Wed, 30 Dec 2015

Package statar updated to version 0.4.0 with previous version 0.3.0 dated 2015-06-07

Title: Tools Inspired by Stata to Manipulate Tabular Data
Description: A set of tools inspired by Stata to explore data.frames (summarize, tabulate, xtile, pctile, binscatter, elapsed quarters/month, lead/lag).
Author: Matthieu Gomez [aut, cre]
Maintainer: Matthieu Gomez <mattg@princeton.edu>

Diff between statar versions 0.3.0 dated 2015-06-07 and 0.4.0 dated 2015-12-30

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More information about statar at CRAN
Permanent link

New package webp with initial version 0.2
Package: webp
Type: Package
Title: A New Format for Lossless and Lossy Image Compression
Version: 0.2
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Description: Lossless webp images are 26% smaller in size compared to PNG. Lossy webp images are 25-34% smaller in size compared to JPEG. This package reads and writes webp images into a 3 (rgb) or 4 (rgba) channel bitmap array using conventions from the 'jpeg' and 'png' packages.
License: MIT + file LICENSE
URL: https://github.com/jeroenooms/webp https://developers.google.com/speed/webp
BugReports: https://github.com/jeroenooms/webp/issues
LazyData: TRUE
Suggests: jpeg, png
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2015-12-30 17:52:33 UTC; jeroen
Repository: CRAN
Date/Publication: 2015-12-30 23:19:29

More information about webp at CRAN
Permanent link

Package soundecology updated to version 1.3.1 with previous version 1.3 dated 2015-05-02

Title: Soundscape Ecology
Description: Functions to calculate indices for soundscape ecology and other ecology research that uses audio recordings.
Author: Luis J. Villanueva-Rivera and Bryan C. Pijanowski
Maintainer: Luis J. Villanueva-Rivera <ljvillanueva@coquipr.com>

Diff between soundecology versions 1.3 dated 2015-05-02 and 1.3.1 dated 2015-12-30

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More information about soundecology at CRAN
Permanent link

Package RNeXML updated to version 2.0.5 with previous version 2.0.4 dated 2015-10-14

Title: Semantically Rich I/O for the 'NeXML' Format
Description: Provides access to phyloinformatic data in 'NeXML' format. The package should add new functionality to R such as the possibility to manipulate 'NeXML' objects in more various and refined way and compatibility with 'ape' objects.
Author: Carl Boettiger [cre, aut], Scott Chamberlain [aut], Hilmar Lapp [aut], Kseniia Shumelchyk [aut], Rutger Vos [aut]
Maintainer: Carl Boettiger <cboettig@gmail.com>

Diff between RNeXML versions 2.0.4 dated 2015-10-14 and 2.0.5 dated 2015-12-30

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More information about RNeXML at CRAN
Permanent link

Package nat updated to version 1.8.1 with previous version 1.7.0 dated 2015-07-01

Title: NeuroAnatomy Toolbox for Analysis of 3D Image Data
Description: NeuroAnatomy Toolbox (nat) enables analysis and visualisation of 3D biological image data, especially traced neurons. Reads and writes 3D images in NRRD and 'Amira' AmiraMesh formats and reads surfaces in 'Amira' hxsurf format. Traced neurons can be imported from and written to SWC and 'Amira' LineSet and SkeletonGraph formats. These data can then be visualised in 3D via 'rgl', manipulated including applying calculated registrations, e.g. using the 'CMTK' registration suite, and analysed. There is also a simple representation for neurons that have been subjected to 3D skeletonisation but not formally traced; this allows morphological comparison between neurons including searches and clustering (via the 'nat.nblast' extension package).
Author: Greg Jefferis and James Manton
Maintainer: Greg Jefferis <jefferis@gmail.com>

Diff between nat versions 1.7.0 dated 2015-07-01 and 1.8.1 dated 2015-12-30

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More information about nat at CRAN
Permanent link

Package GGally updated to version 1.0.0 with previous version 0.5.0 dated 2014-12-01

Title: Extension to ggplot2
Description: The R package \href{http://docs.ggplot2.org/current/}{ggplot2} is a plotting system based on the grammar of graphics. \href{https:// ggobi.github.io/ggally}{GGally} extends ggplot2 by adding several functions to reduce the complexity of combining geoms with transformed data. Some of these functions include a pairwise plot matrix, a scatterplot plot matrix, a parallel coordinates plot, a survival plot, and several functions to plot networks.
Author: Barret Schloerke [aut, cre] (author for ggpairs and ggally_*. contributor for all functions.), Jason Crowley [aut] (ggparcoord), Di Cook [aut, ths] (ggscatmat, gglyph), Heike Hofmann [ths], Hadley Wickham [ths], Francois Briatte [aut] (ggcorr, ggnet, ggnet2), Moritz Marbach [aut] (ggnet, ggnet2), Edwin Thoen [aut] (ggsurv), Amos Elberg [aut] (ggnetworkmap)
Maintainer: Barret Schloerke <schloerke@gmail.com>

Diff between GGally versions 0.5.0 dated 2014-12-01 and 1.0.0 dated 2015-12-30

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New package geomnet with initial version 0.0.1
Package: geomnet
Type: Package
Title: Network Visualization in the 'ggplot2' Framework
Version: 0.0.1
Date: 2015-12-30
Author: Samantha Tyner, Heike Hofmann
Maintainer: Samantha Tyner <sctyner@iastate.edu>
Description: Network visualization in the 'ggplot2' framework. Network functionality is provided in a single 'ggplot2' layer by calling the geom 'net'. Layouts are calculated using the 'sna' package, example networks are included.
License: GPL (>= 2)
LazyData: TRUE
Depends: R (>= 2.14), ggplot2 (>= 1.0.1.9003)
Imports: sna, network
Suggests: dplyr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2015-12-30 18:00:56 UTC; samanthatyner
Repository: CRAN
Date/Publication: 2015-12-31 00:02:33

