Title: Interface to the iDigBio Data API
Description: An interface to iDigBio's search API that allows downloading
specimen records. Searches are returned as a data.frame. Other functions
such as the metadata end points return lists of information. iDigBio is a US
project focused on digitizing and serving museum specimen collections on the
web. See <https://www.idigbio.org> for information on iDigBio.
Author: Francois Michonneau [aut, cph],
Matthew Collins [aut, cre],
Scott Chamberlain [ctb]
Maintainer: Matthew Collins <mcollins@acis.ufl.edu>
Diff between ridigbio versions 0.3.1 dated 2015-08-31 and 0.3.2 dated 2016-01-04
DESCRIPTION | 8 +- LICENSE | 2 MD5 | 20 +++--- R/ridigbio.R | 6 + man/ridigbio.Rd | 8 ++ tests/testthat/test-base.R | 39 +++++++----- tests/testthat/test-idig_count_media.R | 34 +++++++--- tests/testthat/test-idig_count_records.R | 34 ++++++---- tests/testthat/test-idig_meta_fields.R | 80 ++++++++++++++++--------- tests/testthat/test-idig_search_media.R | 69 +++++++++++++--------- tests/testthat/test-idig_search_records.R | 94 +++++++++++++++++------------- 11 files changed, 244 insertions(+), 150 deletions(-)
Title: Functional Programming Tools
Description: Make your pure functions purr with the 'purrr' package. This
package completes R's functional programming tools with missing features
present in other programming languages.
Author: Hadley Wickham [aut, cre],
Lionel Henry [ctb],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between purrr versions 0.1.0 dated 2015-09-28 and 0.2.0 dated 2016-01-04
purrr-0.1.0/purrr/R/RcppExports.R |only purrr-0.1.0/purrr/R/zip.R |only purrr-0.1.0/purrr/man/cross2.Rd |only purrr-0.1.0/purrr/man/map_call.Rd |only purrr-0.1.0/purrr/man/zip_n.Rd |only purrr-0.1.0/purrr/src/RcppExports.cpp |only purrr-0.1.0/purrr/tests/testthat/test-zip.R |only purrr-0.2.0/purrr/DESCRIPTION | 13 purrr-0.2.0/purrr/MD5 | 177 +++++++----- purrr-0.2.0/purrr/NAMESPACE | 59 +++- purrr-0.2.0/purrr/R/along.R |only purrr-0.2.0/purrr/R/arrays.R | 6 purrr-0.2.0/purrr/R/at-depth.R | 7 purrr-0.2.0/purrr/R/coercion.R | 29 + purrr-0.2.0/purrr/R/composition.R | 41 +- purrr-0.2.0/purrr/R/cross.R | 93 +++--- purrr-0.2.0/purrr/R/dmap.R |only purrr-0.2.0/purrr/R/every-some.R | 4 purrr-0.2.0/purrr/R/flatten.R | 75 +++-- purrr-0.2.0/purrr/R/invoke.R | 142 ++++++--- purrr-0.2.0/purrr/R/keep.R | 4 purrr-0.2.0/purrr/R/lmap.R | 24 - purrr-0.2.0/purrr/R/map-vector.R | 36 -- purrr-0.2.0/purrr/R/map.R | 262 ++++++++++++------ purrr-0.2.0/purrr/R/negate.R | 2 purrr-0.2.0/purrr/R/objects.R | 14 purrr-0.2.0/purrr/R/output.R |only purrr-0.2.0/purrr/R/partial.R | 2 purrr-0.2.0/purrr/R/reduce.R | 53 +++ purrr-0.2.0/purrr/R/rerun.R | 12 purrr-0.2.0/purrr/R/rows.R | 196 +++++++++---- purrr-0.2.0/purrr/R/set_names.R |only purrr-0.2.0/purrr/R/split_by.R | 6 purrr-0.2.0/purrr/R/transpose.R |only purrr-0.2.0/purrr/R/utils.R | 108 +++++-- purrr-0.2.0/purrr/README.md | 21 - purrr-0.2.0/purrr/man/accumulate.Rd |only purrr-0.2.0/purrr/man/along.Rd |only purrr-0.2.0/purrr/man/array-coercion.Rd | 8 purrr-0.2.0/purrr/man/as_function.Rd |only purrr-0.2.0/purrr/man/as_vector.Rd | 14 purrr-0.2.0/purrr/man/at_depth.Rd | 25 - purrr-0.2.0/purrr/man/bare-type-predicates.Rd | 6 purrr-0.2.0/purrr/man/by_row.Rd | 83 +++-- purrr-0.2.0/purrr/man/by_slice.Rd | 44 +-- purrr-0.2.0/purrr/man/compose.Rd | 2 purrr-0.2.0/purrr/man/conditional-map.Rd | 37 +- purrr-0.2.0/purrr/man/contains.Rd | 4 purrr-0.2.0/purrr/man/cross_n.Rd |only purrr-0.2.0/purrr/man/detect.Rd | 4 purrr-0.2.0/purrr/man/dmap.Rd |only purrr-0.2.0/purrr/man/every.Rd | 4 purrr-0.2.0/purrr/man/flatmap.Rd | 49 --- purrr-0.2.0/purrr/man/flatten.Rd | 58 ++- purrr-0.2.0/purrr/man/get-attr.Rd |only purrr-0.2.0/purrr/man/head_while.Rd | 4 purrr-0.2.0/purrr/man/invoke.Rd | 92 +++++- purrr-0.2.0/purrr/man/is_empty.Rd | 2 purrr-0.2.0/purrr/man/is_formula.Rd | 2 purrr-0.2.0/purrr/man/keep.Rd | 2 purrr-0.2.0/purrr/man/lift.Rd | 42 +- purrr-0.2.0/purrr/man/lmap.Rd | 22 - purrr-0.2.0/purrr/man/map.Rd | 61 ++-- purrr-0.2.0/purrr/man/map2.Rd | 91 ++++-- purrr-0.2.0/purrr/man/negate.Rd | 4 purrr-0.2.0/purrr/man/null-default.Rd |only purrr-0.2.0/purrr/man/partial.Rd | 2 purrr-0.2.0/purrr/man/pipe.Rd | 2 purrr-0.2.0/purrr/man/prepend.Rd | 2 purrr-0.2.0/purrr/man/rbernoulli.Rd | 2 purrr-0.2.0/purrr/man/rdunif.Rd | 4 purrr-0.2.0/purrr/man/reduce.Rd | 4 purrr-0.2.0/purrr/man/rerun.Rd | 2 purrr-0.2.0/purrr/man/safely.Rd |only purrr-0.2.0/purrr/man/scalar-type-predicates.Rd | 4 purrr-0.2.0/purrr/man/set_names.Rd |only purrr-0.2.0/purrr/man/slice_rows.Rd | 2 purrr-0.2.0/purrr/man/splice.Rd | 2 purrr-0.2.0/purrr/man/split_by.Rd | 23 - purrr-0.2.0/purrr/man/transpose.Rd |only purrr-0.2.0/purrr/man/type-predicates.Rd | 7 purrr-0.2.0/purrr/man/update_list.Rd | 6 purrr-0.2.0/purrr/man/when.Rd | 4 purrr-0.2.0/purrr/src/fast-copy.cpp | 167 +++++------ purrr-0.2.0/purrr/src/fast-copy.h | 8 purrr-0.2.0/purrr/src/flatten.c |only purrr-0.2.0/purrr/src/map.c |only purrr-0.2.0/purrr/src/map.h |only purrr-0.2.0/purrr/src/rows-data.cpp |only purrr-0.2.0/purrr/src/rows-data.h |only purrr-0.2.0/purrr/src/rows-formatter.cpp |only purrr-0.2.0/purrr/src/rows-formatter.h |only purrr-0.2.0/purrr/src/rows.cpp | 276 ++++--------------- purrr-0.2.0/purrr/src/transpose.c |only purrr-0.2.0/purrr/src/utils.cpp | 63 ++++ purrr-0.2.0/purrr/src/utils.h | 15 + purrr-0.2.0/purrr/src/vector.c |only purrr-0.2.0/purrr/src/vector.h |only purrr-0.2.0/purrr/tests/testthat/test-dmap.R |only purrr-0.2.0/purrr/tests/testthat/test-flatten.R |only purrr-0.2.0/purrr/tests/testthat/test-invoke.R |only purrr-0.2.0/purrr/tests/testthat/test-map.R | 55 +-- purrr-0.2.0/purrr/tests/testthat/test-map2.R |only purrr-0.2.0/purrr/tests/testthat/test-map_n.R |only purrr-0.2.0/purrr/tests/testthat/test-output.R |only purrr-0.2.0/purrr/tests/testthat/test-predicates.R |only purrr-0.2.0/purrr/tests/testthat/test-recycle_args.R |only purrr-0.2.0/purrr/tests/testthat/test-rerun.R |only purrr-0.2.0/purrr/tests/testthat/test-rows.R | 241 +++++++++++++++- purrr-0.2.0/purrr/tests/testthat/test-transpose.R |only purrr-0.2.0/purrr/tests/testthat/test-update-list.R |only 111 files changed, 1825 insertions(+), 1112 deletions(-)
Title: Nomograms for High-Dimensional Cox Models
Description: Build nomograms for high-dimensional Cox models, with support for
reproducible model validation, calibration and comparison.
