.Rd | 10 man/Saturated.Rd | 10 man/Smooth.Rd | 10 man/Smooth.fv.Rd | 10 man/Smooth.msr.Rd | 6 man/Smooth.ppp.Rd | 7 man/Smoothfun.ppp.Rd | 12 man/Softcore.Rd | 10 man/Strauss.Rd | 12 man/StraussHard.Rd | 12 man/Triplets.Rd | 10 man/Tstat.Rd | 6 man/Window.Rd | 14 man/WindowOnly.Rd | 12 man/adaptive.density.Rd | 17 man/add.texture.Rd | 9 man/addvar.Rd | 7 man/affine.Rd | 10 man/affine.im.Rd | 10 man/affine.linnet.Rd | 10 man/affine.lpp.Rd | 10 man/affine.owin.Rd | 10 man/affine.ppp.Rd | 10 man/affine.psp.Rd | 10 man/affine.tess.Rd | 10 man/allstats.Rd | 10 man/alltypes.Rd | 10 man/angles.psp.Rd | 10 man/anova.lppm.Rd | 6 man/anova.mppm.Rd | 16 man/anova.ppm.Rd | 10 man/anova.slrm.Rd | 8 man/ants.Rd | 2 man/anylist.Rd | 14 man/append.psp.Rd | 10 man/applynbd.Rd | 10 man/area.owin.Rd | 10 man/areaGain.Rd | 10 man/areaLoss.Rd | 10 man/as.box3.Rd | 10 man/as.boxx.Rd | 14 man/as.data.frame.hyperframe.Rd | 10 man/as.data.frame.im.Rd | 10 man/as.data.frame.owin.Rd | 14 man/as.data.frame.ppp.Rd | 10 man/as.data.frame.psp.Rd | 10 man/as.function.fv.Rd | 10 man/as.function.im.Rd | 14 man/as.fv.Rd | 13 man/as.hyperframe.Rd | 10 man/as.hyperframe.ppx.Rd | 10 man/as.im.Rd | 10 man/as.interact.Rd | 10 man/as.layered.Rd | 14 man/as.linim.Rd | 9 man/as.linnet.linim.Rd | 14 man/as.linnet.psp.Rd | 14 man/as.lpp.Rd | 10 man/as.mask.Rd | 10 man/as.mask.psp.Rd | 10 man/as.matrix.im.Rd | 10 man/as.matrix.owin.Rd | 10 man/as.owin.Rd | 14 man/as.polygonal.Rd | 24 man/as.ppm.Rd | 14 man/as.ppp.Rd | 10 man/as.psp.Rd | 10 man/as.rectangle.Rd | 10 man/as.solist.Rd | 14 man/as.tess.Rd | 10 man/auc.Rd | 14 man/bdist.pixels.Rd | 10 man/bdist.points.Rd | 10 man/bdist.tiles.Rd | 10 man/beachcolours.Rd | 10 man/beginner.Rd | 10 man/begins.Rd | 14 man/berman.test.Rd | 12 man/bind.fv.Rd | 10 man/blur.Rd | 10 man/border.Rd | 10 man/bounding.box.xy.Rd | 10 man/boundingbox.Rd | 10 man/box3.Rd | 10 man/boxx.Rd | 10 man/branchlabelfun.Rd | 14 man/bw.diggle.Rd | 10 man/bw.frac.Rd | 10 man/bw.ppl.Rd | 10 man/bw.relrisk.Rd | 10 man/bw.scott.Rd | 10 man/bw.smoothppp.Rd | 10 man/bw.stoyan.Rd | 10 man/by.im.Rd | 10 man/by.ppp.Rd | 10 man/cauchy.estK.Rd | 6 man/cauchy.estpcf.Rd | 6 man/cbind.hyperframe.Rd | 10 man/cdf.test.Rd | 10 man/cdf.test.mppm.Rd | 16 man/centroid.owin.Rd | 12 man/chicago.Rd | 2 man/chop.tess.Rd | 10 man/chorley.Rd | 2 man/circdensity.Rd | 14 man/circumradius.Rd | 4 man/clarkevans.Rd | 6 man/clarkevans.test.Rd | 6 man/clickbox.Rd | 10 man/clickdist.Rd | 14 man/clickjoin.Rd | 4 man/clickpoly.Rd | 10 man/clickppp.Rd | 10 man/clip.infline.Rd | 10 man/closepairs.Rd | 10 man/closepairs.pp3.Rd | 12 man/closing.Rd | 10 man/clusterfield.Rd | 14 man/clusterfit.Rd | 14 man/clusterkernel.Rd | 14 man/clusterradius.Rd | 14 man/clusterset.Rd | 10 man/coef.mppm.Rd | 16 man/coef.ppm.Rd | 10 man/coef.slrm.Rd | 8 man/collapse.fv.Rd | 10 man/colourmap.Rd | 10 man/colourtools.Rd | 10 man/commonGrid.Rd | 10 man/compareFit.Rd | 8 man/compatible.Rd | 10 man/compatible.fasp.Rd | 10 man/compatible.fv.Rd | 10 man/compatible.im.Rd | 10 man/complement.owin.Rd | 10 man/concatxy.Rd | 10 man/connected.Rd | 10 man/connected.ppp.Rd | 10 man/contour.im.Rd | 14 man/contour.imlist.Rd | 14 man/convexhull.Rd | 10 man/convexhull.xy.Rd | 10 man/convexify.Rd |only man/convolve.im.Rd | 10 man/coords.Rd | 10 man/copyExampleFiles.Rd | 14 man/corners.Rd | 10 man/crossdist.Rd | 6 man/crossdist.default.Rd | 6 man/crossdist.lpp.Rd | 6 man/crossdist.pp3.Rd | 6 man/crossdist.ppp.Rd | 6 man/crossdist.ppx.Rd | 6 man/crossdist.psp.Rd | 10 man/crossing.psp.Rd | 10 man/cut.im.Rd | 10 man/cut.ppp.Rd | 10 man/data.ppm.Rd | 10 man/dclf.progress.Rd | 21 man/dclf.sigtrace.Rd | 38 man/dclf.test.Rd | 46 man/default.dummy.Rd | 10 man/default.expand.Rd | 10 man/default.rmhcontrol.Rd | 10 man/delaunay.Rd | 14 man/delaunayDistance.Rd | 14 man/delaunayNetwork.Rd | 14 man/deletebranch.Rd | 14 man/deltametric.Rd | 10 man/demohyper.Rd | 2 man/demopat.Rd | 2 man/density.lpp.Rd | 2 man/density.ppp.Rd | 22 man/density.psp.Rd | 10 man/density.splitppp.Rd | 10 man/deriv.fv.Rd | 10 man/detpointprocfamilyfun.Rd | 14 man/dfbetas.ppm.Rd | 6 man/dg.envelope.Rd | 24 man/dg.progress.Rd | 46 man/dg.sigtrace.Rd | 45 man/dg.test.Rd | 47 man/diagnose.ppm.Rd | 10 man/diameter.Rd | 10 man/diameter.box3.Rd | 10 man/diameter.boxx.Rd | 10 man/diameter.linnet.Rd | 4 man/diameter.owin.Rd | 10 man/dilated.areas.Rd | 10 man/dilation.Rd | 10 man/dim.detpointprocfamily.Rd | 14 man/dirichlet.Rd | 10 man/dirichletAreas.Rd | 14 man/dirichletVertices.Rd | 14 man/dirichletWeights.Rd | 10 man/disc.Rd | 10 man/discpartarea.Rd | 10 man/discretise.Rd | 10 man/discs.Rd | 14 man/distcdf.Rd | 13 man/distfun.Rd | 10 man/distfun.lpp.Rd | 16 man/distmap.Rd | 10 man/distmap.owin.Rd | 10 man/distmap.ppp.Rd | 10 man/distmap.psp.Rd | 10 man/dkernel.Rd | 4 man/dmixpois.Rd | 12 man/domain.Rd | 14 man/dppBessel.Rd | 10 man/dppCauchy.Rd | 14 man/dppGauss.Rd | 14 man/dppMatern.Rd | 14 man/dppPowerExp.Rd | 14 man/dppapproxkernel.Rd | 14 man/dppapproxpcf.Rd | 14 man/dppeigen.Rd | 14 man/dppkernel.Rd | 14 man/dppm.Rd | 16 man/dppparbounds.Rd | 14 man/dppspecden.Rd | 14 man/dppspecdenrange.Rd | 14 man/dummify.Rd | 4 man/dummy.ppm.Rd | 10 man/duplicated.ppp.Rd | 10 man/edge.Ripley.Rd | 10 man/edge.Trans.Rd | 10 man/edges.Rd | 12 man/edges2triangles.Rd | 10 man/edges2vees.Rd | 10 man/edit.hyperframe.Rd | 14 man/edit.ppp.Rd | 14 man/eem.Rd | 10 man/effectfun.Rd | 10 man/ellipse.Rd | 10 man/emend.Rd | 14 man/emend.ppm.Rd | 10 man/endpoints.psp.Rd | 10 man/envelope.Rd | 58 man/envelope.envelope.Rd | 10 man/envelope.lpp.Rd | 29 man/envelope.pp3.Rd | 28 man/eroded.areas.Rd | 10 man/erosion.Rd | 10 man/eval.fasp.Rd | 10 man/eval.fv.Rd | 10 man/eval.im.Rd | 10 man/eval.linim.Rd | 10 man/ewcdf.Rd | 10 man/exactMPLEstrauss.Rd | 10 man/expand.owin.Rd | 10 man/fardist.Rd | 14 man/fasp.object.Rd | 10 man/fitin.Rd | 10 man/fitted.lppm.Rd | 14 man/fitted.mppm.Rd | 16 man/fitted.ppm.Rd | 10 man/fitted.slrm.Rd | 8 man/fixef.mppm.Rd | 16 man/flipxy.Rd | 10 man/foo.Rd | 14 man/formula.fv.Rd | 10 man/formula.ppm.Rd | 6 man/fourierbasis.Rd | 14 man/fryplot.Rd | 10 man/funxy.Rd | 10 man/fv.Rd | 10 man/fv.object.Rd | 10 man/fvnames.Rd | 10 man/gauss.hermite.Rd | 12 man/gridcentres.Rd | 10 man/gridweights.Rd | 10 man/grow.boxx.Rd |only man/grow.rectangle.Rd | 12 man/harmonic.Rd | 10 man/harmonise.Rd | 12 man/harmonise.fv.Rd | 12 man/harmonise.im.Rd | 10 man/harmonise.owin.Rd | 10 man/heather.Rd | 4 man/hextess.Rd | 10 man/hierpair.family.Rd | 12 man/hist.im.Rd | 10 man/hopskel.Rd | 14 man/humberside.Rd | 2 man/hybrid.family.Rd | 10 man/hyperframe.Rd | 10 man/identify.ppp.Rd | 