More information about geomnet at CRAN
Permanent link

Package gapminder updated to version 0.2.0 with previous version 0.1.0 dated 2015-03-17

Title: Data from Gapminder
Description: An excerpt of the data available at Gapminder.org. For each of 142 countries, the package provides values for life expectancy, GDP per capita, and population, every five years, from 1952 to 2007.
Author: Jennifer Bryan [aut, cre]
Maintainer: Jennifer Bryan <jenny@stat.ubc.ca>

Diff between gapminder versions 0.1.0 dated 2015-03-17 and 0.2.0 dated 2015-12-30

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More information about gapminder at CRAN
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Package future updated to version 0.10.0 with previous version 0.9.0 dated 2015-12-12

Title: A Future API for R
Description: A Future API for R is provided. In programming, a future is an abstraction for a value that may be available at some point in the future. The state of a future can either be unresolved or resolved. As soon as it is resolved, the value is available. Futures are useful constructs in for instance concurrent evaluation, e.g. multicore parallel processing and distributed processing on compute clusters. The purpose of this package is to provide a lightweight interface for using futures in R. Functions 'future()' and 'value()' exist for creating futures and requesting their values. An infix assignment operator '%<=%' exists for creating futures whose values are accessible by the assigned variables (as promises). This package implements the synchronous "lazy" and "eager" futures, and the asynchronous "multicore" future (not on Windows). Additional types of futures are provided by other packages enhancing this package.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>

Diff between future versions 0.9.0 dated 2015-12-12 and 0.10.0 dated 2015-12-30

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Package choroplethrAdmin1 updated to version 1.1.0 with previous version 1.0.0 dated 2014-12-02

Title: Contains an Administrative-Level-1 Map of the World
Description: Contains an administrative-level-1 map of the world. Administrative-level-1 is the generic term for the largest sub-national subdivision of a country. This package was created for use with the choroplethr package.
Author: Ari Lamstein <arilamstein@gmail.com>
Maintainer: Ari Lamstein <arilamstein@gmail.com>

Diff between choroplethrAdmin1 versions 1.0.0 dated 2014-12-02 and 1.1.0 dated 2015-12-30

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Package bc3net updated to version 1.0.3 with previous version 1.0.2 dated 2013-04-07

Title: Gene Regulatory Network Inference with Bc3net
Description: Implementation of the BC3NET algorithm for gene regulatory network inference (de Matos Simoes and Frank Emmert-Streib, Bagging Statistical Network Inference from Large-Scale Gene Expression Data, PLoS ONE 7(3): e33624).
Author: Ricardo de Matos Simoes [aut, cre], Frank Emmert-Streib [aut]
Maintainer: Ricardo de Matos Simoes <ricardo_dematossimoes@dfci.harvard.edu>

Diff between bc3net versions 1.0.2 dated 2013-04-07 and 1.0.3 dated 2015-12-30

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Package acc updated to version 1.2.4 with previous version 1.2.3 dated 2015-12-30

Title: Functions for Processing and Analyzing Accelerometer Data
Description: Processes accelerometer data from uni-axial and tri-axial devices, and generates data summaries. Also includes functions to plot, analyze, and simulate accelerometer data.
Author: Jaejoon Song, Matthew G. Cox
Maintainer: Jaejoon Song <jjsong2@mdanderson.org>

Diff between acc versions 1.2.3 dated 2015-12-30 and 1.2.4 dated 2015-12-30

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Package RcmdrPlugin.KMggplot2 updated to version 0.2-3 with previous version 0.2-2 dated 2015-12-22

Title: An Rcmdr Plug-in for Kaplan-Meier Plots and Other Plots by Using the ggplot2 Package
Description: A GUI front-end for ggplot2 allows Kaplan-Meier plot, histogram, Q-Q plot, box plot, errorbar plot, scatter plot, line chart, pie chart, bar chart, contour plot, and distribution plot.
Author: Triad sou. and Kengo NAGASHIMA
Maintainer: Triad sou. <triadsou@gmail.com>

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Package sdmvspecies updated to version 0.3.2 with previous version 0.3.1 dated 2014-09-19

Title: Create Virtual Species for Species Distribution Modelling
Description: A software package help user to create virtual species for species distribution modelling. It includes several methods to help user to create virtual species distribution map. Those maps can be used for Species Distribution Modelling (SDM) study. SDM use environmental data for sites of occurrence of a species to predict all the sites where the environmental conditions are suitable for the species to persist, and may be expected to occur.
Author: Xiaoquan Kong [aut, cre, cph], Renyan Duan [ths], Minyi Huang [ths]
Maintainer: Xiaoquan Kong <u1mail2me@gmail.com>

Diff between sdmvspecies versions 0.3.1 dated 2014-09-19 and 0.3.2 dated 2015-12-30