Author: Miaozhu Li <miaozhu.li@duke.edu>, Nan Xiao <nanx@uchicago.edu>
Maintainer: Nan Xiao <nanx@uchicago.edu>
Diff between hdnom versions 2.1 dated 2015-10-27 and 3.0 dated 2016-01-04
hdnom-2.1/hdnom/R/hdnom.calibrate.R |only hdnom-2.1/hdnom/R/hdnom.models.R |only hdnom-2.1/hdnom/R/hdnom.nomogram.R |only hdnom-2.1/hdnom/R/hdnom.validate.R |only hdnom-3.0/hdnom/DESCRIPTION | 15 hdnom-3.0/hdnom/MD5 | 147 ++- hdnom-3.0/hdnom/NAMESPACE | 64 + hdnom-3.0/hdnom/NEWS.md | 38 hdnom-3.0/hdnom/R/1.hdnom.models.R |only hdnom-3.0/hdnom/R/10.hdnom.compare.calibrate.R |only hdnom-3.0/hdnom/R/2.hdnom.nomogram.R |only hdnom-3.0/hdnom/R/3.hdnom.validate.R |only hdnom-3.0/hdnom/R/4.hdnom.calibrate.R |only hdnom-3.0/hdnom/R/5.hdnom.external.validate.R |only hdnom-3.0/hdnom/R/6.hdnom.external.calibrate.R |only hdnom-3.0/hdnom/R/7.hdnom.kmplot.R |only hdnom-3.0/hdnom/R/8.hdnom.logrank.R |only hdnom-3.0/hdnom/R/9.hdnom.compare.validate.R |only hdnom-3.0/hdnom/R/hdnom-package.R | 7 hdnom-3.0/hdnom/README.md | 10 hdnom-3.0/hdnom/TODO | 9 hdnom-3.0/hdnom/build/vignette.rds |binary hdnom-3.0/hdnom/inst/doc/hdnom.R | 104 +- hdnom-3.0/hdnom/inst/doc/hdnom.Rmd | 373 ++++++-- hdnom-3.0/hdnom/inst/doc/hdnom.html | 451 ++++++++-- hdnom-3.0/hdnom/man/glmnet.basesurv.Rd | 6 hdnom-3.0/hdnom/man/glmnet.calibrate.internal.pred.Rd | 12 hdnom-3.0/hdnom/man/glmnet.external.calibrate.internal.pred.Rd |only hdnom-3.0/hdnom/man/glmnet.external.validate.internal.Rd |only hdnom-3.0/hdnom/man/glmnet.survcurve.Rd | 6 hdnom-3.0/hdnom/man/glmnet.tune.alpha.Rd | 4 hdnom-3.0/hdnom/man/glmnet.validate.internal.Rd | 8 hdnom-3.0/hdnom/man/hdcox.aenet.Rd | 15 hdnom-3.0/hdnom/man/hdcox.alasso.Rd | 15 hdnom-3.0/hdnom/man/hdcox.enet.Rd | 11 hdnom-3.0/hdnom/man/hdcox.flasso.Rd | 15 hdnom-3.0/hdnom/man/hdcox.lasso.Rd | 11 hdnom-3.0/hdnom/man/hdcox.mcp.Rd | 9 hdnom-3.0/hdnom/man/hdcox.mnet.Rd | 9 hdnom-3.0/hdnom/man/hdcox.scad.Rd | 9 hdnom-3.0/hdnom/man/hdcox.snet.Rd | 9 hdnom-3.0/hdnom/man/hdnom-package.Rd | 9 hdnom-3.0/hdnom/man/hdnom.calibrate.Rd | 45 hdnom-3.0/hdnom/man/hdnom.calibrate.internal.true.Rd | 8 hdnom-3.0/hdnom/man/hdnom.compare.calibrate.Rd |only hdnom-3.0/hdnom/man/hdnom.compare.validate.Rd |only hdnom-3.0/hdnom/man/hdnom.external.calibrate.Rd |only hdnom-3.0/hdnom/man/hdnom.external.calibrate.internal.true.Rd |only hdnom-3.0/hdnom/man/hdnom.external.validate.Rd |only hdnom-3.0/hdnom/man/hdnom.kmplot.Rd |only hdnom-3.0/hdnom/man/hdnom.logrank.Rd |only hdnom-3.0/hdnom/man/hdnom.nomogram.Rd | 11 hdnom-3.0/hdnom/man/hdnom.validate.Rd | 50 - hdnom-3.0/hdnom/man/hdnom.varinfo.Rd |only hdnom-3.0/hdnom/man/kmplot.Rd |only hdnom-3.0/hdnom/man/ncvreg.basesurv.Rd | 6 hdnom-3.0/hdnom/man/ncvreg.calibrate.internal.pred.Rd | 12 hdnom-3.0/hdnom/man/ncvreg.external.calibrate.internal.pred.Rd |only hdnom-3.0/hdnom/man/ncvreg.external.validate.internal.Rd |only hdnom-3.0/hdnom/man/ncvreg.survcurve.Rd | 6 hdnom-3.0/hdnom/man/ncvreg.tune.gamma.Rd | 4 hdnom-3.0/hdnom/man/ncvreg.tune.gamma.alpha.Rd | 4 hdnom-3.0/hdnom/man/ncvreg.validate.internal.Rd | 8 hdnom-3.0/hdnom/man/penalized.basesurv.Rd | 6 hdnom-3.0/hdnom/man/penalized.calibrate.internal.pred.Rd | 10 hdnom-3.0/hdnom/man/penalized.external.calibrate.internal.pred.Rd |only hdnom-3.0/hdnom/man/penalized.external.validate.internal.Rd |only hdnom-3.0/hdnom/man/penalized.survcurve.Rd | 6 hdnom-3.0/hdnom/man/penalized.validate.internal.Rd | 8 hdnom-3.0/hdnom/man/plot.hdnom.calibrate.Rd | 8 hdnom-3.0/hdnom/man/plot.hdnom.compare.calibrate.Rd |only hdnom-3.0/hdnom/man/plot.hdnom.compare.validate.Rd |only hdnom-3.0/hdnom/man/plot.hdnom.external.calibrate.Rd |only hdnom-3.0/hdnom/man/plot.hdnom.external.validate.Rd |only hdnom-3.0/hdnom/man/plot.hdnom.nomogram.Rd | 8 hdnom-3.0/hdnom/man/plot.hdnom.validate.Rd | 21 hdnom-3.0/hdnom/man/predict.hdcox.model.Rd |only hdnom-3.0/hdnom/man/print.hdcox.model.Rd |only hdnom-3.0/hdnom/man/print.hdnom.calibrate.Rd | 8 hdnom-3.0/hdnom/man/print.hdnom.compare.calibrate.Rd |only hdnom-3.0/hdnom/man/print.hdnom.compare.validate.Rd |only hdnom-3.0/hdnom/man/print.hdnom.external.calibrate.Rd |only hdnom-3.0/hdnom/man/print.hdnom.external.validate.Rd |only hdnom-3.0/hdnom/man/print.hdnom.nomogram.Rd | 8 hdnom-3.0/hdnom/man/print.hdnom.validate.Rd | 8 hdnom-3.0/hdnom/man/smart.Rd | 2 hdnom-3.0/hdnom/man/smarto.Rd | 2 hdnom-3.0/hdnom/man/summary.hdnom.calibrate.Rd | 8 hdnom-3.0/hdnom/man/summary.hdnom.compare.calibrate.Rd |only hdnom-3.0/hdnom/man/summary.hdnom.compare.validate.Rd |only hdnom-3.0/hdnom/man/summary.hdnom.external.calibrate.Rd |only hdnom-3.0/hdnom/man/summary.hdnom.external.validate.Rd |only hdnom-3.0/hdnom/man/summary.hdnom.validate.Rd | 8 hdnom-3.0/hdnom/vignettes/aenetfit.rds |binary hdnom-3.0/hdnom/vignettes/hdnom.Rmd | 373 ++++++-- hdnom-3.0/hdnom/vignettes/hdnom.bib | 10 96 files changed, 1431 insertions(+), 583 deletions(-)