10 man/identify.psp.Rd | 10 man/idw.Rd | 10 man/im.Rd | 10 man/im.apply.Rd | 10 man/im.object.Rd | 10 man/imcov.Rd | 10 man/improve.kppm.Rd | 10 man/incircle.Rd | 10 man/increment.fv.Rd | 14 man/infline.Rd | 10 man/influence.ppm.Rd | 6 man/inforder.family.Rd | 10 man/inside.boxx.Rd |only man/inside.owin.Rd | 10 man/integral.im.Rd | 14 man/integral.linim.Rd | 14 man/integral.msr.Rd | 14 man/intensity.Rd | 10 man/intensity.dppm.Rd | 14 man/intensity.lpp.Rd | 10 man/intensity.ppm.Rd | 6 man/intensity.ppp.Rd | 10 man/intensity.ppx.Rd | 14 man/intensity.quadratcount.Rd | 10 man/interp.colourmap.Rd | 10 man/interp.im.Rd | 10 man/intersect.owin.Rd | 14 man/intersect.tess.Rd | 10 man/invoke.symbolmap.Rd | 12 man/iplot.Rd | 10 man/ippm.Rd | 10 man/is.convex.Rd | 10 man/is.dppm.Rd | 6 man/is.empty.Rd | 10 man/is.hybrid.Rd | 10 man/is.im.Rd | 10 man/is.lpp.Rd | 10 man/is.marked.Rd | 10 man/is.marked.ppm.Rd | 10 man/is.marked.ppp.Rd | 10 man/is.multitype.Rd | 10 man/is.multitype.ppm.Rd | 10 man/is.multitype.ppp.Rd | 10 man/is.owin.Rd | 10 man/is.ppm.Rd | 10 man/is.ppp.Rd | 10 man/is.rectangle.Rd | 10 man/is.stationary.Rd | 14 man/is.subset.owin.Rd | 10 man/istat.Rd | 10 man/kaplan.meier.Rd | 10 man/kernel.factor.Rd | 4 man/km.rs.Rd | 10 man/kppm.Rd | 15 man/latest.news.Rd | 10 man/layered.Rd | 10 man/layerplotargs.Rd | 10 man/layout.boxes.Rd | 10 man/lengths.psp.Rd | 10 man/letterR.Rd | 2 man/levelset.Rd | 10 man/leverage.ppm.Rd | 6 man/lgcp.estK.Rd | 8 man/lgcp.estpcf.Rd | 8 man/linearK.Rd | 6 man/linearKcross.Rd | 6 man/linearKcross.inhom.Rd | 6 man/linearKdot.Rd | 6 man/linearKdot.inhom.Rd | 6 man/linearKinhom.Rd | 6 man/lineardisc.Rd | 6 man/linearmarkconnect.Rd | 6 man/linearmarkequal.Rd | 6 man/linearpcf.Rd | 6 man/linearpcfcross.Rd | 6 man/linearpcfcross.inhom.Rd | 6 man/linearpcfdot.Rd | 6 man/linearpcfdot.inhom.Rd | 6 man/linearpcfinhom.Rd | 6 man/linfun.Rd | 10 man/linim.Rd | 6 man/linnet.Rd | 4 man/lixellate.Rd |only man/localK.Rd | 10 man/localKinhom.Rd | 10 man/localpcf.Rd | 10 man/logLik.dppm.Rd | 14 man/logLik.kppm.Rd | 14 man/logLik.mppm.Rd | 16 man/logLik.ppm.Rd | 38 man/logLik.slrm.Rd | 8 man/lohboot.Rd | 10 man/lpp.Rd | 4 man/lppm.Rd | 6 man/lurking.Rd | 10 man/lut.Rd | 10 man/markconnect.Rd | 10 man/markcorr.Rd | 10 man/markcrosscorr.Rd | 14 man/marks.Rd | 10 man/marks.psp.Rd | 10 man/marks.tess.Rd | 14 man/markstat.Rd | 10 man/marktable.Rd | 10 man/markvario.Rd | 10 man/matclust.estK.Rd | 6 man/matclust.estpcf.Rd | 6 man/maxnndist.Rd | 8 man/mean.im.Rd | 10 man/mergeLevels.Rd | 14 man/methods.box3.Rd | 10 man/methods.boxx.Rd | 10 man/methods.dppm.Rd | 6 man/methods.fii.Rd | 6 man/methods.funxy.Rd | 10 man/methods.kppm.Rd | 6 man/methods.layered.Rd | 10 man/methods.linfun.Rd | 21 man/methods.linim.Rd | 23 man/methods.linnet.Rd | 15 man/methods.lpp.Rd | 16 man/methods.lppm.Rd | 39 man/methods.objsurf.Rd | 8 man/methods.pp3.Rd | 10 man/methods.ppx.Rd | 10 man/methods.rho2hat.Rd | 6 man/methods.rhohat.Rd | 6 man/methods.slrm.Rd | 6 man/methods.units.Rd | 10 man/methods.zclustermodel.Rd |only man/midpoints.psp.Rd | 10 man/mincontrast.Rd | 6 man/miplot.Rd | 10 man/model.depends.Rd | 10 man/model.frame.ppm.Rd | 14 man/model.images.Rd | 14 man/model.matrix.ppm.Rd | 14 man/model.matrix.slrm.Rd | 10 man/moribund.Rd | 12 man/mppm.Rd | 14 man/msr.Rd | 6 