 DESCRIPTION                                         |   43 ++++++----
 MD5                                                 |   64 +++++++--------
 NAMESPACE                                           |    9 --
 R/artificial_bell_response.R                        |   19 +---
 R/auto_PCA.R                                        |    4 
 R/config_stack.R                                    |   12 +-
 R/niche_synthese.R                                  |   45 +++++-----
 R/pick_mean.R                                       |   19 ++--
 R/pick_median.R                                     |   19 ++--
 R/rescale.R                                         |   17 +---
 R/sdmvspecies.R                                     |   19 ++--
 build/vignette.rds                                  |binary
 inst/doc/sdmvspecies.R                              |   80 ++++++++++---------
 inst/doc/sdmvspecies.Rnw                            |   82 +++++++++++---------
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 inst/tests/testthat/test_artificial_bell_response.R |   28 +++---
 inst/tests/testthat/test_auto_PCA.R                 |   22 ++---
 inst/tests/testthat/test_config_stack.R             |   12 +-
 inst/tests/testthat/test_niche_synthese.R           |   20 ++--
 inst/tests/testthat/test_pick_mean.R                |   34 ++++----
 inst/tests/testthat/test_pick_median.R              |   36 ++++----
 inst/tests/testthat/test_rescale.R                  |   18 ++--
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 vignettes/sdmvspecies.Rnw                           |   82 +++++++++++---------
 33 files changed, 377 insertions(+), 342 deletions(-)

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Package plspm.formula updated to version 1.0.1 with previous version 1.0 dated 2015-12-19

Title: Formula Based PLS Path Modeling
Description: The main objective is to make easy the PLS Path Modeling with R using the package 'plspm'. It compute automatically the inner matrix and the outer list the 'plspm' function need simply by specify the model using formulas.
Author: ACHIEPO Odilon Yapo M. [aut, cre]
Maintainer: ACHIEPO Odilon Yapo M. <kingodilon@gmail.com>

Diff between plspm.formula versions 1.0 dated 2015-12-19 and 1.0.1 dated 2015-12-30

 plspm.formula-1.0.1/plspm.formula/DESCRIPTION                  |   10 +++++-----
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 5 files changed, 13 insertions(+), 16 deletions(-)

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New package geoelectrics with initial version 0.1.5
Package: geoelectrics
Title: 3D-Visualization of Geoelectric Resistivity Measurement Profiles
Version: 0.1.5
Author: Anja Kleebaum <anja.kleebaum@stmail.uni-bayreuth.de>
Maintainer: Anja Kleebaum <anja.kleebaum@stmail.uni-bayreuth.de>
Description: Visualizes two-dimensional geoelectric resistivity measurement profiles in three dimensions.
Depends: R (>= 2.10), lattice, rgl, fields
Imports: methods
License: GPL
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2015-12-30 13:30:44 UTC; anja
Repository: CRAN
Date/Publication: 2015-12-30 16:54:37

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New package textmineR with initial version 1.5.0
Package: textmineR
Title: Functions for Text Mining and Topic Modeling
Version: 1.5.0
Date: 2015-12-28
Author: "Thomas W. Jones <jones.thos.w@gmail.com>"
Maintainer: Thomas W. Jones <jones.thos.w@gmail.com>
Description: An aid for text mining in R, with a syntax that is more familiar to experienced R users. Also, implements various functions related to topic modeling. It works well with with the "lda" package by J. Chang.
Depends: R (>= 3.0.2), Matrix
Imports: lda, parallel, tm, RWeka, Rcpp, RcppProgress
License: GPL (>= 3)
LazyData: true
LinkingTo: Rcpp, RcppArmadillo, RcppProgress
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2015-12-30 04:04:06 UTC; tommy
Repository: CRAN
Date/Publication: 2015-12-30 11:54:12

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Package spdynmod updated to version 1.1.3 with previous version 1.1.2 dated 2015-11-06

Title: Spatio-Dynamic Wetland Plant Communities Model
Description: A spatio-dynamic modelling package that focuses on three characteristic wetland plant communities in a semiarid Mediterranean wetland in response to hydrological pressures from the catchment. The package includes the data on watershed hydrological pressure and the initial raster maps of plant communities but also allows for random initial distribution of plant communities. Ongoing developments of the package focus on offering easy to use tools for creating other spatio-dynamic models.
Author: Javier Martinez-Lopez <javi.martinez.lopez@gmail.com>, Babak Naimi <naimi.b@gmail.com>, Julia Martinez-Fernandez <juliamf@um.es>
Maintainer: Javier Martinez-Lopez <javi.martinez.lopez@gmail.com>

Diff between spdynmod versions 1.1.2 dated 2015-11-06 and 1.1.3 dated 2015-12-30

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 NAMESPACE                 |    2 +-
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 8 files changed, 19 insertions(+), 15 deletions(-)

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Package shinyjs updated to version 0.3.0 with previous version 0.2.3 dated 2015-11-08

Title: Perform Common JavaScript Operations in Shiny Apps using Plain R Code
Description: Perform common JavaScript operations in Shiny applications without having to know any JavaScript. Examples include: hiding an element, disabling an input, resetting an input back to its original value, delaying code execution by a few seconds, and many more useful functions. 'shinyjs' can also be used to easily run your own custom JavaScript functions from R.
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali <daattali@gmail.com>

Diff between shinyjs versions 0.2.3 dated 2015-11-08 and 0.3.0 dated 2015-12-30

 DESCRIPTION                         |    8 +-
 MD5                                 |   32 ++++----
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 README.md                           |   22 +++---
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Package seqHMM updated to version 1.0.3-1 with previous version 1.0.3 dated 2015-12-23