Title: Testing Goodness-of-Fit with the Kernel Density Estimator
Description: Tests of goodness-of-fit based on a kernel smoothing of the data.
Author: Jose M. Pavia
Maintainer: Jose M. Pavia <Jose.M.Pavia@uv.es>
Diff between GoFKernel versions 2.0-6 dated 2015-08-04 and 2.1-0 dated 2016-01-04
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/GoFKernel.r | 40 +++++++++++++++++++++++++++++----------- man/density.reflected.Rd | 8 +++++--- 4 files changed, 41 insertions(+), 21 deletions(-)
Title: Compare Groups, Analytically and Graphically
Description: Comprehensive data analysis software, and the name "cg" stands for "compare groups." Its genesis and evolution are driven by common needs to compare administrations, conditions, etc. in medicine research and development. The current version provides comparisons of unpaired samples, i.e. a linear model with one factor of at least two levels. It also provides comparisons of two paired samples. Good data graphs, modern statistical methods, and useful displays of results are emphasized.
Author: Bill Pikounis [aut, cre, cph], John Oleynick [aut], Eva Ye [ctb]
Maintainer: Bill Pikounis <cg@billpikounis.net>
Diff between cg versions 1.0-2 dated 2014-12-31 and 1.0-3 dated 2016-01-04
DESCRIPTION | 18 MD5 | 24 NAMESPACE | 34 R/p00ReadInOneFactorData.R | 5 R/p02DescriptiveOneFactorData.R | 2326 +++++++++++++++++------------------ R/p03FormalOneFactorData.R | 2 R/p05SampleSizeOneFactorData.R | 2 R/utilities.R | 11 R/version.R | 2 inst/NEWS | 5 man/cg-package.Rd | 14 man/prepare.Rd | 16 man/prepareCGPairedDifferenceData.Rd | 7 13 files changed, 1254 insertions(+), 1212 deletions(-)
Title: Estimation of Temporal Ordering of Cancer Abnormalities
Description: This is a package with functions for timing copy number changes using estimates of mutational allele frequency from resequencing of tumor samples.
Author: Elizabeth Purdom
Maintainer: Elizabeth Purdom <epurdom@stat.berkeley.edu>
Diff between cancerTiming versions 3.0.0 dated 2015-04-13 and 3.1.3 dated 2016-01-04
DESCRIPTION | 10 +++--- MD5 | 12 ++++--- NAMESPACE | 7 +++- R/eventTimingList.R | 74 ++++++++++++++++++++++++++------------------- R/mut2seg.R |only man/eventTimingOverList.Rd | 21 ++++++++++++ man/labelSeg.Rd | 2 - man/mut2Seg.Rd |only 8 files changed, 83 insertions(+), 43 deletions(-)
Title: Coarse Approximation Linear Function
Description: Contains a greedy algorithm for coarse approximation linear function.
Author: Stephanie Lane [aut, cre], Clark Jeffries [aut], Diana Perkins [aut]
Maintainer: Stephanie Lane <slane@unc.edu>
Diff between CALF versions 0.1 dated 2015-11-15 and 0.1.1 dated 2016-01-04
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NAMESPACE | 2 +- R/CALF.R | 4 ++-- man/CALF-package.Rd | 2 +- man/CaseControl.Rd | 2 +- man/calf.Rd | 2 +- 7 files changed, 16 insertions(+), 16 deletions(-)
Title: 3D Visualization Using OpenGL
Description: Provides medium to high level functions for 3D interactive graphics, including
functions modelled on base graphics (plot3d(), etc.) as well as functions for
constructing representations of geometric objects (cube3d(), etc.). Output
may be on screen using OpenGL, or to various standard 3D file formats including
WebGL, PLY, OBJ, STL as well as 2D image formats, including PNG, Postscript, SVG, PGF.
Author: Daniel Adler <dadler@uni-goettingen.de>, Duncan Murdoch <murdoch@stats.uwo.ca>, and others (see README)
Maintainer: Duncan Murdoch <murdoch@stats.uwo.ca>
Diff between rgl versions 0.95.1435 dated 2015-12-28 and 0.95.1441 dated 2016-01-04
DESCRIPTION | 10 +++--- MD5 | 24 ++++++++-------- R/device.R | 6 ++-- inst/NEWS | 8 ++++- inst/doc/WebGL.html | 77 +++++++++++++++++++++++++++------------------------- inst/doc/rgl.html | 13 +++++--- src/Device.h | 4 +- src/api.cpp | 4 +- src/api.h | 2 - src/device.cpp | 4 +- src/pixmap.cpp | 9 ++++-- src/rglview.cpp | 58 ++++++++++++++++++++++++++------------- src/rglview.h | 4 +- 13 files changed, 129 insertions(+), 94 deletions(-)
Title: A Very Basic Templating Engine
Description: Replace parameters in strings and/or text files with specified
values.