man/multiplicity.ppp.Rd | 10 man/nearest.raster.point.Rd | 10 man/nearestsegment.Rd | 10 man/nestsplit.Rd | 14 man/nnclean.Rd | 2 man/nncorr.Rd | 10 man/nncross.Rd | 10 man/nncross.lpp.Rd | 30 man/nncross.pp3.Rd | 10 man/nndensity.Rd | 10 man/nndist.Rd | 6 man/nndist.lpp.Rd | 15 man/nndist.pp3.Rd | 6 man/nndist.ppx.Rd | 6 man/nndist.psp.Rd | 10 man/nnfun.Rd | 10 man/nnfun.lpp.Rd | 10 man/nnmap.Rd | 10 man/nnmark.Rd | 14 man/nnorient.Rd | 12 man/nnwhich.Rd | 6 man/nnwhich.lpp.Rd | 14 man/nnwhich.pp3.Rd | 6 man/nnwhich.ppx.Rd | 6 man/npfun.Rd | 8 man/npoints.Rd | 10 man/nsegments.Rd | 26 man/objsurf.Rd | 2 man/opening.Rd | 10 man/ord.family.Rd | 10 man/osteo.Rd | 2 man/overlap.owin.Rd | 10 man/owin.Rd | 10 man/owin.object.Rd | 10 man/padimage.Rd | 14 man/pairdist.Rd | 6 man/pairdist.default.Rd | 6 man/pairdist.lpp.Rd | 6 man/pairdist.pp3.Rd | 6 man/pairdist.ppp.Rd | 6 man/pairdist.ppx.Rd | 6 man/pairdist.psp.Rd | 10 man/pairorient.Rd | 12 man/pairs.im.Rd | 10 man/pairsat.family.Rd | 10 man/pairwise.family.Rd | 10 man/panel.contour.Rd | 14 man/parameters.Rd | 14 man/parres.Rd | 10 man/pcf.Rd | 10 man/pcf.fasp.Rd | 10 man/pcf.fv.Rd | 10 man/pcf.ppp.Rd | 10 man/pcf3est.Rd | 6 man/pcfcross.Rd | 10 man/pcfcross.inhom.Rd | 10 man/pcfdot.Rd | 10 man/pcfdot.inhom.Rd | 10 man/pcfinhom.Rd | 10 man/pcfmulti.Rd | 10 man/perimeter.Rd | 10 man/periodify.Rd | 10 man/persp.im.Rd | 14 man/perspPoints.Rd | 14 man/pixelcentres.Rd | 12 man/pixellate.Rd | 10 man/pixellate.owin.Rd | 10 man/pixellate.ppp.Rd | 10 man/pixellate.psp.Rd | 14 man/pixelquad.Rd | 10 man/plot.anylist.Rd | 14 man/plot.bermantest.Rd | 12 man/plot.cdftest.Rd | 10 man/plot.colourmap.Rd | 10 man/plot.dppm.Rd | 10 man/plot.envelope.Rd | 10 man/plot.fasp.Rd | 10 man/plot.fv.Rd | 10 man/plot.hyperframe.Rd | 10 man/plot.im.Rd | 10 man/plot.imlist.Rd | 14 man/plot.influence.ppm.Rd | 6 man/plot.kppm.Rd | 28 man/plot.layered.Rd | 10 man/plot.leverage.ppm.Rd | 6 man/plot.linim.Rd | 6 man/plot.linnet.Rd | 4 man/plot.listof.Rd | 10 man/plot.lpp.Rd | 10 man/plot.lppm.Rd | 6 man/plot.mppm.Rd | 16 man/plot.msr.Rd | 10 man/plot.onearrow.Rd | 14 man/plot.owin.Rd | 10 man/plot.plotppm.Rd | 10 man/plot.pp3.Rd | 14 man/plot.ppm.Rd | 10 man/plot.ppp.Rd | 10 man/plot.psp.Rd | 10 man/plot.quad.Rd | 10 man/plot.quadratcount.Rd | 10 man/plot.quadrattest.Rd | 10 man/plot.scan.test.Rd | 10 man/plot.slrm.Rd | 8 man/plot.solist.Rd | 14 man/plot.splitppp.Rd | 10 man/plot.symbolmap.Rd | 12 man/plot.tess.Rd | 10 man/plot.textstring.Rd | 14 man/plot.texturemap.Rd | 12 man/plot.yardstick.Rd | 14 man/pointsOnLines.Rd | 10 man/pool.Rd | 10 man/pool.anylist.Rd | 14 man/pool.envelope.Rd | 10 man/pool.fasp.Rd | 10 man/pool.fv.Rd | 14 man/pool.quadrattest.Rd | 10 man/pool.rat.Rd | 10 man/pp3.Rd | 10 man/ppm.Rd | 113 - man/ppm.object.Rd | 10 man/ppm.ppp.Rd | 94 man/ppp.Rd | 10 man/ppp.object.Rd | 10 man/ppx.Rd | 10 man/predict.dppm.Rd | 14 man/predict.kppm.Rd | 10 man/predict.lppm.Rd | 4 man/predict.mppm.Rd | 16 man/predict.ppm.Rd | 8 man/predict.slrm.Rd | 8 man/print.im.Rd | 10 man/print.owin.Rd | 10 man/print.ppm.Rd | 10 man/print.ppp.Rd | 10 man/print.psp.Rd | 10 man/print.quad.Rd | 10 man/profilepl.Rd | 10 man/progressreport.Rd | 14 man/project2segment.Rd | 10 man/project2set.Rd | 14 man/pseudoR2.Rd |only man/psp.Rd | 10 man/psp.object.Rd | 10 