Title: Hidden Markov Models for Life Sequences and Other Multivariate, Multichannel Categorical Time Series
Description: Designed for fitting hidden (latent) Markov models and mixture hidden Markov models for social sequence data and other categorical time series. Also some more restricted versions of these type of models are available: Markov models, mixture Markov models, and latent class models. The package supports models for one or multiple subjects with one or multiple parallel sequences (channels). External covariates can be added to explain cluster membership in mixture models. The package provides functions for evaluating and comparing models, as well as functions for easy plotting of multichannel sequence data and hidden Markov models. Models are estimated using maximum likelihood via the EM algorithm and/or direct numerical maximization with analytical gradients. All main algorithms are written in C++ with support for parallel computation.
Author: Jouni Helske, Satu Helske
Maintainer: Jouni Helske <jouni.helske@jyu.fi>

Diff between seqHMM versions 1.0.3 dated 2015-12-23 and 1.0.3-1 dated 2015-12-30

 DESCRIPTION         |    8 +++---
 MD5                 |   22 +++++++++----------
 NEWS                |    8 ++++++
 R/mhmm_biofam.R     |    6 ++---
 R/mhmm_mvad.R       |    6 ++---
 R/mssplot.R         |    6 ++---
 R/plot.mhmm.R       |   35 ++++++++++++++----------------
 inst/doc/seqHMM.pdf |   60 ++++++++++++++++++++++++++--------------------------
 man/mhmm_biofam.Rd  |    6 ++---
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 man/mssplot.Rd      |    6 ++---
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New package pseval with initial version 1.0.0
Package: pseval
Type: Package
Title: Methods for Evaluating Principal Surrogates of Treatment Response
Version: 1.0.0
Date: 2015-12-28
Author: Michael C Sachs
Maintainer: Michael C Sachs <sachsmc@gmail.com>
Description: Contains the core methods for the evaluation of principal surrogates in a single clinical trial. Provides a flexible interface for defining models for the risk given treatment and the surrogate, the models for integration over the missing counterfactual surrogate responses, and the estimation methods. Estimated maximum likelihood and pseudo-score can be used for estimation, and the bootstrap for inference. A variety of post-estimation summary methods are provided, including print, summary, plot, and testing.
License: MIT + file LICENSE
LazyData: TRUE
Suggests: ggplot2, testthat, knitr, printr
Imports: survival
VignetteBuilder: knitr
RoxygenNote: 5.0.1
Additional_repositories: http://yihui.name/xran
NeedsCompilation: no
Packaged: 2015-12-29 22:51:11 UTC; sachsmc
Repository: CRAN
Date/Publication: 2015-12-30 11:46:39

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Package ifctools updated to version 0.3.2 with previous version 0.3.1 dated 2015-05-27

Title: Italian Fiscal Code ('Codice Fiscale') Utilities
Description: Provides utility functions to deal with Italian fiscal code ('codice fiscale').
Author: Luca Braglia [aut, cre]
Maintainer: Luca Braglia <lbraglia@gmail.com>

Diff between ifctools versions 0.3.1 dated 2015-05-27 and 0.3.2 dated 2015-12-30

 DESCRIPTION          |   16 ++++++++--------
 MD5                  |   18 +++++++++---------
 NAMESPACE            |    3 ++-
 R/guess_fc.R         |    2 +-
 R/ifctools-package.R |    1 +
 R/wrong_fc.R         |    2 +-
 README.md            |    8 ++++++--
 man/guess_fc.Rd      |    4 +++-
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Package GSE updated to version 3.2.3 with previous version 3.2.2 dated 2015-09-24

Title: Robust Estimation in the Presence of Cellwise and Casewise Contamination and Missing Data
Description: Robust Estimation of Multivariate Location and Scatter in the Presence of Cellwise and Casewise Contamination and Missing Data.
Author: Andy Leung, Mike Danilov, Victor Yohai, Ruben Zamar
Maintainer: Andy Leung <andy.leung@stat.ubc.ca>

Diff between GSE versions 3.2.2 dated 2015-09-24 and 3.2.3 dated 2015-12-30

 ChangeLog               |    4 ++
 DESCRIPTION             |    8 ++---
 MD5                     |   30 ++++++++++----------
 R/GSE-utils.R           |   70 ++++++++++++++++++++++++++++++++++++++++++++++--
 R/GSE.R                 |   45 +++++++++++++++++-------------
 R/TSGS.R                |    4 ++
 R/generic.R             |    3 --
 R/huberPairwise.R       |    4 +-
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 man/emve.Rd             |   33 ----------------------
 man/simulation-tools.Rd |    6 ++--
 src/gse.cpp             |   41 +++++++++++++---------------
 16 files changed, 175 insertions(+), 144 deletions(-)

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Package gRain updated to version 1.2-5 with previous version 1.2-4 dated 2015-09-10

Title: Graphical Independence Networks
Description: Probability propagation in graphical independence networks, also known as Bayesian networks or probabilistic expert systems.
Author: Søren Højsgaard
Maintainer: Søren Højsgaard

Diff between gRain versions 1.2-4 dated 2015-09-10 and 1.2-5 dated 2015-12-30

 ChangeLog                |    7 
 DESCRIPTION              |    8 
 MD5                      |   14 
 R/RcppExports.R          |   22 -
 R/display.R              |    5 
 build/vignette.rds       |binary
 inst/doc/gRain-intro.R   |  674 +++++++++++++++++++++++------------------------
 inst/doc/gRain-intro.pdf |binary
 8 files changed, 369 insertions(+), 361 deletions(-)

