Mon, 28 Dec 2015

Package rrepast updated to version 0.3 with previous version 0.2 dated 2015-12-05

Title: Invoke 'Repast Simphony' Simulation Models
Description: An R and Repast integration tool for running individual-based (IbM) simulation models developed using 'Repast Simphony' Agent-Based framework directly from R code. This package integrates 'Repast Simphony' models within R environment, making easier the tasks of running and analyzing model output data for automated parameter calibration and for carrying out uncertainty and sensitivity analysis using the power of R environment.
Author: Antonio Prestes Garcia [aut, cre], Alfonso Rodriguez-Paton [aut, ths]
Maintainer: Antonio Prestes Garcia <antonio.pgarcia@alumnos.upm.es>

Diff between rrepast versions 0.2 dated 2015-12-05 and 0.3 dated 2015-12-28

 DESCRIPTION                    |   10 -
 MD5                            |   13 +-
 NAMESPACE                      |    8 +
 R/RRepast.R                    |  244 ++++++++++++++++++++++++++++++++++++++---
 man/AddFactor.Rd               |only
 man/ApplyFactorRange.Rd        |only
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 man/LatinHypercube.Rd          |only
 man/RunExperiment.Rd           |only
 man/SetSimulationParameters.Rd |only
 11 files changed, 254 insertions(+), 21 deletions(-)

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Package rglwidget updated to version 0.1.1434 with previous version 0.1.1431 dated 2015-12-07

Title: 'rgl' in 'htmlwidgets' Framework
Description: Provides an 'htmlwidgets' framework for the 'rgl' package.
Author: Duncan Murdoch
Maintainer: Duncan Murdoch <murdoch.duncan@gmail.com>

Diff between rglwidget versions 0.1.1431 dated 2015-12-07 and 0.1.1434 dated 2015-12-28

 DESCRIPTION                                   |   14 +++---
 MD5                                           |   28 ++++++------
 NAMESPACE                                     |   11 +++-
 R/playwidget.R                                |   55 +++++++++++++++++++++++
 R/rglwidget.R                                 |   26 +++++++++--
 demo/00Index                                  |    1 
 demo/simpleShinyRgl.R                         |only
 inst/htmlwidgets/lib/rglClass/rglClass.src.js |    3 +
 man/ageControl.Rd                             |   26 ++++-------
 man/clipplaneControl.Rd                       |   12 +----
 man/import.Rd                                 |only
 man/playwidget.Rd                             |   60 +++++++++++++++++++++-----
 man/rglwidget.Rd                              |   12 ++++-
 man/vertexControl.Rd                          |   19 +++-----
 vignettes/internals.Rmd                       |    4 +
 vignettes/test.Rmd                            |   28 ++++++++++++
 16 files changed, 224 insertions(+), 75 deletions(-)

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Package rgl updated to version 0.95.1435 with previous version 0.95.1429 dated 2015-12-07

Title: 3D Visualization Using OpenGL
Description: Provides medium to high level functions for 3D interactive graphics, including functions modelled on base graphics (plot3d(), etc.) as well as functions for constructing representations of geometric objects (cube3d(), etc.). Output may be on screen using OpenGL, or to various standard 3D file formats including WebGL, PLY, OBJ, STL as well as 2D image formats, including PNG, Postscript, SVG, PGF.
Author: Daniel Adler <dadler@uni-goettingen.de>, Duncan Murdoch <murdoch@stats.uwo.ca>, and others (see README)
Maintainer: Duncan Murdoch <murdoch@stats.uwo.ca>

Diff between rgl versions 0.95.1429 dated 2015-12-07 and 0.95.1435 dated 2015-12-28

 DESCRIPTION           |   10 -
 MD5                   |   14 -
 inst/doc/WebGL.html   |  425 ++++++++++++++++++++++++++++++++++----------------
 inst/doc/rgl.html     |  279 ++++++++++++++++++++++++--------
 man/ageSetter.Rd      |    4 
 man/propertySetter.Rd |   22 +-
 man/webGLcontrols.Rd  |   10 -
 man/writeWebGL.Rd     |   18 +-
 8 files changed, 540 insertions(+), 242 deletions(-)

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Package nhanesA updated to version 0.6.2 with previous version 0.6.1 dated 2015-10-08

Title: NHANES Data Retrieval
Description: Utility to retrieve data from the National Health and Nutrition Examination Survey (NHANES).
Author: Christopher Endres
Maintainer: Christopher Endres <cjendres1@gmail.com>

Diff between nhanesA versions 0.6.1 dated 2015-10-08 and 0.6.2 dated 2015-12-28

 nhanesA-0.6.1/nhanesA/INDEX                             |only
 nhanesA-0.6.2/nhanesA/DESCRIPTION                       |   14 -
 nhanesA-0.6.2/nhanesA/MD5                               |   32 +--
 nhanesA-0.6.2/nhanesA/NAMESPACE                         |    5 
 nhanesA-0.6.2/nhanesA/R/nhanes.R                        |  146 +++++++++++-----
 nhanesA-0.6.2/nhanesA/README.md                         |   11 -
 nhanesA-0.6.2/nhanesA/build/vignette.rds                |binary
 nhanesA-0.6.2/nhanesA/inst/doc/Introducing_nhanesA.R    |   12 +
 nhanesA-0.6.2/nhanesA/inst/doc/Introducing_nhanesA.Rmd  |   20 ++
 nhanesA-0.6.2/nhanesA/inst/doc/Introducing_nhanesA.html |  118 ++++++++----
 nhanesA-0.6.2/nhanesA/man/browseNHANES.Rd               |    8 
 nhanesA-0.6.2/nhanesA/man/nhanes.Rd                     |    6 
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 nhanesA-0.6.2/nhanesA/man/nhanesTranslate.Rd            |   14 -
 nhanesA-0.6.2/nhanesA/vignettes/Introducing_nhanesA.Rmd |   20 ++
 18 files changed, 285 insertions(+), 129 deletions(-)

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Package multilevelPSA updated to version 1.2.4 with previous version 1.2.3 dated 2015-11-05

Title: Multilevel Propensity Score Analysis
Description: Functions to estimate and visualize propensity score analysis for multilevel, or clustered, data.
Author: Jason Bryer <jason@bryer.org>
Maintainer: Jason Bryer <jason@bryer.org>

Diff between multilevelPSA versions 1.2.3 dated 2015-11-05 and 1.2.4 dated 2015-12-28

 multilevelPSA-1.2.3/multilevelPSA/R/geom_rug_alt.R          |only
 multilevelPSA-1.2.3/multilevelPSA/README.md                 |only
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 multilevelPSA-1.2.4/multilevelPSA/DESCRIPTION               |   14 +++----
 multilevelPSA-1.2.4/multilevelPSA/MD5                       |   23 +++++-------
 multilevelPSA-1.2.4/multilevelPSA/NAMESPACE                 |   19 ++++++++-
 multilevelPSA-1.2.4/multilevelPSA/NEWS                      |    5 ++
 multilevelPSA-1.2.4/multilevelPSA/R/multilevelPSA-package.R |    7 ++-
 multilevelPSA-1.2.4/multilevelPSA/R/plot.difftable.R        |    6 +--
 multilevelPSA-1.2.4/multilevelPSA/R/plot.missing.R          |    4 +-
 multilevelPSA-1.2.4/multilevelPSA/R/plot.mlpsa.circ.R       |   22 ++++++-----
 multilevelPSA-1.2.4/multilevelPSA/R/plot.mlpsa.difference.R |    7 ++-
 multilevelPSA-1.2.4/multilevelPSA/man/missing.plot.Rd       |    6 +--
 multilevelPSA-1.2.4/multilevelPSA/man/mlpsa.circ.plot.Rd    |   13 +++---
 14 files changed, 73 insertions(+), 53 deletions(-)

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Package GMDH updated to version 1.2 with previous version 1.1 dated 2015-07-20

Title: Short Term Forecasting via GMDH-Type Neural Network Algorithms
Description: Group method of data handling (GMDH) - type neural network algorithm is the heuristic self-organization method for modelling the complex systems. In this package, GMDH-type neural network algorithms are applied to make short term forecasting for a univariate time series.
Author: Osman Dag, Ceylan Yozgatligil
Maintainer: Osman Dag <osman.dag@hacettepe.edu.tr>

Diff between GMDH versions 1.1 dated 2015-07-20 and 1.2 dated 2015-12-28

 DESCRIPTION  |   13 ++++++-------
 MD5          |    6 +++---
 man/GMDH.Rd  |    8 ++++----
 man/fcast.Rd |   10 +++++-----
 4 files changed, 18 insertions(+), 19 deletions(-)

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Package arfima updated to version 1.3-3 with previous version 1.2-7 dated 2014-11-21

Title: Fractional ARIMA (and Other Long Memory) Time Series Modeling
Description: Simulates, fits, and predicts long-memory and anti-persistent time series, possibly mixed with ARMA, regression, transfer-function components. Exact methods (MLE, forecasting, simulation) are used.
Author: Justin Q. Veenstra [aut, cre], A.I. McLeod [aut]
Maintainer: Justin Q. Veenstra <justin.veenstra@gmail.com>