Author: Bart Smeets
Maintainer: Bart Smeets <bartsmeets86@gmail.com>
Diff between infuser versions 0.2.1 dated 2015-09-30 and 0.2.2 dated 2016-01-04
DESCRIPTION | 12 +++++++----- MD5 | 21 +++++++++++---------- NAMESPACE | 2 +- R/core.R | 31 +++++++++++++++++++------------ man/infuse.Rd | 16 ++++++++-------- man/print.infuse.Rd | 2 +- man/print_requested_params.Rd | 2 +- man/read_template.Rd | 2 +- man/trim.Rd | 2 +- man/variables_requested.Rd | 2 +- tests/testthat/test_core_functionality.R | 17 +++++++++++++++++ vignettes |only 12 files changed, 68 insertions(+), 41 deletions(-)
Title: Multiple Hot-Deck Imputation
Description: Performs multiple hot-deck imputation of categorical and continuous variables in a data frame.
Author: Skyler Cranmer, Jeff Gill, Natalie Jackson, Andreas Murr, Dave Armstrong
Maintainer: Dave Armstrong <dave@quantoid.net>
Diff between hot.deck versions 1.0 dated 2014-09-15 and 1.1 dated 2016-01-04
DESCRIPTION | 10 +++--- MD5 | 24 ++++++++-------- NAMESPACE | 1 R/hd2amelia.R |only R/hot.deck.R | 14 ++++----- R/scaleContinuous.R | 55 +++++++++++++++++++++++++------------- build/vignette.rds |binary inst/doc/Using_Hot_Deck_Data.R | 22 +++++++++------ inst/doc/Using_Hot_Deck_Data.Rnw | 15 ++++++---- inst/doc/Using_Hot_Deck_Data.pdf |binary man/hd2amelia.Rd |only man/hot.deck-package.Rd | 8 ++--- man/hot.deck.Rd | 2 - vignettes/Using_Hot_Deck_Data.Rnw | 15 ++++++---- 14 files changed, 102 insertions(+), 64 deletions(-)
Title: Dot-and-Whisker Plots of Regression Results
Description: Quick and easy dot-and-whisker plots of regression results.
Author: Frederick Solt <frederick-solt@uiowa.edu>, Yue Hu <yue-hu-1@uiowa.edu>
Maintainer: Yue Hu <yue-hu-1@uiowa.edu>
Diff between dotwhisker versions 0.2.0.2 dated 2015-12-23 and 0.2.0.3 dated 2016-01-04
DESCRIPTION | 6 MD5 | 8 R/dwplot.R | 12 + man/dwplot.Rd | 4 vignettes/kl2007_examples.Rmd | 361 +++++++++++++++++++++++++++++++++++++++++- 5 files changed, 372 insertions(+), 19 deletions(-)
Title: Gradient Boosting
Description: Functional gradient descent algorithm for a variety of convex and nonconvex loss functions, for both classical and robust regression and classification problems. HingeBoost is implemented for binary and multi-class classification, with unequal misclassification costs for binary case. The algorithm can fit linear and nonlinear classifiers.
Author: Zhu Wang [aut, cre],
Torsten Hothorn [ctb]
Maintainer: Zhu Wang <zwang@connecticutchildrens.org>
Diff between bst versions 0.3-11 dated 2015-12-19 and 0.3-12 dated 2016-01-04
DESCRIPTION | 11 MD5 | 40 + NEWS | 10 R/mbst.R | 2 R/mhingebst.R | 984 ++++++++++++++++++++--------------------- R/rmbst.R | 3 R/simdata.R | 6 build/vignette.rds |binary inst/doc/khan.R | 170 +++++-- inst/doc/khan.Rnw | 138 +++++ inst/doc/khan.pdf |binary inst/doc/mcl.R |only inst/doc/mcl.Rnw |only inst/doc/mcl.pdf |only inst/doc/pros.pdf |binary inst/doc/static_khan.pdf |only inst/doc/static_khan.pdf.asis |only inst/doc/static_mcl.pdf |only inst/doc/static_mcl.pdf.asis |only man/ex1data.Rd | 9 man/mhingebst.Rd | 2 man/rmbst.Rd | 5 vignettes/khan.Rnw | 138 +++++ vignettes/mcl.Rnw |only vignettes/static_khan.pdf.asis |only vignettes/static_mcl.pdf.asis |only 26 files changed, 921 insertions(+), 597 deletions(-)
Title: Basic Unix Process Control
Description: Wrappers for fork()/waitpid() meant to allow R users to quickly
and easily fork child processes and wait for them to finish.
Author: Daniel Robertson
Maintainer: Daniel Robertson <danlrobertson89@gmail.com>
Diff between bfork versions 0.1.1 dated 2016-01-04 and 0.1.2 dated 2016-01-04
bfork-0.1.1/bfork/configure |only bfork-0.1.1/bfork/configure.ac |only bfork-0.1.1/bfork/man/waitall.Rd |only bfork-0.1.1/bfork/src/Makevars.in |only bfork-0.1.1/bfork/src/config.h.in |only bfork-0.1.2/bfork/DESCRIPTION | 10 +++--- bfork-0.1.2/bfork/MD5 | 26 ++++++--------- bfork-0.1.2/bfork/NAMESPACE | 2 - bfork-0.1.2/bfork/R/bfork.R | 4 +- bfork-0.1.2/bfork/README.md | 8 ++-- bfork-0.1.2/bfork/cleanup | 2 - bfork-0.1.2/bfork/man/bfork-package.Rd | 4 +- bfork-0.1.2/bfork/man/fork.Rd | 4 +- bfork-0.1.2/bfork/man/wait.Rd | 45 ++++++++++++++++----------- bfork-0.1.2/bfork/man/waitpid.Rd |only bfork-0.1.2/bfork/src/fork.c | 1 bfork-0.1.2/bfork/tests/testthat/test-fork.R | 2 - 17 files changed, 57 insertions(+), 51 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-05-14 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-03-03 2.1-3
2012-09-28 2.1-2
2012-08-23 2.1-1
2012-08-15 2.0
2012-06-30 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-08-07 0.0.2
2015-07-22 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-09-23 0.7-1
Title: Just Let it Simmer
Description: Discrete-Event Simulation (DES) package for R.
Author: Bart Smeets [aut],
Iñaki Ucar [aut, cre]
Maintainer: Iñaki Ucar <i.ucar86@gmail.com>
Diff between simmer versions 3.1.1 dated 2015-12-16 and 3.1.2 dated 2016-01-04
DESCRIPTION | 6 - LICENSE | 2 MD5 | 73 +++++++++++----------- R/RcppExports.R | 4 + R/plot.R | 47 +++----------- R/simulator.R | 56 +++++++++++------ R/utils.R | 13 +++- R/wrap.R | 7 +- TODO | 4 - build/vignette.rds |binary inst/doc/introduction.R | 4 - inst/doc/introduction.Rmd | 4 - inst/doc/introduction.html | 75 ++++++++++++----------- inst/doc/terminology.html | 4 - inst/doc/trajectories.html | 50 +++++++-------- man/get_mon_arrivals.Rd | 6 + man/get_mon_attributes.Rd | 2 man/get_mon_resources.Rd | 2 src/RcppExports.cpp | 12 +++ src/activity.cpp | 2 src/activity.h | 18 +---- src/entity.cpp | 25 ++++++- src/entity.h | 96 +++++++++++++++++++----------- src/simmer_rcpp.cpp | 52 +++++++++++----- src/simulator.h | 44 ++++++------- src/stats.h | 75 +++++++++-------------- tests/testthat.R | 3 tests/testthat/test-convenience-funcs.R |only tests/testthat/test-plot.R | 4 - tests/testthat/test-simmer-generator.R | 28 -------- tests/testthat/test-simmer-resource.R | 21 +++--- tests/testthat/test-simmer.R | 38 ++++++----- tests/testthat/test-simulation-1.R | 16 +++-- tests/testthat/test-trajectory-rollback.R | 18 +++-- tests/testthat/test-trajectory-timeout.R | 12 +++ tests/testthat/test-trajectory.R | 40 ++++++------ tests/testthat/test-wrap.R | 2 vignettes/introduction.Rmd | 4 - 38 files changed, 466 insertions(+), 403 deletions(-)
Title: Niche Estimation
Diff between EnvNicheR versions 1.0 dated 2013-07-09 and 1.3 dated 2016-01-04
Description: A plot overlying the niche of multiple species is obtained, to determine the niche conditions which favor a higher species richness, to create boxplots with the range of environmental variables of the species, to obtain a list of species in an area of the niche selected by the user and to estimate niche overlap among the species. It uses an output file of the software ModestR, which is available at the web site www.ipez.es/ModestR.