man/psst.Rd | 8 man/psstA.Rd | 8 man/psstG.Rd | 8 man/qqplot.ppm.Rd | 10 man/quad.object.Rd | 10 man/quad.ppm.Rd | 10 man/quadrat.test.Rd | 10 man/quadrat.test.mppm.Rd | 16 man/quadrat.test.splitppp.Rd | 10 man/quadratcount.Rd | 10 man/quadratresample.Rd | 10 man/quadrats.Rd | 10 man/quadscheme.Rd | 10 man/quadscheme.logi.Rd | 12 man/quantess.Rd | 14 man/quantile.density.Rd | 14 man/quantile.ewcdf.Rd | 10 man/quantile.im.Rd | 10 man/quasirandom.Rd | 12 man/rCauchy.Rd | 6 man/rDGS.Rd | 18 man/rDiggleGratton.Rd | 22 man/rGaussPoisson.Rd | 10 man/rHardcore.Rd | 16 man/rLGCP.Rd | 10 man/rMatClust.Rd | 10 man/rMaternI.Rd | 19 man/rMaternII.Rd | 21 man/rMosaicField.Rd | 10 man/rMosaicSet.Rd | 10 man/rNeymanScott.Rd | 10 man/rPenttinen.Rd |only man/rPoissonCluster.Rd | 10 man/rQuasi.Rd | 12 man/rSSI.Rd | 14 man/rStrauss.Rd | 16 man/rStraussHard.Rd | 21 man/rThomas.Rd | 10 man/rVarGamma.Rd | 6 man/ranef.mppm.Rd | 16 man/range.fv.Rd | 8 man/raster.x.Rd | 12 man/rat.Rd | 10 man/rcell.Rd | 10 man/rcellnumber.Rd | 10 man/rdpp.Rd | 14 man/reach.Rd | 10 man/reach.dppm.Rd | 14 man/reduced.sample.Rd | 10 man/redwood.Rd | 2 man/redwoodfull.Rd | 2 man/reflect.Rd | 10 man/relevel.im.Rd | 14 man/reload.or.compute.Rd | 10 man/relrisk.Rd | 14 man/relrisk.ppm.Rd | 14 man/relrisk.ppp.Rd | 10 man/rescale.Rd | 10 man/rescale.im.Rd | 10 man/rescale.owin.Rd | 10 man/rescale.ppp.Rd | 10 man/rescale.psp.Rd | 10 man/rescue.rectangle.Rd | 10 man/residuals.dppm.Rd | 14 man/residuals.kppm.Rd | 14 man/residuals.mppm.Rd | 16 man/residuals.ppm.Rd | 10 man/residualspaper.Rd | 4 man/rgbim.Rd | 10 man/rho2hat.Rd | 2 man/rhohat.Rd | 26 man/ripras.Rd | 10 man/rjitter.Rd | 10 man/rknn.Rd | 10 man/rlabel.Rd | 10 man/rlinegrid.Rd | 10 man/rmh.Rd | 10 man/rmh.default.Rd | 10 man/rmh.ppm.Rd | 10 man/rmhcontrol.Rd | 10 man/rmhexpand.Rd | 10 man/rmhmodel.Rd | 10 man/rmhmodel.default.Rd | 45 man/rmhmodel.list.Rd | 10 man/rmhmodel.ppm.Rd | 42 man/rmhstart.Rd | 10 man/rmpoint.Rd | 10 man/rmpoispp.Rd | 10 man/rnoise.Rd | 14 man/roc.Rd | 14 man/rose.Rd | 14 man/rotate.Rd | 10 man/rotate.im.Rd | 10 man/rotate.owin.Rd | 10 man/rotate.ppp.Rd | 10 man/rotate.psp.Rd | 10 man/rotmean.Rd | 14 man/round.ppp.Rd | 10 man/rounding.Rd | 10 man/rpoint.Rd | 10 man/rpoisline.Rd | 10 man/rpoislinetess.Rd | 10 man/rpoislpp.Rd | 4 man/rpoispp.Rd | 21 man/rpoispp3.Rd | 10 man/rpoisppOnLines.Rd | 24 man/rpoisppx.Rd | 10 man/rshift.Rd | 10 man/rshift.ppp.Rd | 10 man/rshift.psp.Rd | 10 man/rshift.splitppp.Rd | 10 man/rstrat.Rd | 10 man/rsyst.Rd | 10 man/rtemper.Rd | 14 man/rthin.Rd | 10 man/run.simplepanel.Rd | 10 man/runifdisc.Rd | 10 man/runiflpp.Rd | 4 man/runifpoint.Rd | 10 man/runifpoint3.Rd | 10 man/runifpointOnLines.Rd | 10 man/runifpointx.Rd | 10 man/scalardilate.Rd | 10 man/scaletointerval.Rd | 10 man/scan.test.Rd | 10 man/scanLRTS.Rd | 10 man/scanpp.Rd | 10 man/segregation.test.Rd | 14 man/selfcrossing.psp.Rd | 10 man/selfcut.psp.Rd | 14 man/sessionLibs.Rd | 10 man/setcov.Rd | 10 man/sharpen.Rd | 10 man/shift.Rd | 10 man/shift.im.Rd | 10 man/shift.owin.Rd | 10 man/shift.ppp.Rd | 10 man/shift.psp.Rd | 10 man/sidelengths.owin.Rd | 10 man/simba.Rd | 2 man/simplenet.Rd | 2 man/simplepanel.Rd | 10 man/simplify.owin.Rd | 10 man/simulate.dppm.Rd | 14 man/simulate.kppm.Rd | 10 man/simulate.lppm.Rd | 12 man/simulate.ppm.Rd | 10 