Diff between arfima versions 1.2-7 dated 2014-11-21 and 1.3-3 dated 2015-12-28

 DESCRIPTION           |   26 
 MD5                   |   50 -
 NAMESPACE             |    2 
 R/ARToPacf.R          |   54 -
 R/Boot.ARFIMA.R       |  257 +++---
 R/Boot.R              |    8 
 R/InvertibleQ.R       |  260 +++---
 R/arfima.R            | 2090 ++++++++++++++++++++++++++++----------------------
 R/arfima0.R           |   80 +
 R/arfimaFit.R         | 1009 +++++++++++++++---------
 R/getssq.R            |   67 -
 R/iARMA.R             | 1222 ++++++++++++++---------------
 R/integ.R             |   27 
 R/lARFIMA.R           |  111 +-
 R/lARFIMAwTF.R        |  150 +--
 R/mult.R              |   88 +-
 R/plot.predARFIMA.R   |  213 ++---
 R/predict.ARFIMA.R    |  615 +++++++-------
 R/sims.R              |  258 +++---
 R/tacf.R              | 1061 ++++++++++++-------------
 R/utilityfcns.R       | 1112 +++++++++++++-------------
 R/wts.R               |  176 ++--
 man/arfima-package.Rd |  312 +++----
 man/arfima.Rd         |  373 ++++----
 src/Makevars          |    2 
 src/tfcalc.c          |    2 
 26 files changed, 5221 insertions(+), 4404 deletions(-)

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Package vdmR updated to version 0.2.1 with previous version 0.2.0 dated 2015-11-18

Title: Visual Data Mining Tools for R
Description: This provides web-based visual data-mining tools by adding interactive functions to 'ggplot2' graphics. Brushing and linking between the multiple plots is one of the main feature of this package. Currently scatter plots, histograms, parallel coordinate plots and choropleth maps are supported.
Author: Tomokazu Fujino
Maintainer: Tomokazu Fujino <fujino@fwu.ac.jp>

Diff between vdmR versions 0.2.0 dated 2015-11-18 and 0.2.1 dated 2015-12-28

 DESCRIPTION        |   20 ++++++++---------
 MD5                |   13 ++++++-----
 NAMESPACE          |    2 +
 R/vcmap.R          |   57 +++++++++++++++++++++++++++++++--------------------
 R/vhist.R          |   59 +++++++++++++++++++++++++++++------------------------
 R/vscat.R          |   27 +++++++++++++++---------
 build/vignette.rds |binary
 tests/testthat     |only
 8 files changed, 104 insertions(+), 74 deletions(-)

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Package tweet2r updated to version 0.3 with previous version 0.2 dated 2015-11-01

Title: Twitter Collector and Export to 'postGIS'
Description: This is an improved implementation of the package 'StreamR' to capture tweets and store it into a 'postGIS' data base. The package simplifies the configuration task to capture tweets and facilitates its store into a 'PostGIS' database.
Author: Pau Aragó
Maintainer: Pau Aragó <parago@uji.es>

Diff between tweet2r versions 0.2 dated 2015-11-01 and 0.3 dated 2015-12-28

 ChangeLog              |only
 DESCRIPTION            |   10 ++++++----
 MD5                    |   23 ++++++++++++++++-------
 NAMESPACE              |    9 +++++++++
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 man/tweet2r-package.Rd |    5 ++---
 man/tweet2r.Rd         |   12 +++++-------
 man/valjson.Rd         |only
 17 files changed, 52 insertions(+), 29 deletions(-)

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New package markmyassignment with initial version 0.3.0
Package: markmyassignment
Type: Package
Title: Automatic Marking of R Assignments
Version: 0.3.0
Date: 2015-12-28
Author: Mans Magnusson, Oscar Pettersson
Maintainer: Mans Magnusson <mons.magnusson@gmail.com>
Description: Automatic marking of R assignments for students and teachers based on testthat test suites.
License: BSD_2_clause + file LICENSE
Depends: R (>= 3.1.0), methods, yaml, testthat (>= 0.11.0), httr
Imports: codetools
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2015-12-28 11:30:00 UTC; manma97
Repository: CRAN
Date/Publication: 2015-12-28 14:07:13

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Package BH updated to version 1.60.0-1 with previous version 1.58.0-1 dated 2015-05-21

Title: Boost C++ Header Files
Description: Boost provides free peer-reviewed portable C++ source libraries. A large part of Boost is provided as C++ template code which is resolved entirely at compile-time without linking. This package aims to provide the most useful subset of Boost libraries for template use among CRAN package. By placing these libraries in this package, we offer a more efficient distribution system for CRAN as replication of this code in the sources of other packages is avoided. As of release 1.60, the following Boost libraries are included: algorithm any bind circular_buffer concept config container date_time detail dynamic_bitset exception filesystem foreach functional fusion geometry graph heap integer interprocess intrusive io iostreams iterator math move mpl multiprcecision numeric pending phoenix preprocessor random range smart_ptr spirit tuple type_trains typeof unordered utility uuid.
Author: Dirk Eddelbuettel, John W. Emerson and Michael J. Kane
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between BH versions 1.58.0-1 dated 2015-05-21 and 1.60.0-1 dated 2015-12-28