Author: Cástor Guisande González
Maintainer: Cástor Guisande González
EnvNicheR-1.0/EnvNicheR/EnvNicheR-Ex.R |only
EnvNicheR-1.0/EnvNicheR/R/niche.R |only
EnvNicheR-1.0/EnvNicheR/man/niche.Rd |only
EnvNicheR-1.3/EnvNicheR/DESCRIPTION | 19 +++++++--------
EnvNicheR-1.3/EnvNicheR/MD5 | 19 +++++++++------
EnvNicheR-1.3/EnvNicheR/NAMESPACE | 16 +++++++++---
EnvNicheR-1.3/EnvNicheR/R/Niche.R |only
EnvNicheR-1.3/EnvNicheR/R/NicheOverlap.R |only
EnvNicheR-1.3/EnvNicheR/R/OverlapTaxa.R |only
EnvNicheR-1.3/EnvNicheR/data/Carnivores.RData |binary
EnvNicheR-1.3/EnvNicheR/data/Polar.coordinates.RData |only
EnvNicheR-1.3/EnvNicheR/man/Carnivores.Rd | 24 +++++++++----------
EnvNicheR-1.3/EnvNicheR/man/Niche.Rd |only
EnvNicheR-1.3/EnvNicheR/man/NicheOverlap.Rd |only
EnvNicheR-1.3/EnvNicheR/man/OverlapTaxa.Rd |only
EnvNicheR-1.3/EnvNicheR/man/Polar.coordinates.Rd |only
16 files changed, 45 insertions(+), 33 deletions(-)
Title: Automated Runs and Evaluations of Ecological Niche Models
Description: Automatically partitions data into evaluation bins, executes ecological niche models across a range of settings, and calculates a variety of evaluation statistics. Current version only implements ENMs with Maxent (Phillips et al. 2006).
Author: Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Uriarte and Robert P. Anderson
Maintainer: Robert Muscarella <bob.muscarella@gmail.com>
Diff between ENMeval versions 0.2.0 dated 2015-09-11 and 0.2.1 dated 2016-01-04
DESCRIPTION | 13 ++++++------- MD5 | 8 ++++---- NAMESPACE | 3 ++- NEWS | 4 ++++ R/tuning.R | 6 +++--- 5 files changed, 19 insertions(+), 15 deletions(-)
Title: Statistical Tests for Cryptographic Randomness
Description: Performs cryptographic randomness tests on a sequence of random integers or bits. Included tests are greatest common divisor, birthday spacings, book stack, adaptive chi-square, topological binary, and three random walk tests. Tests except greatest common divisor and birthday spacings are not covered by standard test suites. In addition to the chi-square goodness-of-fit test, results of Anderson-Darling, Kolmogorov-Smirnov, and Jarque-Bera tests are also generated by some of the cryptographic randomness tests.
Author: Haydar Demirhan
Maintainer: Haydar Demirhan <haydarde@hacettepe.edu.tr>
Diff between CryptRndTest versions 1.1.5 dated 2015-09-01 and 1.2.1 dated 2016-01-04
CryptRndTest-1.1.5/CryptRndTest/R/CryptRndTest-internal.R |only CryptRndTest-1.2.1/CryptRndTest/DESCRIPTION | 10 CryptRndTest-1.2.1/CryptRndTest/MD5 | 52 + CryptRndTest-1.2.1/CryptRndTest/NAMESPACE | 46 + CryptRndTest-1.2.1/CryptRndTest/R/GCD.test.R | 145 ---- CryptRndTest-1.2.1/CryptRndTest/R/GCD.test.default.R |only CryptRndTest-1.2.1/CryptRndTest/R/GCD.test.main.R |only CryptRndTest-1.2.1/CryptRndTest/R/Random.walk.G.R | 2 CryptRndTest-1.2.1/CryptRndTest/R/adaptive.chi.square.R | 55 - CryptRndTest-1.2.1/CryptRndTest/R/adaptive.chi.square.default.R |only CryptRndTest-1.2.1/CryptRndTest/R/adaptive.chi.square.main.R |only CryptRndTest-1.2.1/CryptRndTest/R/birthday.spacings.R | 11 CryptRndTest-1.2.1/CryptRndTest/R/birthday.spacings.default.R |only CryptRndTest-1.2.1/CryptRndTest/R/birthday.spacings.main.R |only CryptRndTest-1.2.1/CryptRndTest/R/book.stack.R | 59 - CryptRndTest-1.2.1/CryptRndTest/R/book.stack.default.R |only CryptRndTest-1.2.1/CryptRndTest/R/book.stack.main.R |only CryptRndTest-1.2.1/CryptRndTest/R/check.R |only CryptRndTest-1.2.1/CryptRndTest/R/dogumGunuAraliklari.R | 2 CryptRndTest-1.2.1/CryptRndTest/R/print.CryptRndTest.R |only CryptRndTest-1.2.1/CryptRndTest/R/random.walk.tests.R | 60 -- CryptRndTest-1.2.1/CryptRndTest/R/random.walk.tests.default.R |only CryptRndTest-1.2.1/CryptRndTest/R/random.walk.tests.main.R |only CryptRndTest-1.2.1/CryptRndTest/R/topological.binary.R | 23 CryptRndTest-1.2.1/CryptRndTest/R/topological.binary.default.R |only CryptRndTest-1.2.1/CryptRndTest/R/topological.binary.main.R |only CryptRndTest-1.2.1/CryptRndTest/man/CryptRndTest-internal.Rd | 13 CryptRndTest-1.2.1/CryptRndTest/man/CryptRndTest-package.Rd | 200 +++--- CryptRndTest-1.2.1/CryptRndTest/man/GCD.test.Rd | 235 +++---- CryptRndTest-1.2.1/CryptRndTest/man/adaptive.chi.square.Rd | 154 ++--- CryptRndTest-1.2.1/CryptRndTest/man/birthday.spacings.Rd | 196 +++--- CryptRndTest-1.2.1/CryptRndTest/man/book.stack.Rd | 148 ++-- CryptRndTest-1.2.1/CryptRndTest/man/print.CryptRndTest.Rd |only CryptRndTest-1.2.1/CryptRndTest/man/random.walk.tests.Rd | 300 +++++----- CryptRndTest-1.2.1/CryptRndTest/man/topological.binary.Rd | 128 ++-- 35 files changed, 784 insertions(+), 1055 deletions(-)
Title: Tools for Analysis, Design, and Operation of Water Supply
Storages
Description: Measure single-storage water supply system performance using resilience,
reliability, and vulnerability metrics; assess storage-yield-reliability
relationships; determine no-fail storage with sequent peak analysis; optimize
release decisions for water supply, hydropower, and multi-objective reservoirs
using deterministic and stochastic dynamic programming; evaluate inflow
persistence using the Hurst coefficient.