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New package BIOdry with initial version 0.2
Package: BIOdry
Type: Package
Title: Multilevel Modeling of Dendroclimatical Fluctuations
Version: 0.2
Author: Wilson Lara <wilarhen@gmail.com>, Felipe Bravo <fbravo@pvs.uva.es>
Date: 2015-12-27
Maintainer: Wilson Lara <wilarhen@gmail.com>
Description: Multilevel data frames of tree rings and climate are modeled into normalized fluctuations of tree growth and aridity. Modeled fluctuations (model frames) are compared with Mantel correlograms on multiple levels defined by sample design. Package implementation can be understood by running examples in functions modelFrame and ringApply.
License: GPL-3
Depends: nlme, ecodist
LazyData: TRUE
NeedsCompilation: no
Packaged: 2015-12-29 16:57:29 UTC; wilar
Repository: CRAN
Date/Publication: 2015-12-30 11:52:21

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Package acc updated to version 1.2.3 with previous version 1.1.7 dated 2015-07-17

Title: Functions for Processing and Analyzing Accelerometer Data
Description: Processes accelerometer data from uni-axial and tri-axial devices, and generates data summaries. Also includes functions to plot, analyze, and simulate accelerometer data.
Author: Jaejoon Song, Matthew G. Cox
Maintainer: Jaejoon Song <jjsong2@mdanderson.org>

Diff between acc versions 1.1.7 dated 2015-07-17 and 1.2.3 dated 2015-12-30

 acc-1.1.7/acc/R/readRaw.R            |only
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 acc-1.2.3/acc/DESCRIPTION            |   16 ++++++++------
 acc-1.2.3/acc/MD5                    |   38 +++++++++++++++++++++++------------
 acc-1.2.3/acc/NAMESPACE              |   14 ++++++++++--
 acc-1.2.3/acc/R/NHANES.R             |only
 acc-1.2.3/acc/R/accSummary.R         |   10 +++++++--
 acc-1.2.3/acc/R/aee.R                |only
 acc-1.2.3/acc/R/aeefit.R             |only
 acc-1.2.3/acc/R/aggAcc.R             |    5 ++--
 acc-1.2.3/acc/R/internal.R           |only
 acc-1.2.3/acc/R/readCounts.R         |only
 acc-1.2.3/acc/R/readCountsBatch.R    |only
 acc-1.2.3/acc/R/summary.aeefit.R     |only
 acc-1.2.3/acc/R/weight.R             |only
 acc-1.2.3/acc/data                   |only
 acc-1.2.3/acc/man/NHANES.Rd          |only
 acc-1.2.3/acc/man/acc.Rd             |   14 ++++++------
 acc-1.2.3/acc/man/accBatch.Rd        |    6 ++---
 acc-1.2.3/acc/man/accSummary.Rd      |   20 +++++++++---------
 acc-1.2.3/acc/man/aee.Rd             |only
 acc-1.2.3/acc/man/aeefit.Rd          |only
 acc-1.2.3/acc/man/readCounts.Rd      |only
 acc-1.2.3/acc/man/readCountsBatch.Rd |only
 acc-1.2.3/acc/man/simAcc.Rd          |    2 -
 acc-1.2.3/acc/man/summary.aeefit.Rd  |only
 acc-1.2.3/acc/man/weight.Rd          |only
 30 files changed, 78 insertions(+), 47 deletions(-)

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Package TransferEntropy updated to version 1.1 with previous version 1.0 dated 2015-12-26

Title: The Transfer Entropy Package
Description: Estimates the transfer entropy from one time series to another, where each time series consists of continuous random variables. The transfer entropy is an extension of mutual information which takes into account the direction of information flow, under the assumption that the underlying processes can be described by a Markov model. Two estimation methods are provided. The first calculates transfer entropy as the difference of mutual information. Mutual information is estimated using the Kraskov method, which builds on a nearest-neighbor framework (see package references). The second estimation method estimate transfer entropy via the a generalized correlation sum.
Author: Ghazaleh Haratinezhad Torbati [aut, cre], Glenn Lawyer [aut]
Maintainer: Ghazaleh Haratinezhad Torbati <ghazaleh@mpi-inf.mpg.de>

Diff between TransferEntropy versions 1.0 dated 2015-12-26 and 1.1 dated 2015-12-30

 DESCRIPTION                    |   12 ++++++------
 MD5                            |   11 ++++++-----
 build/partial.rdb              |binary
 inst                           |only
 src/RcppExports.cpp            |   20 ++++++++++++++++++++
 src/ann_1.1.2/src/kd_split.cpp |    6 +++---
 src/compute_TE.cpp             |   22 +++++++++++++++++++---
 7 files changed, 54 insertions(+), 17 deletions(-)

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Package rvalues updated to version 0.6 with previous version 0.3 dated 2015-01-28

Title: R-Values for Ranking in High-Dimensional Settings
Description: A collection of functions for computing "r-values" from various kinds of user input such as MCMC output or a list of effect size estimates and associated standard errors. Given a large collection of measurement units, the r-value, r, of a particular unit is a reported percentile that may be interpreted as the smallest percentile at which the unit should be placed in the top r-fraction of units.
Author: Nicholas Henderson [cre], Michael Newton [aut]
Maintainer: Nicholas Henderson <nhenders@stat.wisc.edu>