 ChangeLog                                                                                    |   13 
 DESCRIPTION                                                                                  |   18 
 MD5                                                                                          | 4031 ++++++----
 README.md                                                                                    |   14 
 inst/NEWS.Rd                                                                                 |   40 
 inst/include/boost/align/align.hpp                                                           |   10 
 inst/include/boost/align/detail/address.hpp                                                  |   26 
 inst/include/boost/align/detail/align.hpp                                                    |   46 
 inst/include/boost/align/detail/align_cxx11.hpp                                              |   20 
 inst/include/boost/align/detail/is_alignment.hpp                                             |   30 
 inst/include/boost/aligned_storage.hpp                                                       |  127 
 inst/include/boost/archive/archive_exception.hpp                                             |   25 
 inst/include/boost/archive/basic_archive.hpp                                                 |    4 
 inst/include/boost/archive/basic_binary_iarchive.hpp                                         |   58 
 inst/include/boost/archive/basic_binary_iprimitive.hpp                                       |   17 
 inst/include/boost/archive/basic_binary_oarchive.hpp                                         |   33 
 inst/include/boost/archive/basic_binary_oprimitive.hpp                                       |   24 
 inst/include/boost/archive/basic_text_iarchive.hpp                                           |   15 
 inst/include/boost/archive/basic_text_iprimitive.hpp                                         |    8 
 inst/include/boost/archive/basic_text_oarchive.hpp                                           |   19 
 inst/include/boost/archive/basic_text_oprimitive.hpp                                         |    8 
 inst/include/boost/archive/basic_xml_archive.hpp                                             |   16 
 inst/include/boost/archive/basic_xml_iarchive.hpp                                            |   43 
 inst/include/boost/archive/basic_xml_oarchive.hpp                                            |   65 
 inst/include/boost/archive/binary_iarchive.hpp                                               |    2 
 inst/include/boost/archive/binary_iarchive_impl.hpp                                          |    8 
 inst/include/boost/archive/binary_oarchive.hpp                                               |    2 
 inst/include/boost/archive/binary_oarchive_impl.hpp                                          |    8 
 inst/include/boost/archive/codecvt_null.hpp                                                  |    4 
 inst/include/boost/archive/detail/abi_prefix.hpp                                             |    4 
 inst/include/boost/archive/detail/abi_suffix.hpp                                             |    4 
 inst/include/boost/archive/detail/archive_serializer_map.hpp                                 |    9 
 inst/include/boost/archive/detail/basic_iarchive.hpp                                         |   40 
 inst/include/boost/archive/detail/basic_iserializer.hpp                                      |   14 
 inst/include/boost/archive/detail/basic_oarchive.hpp                                         |   28 
 inst/include/boost/archive/detail/basic_oserializer.hpp                                      |   14 
 inst/include/boost/archive/detail/basic_pointer_iserializer.hpp                              |   14 
 inst/include/boost/archive/detail/basic_pointer_oserializer.hpp                              |   14 
 inst/include/boost/archive/detail/basic_serializer_map.hpp                                   |    8 
 inst/include/boost/archive/detail/common_iarchive.hpp                                        |    2 
 inst/include/boost/archive/detail/common_oarchive.hpp                                        |    2 
 inst/include/boost/archive/detail/decl.hpp                                                   |   68 
 inst/include/boost/archive/detail/helper_collection.hpp                                      |    5 
 inst/include/boost/archive/detail/interface_iarchive.hpp                                     |   12 
 inst/include/boost/archive/detail/interface_oarchive.hpp                                     |   21 
 inst/include/boost/archive/detail/iserializer.hpp                                            |   76 
 inst/include/boost/archive/impl/archive_serializer_map.ipp                                   |    6 
 inst/include/boost/archive/impl/basic_binary_iarchive.ipp                                    |   10 
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 inst/include/boost/archive/impl/basic_binary_oarchive.ipp                                    |    6 
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 inst/include/boost/archive/impl/basic_text_oarchive.ipp                                      |    4 
 inst/include/boost/archive/impl/basic_text_oprimitive.ipp                                    |   11 
 inst/include/boost/archive/impl/basic_xml_grammar.hpp                                        |   14 
 inst/include/boost/archive/impl/basic_xml_iarchive.ipp                                       |   24 
 inst/include/boost/archive/impl/basic_xml_oarchive.ipp                                       |   63 
 inst/include/boost/archive/impl/text_iarchive_impl.ipp                                       |   18 
 inst/include/boost/archive/impl/text_oarchive_impl.ipp                                       |   12 
 inst/include/boost/archive/impl/text_wiarchive_impl.ipp                                      |   10 
 inst/include/boost/archive/impl/text_woarchive_impl.ipp                                      |    8 
 inst/include/boost/archive/impl/xml_iarchive_impl.ipp                                        |   70 
 inst/include/boost/archive/impl/xml_oarchive_impl.ipp                                        |   22 
 inst/include/boost/archive/impl/xml_wiarchive_impl.ipp                                       |   27 
 inst/include/boost/archive/impl/xml_woarchive_impl.ipp                                       |   28 
 inst/include/boost/archive/iterators/base64_from_binary.hpp                                  |    6 
 inst/include/boost/archive/iterators/binary_from_base64.hpp                                  |    5 
 inst/include/boost/archive/iterators/insert_linebreaks.hpp                                   |    6 
 inst/include/boost/archive/iterators/mb_from_wchar.hpp                                       |   19 
 inst/include/boost/archive/iterators/remove_whitespace.hpp                                   |    6 
 inst/include/boost/archive/iterators/transform_width.hpp                                     |    8 
 inst/include/boost/archive/iterators/wchar_from_mb.hpp                                       |   37 
 inst/include/boost/archive/iterators/xml_escape.hpp                                          |    5 
 inst/include/boost/archive/iterators/xml_unescape.hpp                                        |    5 
 inst/include/boost/archive/polymorphic_iarchive.hpp                                          |   18 
 inst/include/boost/archive/polymorphic_oarchive.hpp                                          |   17 
 inst/include/boost/archive/text_iarchive.hpp                                                 |   29 
 inst/include/boost/archive/text_oarchive.hpp                                                 |   18 
 inst/include/boost/archive/text_wiarchive.hpp                                                |   20 
 inst/include/boost/archive/text_woarchive.hpp                                                |   12 
 inst/include/boost/archive/xml_archive_exception.hpp                                         |    7 
 inst/include/boost/archive/xml_iarchive.hpp                                                  |   26 
 inst/include/boost/archive/xml_oarchive.hpp                                                  |   14 
 inst/include/boost/archive/xml_wiarchive.hpp                                                 |   26 
 inst/include/boost/archive/xml_woarchive.hpp                                                 |   16 
 inst/include/boost/asio                                                                      |only
 inst/include/boost/asio.hpp                                                                  |only
 inst/include/boost/assert.hpp                                                                |    9 
 inst/include/boost/atomic/detail/atomic_flag.hpp                                             |    6 
 inst/include/boost/atomic/detail/atomic_template.hpp                                         |  128 
 inst/include/boost/atomic/detail/bitwise_cast.hpp                                            |only
 inst/include/boost/atomic/detail/caps_gcc_ppc.hpp                                            |    2 
 inst/include/boost/atomic/detail/config.hpp                                                  |   36 
 inst/include/boost/atomic/detail/int_sizes.hpp                                               |    4 
 inst/include/boost/atomic/detail/operations_fwd.hpp                                          |    3 
 inst/include/boost/atomic/detail/ops_cas_based.hpp                                           |   40 
 inst/include/boost/atomic/detail/ops_emulated.hpp                                            |   16 
 inst/include/boost/atomic/detail/ops_extending_cas_based.hpp                                 |    9 
 inst/include/boost/atomic/detail/ops_gcc_alpha.hpp                                           |    2 
 inst/include/boost/atomic/detail/ops_gcc_arm.hpp                                             |    2 
 inst/include/boost/atomic/detail/ops_gcc_atomic.hpp                                          |   15 
 inst/include/boost/atomic/detail/ops_gcc_ppc.hpp                                             |  379 
 inst/include/boost/atomic/detail/ops_gcc_sparc.hpp                                           |   27 
 inst/include/boost/atomic/detail/ops_gcc_sync.hpp                                            |   33 
 inst/include/boost/atomic/detail/ops_gcc_x86.hpp                                             |    4 
 inst/include/boost/atomic/detail/ops_gcc_x86_dcas.hpp                                        |  306 
 inst/include/boost/atomic/detail/ops_linux_arm.hpp                                           |    7 
 inst/include/boost/atomic/detail/ops_msvc_arm.hpp                                            |    4 
 inst/include/boost/atomic/detail/ops_msvc_x86.hpp                                            |   57 
 inst/include/boost/atomic/detail/ops_windows.hpp                                             |    1 
 inst/include/boost/atomic/detail/platform.hpp                                                |    8 
 inst/include/boost/atomic/detail/storage_type.hpp                                            |  138 
 inst/include/boost/bind.hpp                                                                  |   19 
 inst/include/boost/bind/arg.hpp                                                              |    6 
 inst/include/boost/bind/bind.hpp                                                             |  485 -
 inst/include/boost/bind/bind_mf_cc.hpp                                                       |   54 
 inst/include/boost/bind/placeholders.hpp                                                     |   65 
 inst/include/boost/chrono/detail/inlined/mac/chrono.hpp                                      |   54 
 inst/include/boost/chrono/detail/inlined/mac/process_cpu_clocks.hpp                          |    2 
 inst/include/boost/chrono/detail/inlined/posix/process_cpu_clocks.hpp                        |    2 
 inst/include/boost/chrono/duration.hpp                                                       |    3 
 inst/include/boost/chrono/io/time_point_units.hpp                                            |   15 
 inst/include/boost/concept/detail/general.hpp                                                |   11 
 inst/include/boost/concept_check.hpp                                                         |   17 
 inst/include/boost/config/compiler/clang.hpp                                                 |   22 
 inst/include/boost/config/compiler/gcc.hpp                                                   |   20 
 inst/include/boost/config/compiler/intel.hpp                                                 |   79 
 inst/include/boost/config/compiler/sunpro_cc.hpp                                             |   10 
 inst/include/boost/config/compiler/visualc.hpp                                               |   50 
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 inst/include/boost/config/platform/cloudabi.hpp                                              |only
 inst/include/boost/config/platform/haiku.hpp                                                 |    2 
 inst/include/boost/config/platform/macos.hpp                                                 |    2 
 inst/include/boost/config/platform/win32.hpp                                                 |    8 
 inst/include/boost/config/select_compiler_config.hpp                                         |   10 
 inst/include/boost/config/select_platform_config.hpp                                         |    4 
 inst/include/boost/config/stdlib/dinkumware.hpp                                              |   28 
 inst/include/boost/config/stdlib/libcomo.hpp                                                 |   12 
 inst/include/boost/config/stdlib/libcpp.hpp                                                  |   10 
 inst/include/boost/config/stdlib/libstdcpp3.hpp                                              |   29 
 inst/include/boost/config/stdlib/modena.hpp                                                  |   10 
 inst/include/boost/config/stdlib/msl.hpp                                                     |   19 
 inst/include/boost/config/stdlib/roguewave.hpp                                               |    9 
 inst/include/boost/config/stdlib/sgi.hpp                                                     |   13 
 inst/include/boost/config/stdlib/stlport.hpp                                                 |   18 
 inst/include/boost/config/stdlib/vacpp.hpp                                                   |   13 
 inst/include/boost/config/suffix.hpp                                                         |   20 
 inst/include/boost/container/adaptive_pool.hpp                                               |   40 
 inst/include/boost/container/allocator.hpp                                                   |   43 
 inst/include/boost/container/allocator_traits.hpp                                            |   75 
 inst/include/boost/container/container_fwd.hpp                                               |   40 
 inst/include/boost/container/deque.hpp                                                       |  119 
 inst/include/boost/container/detail/adaptive_node_pool.hpp                                   |    1 
 inst/include/boost/container/detail/alloc_lib.h                                              |  122 
 inst/include/boost/container/detail/auto_link.hpp                                            |   11 
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 inst/include/boost/container/detail/config_begin.hpp                                         |    1 
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 inst/include/boost/container/detail/node_alloc_holder.hpp                                    |  108 
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 inst/include/boost/container/detail/pool_common_alloc.hpp                                    |   12 
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 inst/include/boost/container/detail/variadic_templates_tools.hpp                             |    2 
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 inst/include/boost/container/flat_map.hpp                                                    |   21 
 inst/include/boost/container/flat_set.hpp                                                    |    6 
 inst/include/boost/container/list.hpp                                                        |  115 
 inst/include/boost/container/map.hpp                                                         |    6 
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 inst/include/boost/container/scoped_allocator_fwd.hpp                                        |   31 
 inst/include/boost/container/set.hpp                                                         |    9 
 inst/include/boost/container/slist.hpp                                                       |   53 
 inst/include/boost/container/small_vector.hpp                                                |   29 
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 inst/include/boost/core/demangle.hpp                                                         |   11 
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 inst/include/boost/date_time/int_adapter.hpp                                                 |    4 
 inst/include/boost/date_time/posix_time/posix_time_duration.hpp                              |    6 
 inst/include/boost/date_time/time_system_counted.hpp                                         |    2 
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 inst/include/boost/detail/winapi/GetCurrentProcess.hpp                                       |   15 
 inst/include/boost/detail/winapi/GetCurrentThread.hpp                                        |   22 
 inst/include/boost/detail/winapi/GetLastError.hpp                                            |   14 
 inst/include/boost/detail/winapi/GetProcessTimes.hpp                                         |   51 
 inst/include/boost/detail/winapi/GetThreadTimes.hpp                                          |   42 
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 inst/include/boost/function_types/is_member_pointer.hpp                                      |    2 
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 inst/include/boost/function_types/result_type.hpp                                            |    2 
 inst/include/boost/functional/hash/hash.hpp                                                  |    2 
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 inst/include/boost/fusion/container/vector/vector50.hpp                                      |   81 
 inst/include/boost/fusion/container/vector/vector_fwd.hpp                                    |   73 
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 inst/include/boost/geometry/algorithms/detail/relate/topology_check.hpp                      |   36 
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 inst/include/boost/geometry/algorithms/detail/turns/print_turns.hpp                          |    4 
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 inst/include/boost/geometry/algorithms/validity_failure_type.hpp                             |    5 