Author: Sean Turner [aut, cre],
Jia Yi Ng [aut],
Stefano Galelli [aut]
Maintainer: Sean Turner <swd.turner@gmail.com>
Diff between reservoir versions 1.0.0 dated 2015-07-23 and 1.1.0 dated 2016-01-04
reservoir-1.0.0/reservoir/R/dynamic_prog.R |only reservoir-1.0.0/reservoir/R/stoch_dyanamic_prog.R |only reservoir-1.0.0/reservoir/data/example_reservoir_data.RData |only reservoir-1.0.0/reservoir/man/ResX_inflow.ts.Rd |only reservoir-1.1.0/reservoir/DESCRIPTION | 25 +- reservoir-1.1.0/reservoir/MD5 | 57 +++-- reservoir-1.1.0/reservoir/NAMESPACE | 9 reservoir-1.1.0/reservoir/R/Data.R | 14 - reservoir-1.1.0/reservoir/R/dp.R |only reservoir-1.1.0/reservoir/R/dp_hydro.R |only reservoir-1.1.0/reservoir/R/dp_multi.R |only reservoir-1.1.0/reservoir/R/dp_supply.R |only reservoir-1.1.0/reservoir/R/hurst_basic.R | 4 reservoir-1.1.0/reservoir/R/res_rel_vul.R | 122 ++++-------- reservoir-1.1.0/reservoir/R/reservoir.R | 57 +++-- reservoir-1.1.0/reservoir/R/sdp.R |only reservoir-1.1.0/reservoir/R/sdp_hydro.R |only reservoir-1.1.0/reservoir/R/sdp_multi.R |only reservoir-1.1.0/reservoir/R/sdp_supply.R |only reservoir-1.1.0/reservoir/R/sequent_peak_analysis.R | 51 +++-- reservoir-1.1.0/reservoir/R/simres.R |only reservoir-1.1.0/reservoir/R/sry_storage.R | 66 +++--- reservoir-1.1.0/reservoir/R/sry_yield.R | 74 ++++--- reservoir-1.1.0/reservoir/data/resX.RData |only reservoir-1.1.0/reservoir/inst |only reservoir-1.1.0/reservoir/man/Hurst.Rd | 7 reservoir-1.1.0/reservoir/man/Rippl.Rd | 20 - reservoir-1.1.0/reservoir/man/dp.Rd | 10 reservoir-1.1.0/reservoir/man/dp_hydro.Rd |only reservoir-1.1.0/reservoir/man/dp_multi.Rd |only reservoir-1.1.0/reservoir/man/dp_supply.Rd |only reservoir-1.1.0/reservoir/man/resX.Rd |only reservoir-1.1.0/reservoir/man/reservoir.Rd | 65 ++++-- reservoir-1.1.0/reservoir/man/rrv.Rd | 30 +- reservoir-1.1.0/reservoir/man/sdp.Rd | 4 reservoir-1.1.0/reservoir/man/sdp_hydro.Rd |only reservoir-1.1.0/reservoir/man/sdp_multi.Rd |only reservoir-1.1.0/reservoir/man/sdp_supply.Rd |only reservoir-1.1.0/reservoir/man/simRes.Rd |only reservoir-1.1.0/reservoir/man/storage.Rd | 17 - reservoir-1.1.0/reservoir/man/yield.Rd | 25 +- 41 files changed, 360 insertions(+), 297 deletions(-)
Title: Tools for Analyzing MCMC Simulations from Bayesian Inference
Description: Tools for assessing and diagnosing convergence of
Markov Chain Monte Carlo simulations, as well as for graphically display
results from full MCMC analysis. The package also facilitates the graphical
interpretation of models by providing flexible functions to plot the
results against observed variables.
Author: Xavier Fernández i MarÃn <xavier.fim@gmail.com>
Maintainer: Xavier Fernández i MarÃn <xavier.fim@gmail.com>
Diff between ggmcmc versions 0.7.2 dated 2015-09-03 and 0.7.3 dated 2016-01-04
DESCRIPTION | 10 +++-- MD5 | 74 ++++++++++++++++++++++---------------------- NAMESPACE | 2 - NEWS | 15 ++++++++ R/ggs.R | 1 R/ggs_geweke.R | 2 - R/ggs_pairs.R | 33 ++++++++++--------- man/ac.Rd | 2 - man/calc_bin.Rd | 2 - man/ci.Rd | 2 - man/get_family.Rd | 2 - man/ggmcmc.Rd | 2 - man/ggs.Rd | 2 - man/ggs_Rhat.Rd | 2 - man/ggs_autocorrelation.Rd | 2 - man/ggs_caterpillar.Rd | 2 - man/ggs_chain.Rd | 2 - man/ggs_compare_partial.Rd | 2 - man/ggs_crosscorrelation.Rd | 2 - man/ggs_density.Rd | 2 - man/ggs_geweke.Rd | 4 +- man/ggs_histogram.Rd | 2 - man/ggs_pairs.Rd | 13 ++++--- man/ggs_ppmean.Rd | 2 - man/ggs_ppsd.Rd | 2 - man/ggs_rocplot.Rd | 2 - man/ggs_running.Rd | 2 - man/ggs_separation.Rd | 2 - man/ggs_traceplot.Rd | 2 - man/gl_unq.Rd | 2 - man/radon.Rd | 2 - man/roc_calc.Rd | 2 - man/s.Rd | 2 - man/s.binary.Rd | 2 - man/s.y.rep.Rd | 2 - man/sde0f.Rd | 2 - man/y.Rd | 2 - man/y.binary.Rd | 2 - 38 files changed, 116 insertions(+), 96 deletions(-)
Title: Generate Random Data Sets
Description: Generates random data sets including: data.frames, lists,
and vectors.