Diff between rvalues versions 0.3 dated 2015-01-28 and 0.6 dated 2015-12-30

 DESCRIPTION           |   22 +++++++----
 MD5                   |   57 +++++++++++++++-------------
 NAMESPACE             |   23 ++++-------
 R/HyperEstimate.R     |    3 +
 R/NPagrid.R           |   99 +++++++++++++++++++++++++++++---------------------
 R/NPestBinomial.R     |   44 +++++++++++++++-------
 R/NPestNormal.R       |   50 ++++++++++++++++---------
 R/NPestPoisson.R      |   43 ++++++++++++++-------
 R/NPestT.R            |   72 +++++++++++++++++++++---------------
 R/PostPercentile.R    |    1 
 R/ThetaQuantiles.R    |    3 -
 R/Valpha.R            |   11 ++---
 R/agrid_fns.R         |    8 ++--
 R/npml.R              |   15 ++++++-
 R/rvalueBoot.R        |    2 -
 R/rvalueGuts.R        |   27 ++++++++-----
 R/rvalues.R           |   47 +++++++++++++----------
 R/rvaluesMCMC.R       |    8 ++--
 README.md             |only
 data/NBA1314.rda      |only
 data/datalist         |    1 
 man/NBA1314.Rd        |only
 man/OverlapCurve.Rd   |    2 -
 man/PostPercentile.Rd |    2 -
 man/Valpha.Rd         |    4 +-
 man/mroot.Rd          |    2 -
 man/rvalueBoot.Rd     |    2 -
 man/rvalues.Rd        |    6 +--
 man/rvaluesMCMC.Rd    |    4 +-
 src/Vcut.c            |   32 +++++++++++++---
 src/zeroin.c          |    2 -
 31 files changed, 357 insertions(+), 235 deletions(-)

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New package robreg3S with initial version 0.3
Package: robreg3S
Type: Package
Title: Three-Step Regression and Inference for Cellwise and Casewise Contamination
Version: 0.3
Date: 2015-12-28
Author: Andy Leung, Hongyang Zhang, Ruben Zamar
Maintainer: Andy Leung <andy.leung@stat.ubc.ca>
Description: Three-step regression and inference for cellwise and casewise contamination.
Depends: GSE, MASS
Imports: robustbase
License: GPL (>= 2)
Packaged: 2015-12-30 02:02:57 UTC; Andy
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-12-30 08:36:45

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Package nhanesA updated to version 0.6.2.1 with previous version 0.6.2 dated 2015-12-28

Title: NHANES Data Retrieval
Description: Utility to retrieve data from the National Health and Nutrition Examination Survey (NHANES).
Author: Christopher Endres
Maintainer: Christopher Endres <cjendres1@gmail.com>

Diff between nhanesA versions 0.6.2 dated 2015-12-28 and 0.6.2.1 dated 2015-12-30

 DESCRIPTION                       |    8 ++++----
 MD5                               |    8 ++++----
 R/nhanes.R                        |   10 +++++-----
 inst/doc/Introducing_nhanesA.html |    4 ++--
 man/browseNHANES.Rd               |   10 +++++-----
 5 files changed, 20 insertions(+), 20 deletions(-)

More information about nhanesA at CRAN
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Package FinCal updated to version 0.6.2 with previous version 0.6 dated 2014-02-24

Title: Time Value of Money, Time Series Analysis and Computational Finance
Description: Package for time value of money calculation, time series analysis and computational finance.
Author: Felix Yanhui Fan <nolanfyh@gmail.com>
Maintainer: Felix Yanhui Fan <nolanfyh@gmail.com>