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 inst/include/boost/geometry/geometries/multi_polygon.hpp                                     |   11 
 inst/include/boost/geometry/geometries/point.hpp                                             |   62 
 inst/include/boost/geometry/geometries/point_xy.hpp                                          |   10 
 inst/include/boost/geometry/geometries/pointing_segment.hpp                                  |   13 
 inst/include/boost/geometry/geometries/polygon.hpp                                           |   10 
 inst/include/boost/geometry/geometries/ring.hpp                                              |    5 
 inst/include/boost/geometry/geometries/segment.hpp                                           |   21 
 inst/include/boost/geometry/geometry.hpp                                                     |    7 
 inst/include/boost/geometry/index/detail/assert.hpp                                          |   10 
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 inst/include/boost/geometry/index/detail/rtree/query_iterators.hpp                           |   27 
 inst/include/boost/geometry/index/detail/rtree/rstar/insert.hpp                              |   20 
 inst/include/boost/geometry/index/detail/rtree/utilities/are_boxes_ok.hpp                    |   20 
 inst/include/boost/geometry/index/detail/rtree/visitors/children_box.hpp                     |    4 
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 inst/include/boost/geometry/index/detail/rtree/visitors/remove.hpp                           |   15 
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 inst/include/boost/geometry/index/indexable.hpp                                              |   27 
 inst/include/boost/geometry/index/rtree.hpp                                                  |  368 
 inst/include/boost/geometry/io/svg/svg_mapper.hpp                                            |   21 
 inst/include/boost/geometry/io/wkt/read.hpp                                                  |  146 
 inst/include/boost/geometry/io/wkt/write.hpp                                                 |   19 
 inst/include/boost/geometry/iterators/concatenate_iterator.hpp                               |    1 
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 inst/include/boost/geometry/iterators/flatten_iterator.hpp                                   |   19 
 inst/include/boost/geometry/iterators/point_iterator.hpp                                     |    1 
 inst/include/boost/geometry/multi/multi.hpp                                                  |   73 
 inst/include/boost/geometry/policies/is_valid/failing_reason_policy.hpp                      |   14 
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 inst/include/boost/geometry/policies/robustness/get_rescale_policy.hpp                       |   56 
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 inst/include/boost/geometry/strategies/agnostic/hull_graham_andrew.hpp                       |    3 
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 inst/include/boost/geometry/strategies/buffer.hpp                                            |   14 
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 inst/include/boost/get_pointer.hpp                                                           |   28 
 inst/include/boost/heap/binomial_heap.hpp                                                    |    5 
 inst/include/boost/heap/detail/tree_iterator.hpp                                             |   18 
 inst/include/boost/heap/fibonacci_heap.hpp                                                   |   14 
 inst/include/boost/heap/pairing_heap.hpp                                                     |    2 
 inst/include/boost/interprocess/containers/pair.hpp                                          |    1 
 inst/include/boost/interprocess/detail/config_begin.hpp                                      |    5 
 inst/include/boost/interprocess/detail/config_end.hpp                                        |    3 
 inst/include/boost/interprocess/detail/os_thread_functions.hpp                               |   23 
 inst/include/boost/interprocess/detail/posix_time_types_wrk.hpp                              |    5 
 inst/include/boost/interprocess/detail/std_fwd.hpp                                           |   38 
 inst/include/boost/interprocess/detail/utilities.hpp                                         |   26 
 inst/include/boost/interprocess/detail/win32_api.hpp                                         |   45 
 inst/include/boost/interprocess/detail/workaround.hpp                                        |    3 
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 inst/include/boost/interprocess/interprocess_fwd.hpp                                         |   13 
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 inst/include/boost/intrusive/avl_set.hpp                                                     |  398 
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 inst/include/boost/intrusive/bstree_algorithms.hpp                                           |    4 
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 inst/include/boost/intrusive/detail/is_stateful_value_traits.hpp                             |    2 
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 inst/include/boost/intrusive/detail/key_nodeptr_comp.hpp                                     |   28 
 inst/include/boost/intrusive/detail/list_iterator.hpp                                        |    2 
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 inst/include/boost/intrusive/detail/mpl.hpp                                                  |  320 
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 inst/include/boost/intrusive/detail/parent_from_member.hpp                                   |    4 
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 inst/include/boost/intrusive/detail/slist_iterator.hpp                                       |    2 
 inst/include/boost/intrusive/detail/std_fwd.hpp                                              |   28 
 inst/include/boost/intrusive/detail/transform_iterator.hpp                                   |   13 
 inst/include/boost/intrusive/detail/tree_iterator.hpp                                        |   27 
 inst/include/boost/intrusive/detail/tree_value_compare.hpp                                   |only
 inst/include/boost/intrusive/hashtable.hpp                                                   | 2352 +++--
 inst/include/boost/intrusive/intrusive_fwd.hpp                                               |   32 
 inst/include/boost/intrusive/list.hpp                                                        |  167 
 inst/include/boost/intrusive/options.hpp                                                     |   11 
 inst/include/boost/intrusive/pointer_plus_bits.hpp                                           |   14 
 inst/include/boost/intrusive/pointer_traits.hpp                                              |   14 
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 inst/include/boost/intrusive/rbtree_algorithms.hpp                                           |    8 
 inst/include/boost/intrusive/set.hpp                                                         |  398 
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 inst/include/boost/intrusive/sgtree.hpp                                                      |  304 
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 inst/include/boost/intrusive/splay_set.hpp                                                   |  424 -
 inst/include/boost/intrusive/splaytree.hpp                                                   |  255 
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 inst/include/boost/intrusive/unordered_set.hpp                                               | 1933 ----
 inst/include/boost/iterator/is_lvalue_iterator.hpp                                           |   26 
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 inst/include/boost/lexical_cast/detail/lcast_unsigned_converters.hpp                         |    1 
 inst/include/boost/lexical_cast/try_lexical_convert.hpp                                      |   66 
 inst/include/boost/locale                                                                    |only
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 inst/include/boost/math/concepts/std_real_concept.hpp                                        |    2 
 inst/include/boost/math/constants/constants.hpp                                              |   14 
 inst/include/boost/math/cstdfloat/cstdfloat_iostream.hpp                                     |    5 
 inst/include/boost/math/cstdfloat/cstdfloat_limits.hpp                                       |    2 
 inst/include/boost/math/distributions/bernoulli.hpp                                          |    2 
 inst/include/boost/math/distributions/binomial.hpp                                           |    2 
 inst/include/boost/math/distributions/detail/hypergeometric_pdf.hpp                          |    2 
 inst/include/boost/math/distributions/detail/hypergeometric_quantile.hpp                     |   46 
 inst/include/boost/math/distributions/exponential.hpp                                        |    4 
 inst/include/boost/math/distributions/extreme_value.hpp                                      |    4 
 inst/include/boost/math/distributions/fisher_f.hpp                                           |    4 
 inst/include/boost/math/distributions/geometric.hpp                                          |    2 
 inst/include/boost/math/distributions/hypergeometric.hpp                                     |   44 
 inst/include/boost/math/distributions/inverse_gaussian.hpp                                   |   15 
 inst/include/boost/math/distributions/negative_binomial.hpp                                  |    2 
 inst/include/boost/math/distributions/non_central_beta.hpp                                   |    6 
 inst/include/boost/math/distributions/non_central_chi_squared.hpp                            |   58 
 inst/include/boost/math/distributions/non_central_t.hpp                                      |    4 
 inst/include/boost/math/distributions/rayleigh.hpp                                           |    2 
 inst/include/boost/math/distributions/skew_normal.hpp                                        |   18 
 inst/include/boost/math/distributions/triangular.hpp                                         |   12 
 inst/include/boost/math/distributions/uniform.hpp                                            |   21 
 inst/include/boost/math/policies/error_handling.hpp                                          |  124 
 inst/include/boost/math/policies/policy.hpp                                                  |  108 
 inst/include/boost/math/special_functions.hpp                                                |    2 
 inst/include/boost/math/special_functions/bernoulli.hpp                                      |    2 
 inst/include/boost/math/special_functions/bessel.hpp                                         |   34 
 inst/include/boost/math/special_functions/bessel_prime.hpp                                   |    8 
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 inst/include/boost/math/special_functions/detail/bessel_derivatives_linear.hpp               |   16 
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 inst/include/boost/math/special_functions/detail/bessel_jn.hpp                               |    7 
 inst/include/boost/math/special_functions/detail/bessel_jy_asym.hpp                          |   18 
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 inst/include/boost/math/special_functions/detail/bessel_yn.hpp                               |   34 
 inst/include/boost/math/special_functions/detail/lanczos_sse2.hpp                            |    2 
 inst/include/boost/math/special_functions/detail/polygamma.hpp                               |    8 
 inst/include/boost/math/special_functions/detail/t_distribution_inv.hpp                      |   40 
 inst/include/boost/math/special_functions/ellint_2.hpp                                       |   13 
 inst/include/boost/math/special_functions/ellint_d.hpp                                       |   10 
 inst/include/boost/math/special_functions/fpclassify.hpp                                     |   22 
 inst/include/boost/math/special_functions/gamma.hpp                                          |   20 
 inst/include/boost/math/special_functions/math_fwd.hpp                                       |   25 
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 inst/include/boost/math/special_functions/owens_t.hpp                                        |   84 
 inst/include/boost/math/special_functions/powm1.hpp                                          |   31 
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 inst/include/boost/math/tools/big_constant.hpp                                               |    8 
 inst/include/boost/math/tools/config.hpp                                                     |   77 
 inst/include/boost/math/tools/detail/polynomial_horner1_10.hpp                               |   22 
 inst/include/boost/math/tools/detail/polynomial_horner1_11.hpp                               |   24 
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 inst/include/boost/math/tools/detail/polynomial_horner2_10.hpp                               |   22 
 inst/include/boost/math/tools/detail/polynomial_horner2_11.hpp                               |   24 
 inst/include/boost/math/tools/detail/polynomial_horner2_12.hpp                               |   26 
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 inst/include/boost/math/tools/detail/polynomial_horner2_14.hpp                               |   30 
 inst/include/boost/math/tools/detail/polynomial_horner2_15.hpp                               |   32 
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 inst/include/boost/math/tools/detail/polynomial_horner2_3.hpp                                |   10 
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 inst/include/boost/math/tools/detail/polynomial_horner2_5.hpp                                |   12 
 inst/include/boost/math/tools/detail/polynomial_horner2_6.hpp                                |   14 
 inst/include/boost/math/tools/detail/polynomial_horner2_7.hpp                                |   16 
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 inst/include/boost/math/tools/detail/polynomial_horner3_14.hpp                               |   30 
 inst/include/boost/math/tools/detail/polynomial_horner3_15.hpp                               |   32 
 inst/include/boost/math/tools/detail/polynomial_horner3_16.hpp                               |   34 
 inst/include/boost/math/tools/detail/polynomial_horner3_17.hpp                               |   36 
 inst/include/boost/math/tools/detail/polynomial_horner3_18.hpp                               |   38 
 inst/include/boost/math/tools/detail/polynomial_horner3_19.hpp                               |   40 
 inst/include/boost/math/tools/detail/polynomial_horner3_2.hpp                                |   10 
 inst/include/boost/math/tools/detail/polynomial_horner3_20.hpp                               |   42 
 inst/include/boost/math/tools/detail/polynomial_horner3_3.hpp                                |   10 
 inst/include/boost/math/tools/detail/polynomial_horner3_4.hpp                                |   10 
 inst/include/boost/math/tools/detail/polynomial_horner3_5.hpp                                |   12 
 inst/include/boost/math/tools/detail/polynomial_horner3_6.hpp                                |   14 
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 inst/include/boost/math/tools/detail/rational_horner1_10.hpp                                 |   22 
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 inst/include/boost/math/tools/detail/rational_horner1_17.hpp                                 |   36 
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 inst/include/boost/math/tools/detail/rational_horner1_2.hpp                                  |    6 
 inst/include/boost/math/tools/detail/rational_horner1_20.hpp                                 |   42 
 inst/include/boost/math/tools/detail/rational_horner1_3.hpp                                  |    8 
 inst/include/boost/math/tools/detail/rational_horner1_4.hpp                                  |   10 
 inst/include/boost/math/tools/detail/rational_horner1_5.hpp                                  |   12 
 inst/include/boost/math/tools/detail/rational_horner1_6.hpp                                  |   14 
 inst/include/boost/math/tools/detail/rational_horner1_7.hpp                                  |   16 
 inst/include/boost/math/tools/detail/rational_horner1_8.hpp                                  |   18 
 inst/include/boost/math/tools/detail/rational_horner1_9.hpp                                  |   20 
 inst/include/boost/math/tools/detail/rational_horner2_10.hpp                                 |   22 
 inst/include/boost/math/tools/detail/rational_horner2_11.hpp                                 |   24 
 inst/include/boost/math/tools/detail/rational_horner2_12.hpp                                 |   26 
 inst/include/boost/math/tools/detail/rational_horner2_13.hpp                                 |   28 
 inst/include/boost/math/tools/detail/rational_horner2_14.hpp                                 |   30 
 inst/include/boost/math/tools/detail/rational_horner2_15.hpp                                 |   32 
 inst/include/boost/math/tools/detail/rational_horner2_16.hpp                                 |   34 
 inst/include/boost/math/tools/detail/rational_horner2_17.hpp                                 |   36 
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 inst/include/boost/math/tools/detail/rational_horner2_2.hpp                                  |   10 
 inst/include/boost/math/tools/detail/rational_horner2_20.hpp                                 |   42 
 inst/include/boost/math/tools/detail/rational_horner2_3.hpp                                  |   10 
 inst/include/boost/math/tools/detail/rational_horner2_4.hpp                                  |   10 
 inst/include/boost/math/tools/detail/rational_horner2_5.hpp                                  |   12 
 inst/include/boost/math/tools/detail/rational_horner2_6.hpp                                  |   14 
 inst/include/boost/math/tools/detail/rational_horner2_7.hpp                                  |   16 
 inst/include/boost/math/tools/detail/rational_horner2_8.hpp                                  |   18 
 inst/include/boost/math/tools/detail/rational_horner2_9.hpp                                  |   20 
 inst/include/boost/math/tools/detail/rational_horner3_10.hpp                                 |   22 
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 inst/include/boost/math/tools/detail/rational_horner3_15.hpp                                 |   32 
 inst/include/boost/math/tools/detail/rational_horner3_16.hpp                                 |   34 
 inst/include/boost/math/tools/detail/rational_horner3_17.hpp                                 |   36 
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 inst/include/boost/math/tools/detail/rational_horner3_2.hpp                                  |   10 