man/simulate.slrm.Rd | 10 man/slrm.Rd | 8 man/solapply.Rd | 14 man/solist.Rd | 14 man/solutionset.Rd | 10 man/spatdim.Rd | 14 man/spatialcdf.Rd | 14 man/spatstat-internal.Rd | 59 man/spatstat-package.Rd | 29 man/spatstat.options.Rd | 12 man/split.hyperframe.Rd | 12 man/split.im.Rd | 10 man/split.ppp.Rd | 10 man/split.ppx.Rd | 10 man/spokes.Rd | 10 man/square.Rd | 10 man/stieltjes.Rd | 10 man/stienen.Rd | 14 man/stratrand.Rd | 10 man/studpermu.test.Rd | 14 man/subfits.Rd | 16 man/subset.hyperframe.Rd | 14 man/subset.ppp.Rd | 14 man/suffstat.Rd | 14 man/summary.anylist.Rd | 10 man/summary.im.Rd | 10 man/summary.kppm.Rd | 10 man/summary.listof.Rd | 10 man/summary.owin.Rd | 10 man/summary.ppm.Rd | 10 man/summary.ppp.Rd | 10 man/summary.psp.Rd | 10 man/summary.quad.Rd | 10 man/summary.solist.Rd | 14 man/summary.splitppp.Rd | 10 man/sumouter.Rd | 10 man/superimpose.Rd | 10 man/superimpose.lpp.Rd | 14 man/symbolmap.Rd | 12 man/tess.Rd | 14 man/texturemap.Rd | 12 man/textureplot.Rd | 14 man/thomas.estK.Rd | 11 man/thomas.estpcf.Rd | 8 man/tile.areas.Rd | 14 man/tilenames.Rd | 10 man/tiles.Rd | 13 man/tiles.empty.Rd |only man/timed.Rd | 10 man/transect.im.Rd | 10 man/transmat.Rd | 14 man/treebranchlabels.Rd | 14 man/treeprune.Rd | 14 man/triangulate.owin.Rd | 21 man/trim.rectangle.Rd | 10 man/triplet.family.Rd | 10 man/tweak.colourmap.Rd | 10 man/union.quad.Rd | 10 man/unique.ppp.Rd | 10 man/unitname.Rd | 10 man/unmark.Rd | 10 man/unnormdensity.Rd | 10 man/update.detpointprocfamily.Rd | 14 man/update.kppm.Rd | 14 man/update.ppm.Rd | 10 man/update.rmhcontrol.Rd | 10 man/update.symbolmap.Rd | 12 man/valid.Rd | 14 man/valid.detpointprocfamily.Rd | 14 man/valid.ppm.Rd | 10 man/varblock.Rd | 10 man/varcount.Rd |only man/vargamma.estK.Rd | 6 man/vargamma.estpcf.Rd | 6 man/vcov.kppm.Rd | 6 man/vcov.mppm.Rd | 16 man/vcov.ppm.Rd | 12 man/vcov.slrm.Rd | 6 man/vertices.Rd | 10 man/volume.Rd | 14 man/whist.Rd | 10 man/will.expand.Rd | 10 man/with.fv.Rd | 10 man/with.hyperframe.Rd | 10 man/with.msr.Rd | 14 man/yardstick.Rd | 14 man/zapsmall.im.Rd | 8 man/zclustermodel.Rd |only src/Perfect.cc | 2 src/PerfectPenttinen.h |only src/closefuns.h | 18 src/constants.h | 7 src/fastinterv.c |only src/getcif.c | 4 src/linSnncross.c |only src/linSnncross.h |only src/linequad.c |only src/linknnd.c |only src/linnncross.h | 4 src/linvdist.c |only src/linvdist.h |only src/linvknndist.c |only src/lixel.c |only src/penttinen.c |only tests/alltests.R | 118 + vignettes/packagesizes.txt | 1 vignettes/updates.Rnw | 3752 ++++----------------------------------- 1159 files changed, 11974 insertions(+), 15844 deletions(-)
Title: Tools for Spatial Data Analysis
Description: Tools for spatial data analysis. Emphasis on kriging. Provides functions for prediction and simulation. Intended to be relatively straightforward, fast, and flexible.
Author: Joshua French <joshua.french@ucdenver.edu>
Maintainer: Joshua French <joshua.french@ucdenver.edu>
Diff between SpatialTools versions 1.0.1 dated 2015-11-30 and 1.0.2 dated 2015-12-23
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 2 ++ R/cov.R | 33 ++++++++++++++++----------------- 4 files changed, 25 insertions(+), 24 deletions(-)
Title: Access for Dryad Web Services
Description: Interface to the Dryad Solr API, their OAI-PMH service, and
fetch datasets.