Diff between FinCal versions 0.6 dated 2014-02-24 and 0.6.2 dated 2015-12-30

 FinCal-0.6.2/FinCal/DESCRIPTION                  |   18 -
 FinCal-0.6.2/FinCal/MD5                          |  253 +++++++++++------------
 FinCal-0.6.2/FinCal/NAMESPACE                    |  145 +++++++------
 FinCal-0.6.2/FinCal/NEWS                         |  239 +++++++++++----------
 FinCal-0.6.2/FinCal/R/EIR.R                      |   80 +++----
 FinCal-0.6.2/FinCal/R/EPS.R                      |   26 +-
 FinCal-0.6.2/FinCal/R/SFRatio.R                  |   24 +-
 FinCal-0.6.2/FinCal/R/Sharpe.ratio.R             |   26 +-
 FinCal-0.6.2/FinCal/R/bdy.R                      |   26 +-
 FinCal-0.6.2/FinCal/R/bdy2mmy.R                  |   24 +-
 FinCal-0.6.2/FinCal/R/candlestickChart.R         |   84 +++----
 FinCal-0.6.2/FinCal/R/cash.ratio.R               |   26 +-
 FinCal-0.6.2/FinCal/R/coefficient.variation.R    |   22 +-
 FinCal-0.6.2/FinCal/R/cogs.R                     |  202 +++++++++---------
 FinCal-0.6.2/FinCal/R/current.ratio.R            |   24 +-
 FinCal-0.6.2/FinCal/R/ddb.R                      |   62 ++---
 FinCal-0.6.2/FinCal/R/debt.ratio.R               |   26 +-
 FinCal-0.6.2/FinCal/R/diluted.EPS.R              |   62 ++---
 FinCal-0.6.2/FinCal/R/discount.rate.R            |   64 +----
 FinCal-0.6.2/FinCal/R/ear.R                      |   34 +--
 FinCal-0.6.2/FinCal/R/ear.continuous.R           |   28 +-
 FinCal-0.6.2/FinCal/R/ear2bey.R                  |   22 +-
 FinCal-0.6.2/FinCal/R/ear2hpr.R                  |   28 +-
 FinCal-0.6.2/FinCal/R/financial.leverage.R       |   26 +-
 FinCal-0.6.2/FinCal/R/fv.R                       |   48 ++--
 FinCal-0.6.2/FinCal/R/fv.annuity.R               |   42 +--
 FinCal-0.6.2/FinCal/R/fv.simple.R                |   30 +-
 FinCal-0.6.2/FinCal/R/fv.uneven.R                |   36 +--
 FinCal-0.6.2/FinCal/R/geometric.mean.R           |   20 -
 FinCal-0.6.2/FinCal/R/get.ohlc.google.R          |   90 ++++----
 FinCal-0.6.2/FinCal/R/get.ohlc.yahoo.R           |   85 +++----
 FinCal-0.6.2/FinCal/R/get.ohlcs.google.R         |  100 ++++-----
 FinCal-0.6.2/FinCal/R/get.ohlcs.yahoo.R          |  103 ++++-----
 FinCal-0.6.2/FinCal/R/gpm.R                      |   22 +-
 FinCal-0.6.2/FinCal/R/harmonic.mean.R            |   16 -
 FinCal-0.6.2/FinCal/R/hpr.R                      |   30 +-
 FinCal-0.6.2/FinCal/R/hpr2bey.R                  |   24 +-
 FinCal-0.6.2/FinCal/R/hpr2ear.R                  |   28 +-
 FinCal-0.6.2/FinCal/R/hpr2mmy.R                  |   26 +-
 FinCal-0.6.2/FinCal/R/irr.R                      |   36 +--
 FinCal-0.6.2/FinCal/R/iss.R                      |   32 +-
 FinCal-0.6.2/FinCal/R/lineChart.R                |   71 +++---
 FinCal-0.6.2/FinCal/R/lineChartMult.R            |   88 ++++----
 FinCal-0.6.2/FinCal/R/lt.d2e.R                   |   26 +-
 FinCal-0.6.2/FinCal/R/mmy2hpr.R                  |   28 +-
 FinCal-0.6.2/FinCal/R/n.period.R                 |   50 ++--
 FinCal-0.6.2/FinCal/R/npm.R                      |   22 +-
 FinCal-0.6.2/FinCal/R/npv.R                      |   32 +-
 FinCal-0.6.2/FinCal/R/pmt.R                      |   52 ++--
 FinCal-0.6.2/FinCal/R/pv.R                       |   54 ++--
 FinCal-0.6.2/FinCal/R/pv.annuity.R               |   40 +--
 FinCal-0.6.2/FinCal/R/pv.perpetuity.R            |   54 ++--
 FinCal-0.6.2/FinCal/R/pv.simple.R                |   30 +-
 FinCal-0.6.2/FinCal/R/pv.uneven.R                |   36 +--
 FinCal-0.6.2/FinCal/R/quick.ratio.R              |   28 +-
 FinCal-0.6.2/FinCal/R/r.continuous.R             |   24 +-
 FinCal-0.6.2/FinCal/R/r.norminal.R               |   30 +-
 FinCal-0.6.2/FinCal/R/r.perpetuity.R             |   24 +-
 FinCal-0.6.2/FinCal/R/sampling.error.R           |   22 +-
 FinCal-0.6.2/FinCal/R/slde.R                     |   24 +-
 FinCal-0.6.2/FinCal/R/total.d2e.R                |   26 +-
 FinCal-0.6.2/FinCal/R/twrr.R                     |   48 ++--
 FinCal-0.6.2/FinCal/R/volumeChart.R              |   43 +--
 FinCal-0.6.2/FinCal/R/was.R                      |   50 ++--
 FinCal-0.6.2/FinCal/R/wpr.R                      |   30 +-
 FinCal-0.6.2/FinCal/README.md                    |only
 FinCal-0.6.2/FinCal/man/EIR.Rd                   |   93 ++++----
 FinCal-0.6.2/FinCal/man/EPS.Rd                   |   53 ++--
 FinCal-0.6.2/FinCal/man/SFRatio.Rd               |   48 ++--
 FinCal-0.6.2/FinCal/man/Sharpe.ratio.Rd          |   52 ++--
 FinCal-0.6.2/FinCal/man/bdy.Rd                   |   50 ++--
 FinCal-0.6.2/FinCal/man/bdy2mmy.Rd               |   44 ++--
 FinCal-0.6.2/FinCal/man/candlestickChart.Rd      |   67 ++----