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 inst/include/boost/math/tools/detail/rational_horner3_3.hpp                                  |   10 
 inst/include/boost/math/tools/detail/rational_horner3_4.hpp                                  |   10 
 inst/include/boost/math/tools/detail/rational_horner3_5.hpp                                  |   12 
 inst/include/boost/math/tools/detail/rational_horner3_6.hpp                                  |   14 
 inst/include/boost/math/tools/detail/rational_horner3_7.hpp                                  |   16 
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 inst/include/boost/math/tools/detail/rational_horner3_9.hpp                                  |   20 
 inst/include/boost/math/tools/fraction.hpp                                                   |   18 
 inst/include/boost/math/tools/minima.hpp                                                     |    2 
 inst/include/boost/math/tools/precision.hpp                                                  |  136 
 inst/include/boost/math/tools/promotion.hpp                                                  |   21 
 inst/include/boost/math/tools/rational.hpp                                                   |   32 
 inst/include/boost/math/tools/real_cast.hpp                                                  |    4 
 inst/include/boost/math/tools/roots.hpp                                                      |  451 -
 inst/include/boost/math/tools/series.hpp                                                     |   16 
 inst/include/boost/math/tools/toms748_solve.hpp                                              |    6 
 inst/include/boost/math/tools/traits.hpp                                                     |    7 
 inst/include/boost/math/tools/workaround.hpp                                                 |    4 
 inst/include/boost/math/tr1.hpp                                                              |    5 
 inst/include/boost/move/core.hpp                                                             |   65 
 inst/include/boost/move/default_delete.hpp                                                   |    6 
 inst/include/boost/move/detail/fwd_macros.hpp                                                |  266 
 inst/include/boost/move/detail/iterator_traits.hpp                                           |   18 
 inst/include/boost/move/detail/meta_utils.hpp                                                |  201 
 inst/include/boost/move/detail/meta_utils_core.hpp                                           |   26 
 inst/include/boost/move/detail/move_helpers.hpp                                              |  313 
 inst/include/boost/move/detail/std_ns_begin.hpp                                              |only
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 inst/include/boost/move/detail/workaround.hpp                                                |   10 
 inst/include/boost/move/unique_ptr.hpp                                                       |   26 
 inst/include/boost/move/utility_core.hpp                                                     |   78 
 inst/include/boost/mpi/collectives.hpp                                                       |  138 
 inst/include/boost/mpi/collectives/gatherv.hpp                                               |only
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 inst/include/boost/mpi/collectives/scan.hpp                                                  |    2 
 inst/include/boost/mpi/collectives/scatterv.hpp                                              |only
 inst/include/boost/mpi/communicator.hpp                                                      |   64 
 inst/include/boost/mpi/config.hpp                                                            |   25 
 inst/include/boost/mpi/datatype.hpp                                                          |   12 
 inst/include/boost/mpi/detail/forward_skeleton_iarchive.hpp                                  |   21 
 inst/include/boost/mpi/detail/forward_skeleton_oarchive.hpp                                  |   21 
 inst/include/boost/mpi/detail/ignore_skeleton_oarchive.hpp                                   |   22 
 inst/include/boost/mpi/detail/mpi_datatype_oarchive.hpp                                      |    9 
 inst/include/boost/mpi/nonblocking.hpp                                                       |   12 
 inst/include/boost/mpi/packed_iarchive.hpp                                                   |   22 
 inst/include/boost/mpi/packed_oarchive.hpp                                                   |   20 
 inst/include/boost/mpl/aux_/insert_range_impl.hpp                                            |   35 
 inst/include/boost/mpl/empty_base.hpp                                                        |   16 
 inst/include/boost/mpl/empty_sequence.hpp                                                    |    3 
 inst/include/boost/mpl/map/aux_/insert_range_impl.hpp                                        |only
 inst/include/boost/mpl/map/aux_/item.hpp                                                     |    3 
 inst/include/boost/mpl/map/map0.hpp                                                          |    1 
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 inst/include/boost/mpl/set/aux_/item.hpp                                                     |    2 
 inst/include/boost/mpl/set/set0.hpp                                                          |    1 
 inst/include/boost/mpl/string.hpp                                                            |    2 
 inst/include/boost/multi_index/detail/archive_constructed.hpp                                |    4 
 inst/include/boost/multi_index/detail/bucket_array.hpp                                       |    5 
 inst/include/boost/multi_index/detail/copy_map.hpp                                           |   15 
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 inst/include/boost/multi_index/detail/index_loader.hpp                                       |    5 
 inst/include/boost/multi_index/detail/index_matcher.hpp                                      |    5 
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 inst/include/boost/multi_index/detail/ord_index_impl.hpp                                     |only
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 inst/include/boost/multi_index/detail/seq_index_ops.hpp                                      |    6 
 inst/include/boost/multi_index/detail/value_compare.hpp                                      |    9 
 inst/include/boost/multi_index/hashed_index.hpp                                              |    2 
 inst/include/boost/multi_index/identity.hpp                                                  |   14 
 inst/include/boost/multi_index/member.hpp                                                    |    4 
 inst/include/boost/multi_index/ordered_index.hpp                                             | 1461 ---
 inst/include/boost/multi_index/ordered_index_fwd.hpp                                         |   93 
 inst/include/boost/multi_index/sequenced_index.hpp                                           |    8 
 inst/include/boost/multiprecision/cpp_bin_float.hpp                                          |   70 
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 inst/include/boost/multiprecision/cpp_dec_float.hpp                                          |  213 
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 inst/include/boost/multiprecision/detail/default_ops.hpp                                     |   48 
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 inst/include/boost/numeric/odeint/integrate/detail/integrate_n_steps.hpp                     |   18 
 inst/include/boost/numeric/odeint/integrate/detail/integrate_times.hpp                       |   26 
 inst/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp                           |    2 
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 inst/include/boost/numeric/odeint/stepper/bulirsch_stoer_dense_out.hpp                       |   46 
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 inst/include/boost/numeric/odeint/stepper/dense_output_runge_kutta.hpp                       |   20 
 inst/include/boost/numeric/odeint/stepper/generation/generation_controlled_runge_kutta.hpp   |   14 
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 inst/include/boost/numeric/odeint/stepper/generation/generation_rosenbrock4.hpp              |    7 
 inst/include/boost/numeric/odeint/stepper/generation/make_controlled.hpp                     |   22 
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 inst/include/boost/numeric/odeint/stepper/rosenbrock4_controller.hpp                         |   32 
 inst/include/boost/numeric/odeint/stepper/rosenbrock4_dense_output.hpp                       |   11 
 inst/include/boost/numeric/odeint/util/detail/less_with_sign.hpp                             |   10 
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 inst/include/boost/numeric/odeint/util/resizer.hpp                                           |    2 
 inst/include/boost/numeric/odeint/util/same_size.hpp                                         |    2 
 inst/include/boost/numeric/odeint/util/unwrap_reference.hpp                                  |    2 
 inst/include/boost/numeric/ublas/storage.hpp                                                 |    6 
 inst/include/boost/operators.hpp                                                             |   14 
 inst/include/boost/optional/optional.hpp                                                     |   54 
 inst/include/boost/optional/optional_io.hpp                                                  |    4 
 inst/include/boost/parameter/aux_/arg_list.hpp                                               |   31 
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 inst/include/boost/parameter/aux_/parenthesized_type.hpp                                     |   84 
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 inst/include/boost/parameter/aux_/tagged_argument.hpp                                        |    4 
 inst/include/boost/parameter/aux_/unwrap_cv_reference.hpp                                    |    6 
 inst/include/boost/parameter/binding.hpp                                                     |   30 
 inst/include/boost/parameter/keyword.hpp                                                     |   30 
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 inst/include/boost/phoenix/statement/detail/preprocessed/catch_push_back_40.hpp              | 1428 +++
 inst/include/boost/phoenix/statement/detail/preprocessed/catch_push_back_50.hpp              | 1886 ++++
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 inst/include/boost/polygon/detail/polygon_90_set_view.hpp                                    |    4 
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 inst/include/boost/polygon/detail/property_merge.hpp                                         |    6 
 inst/include/boost/polygon/detail/rectangle_formation.hpp                                    |    2 
 inst/include/boost/polygon/detail/scan_arbitrary.hpp                                         |    2 
 inst/include/boost/polygon/isotropy.hpp                                                      |   24 
 inst/include/boost/polygon/point_data.hpp                                                    |    8 
 inst/include/boost/polygon/polygon_45_set_data.hpp                                           |    4 
 inst/include/boost/polygon/polygon_90_set_data.hpp                                           |    6 
 inst/include/boost/polygon/polygon_set_data.hpp                                              |    6 
 inst/include/boost/polygon/polygon_traits.hpp                                                |   12 
 inst/include/boost/polygon/segment_data.hpp                                                  |    2 
 inst/include/boost/pool/detail/mutex.hpp                                                     |    2 
 inst/include/boost/predef.h                                                                  |    7 
 inst/include/boost/predef/architecture.h                                                     |    4 
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 inst/include/boost/predef/architecture/convex.h                                              |    8 
 inst/include/boost/predef/architecture/ia64.h                                                |    6 
 inst/include/boost/predef/architecture/m68k.h                                                |    7 
 inst/include/boost/predef/architecture/mips.h                                                |    7 
 inst/include/boost/predef/architecture/parisc.h                                              |    7 
 inst/include/boost/predef/architecture/ppc.h                                                 |    7 
 inst/include/boost/predef/architecture/pyramid.h                                             |    7 
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 inst/include/boost/program_options/detail/config_file.hpp                                    |   16 
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 inst/include/boost/progress.hpp                                                              |    7 
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 inst/include/boost/ptr_container                                                             |only
 inst/include/boost/python.hpp                                                                |    3 
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 inst/include/boost/python/bases.hpp                                                          |   18 
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 inst/include/boost/python/copy_non_const_reference.hpp                                       |    2 
 inst/include/boost/python/data_members.hpp                                                   |    4 
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 inst/include/boost/python/detail/config.hpp                                                  |    3 
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 inst/include/boost/python/detail/msvc_typeinfo.hpp                                           |   19 
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 inst/include/boost/python/detail/value_is_xxx.hpp                                            |   30 
 inst/include/boost/python/extract.hpp                                                        |    3 
 inst/include/boost/python/handle.hpp                                                         |   27 
 inst/include/boost/python/init.hpp                                                           |   22 
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 inst/include/boost/python/other.hpp                                                          |   62 
 inst/include/boost/python/proxy.hpp                                                          |    4 
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 inst/include/boost/python/register_ptr_to_python.hpp                                         |    2 
 inst/include/boost/python/return_arg.hpp                                                     |    2 
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 inst/include/boost/python/suite/indexing/indexing_suite.hpp                                  |    4 
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 inst/include/boost/python/type_id.hpp                                                        |   28 
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 inst/include/boost/random.hpp                                                                |    5 
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 inst/include/boost/random/seed_seq.hpp                                                       |   16 
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 inst/include/boost/random/uniform_01.hpp                                                     |   32 
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 inst/include/boost/random/uniform_smallint.hpp                                               |   32 
 inst/include/boost/range/adaptor/filtered.hpp                                                |   43 
 inst/include/boost/range/adaptor/strided.hpp                                                 |    2 
 inst/include/boost/range/detail/common.hpp                                                   |    5 
 inst/include/boost/range/difference_type.hpp                                                 |   22 
 inst/include/boost/range/iterator.hpp                                                        |   32 
 inst/include/boost/range/iterator_range_core.hpp                                             |    4 
 inst/include/boost/range/size.hpp                                                            |    9 
 inst/include/boost/range/size_type.hpp                                                       |   33 
 inst/include/boost/range/sub_range.hpp                                                       |    4 
 inst/include/boost/rational.hpp                                                              |   54 
 inst/include/boost/regex/config.hpp                                                          |   58 
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 inst/include/boost/regex/pattern_except.hpp                                                  |    4 
 inst/include/boost/regex/v4/basic_regex.hpp                                                  |   31 
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 inst/include/boost/regex/v4/iterator_traits.hpp                                              |    4 
 inst/include/boost/regex/v4/match_results.hpp                                                |   34 
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 inst/include/boost/regex/v4/perl_matcher.hpp                                                 |   55 
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 inst/include/boost/regex/v4/regex_match.hpp                                                  |    2 
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 inst/include/boost/regex/v4/regex_split.hpp                                                  |    8 
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 inst/include/boost/spirit/home/x3.hpp                                                        |    4 
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 inst/include/boost/spirit/home/x3/nonterminal.hpp                                            |    4 
 inst/include/boost/spirit/home/x3/nonterminal/debug_handler_state.hpp                        |    4 
 inst/include/boost/spirit/home/x3/nonterminal/detail/rule.hpp                                |   63 
 inst/include/boost/spirit/home/x3/nonterminal/rule.hpp                                       |   35 
 inst/include/boost/spirit/home/x3/nonterminal/simple_trace.hpp                               |    4 
 inst/include/boost/spirit/home/x3/numeric.hpp                                                |    4 
 inst/include/boost/spirit/home/x3/numeric/bool.hpp                                           |   93 
 inst/include/boost/spirit/home/x3/numeric/bool_policies.hpp                                  |   16 
 inst/include/boost/spirit/home/x3/numeric/int.hpp                                            |    4 