Author: Scott Chamberlain [aut, cre],
Carl Boettiger [aut],
Karthik Ram [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rdryad versions 0.1.1 dated 2013-01-30 and 0.2.0 dated 2015-12-23
rdryad-0.1.1/rdryad/R/download_dryadmetadata.r |only rdryad-0.1.1/rdryad/R/dryad_getfile.r |only rdryad-0.1.1/rdryad/R/getalldryad_metadata.r |only rdryad-0.1.1/rdryad/R/search_dryad.r |only rdryad-0.1.1/rdryad/R/totimp.r |only rdryad-0.1.1/rdryad/R/totimp_dryad.r |only rdryad-0.1.1/rdryad/man/dr_listidentifiers.Rd |only rdryad-0.1.1/rdryad/man/dr_listmetadataformats.Rd |only rdryad-0.1.1/rdryad/man/dr_listsets.Rd |only rdryad-0.1.1/rdryad/man/dryad_getfile.Rd |only rdryad-0.1.1/rdryad/man/totimp.Rd |only rdryad-0.1.1/rdryad/man/totimp_dryad.Rd |only rdryad-0.2.0/rdryad/DESCRIPTION | 39 ++- rdryad-0.2.0/rdryad/LICENSE |only rdryad-0.2.0/rdryad/MD5 | 69 ++++-- rdryad-0.2.0/rdryad/NAMESPACE | 51 +++-- rdryad-0.2.0/rdryad/NEWS | 26 ++ rdryad-0.2.0/rdryad/R/defunct.R |only rdryad-0.2.0/rdryad/R/download_url.r | 39 +-- rdryad-0.2.0/rdryad/R/dr_get_records.R |only rdryad-0.2.0/rdryad/R/dr_identify.r | 14 - rdryad-0.2.0/rdryad/R/dr_list_records.R |only rdryad-0.2.0/rdryad/R/dr_listidentifiers.r | 54 +---- rdryad-0.2.0/rdryad/R/dr_listmetadataformats.r | 14 - rdryad-0.2.0/rdryad/R/dr_listsets.r | 28 +- rdryad-0.2.0/rdryad/R/dryad_fetch.R |only rdryad-0.2.0/rdryad/R/dryad_solr.r |only rdryad-0.2.0/rdryad/R/rdryad-package.R |only rdryad-0.2.0/rdryad/R/zzz.R |only rdryad-0.2.0/rdryad/README.md | 204 ++++++++++++++++++-- rdryad-0.2.0/rdryad/inst |only rdryad-0.2.0/rdryad/man/d_solr_search.Rd |only rdryad-0.2.0/rdryad/man/download_dryadmetadata.Rd | 30 -- rdryad-0.2.0/rdryad/man/download_url.Rd | 19 - rdryad-0.2.0/rdryad/man/dr_get_records.Rd |only rdryad-0.2.0/rdryad/man/dr_identify.Rd | 11 - rdryad-0.2.0/rdryad/man/dr_list_identifiers.Rd |only rdryad-0.2.0/rdryad/man/dr_list_metadata_formats.Rd |only rdryad-0.2.0/rdryad/man/dr_list_records.Rd |only rdryad-0.2.0/rdryad/man/dr_list_sets.Rd |only rdryad-0.2.0/rdryad/man/dryad_fetch.Rd |only rdryad-0.2.0/rdryad/man/getalldryad_metadata.Rd | 33 --- rdryad-0.2.0/rdryad/man/rdryad-package.Rd |only rdryad-0.2.0/rdryad/man/search_dryad.Rd | 64 ------ rdryad-0.2.0/rdryad/tests |only 45 files changed, 407 insertions(+), 288 deletions(-)
Title: Work with 'GitHub' 'Gists'
Description: Work with 'GitHub' 'gists' from 'R' (e.g., http://en.wikipedia.org/
wiki/GitHub#Gist, https://help.github.com/articles/about-gists/). A 'gist'
is simply one or more files with code/text/images/etc. This package allows
the user to create new 'gists', update 'gists' with new files, rename files,
delete files, get and delete 'gists', star and 'un-star' 'gists', fork 'gists',
open a 'gist' in your default browser, get embed code for a 'gist', list
'gist' 'commits', and get rate limit information when 'authenticated'. Some
requests require authentication and some do not. 'Gists' website: https://
gist.github.com/.
Author: Ramnath Vaidyanathan [aut],
Karthik Ram [aut],
Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between gistr versions 0.3.4 dated 2015-10-09 and 0.3.6 dated 2015-12-23
DESCRIPTION | 29 +++++++++--------- MD5 | 72 ++++++++++++++++++++++----------------------- NAMESPACE | 2 - R/gist.R | 10 ++---- R/gist_create.R | 2 - R/gist_map.R | 2 - R/gistr-package.R | 8 +++++ R/tabl.R | 3 - R/update.R | 4 +- R/utils.R | 1 R/zzz.R | 14 ++++---- build/vignette.rds |binary man/browse.Rd | 2 - man/commits.Rd | 2 - man/create_gists.Rd | 22 ++++++------- man/delete.Rd | 2 - man/embed.Rd | 2 - man/files.Rd | 2 - man/fork.Rd | 2 - man/forks.Rd | 4 +- man/gist.Rd | 10 +++--- man/gist_auth.Rd | 2 - man/gist_create.Rd | 10 +++--- man/gist_create_git.Rd | 38 +++++++++++------------ man/gist_create_obj.Rd | 2 - man/gist_map.Rd | 4 +- man/gist_save.Rd | 14 ++++---- man/gistr-package.Rd | 2 - man/gists.Rd | 2 - man/pipe.Rd | 2 - man/rate_limit.Rd | 2 - man/run.Rd | 2 - man/star.Rd | 4 +- man/tabl.Rd | 19 +++++------ man/update.Rd | 4 +- tests/testthat/test-fork.R | 2 - tests/testthat/test-gist.R | 14 +++++++- 37 files changed, 163 insertions(+), 155 deletions(-)
Title: Functional Time Series Analysis
Description: Functions for visualizing, modeling, forecasting and hypothesis testing of functional time series.