 FinCal-0.6.2/FinCal/man/cash.ratio.Rd            |   53 ++--
 FinCal-0.6.2/FinCal/man/coefficient.variation.Rd |   44 ++--
 FinCal-0.6.2/FinCal/man/cogs.Rd                  |   68 ++----
 FinCal-0.6.2/FinCal/man/current.ratio.Rd         |   50 ++--
 FinCal-0.6.2/FinCal/man/ddb.Rd                   |   58 ++---
 FinCal-0.6.2/FinCal/man/debt.ratio.Rd            |   53 ++--
 FinCal-0.6.2/FinCal/man/diluted.EPS.Rd           |   96 ++++----
 FinCal-0.6.2/FinCal/man/discount.rate.Rd         |   78 +++----
 FinCal-0.6.2/FinCal/man/ear.Rd                   |   60 ++---
 FinCal-0.6.2/FinCal/man/ear.continuous.Rd        |   49 ++--
 FinCal-0.6.2/FinCal/man/ear2bey.Rd               |   41 +--
 FinCal-0.6.2/FinCal/man/ear2hpr.Rd               |   52 ++--
 FinCal-0.6.2/FinCal/man/financial.leverage.Rd    |   53 ++--
 FinCal-0.6.2/FinCal/man/fv.Rd                    |   79 +++----
 FinCal-0.6.2/FinCal/man/fv.annuity.Rd            |   59 ++---
 FinCal-0.6.2/FinCal/man/fv.simple.Rd             |   53 ++--
 FinCal-0.6.2/FinCal/man/fv.uneven.Rd             |   44 ++--
 FinCal-0.6.2/FinCal/man/geometric.mean.Rd        |   34 +--
 FinCal-0.6.2/FinCal/man/get.ohlc.google.Rd       |   57 ++---
 FinCal-0.6.2/FinCal/man/get.ohlc.yahoo.Rd        |   62 ++---
 FinCal-0.6.2/FinCal/man/get.ohlcs.google.Rd      |   57 ++---
 FinCal-0.6.2/FinCal/man/get.ohlcs.yahoo.Rd       |   60 ++---
 FinCal-0.6.2/FinCal/man/gpm.Rd                   |   46 ++--
 FinCal-0.6.2/FinCal/man/harmonic.mean.Rd         |   34 +--
 FinCal-0.6.2/FinCal/man/hpr.Rd                   |   56 ++---
 FinCal-0.6.2/FinCal/man/hpr2bey.Rd               |   45 ++--
 FinCal-0.6.2/FinCal/man/hpr2ear.Rd               |   52 ++--
 FinCal-0.6.2/FinCal/man/hpr2mmy.Rd               |   48 ++--
 FinCal-0.6.2/FinCal/man/irr.Rd                   |   45 ++--
 FinCal-0.6.2/FinCal/man/iss.Rd                   |   50 ++--
 FinCal-0.6.2/FinCal/man/lineChart.Rd             |   61 ++---
 FinCal-0.6.2/FinCal/man/lineChartMult.Rd         |   69 +++---
 FinCal-0.6.2/FinCal/man/lt.d2e.Rd                |   53 ++--
 FinCal-0.6.2/FinCal/man/mmy2hpr.Rd               |   52 ++--
 FinCal-0.6.2/FinCal/man/n.period.Rd              |   75 +++---
 FinCal-0.6.2/FinCal/man/npm.Rd                   |   45 ++--
 FinCal-0.6.2/FinCal/man/npv.Rd                   |   55 ++---
 FinCal-0.6.2/FinCal/man/pmt.Rd                   |   75 +++---
 FinCal-0.6.2/FinCal/man/pv.Rd                    |   83 +++----
 FinCal-0.6.2/FinCal/man/pv.annuity.Rd            |   59 ++---
 FinCal-0.6.2/FinCal/man/pv.perpetuity.Rd         |   63 ++---
 FinCal-0.6.2/FinCal/man/pv.simple.Rd             |   53 ++--
 FinCal-0.6.2/FinCal/man/pv.uneven.Rd             |   49 ++--
 FinCal-0.6.2/FinCal/man/quick.ratio.Rd           |   57 ++---
 FinCal-0.6.2/FinCal/man/r.continuous.Rd          |   45 ++--
 FinCal-0.6.2/FinCal/man/r.norminal.Rd            |   53 ++--
 FinCal-0.6.2/FinCal/man/r.perpetuity.Rd          |   44 ++--
 FinCal-0.6.2/FinCal/man/sampling.error.Rd        |   38 +--
 FinCal-0.6.2/FinCal/man/slde.Rd                  |   51 ++--
 FinCal-0.6.2/FinCal/man/total.d2e.Rd             |   53 ++--
 FinCal-0.6.2/FinCal/man/twrr.Rd                  |   48 ++--
 FinCal-0.6.2/FinCal/man/volumeChart.Rd           |   60 ++---
 FinCal-0.6.2/FinCal/man/was.Rd                   |   54 ++--
 FinCal-0.6.2/FinCal/man/wpr.Rd                   |   40 +--
 FinCal-0.6/FinCal/R/date.breaks.R                |only
 FinCal-0.6/FinCal/man/date.breaks.Rd             |only
 129 files changed, 3331 insertions(+), 3318 deletions(-)

More information about FinCal at CRAN
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New package cricketr with initial version 0.0.11
Package: cricketr
Type: Package
Title: Analyze Cricketers Based on ESPN Cricinfo Statsguru
Description: Tools for analyzing performances of cricketers based on stats in ESPN Cricinfo Statsguru. The toolset can be used for analysis of Tests,ODIs and Twenty20 matches of both batsmen and bowlers.
Version: 0.0.11
Date: 2015-12-26
Author: Tinniam V Ganesh
Maintainer: Tinniam V Ganesh <tvganesh.85@gmail.com>
License: MIT + file LICENSE
Depends: R (>= 3.1.2)
Imports: dplyr, plotrix, ggplot2, scatterplot3d, forecast, lubridate, XML, graphics, grDevices, stats, utils
URL: https://github.com/tvganesh/cricketr
BugReports: https://github.com/tvganesh/cricketr/issues
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2015-12-30 04:09:31 UTC; Ganesh
Repository: CRAN
Date/Publication: 2015-12-30 08:45:30

More information about cricketr at CRAN
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