 inst/include/boost/spirit/home/x3/numeric/real_policies.hpp                                  |    4 
 inst/include/boost/spirit/home/x3/numeric/uint.hpp                                           |    4 
 inst/include/boost/spirit/home/x3/operator.hpp                                               |    4 
 inst/include/boost/spirit/home/x3/operator/alternative.hpp                                   |   15 
 inst/include/boost/spirit/home/x3/operator/and_predicate.hpp                                 |    6 
 inst/include/boost/spirit/home/x3/operator/detail/alternative.hpp                            |   35 
 inst/include/boost/spirit/home/x3/operator/detail/sequence.hpp                               |   62 
 inst/include/boost/spirit/home/x3/operator/difference.hpp                                    |    8 
 inst/include/boost/spirit/home/x3/operator/kleene.hpp                                        |    6 
 inst/include/boost/spirit/home/x3/operator/list.hpp                                          |    6 
 inst/include/boost/spirit/home/x3/operator/not_predicate.hpp                                 |    6 
 inst/include/boost/spirit/home/x3/operator/optional.hpp                                      |    6 
 inst/include/boost/spirit/home/x3/operator/plus.hpp                                          |    6 
 inst/include/boost/spirit/home/x3/operator/sequence.hpp                                      |   15 
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 inst/include/boost/spirit/home/x3/string/detail/no_case_string_parse.hpp                     |only
 inst/include/boost/spirit/home/x3/string/detail/string_parse.hpp                             |   16 
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 inst/include/boost/spirit/home/x3/string/literal_string.hpp                                  |  162 
 inst/include/boost/spirit/home/x3/string/symbols.hpp                                         |  146 
 inst/include/boost/spirit/home/x3/string/tst.hpp                                             |   16 
 inst/include/boost/spirit/home/x3/string/tst_map.hpp                                         |   12 
 inst/include/boost/spirit/home/x3/support/ast/variant.hpp                                    |   29 
 inst/include/boost/spirit/home/x3/support/context.hpp                                        |   46 
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 inst/include/boost/spirit/home/x3/support/numeric_utils/extract_int.hpp                      |    4 
 inst/include/boost/spirit/home/x3/support/numeric_utils/extract_real.hpp                     |    4 
 inst/include/boost/spirit/home/x3/support/numeric_utils/pow10.hpp                            |    4 
 inst/include/boost/spirit/home/x3/support/numeric_utils/sign.hpp                             |    4 
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 inst/include/boost/spirit/home/x3/support/traits/attribute_category.hpp                      |    4 
 inst/include/boost/spirit/home/x3/support/traits/attribute_of.hpp                            |    4 
 inst/include/boost/spirit/home/x3/support/traits/attribute_type.hpp                          |    4 
 inst/include/boost/spirit/home/x3/support/traits/container_traits.hpp                        |   34 
 inst/include/boost/spirit/home/x3/support/traits/handles_container.hpp                       |    4 
 inst/include/boost/spirit/home/x3/support/traits/has_attribute.hpp                           |    4 
 inst/include/boost/spirit/home/x3/support/traits/is_parser.hpp                               |    4 
 inst/include/boost/spirit/home/x3/support/traits/is_substitute.hpp                           |    4 
 inst/include/boost/spirit/home/x3/support/traits/is_variant.hpp                              |    4 
 inst/include/boost/spirit/home/x3/support/traits/make_attribute.hpp                          |    4 
 inst/include/boost/spirit/home/x3/support/traits/move_to.hpp                                 |    8 
 inst/include/boost/spirit/home/x3/support/traits/numeric_traits.hpp                          |    4 
 inst/include/boost/spirit/home/x3/support/traits/optional_traits.hpp                         |    4 
 inst/include/boost/spirit/home/x3/support/traits/print_attribute.hpp                         |    4 
 inst/include/boost/spirit/home/x3/support/traits/print_token.hpp                             |    4 
 inst/include/boost/spirit/home/x3/support/traits/string_traits.hpp                           |    4 
 inst/include/boost/spirit/home/x3/support/traits/transform_attribute.hpp                     |    4 
 inst/include/boost/spirit/home/x3/support/traits/tuple_traits.hpp                            |    4 
 inst/include/boost/spirit/home/x3/support/traits/value_traits.hpp                            |    4 
 inst/include/boost/spirit/home/x3/support/traits/variant_find_substitute.hpp                 |    4 
 inst/include/boost/spirit/home/x3/support/traits/variant_has_substitute.hpp                  |    4 
 inst/include/boost/spirit/home/x3/support/unused.hpp                                         |   11 
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 inst/include/boost/spirit/home/x3/support/utility/unrefcv.hpp                                |    4 
 inst/include/boost/spirit/home/x3/support/utility/utf8.hpp                                   |    7 
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 inst/include/boost/spirit/repository/home/karma/nonterminal/subrule.hpp                      |    4 
 inst/include/boost/spirit/repository/home/qi/directive/kwd.hpp                               |    2 
 inst/include/boost/spirit/repository/home/qi/nonterminal/subrule.hpp                         |    4 
 inst/include/boost/spirit/repository/home/qi/operator/keywords.hpp                           |    4 
 inst/include/boost/static_assert.hpp                                                         |   23 
 inst/include/boost/test/auto_unit_test.hpp                                                   |   12 
 inst/include/boost/test/debug.hpp                                                            |  109 
 inst/include/boost/test/debug_config.hpp                                                     |   14 
 inst/include/boost/test/detail/config.hpp                                                    |   51 
 inst/include/boost/test/detail/enable_warnings.hpp                                           |   24 
 inst/include/boost/test/detail/fwd_decl.hpp                                                  |   11 
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 inst/include/boost/test/detail/log_level.hpp                                                 |   11 
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 inst/include/boost/test/execution_monitor.hpp                                                |  521 -
 inst/include/boost/test/floating_point_comparison.hpp                                        |  284 
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 inst/include/boost/test/impl/compiler_log_formatter.ipp                                      |  124 
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 inst/include/boost/test/impl/framework.ipp                                                   | 1122 ++
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 inst/include/boost/test/impl/unit_test_monitor.ipp                                           |   50 
 inst/include/boost/test/impl/unit_test_parameters.ipp                                        | 1000 +-
 inst/include/boost/test/impl/xml_log_formatter.ipp                                           |  109 
 inst/include/boost/test/impl/xml_report_formatter.ipp                                        |   48 
 inst/include/boost/test/included/prg_exec_monitor.hpp                                        |    4 
 inst/include/boost/test/included/test_exec_monitor.hpp                                       |   13 
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 inst/include/boost/test/output/compiler_log_formatter.hpp                                    |   24 
 inst/include/boost/test/output/plain_report_formatter.hpp                                    |   13 
 inst/include/boost/test/output/xml_log_formatter.hpp                                         |   22 
 inst/include/boost/test/output/xml_report_formatter.hpp                                      |   12 
 inst/include/boost/test/prg_exec_monitor.hpp                                                 |   35 
 inst/include/boost/test/progress_monitor.hpp                                                 |   48 
 inst/include/boost/test/results_collector.hpp                                                |   82 
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 inst/include/boost/test/unit_test_log.hpp                                                    |   49 
 inst/include/boost/test/unit_test_log_formatter.hpp                                          |  213 
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 inst/include/boost/test/utils/assign_op.hpp                                                  |   12 
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 inst/include/boost/test/utils/basic_cstring/basic_cstring_fwd.hpp                            |   12 
 inst/include/boost/test/utils/basic_cstring/bcs_char_traits.hpp                              |   18 
 inst/include/boost/test/utils/basic_cstring/compare.hpp                                      |   50 
 inst/include/boost/test/utils/basic_cstring/io.hpp                                           |    8 
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 inst/include/boost/test/utils/trivial_singleton.hpp                                          |   33 
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 inst/include/boost/thread/futures/launch.hpp                                                 |    1 
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 inst/include/boost/thread/v2/thread.hpp                                                      |   17 
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 inst/include/boost/thread/win32/shared_mutex.hpp                                             |    4 
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 inst/include/boost/thread/win32/thread_primitives.hpp                                        |   62 
 inst/include/boost/timer/timer.hpp                                                           |    2 
 inst/include/boost/type_index/detail/compile_time_type_info.hpp                              |   12 
 inst/include/boost/type_index/stl_type_index.hpp                                             |    1 
 inst/include/boost/type_index/type_index_facade.hpp                                          |   12 
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 inst/include/boost/type_traits/add_cv.hpp                                                    |    9 
 inst/include/boost/type_traits/add_lvalue_reference.hpp                                      |   15 
 inst/include/boost/type_traits/add_pointer.hpp                                               |   23 
 inst/include/boost/type_traits/add_reference.hpp                                             |   41 
 inst/include/boost/type_traits/add_rvalue_reference.hpp                                      |   10 
 inst/include/boost/type_traits/add_volatile.hpp                                              |    9 
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 inst/include/boost/type_traits/detail/has_prefix_operator.hpp                                |   25 
 inst/include/boost/type_traits/detail/ice_and.hpp                                            |    7 
 inst/include/boost/type_traits/detail/ice_eq.hpp                                             |    7 
 inst/include/boost/type_traits/detail/ice_not.hpp                                            |    7 
 inst/include/boost/type_traits/detail/ice_or.hpp                                             |    7 
 inst/include/boost/type_traits/detail/is_function_ptr_helper.hpp                             |   18 
 inst/include/boost/type_traits/detail/is_function_ptr_tester.hpp                             |   17 
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 inst/include/boost/type_traits/floating_point_promotion.hpp                                  |   81 
 inst/include/boost/type_traits/has_bit_and.hpp                                               |   38 
 inst/include/boost/type_traits/has_bit_and_assign.hpp                                        |   46 
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 inst/include/boost/type_traits/has_bit_xor.hpp                                               |   38 
 inst/include/boost/type_traits/has_bit_xor_assign.hpp                                        |   46 
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 inst/include/boost/type_traits/has_divides.hpp                                               |   28 
 inst/include/boost/type_traits/has_divides_assign.hpp                                        |   36 
 inst/include/boost/type_traits/has_equal_to.hpp                                              |   40 
 inst/include/boost/type_traits/has_greater.hpp                                               |   40 
 inst/include/boost/type_traits/has_greater_equal.hpp                                         |   40 
 inst/include/boost/type_traits/has_left_shift.hpp                                            |   38 
 inst/include/boost/type_traits/has_left_shift_assign.hpp                                     |   46 
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 inst/include/boost/type_traits/has_less_equal.hpp                                            |   40 
 inst/include/boost/type_traits/has_logical_and.hpp                                           |   32 
 inst/include/boost/type_traits/has_logical_or.hpp                                            |   32 
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 inst/include/boost/type_traits/has_new_operator.hpp                                          |   23 
 inst/include/boost/type_traits/has_not_equal_to.hpp                                          |   40 
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 inst/include/boost/type_traits/has_plus_assign.hpp                                           |   62 
 inst/include/boost/type_traits/has_post_decrement.hpp                                        |   22 
 inst/include/boost/type_traits/has_post_increment.hpp                                        |   22 
 inst/include/boost/type_traits/has_pre_decrement.hpp                                         |   22 
 inst/include/boost/type_traits/has_pre_increment.hpp                                         |   22 
 inst/include/boost/type_traits/has_right_shift.hpp                                           |   38 
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 inst/include/boost/type_traits/integral_promotion.hpp                                        |   33 
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 inst/include/boost/type_traits/is_arithmetic.hpp                                             |   35 
 inst/include/boost/type_traits/is_array.hpp                                                  |   29 
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 inst/include/boost/type_traits/is_base_of.hpp                                                |   28 
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 inst/include/boost/type_traits/is_compound.hpp                                               |   26 
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 inst/include/boost/type_traits/is_enum.hpp                                                   |   56 
 inst/include/boost/type_traits/is_final.hpp                                                  |   23 
 inst/include/boost/type_traits/is_float.hpp                                                  |   11 
 inst/include/boost/type_traits/is_floating_point.hpp                                         |   21 
 inst/include/boost/type_traits/is_function.hpp                                               |   21 
 inst/include/boost/type_traits/is_fundamental.hpp                                            |   23 
 inst/include/boost/type_traits/is_integral.hpp                                               |   77 
 inst/include/boost/type_traits/is_lvalue_reference.hpp                                       |   20 
 inst/include/boost/type_traits/is_member_function_pointer.hpp                                |   43 
 inst/include/boost/type_traits/is_member_object_pointer.hpp                                  |   28 
 inst/include/boost/type_traits/is_member_pointer.hpp                                         |   34 
 inst/include/boost/type_traits/is_nothrow_move_assignable.hpp                                |   77 
 inst/include/boost/type_traits/is_nothrow_move_constructible.hpp                             |   99 
 inst/include/boost/type_traits/is_object.hpp                                                 |   31 
 inst/include/boost/type_traits/is_pod.hpp                                                    |   49 
 inst/include/boost/type_traits/is_pointer.hpp                                                |   65 
 inst/include/boost/type_traits/is_polymorphic.hpp                                            |   19 
 inst/include/boost/type_traits/is_reference.hpp                                              |   27 
 inst/include/boost/type_traits/is_rvalue_reference.hpp                                       |   12 
 inst/include/boost/type_traits/is_same.hpp                                                   |   12 
 inst/include/boost/type_traits/is_scalar.hpp                                                 |   34 
 inst/include/boost/type_traits/is_signed.hpp                                                 |  139 
 inst/include/boost/type_traits/is_stateless.hpp                                              |   31 
 inst/include/boost/type_traits/is_union.hpp                                                  |   38 
 inst/include/boost/type_traits/is_unsigned.hpp                                               |  142 
 inst/include/boost/type_traits/is_virtual_base_of.hpp                                        |   41 
 inst/include/boost/type_traits/is_void.hpp                                                   |   26 
 inst/include/boost/type_traits/is_volatile.hpp                                               |   59 
 inst/include/boost/type_traits/make_signed.hpp                                               |   90 
 inst/include/boost/type_traits/make_unsigned.hpp                                             |   89 
 inst/include/boost/type_traits/promote.hpp                                                   |   22 
 inst/include/boost/type_traits/rank.hpp                                                      |    9 
 inst/include/boost/type_traits/remove_all_extents.hpp                                        |   23 
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 inst/include/boost/type_traits/remove_extent.hpp                                             |   23 
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 man/BH-package.Rd                                                                            |    4 
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Package abn updated to version 0.86 with previous version 0.85 dated 2014-12-09