Author: Tyler Rinker [aut, cre],
Josh O'Brien [ctb],
Ananda Mahto [ctb],
Matthew Sigal [ctb]
Maintainer: Tyler Rinker <tyler.rinker@gmail.com>
Diff between wakefield versions 0.2.0 dated 2015-12-02 and 0.2.1 dated 2016-01-04
DESCRIPTION | 17 - MD5 | 198 +++++++++--------- NAMESPACE | 2 NEWS | 12 + R/year.R | 16 - README.md | 390 ++++++++++++++++--------------------- data/animal_list.rda |binary data/grady_augmented.rda |binary data/languages.rda |binary data/name_neutral.rda |binary data/presidential_debates_2012.rda |binary data/state_populations.rda |binary inst/CITATION | 4 man/age.Rd | 60 ++--- man/animal.Rd | 61 ++--- man/animal_list.Rd | 2 man/answer.Rd | 62 ++--- man/area.Rd | 62 ++--- man/as_integer.Rd | 2 man/car.Rd | 62 ++--- man/children.Rd | 62 ++--- man/coin.Rd | 62 ++--- man/color.Rd | 61 ++--- man/date_stamp.Rd | 62 ++--- man/death.Rd | 61 ++--- man/dice.Rd | 61 ++--- man/dna.Rd | 61 ++--- man/dob.Rd | 60 ++--- man/dummy.Rd | 61 ++--- man/education.Rd | 61 ++--- man/employment.Rd | 61 ++--- man/eye.Rd | 61 ++--- man/grade.Rd | 61 ++--- man/grade_level.Rd | 62 ++--- man/grady_augmented.Rd | 2 man/group.Rd | 62 ++--- man/hair.Rd | 62 ++--- man/height.Rd | 61 ++--- man/hour.Rd | 2 man/id.Rd | 2 man/income.Rd | 62 ++--- man/internet_browser.Rd | 64 ++---- man/interval.Rd | 2 man/iq.Rd | 62 ++--- man/language.Rd | 62 ++--- man/languages.Rd | 2 man/letter.Rd | 59 ++--- man/level.Rd | 60 ++--- man/likert.Rd | 61 ++--- man/lorem_ipsum.Rd | 60 ++--- man/marital.Rd | 62 ++--- man/military.Rd | 62 ++--- man/minute.Rd | 2 man/month.Rd | 62 ++--- man/name.Rd | 62 ++--- man/name_neutral.Rd | 2 man/normal.Rd | 60 ++--- man/peek.Rd | 2 man/plot.tbl_df.Rd | 2 man/political.Rd | 62 ++--- man/presidential_debates_2012.Rd | 2 man/print.available.Rd | 2 man/print.variable.Rd | 2 man/probs.Rd | 2 man/r_data.Rd | 2 man/r_data_frame.Rd | 2 man/r_dummy.Rd | 2 man/r_insert.Rd | 2 man/r_list.Rd | 2 man/r_na.Rd | 2 man/r_sample.Rd | 2 man/r_sample_binary.Rd | 2 man/r_sample_factor.Rd | 2 man/r_sample_integer.Rd | 2 man/r_sample_logical.Rd | 2 man/r_sample_ordered.Rd | 2 man/r_sample_replace.Rd | 2 man/r_series.Rd | 2 man/race.Rd | 62 ++--- man/relate.Rd | 2 man/religion.Rd | 64 ++---- man/sat.Rd | 62 ++--- man/second.Rd | 2 man/sentence.Rd | 62 ++--- man/seriesname.Rd | 2 man/sex.Rd | 60 ++--- man/sex_inclusive.Rd | 60 ++--- man/smokes.Rd | 62 ++--- man/speed.Rd | 61 ++--- man/state.Rd | 62 ++--- man/state_populations.Rd | 2 man/string.Rd | 62 ++--- man/table_heat.Rd | 2 man/time_stamp.Rd | 2 man/valid.Rd | 62 ++--- man/variables.Rd | 2 man/varname.Rd | 2 man/wakefield.Rd | 2 man/year.Rd | 69 ++---- man/zip_code.Rd | 62 ++--- 100 files changed, 1601 insertions(+), 2133 deletions(-)
Title: Historical and Contemporary Boundaries of the United States of
America
Description: The boundaries for geographical units in the United States of
America contained in this package include state, county, congressional
district, and zip code tabulation area. Contemporary boundaries are provided
by the U.S. Census Bureau (public domain). Historical boundaries for the
years from 1629 to 2000 are provided form the Newberry Library's 'Atlas of
Historical County Boundaries' (licensed CC BY-NC-SA). Additional high
resolution data is provided in the 'USAboundariesData' package;
this package provides an interface to access that data.
Author: Lincoln Mullen [aut, cre],
Dr. William M. Scholl Center for American History and Culture, The
Newberry Library [cph],
United States Census Bureau [cph]
Maintainer: Lincoln Mullen <lincoln@lincolnmullen.com>
Diff between USAboundaries versions 0.1.1 dated 2014-12-24 and 0.2.0 dated 2016-01-04
USAboundaries-0.1.1/USAboundaries/R/datasets.R |only USAboundaries-0.1.1/USAboundaries/R/fortify_boundaries.R |only USAboundaries-0.2.0/USAboundaries/DESCRIPTION | 50 ++- USAboundaries-0.2.0/USAboundaries/MD5 | 60 ++-- USAboundaries-0.2.0/USAboundaries/NAMESPACE | 16 - USAboundaries-0.2.0/USAboundaries/NEWS |only USAboundaries-0.2.0/USAboundaries/R/census-bureau.R |only USAboundaries-0.2.0/USAboundaries/R/filters.R |only USAboundaries-0.2.0/USAboundaries/R/historical-atlas-county-boundaries.R |only USAboundaries-0.2.0/USAboundaries/R/install-data-pkg.R |only USAboundaries-0.2.0/USAboundaries/R/state_codes.R |only USAboundaries-0.2.0/USAboundaries/R/us_boundaries.R | 87 +++--- USAboundaries-0.2.0/USAboundaries/R/us_congressional.R |only USAboundaries-0.2.0/USAboundaries/R/us_counties.R |only USAboundaries-0.2.0/USAboundaries/R/us_states.R |only USAboundaries-0.2.0/USAboundaries/R/usboundaries-package.r | 39 +- USAboundaries-0.2.0/USAboundaries/README.md | 142 +++++++--- USAboundaries-0.2.0/USAboundaries/build/vignette.rds |binary USAboundaries-0.2.0/USAboundaries/data/cb_2014_us_cd114_20m.rda |only USAboundaries-0.2.0/USAboundaries/data/cb_2014_us_county_20m.rda |only USAboundaries-0.2.0/USAboundaries/data/cb_2014_us_state_20m.rda |only USAboundaries-0.2.0/USAboundaries/data/datalist | 4 USAboundaries-0.2.0/USAboundaries/data/hist_us_counties.rda |binary USAboundaries-0.2.0/USAboundaries/data/hist_us_states.rda |binary USAboundaries-0.2.0/USAboundaries/data/state_codes.rda |only USAboundaries-0.2.0/USAboundaries/inst/doc/usboundaries.R | 26 - USAboundaries-0.2.0/USAboundaries/inst/doc/usboundaries.Rmd | 59 ++-- USAboundaries-0.2.0/USAboundaries/inst/doc/usboundaries.html | 112 +++++-- USAboundaries-0.2.0/USAboundaries/man/USAboundaries.Rd | 29 +- USAboundaries-0.2.0/USAboundaries/man/census_boundaries.Rd |only USAboundaries-0.2.0/USAboundaries/man/hist_us_counties.Rd | 14 USAboundaries-0.2.0/USAboundaries/man/hist_us_states.Rd | 14 USAboundaries-0.2.0/USAboundaries/man/install_data_package.Rd |only USAboundaries-0.2.0/USAboundaries/man/state_codes.Rd |only USAboundaries-0.2.0/USAboundaries/man/us_boundaries.Rd | 51 ++- USAboundaries-0.2.0/USAboundaries/man/us_congressional.Rd |only USAboundaries-0.2.0/USAboundaries/man/us_counties.Rd |only USAboundaries-0.2.0/USAboundaries/man/us_states.Rd |only USAboundaries-0.2.0/USAboundaries/tests/testthat/test-us_boundaries.R | 51 +-- USAboundaries-0.2.0/USAboundaries/tests/testthat/test-us_congressional.R |only USAboundaries-0.2.0/USAboundaries/tests/testthat/test-us_counties.R |only USAboundaries-0.2.0/USAboundaries/tests/testthat/test-us_states.R |only USAboundaries-0.2.0/USAboundaries/vignettes/usboundaries.Rmd | 59 ++-- 43 files changed, 493 insertions(+), 320 deletions(-)
Title: N-Gram Based Text Categorization
Description: Text categorization based on n-grams.