Author: Rob J Hyndman and Han Lin Shang
Maintainer: Han Lin Shang <hanlin.shang@anu.edu.au>
Diff between ftsa versions 4.5 dated 2015-11-12 and 4.6 dated 2015-12-23
ftsa-4.5/ftsa/R/DataPostProc.r |only ftsa-4.5/ftsa/R/L1median2.r |only ftsa-4.5/ftsa/R/MISE.r |only ftsa-4.5/ftsa/R/ParseControlStructure.r |only ftsa-4.5/ftsa/R/ParseDevString.r |only ftsa-4.5/ftsa/R/Qn.r |only ftsa-4.5/ftsa/R/ScaleAdv.r |only ftsa-4.5/ftsa/R/aveISFE.r |only ftsa-4.5/ftsa/R/colQn.r |only ftsa-4.5/ftsa/R/hossjercroux.r |only ftsa-4.5/ftsa/R/hyman.filter.r |only ftsa-4.5/ftsa/R/isfe.fts.r |only ftsa-4.5/ftsa/R/loadSgnU.r |only ftsa-4.5/ftsa/R/matrix.rank.r |only ftsa-4.5/ftsa/R/metri.p.r |only ftsa-4.5/ftsa/R/mrobj.r |only ftsa-4.5/ftsa/R/nicerange.r |only ftsa-4.5/ftsa/R/norm.r |only ftsa-4.5/ftsa/R/norme.r |only ftsa-4.5/ftsa/R/pegelsna.r |only ftsa-4.5/ftsa/R/rapca.r |only ftsa-4.5/ftsa/R/repmat.r |only ftsa-4.5/ftsa/R/rstep.r |only ftsa-4.5/ftsa/R/rw.drift.r |only ftsa-4.5/ftsa/R/spl.coef.conv.r |only ftsa-4.5/ftsa/R/struct.forecast.r |only ftsa-4.6/ftsa/ChangeLog | 5 ftsa-4.6/ftsa/DESCRIPTION | 12 ftsa-4.6/ftsa/MD5 | 78 ftsa-4.6/ftsa/R/DataPostProc.R |only ftsa-4.6/ftsa/R/L1median2.R |only ftsa-4.6/ftsa/R/MISE.R |only ftsa-4.6/ftsa/R/ParseControlStructure.R |only ftsa-4.6/ftsa/R/ParseDevString.R |only ftsa-4.6/ftsa/R/Qn.R |only ftsa-4.6/ftsa/R/ScaleAdv.R |only ftsa-4.6/ftsa/R/T_stationary.R | 99 ftsa-4.6/ftsa/R/aveISFE.R |only ftsa-4.6/ftsa/R/colQn.R |only ftsa-4.6/ftsa/R/hossjercroux.R |only ftsa-4.6/ftsa/R/hyman.filter.R |only ftsa-4.6/ftsa/R/isfe.fts.R |only ftsa-4.6/ftsa/R/loadSgnU.R |only ftsa-4.6/ftsa/R/matrix.rank.R |only ftsa-4.6/ftsa/R/metri.p.R |only ftsa-4.6/ftsa/R/mrobj.R |only ftsa-4.6/ftsa/R/nicerange.R |only ftsa-4.6/ftsa/R/norm.R |only ftsa-4.6/ftsa/R/norme.R |only ftsa-4.6/ftsa/R/pegelsna.R |only ftsa-4.6/ftsa/R/rapca.R |only ftsa-4.6/ftsa/R/repmat.R |only ftsa-4.6/ftsa/R/rstep.R |only ftsa-4.6/ftsa/R/rw.drift.R |only ftsa-4.6/ftsa/R/spl.coef.conv.R |only ftsa-4.6/ftsa/R/struct.forecast.R |only ftsa-4.6/ftsa/build/vignette.rds |binary ftsa-4.6/ftsa/inst/doc/ftsa.R | 6 ftsa-4.6/ftsa/inst/doc/ftsa.Rnw | 26 ftsa-4.6/ftsa/inst/doc/ftsa.pdf |binary ftsa-4.6/ftsa/man/T_stationary.Rd | 22 ftsa-4.6/ftsa/man/farforecast.Rd | 9 ftsa-4.6/ftsa/man/ftsa-package.Rd | 2 ftsa-4.6/ftsa/man/pcscorebootstrapdata.Rd | 10 ftsa-4.6/ftsa/vignettes/ftsa.Rnw | 26 ftsa-4.6/ftsa/vignettes/master.bib |10322 +++++++++++++++--------------- 66 files changed, 5322 insertions(+), 5295 deletions(-)
Title: An R Package for Data Reduction by Battery Reduction
Description: Battery reduction is a method used in data reduction. It uses Gram-Schmidt orthogonal rotations to find out a subset of variables best representing the original set of variables.
Author: Chunqiao Luo [aut, cre],
Ralph D'Agostino [aut] (This package is derived from Battery Reduction
Macro at http://www.lexjansen.com/nesug/nesug92/NESUG92090.pdf)
Maintainer: Chunqiao Luo <chunqiaoluo@gmail.com>
Diff between batteryreduction versions 0.1.0 dated 2015-10-12 and 0.1.1 dated 2015-12-23
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/batteryreduction.R | 2 +- man/batteryreduction.Rd | 2 +- 4 files changed, 8 insertions(+), 8 deletions(-)
More information about batteryreduction at CRAN
Permanent link