Title: Modelling Multivariate Data with Additive Bayesian Networks
Description: Bayesian network analysis is a form of probabilistic graphical models which derives from empirical data a directed acyclic graph, DAG, describing the dependency structure between random variables. An additive Bayesian network model consists of a form of a DAG where each node comprises a generalized linear model, GLM. Additive Bayesian network models are equivalent to Bayesian multivariate regression using graphical modelling, they generalises the usual multivariable regression, GLM, to multiple dependent variables. 'abn' provides routines to help determine optimal Bayesian network models for a given data set, where these models are used to identify statistical dependencies in messy, complex data. The additive formulation of these models is equivalent to multivariate generalised linear modelling (including mixed models with iid random effects). The usual term to describe this model selection process is structure discovery. The core functionality is concerned with model selection - determining the most robust empirical model of data from interdependent variables. Laplace approximations are used to estimate goodness of fit metrics and model parameters, and wrappers are also included to the INLA package which can be obtained from http://www.r-inla.org. It is recommended the testing version, which can be downloaded by running: source("http://www.math.ntnu.no/inla/givemeINLA-testing.R"). A comprehensive set of documented case studies, numerical accuracy/quality assurance exercises, and additional documentation are available from the abn website.
Author: Fraser Ian Lewis [aut], Marta Pittavino [cre, ctb], Reinhard Furrer [ctb]
Maintainer: Marta Pittavino <marta.pittavino@math.uzh.ch>

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Package uniah updated to version 0.3 with previous version 0.2 dated 2015-12-16

Title: Unimodal Additive Hazards Model
Description: Nonparametric estimation of a unimodal or U-shape covariate effect under additive hazards model.
Author: Yunro Chung [cre], Anastasia Ivanova, Michael G. Hudgens and Jason P. Fine
Maintainer: Yunro Chung <yunro@live.unc.edu>

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Package Rsolnp updated to version 1.16 with previous version 1.15 dated 2014-11-24

Title: General Non-Linear Optimization
Description: General Non-linear Optimization Using Augmented Lagrange Multiplier Method.
Author: Alexios Ghalanos and Stefan Theussl
Maintainer: Alexios Ghalanos <alexios@4dscape.com>

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Package rmgarch updated to version 1.3-0 with previous version 1.2-9 dated 2015-07-02

Title: Multivariate GARCH Models
Description: Feasible multivariate GARCH models including DCC, GO-GARCH and Copula-GARCH.
Author: Alexios Ghalanos <alexios@4dscape.com>
Maintainer: Alexios Ghalanos <alexios@4dscape.com>

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Package lamW updated to version 1.0.0 with previous version 0.1-2 dated 2015-10-08

Title: Lambert-W Function
Description: Implements both real-valued branches of the Lambert-W function, also known as the product logarithm, without the need for installing the entire GSL.
Author: Avraham Adler [aut, cph, cre]
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>

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Package BiasedUrn updated to version 1.07 with previous version 1.06.1 dated 2013-12-29

Title: Biased Urn Model Distributions
Description: Statistical models of biased sampling in the form of univariate and multivariate noncentral hypergeometric distributions, including Wallenius' noncentral hypergeometric distribution and Fisher's noncentral hypergeometric distribution (also called extended hypergeometric distribution). See vignette("UrnTheory") for explanation of these distributions.
Author: Agner Fog
Maintainer: Agner Fog <agner@agner.org>

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Package BEST updated to version 0.4.0 with previous version 0.3.0 dated 2015-07-01

Title: Bayesian Estimation Supersedes the t-Test
Description: An alternative to t-tests, producing posterior estimates for group means and standard deviations and their differences and effect sizes.
Author: John K. Kruschke and Mike Meredith
Maintainer: Mike Meredith <mmeredith@wcs.org>

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