Author: Kurt Hornik [aut, cre],
Johannes Rauch [aut],
Christian Buchta [aut],
Ingo Feinerer [aut]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between textcat versions 1.0-3 dated 2015-06-02 and 1.0-4 dated 2016-01-04
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/textcat.R | 4 ++-- data/ECIMCI_profiles.rda |binary data/TC_byte_profiles.rda |binary data/TC_char_profiles.rda |binary inst/CITATION | 38 ++++++++++++++++---------------------- 7 files changed, 27 insertions(+), 33 deletions(-)
Title: Dynamic Updating Methods for Player Ratings Estimation
Description: Implements schemes for estimating player or
team skill based on dynamic updating. Implemented methods include
Elo, Glicko and Stephenson. Contains pdf documentation of a
reproducible analysis using approximately two million chess
matches.
Author: Alec Stephenson and Jeff Sonas.
Maintainer: Alec Stephenson <alec_stephenson@hotmail.com>
Diff between PlayerRatings versions 1.0-0 dated 2012-07-26 and 1.0-1 dated 2016-01-04
DESCRIPTION | 21 - MD5 | 14 NAMESPACE | 2 build |only inst/doc/AFLRatings.R |only inst/doc/AFLRatings.pdf |binary inst/doc/ChessRatings.pdf |binary inst/doc/MathSport.pdf |binary inst/doc/sweave/ChessRatings.Rnw | 732 +++++++++++++++++++-------------------- 9 files changed, 389 insertions(+), 380 deletions(-)
Title: Draw Geographical Maps
Description: Display of maps. Projection code and larger maps are in
separate packages ('mapproj' and 'mapdata').
Author: Original S code by Richard A. Becker and Allan R. Wilks.
R version by Ray Brownrigg.
Enhancements by Thomas P Minka and Alex Deckmyn.
Maintainer: Alex Deckmyn <alex.deckmyn@meteo.be>
Diff between maps versions 3.0.1 dated 2015-12-04 and 3.0.2 dated 2016-01-04
DESCRIPTION | 8 MD5 | 16 inst/NEWS.Rd | 9 man/map.Rd | 14 src/world.gon | 1399 ++--- src/world.gonstats | 2 src/world.line |12841 +++++++++++++++++++++++++--------------------------- src/world.linestats | 2 src/world.name | 24 9 files changed, 7143 insertions(+), 7172 deletions(-)
Title: Tools for Spatial Data
Description: For curve, surface and function
fitting with an emphasis on splines, spatial data and spatial
statistics. The major methods include cubic, and thin plate splines,
Kriging and compact covariances for large data sets. The splines and
Kriging methods are supporting by functions that can determine the
smoothing parameter (nugget and sill variance) by cross validation
and also by restricted maximum likelihood. For Kriging there is
an easy to function that also estimates the correlation scale (range).
A major feature is that
any covariance function implemented in R and following a simple fields
format can be used for spatial prediction. There are also many useful
functions for plotting and
working with spatial data as images. This package also contains an
implementation of sparse matrix methods for large spatial data sets and
currently requires the sparse matrix (spam) package.
Use help(fields) to get started and for an
overview. The fields source code is deliberately commented and
provides useful explanations of numerical details in addition to the
manual pages. The commented source code can be viewed by expanding the
source code .tar.gz file and looking in R subdirectory.
Author: Douglas Nychka [aut, cre], Reinhard Furrer [aut], John Paige [aut], Stephan Sain [aut]
Maintainer: Douglas Nychka <nychka@ucar.edu>
Diff between fields versions 8.3-5 dated 2015-10-15 and 8.3-6 dated 2016-01-04
DESCRIPTION | 6 MD5 | 536 +++++++++++++++++----------------- R/BD.R | 2 R/ChicagoO3.R | 2 R/Exponential.R | 2 R/ExponentialUpper.R | 2 R/Krig.family.R | 4 R/Matern.R | 2 R/RMprecip.R | 2 R/SUBSCRIPTING.spatial.design.R | 2 R/US.R | 2 R/add.image.R | 2 R/arrow.plot.R | 2 R/as.image.R | 2 R/as.surface.R | 2 R/bisection.search.R | 2 R/bplot.family.R | 2 R/cat.matrix.R | 2 R/cat.to.list.R | 2 R/ceiling2.R | 2 R/coef.Krig.R | 2 R/colorbar.plot.R | 2 R/cover.design.R | 2 R/cubic.cov.R | 2 R/describe.R | 2 R/discretize.image.R | 2 R/double.exp.R | 2 R/drape.color.R | 2 R/drape.plot.R | 2 R/dyadic.2check.R | 2 R/dyadic.check.R | 2 R/evlpoly.R | 2 R/evlpoly2.R | 2 R/exp.earth.cov.R | 2 R/exp.image.cov.R | 2 R/exp.simple.cov.R | 2 R/fast.1way.R | 2 R/fastTps.family.R | 2 R/fields.color.picker.R | 2 R/fields.convert.grid.R | 2 R/fields.derivative.poly.R | 2 R/fields.diagonalize.R | 2 R/fields.diagonalize2.R | 2 R/fields.duplicated.matrix.R | 2 R/fields.mkpoly.R | 2 R/fields.rdist.near.R | 2 R/fields.style.R | 2 R/fields.x.to.grid.R | 2 R/find.upcross.R | 2 R/fitted.Krig.R | 2 R/flame.R | 2 R/gauss.cov.R | 2 R/gcv.Krig.R | 2 R/image.family.R | 6 R/image.plot.R | 2 R/image.smooth.R | 2 R/in.poly.R | 2 R/interp.surface.R | 2 R/interp.surface.grid.R | 2 R/mKrig.MLE.R | 2 R/mKrig.R | 2 R/make.surface.grid.R | 2 R/matern.image.cov.R | 2 R/minimax.crit.R | 2 R/minitri.R | 2 R/parse.grid.list.R | 2 R/plot.Krig.R | 2 R/plot.spatial.design.R | 2 R/plot.spatialProcess.R | 2 R/plot.sreg.R | 2 R/plot.surface.R | 2 R/plot.vgram.matrix.R | 2 R/poly.image.R | 2 R/predict.Krig.R | 2 R/predict.interp.surface.R | 2 R/predict.sreg.R | 2 R/predictDerivative.Krig.R | 2 R/predictSE.R | 2 R/predictSEUsingKrigA.R | 2 R/predictSurface.Krig.R | 2 R/predictSurface.family.R | 2 R/predictSurfaceSE.family.R | 4 R/print.Krig.R | 2 R/print.spatial.design.R | 2 R/print.sreg.R | 2 R/print.summary.Krig.R | 2 R/print.summary.spatial.design.R | 2 R/print.summary.spatialProcess.R | 2 R/print.summary.sreg.R | 2 R/printGCVWarnings.R | 2 R/qr.q2ty.R | 2 R/qr.yq2.R | 2 R/qsreg.family.R | 6 R/quickPrint.R | 2 R/quilt.plot.R | 2 R/rad.cov.R | 2 R/rad.image.cov.R | 2 R/rad.simple.cov.R | 2 R/radbas.constant.R | 2 R/rat.diet.R | 2 R/rdist.R | 2 R/rdist.earth.R | 2 R/rdist.earth.vec.R | 2 R/rdist.vec.R | 2 R/residuals.Krig.R | 2 R/ribbon.plot.R | 2 R/set.panel.R | 2 R/setup.image.smooth.R | 2 R/sim.Krig.R | 2 R/sim.Krig.approx.R | 2 R/sim.mKrig.approx.R | 2 R/sim.rf.R | 2 R/smooth.2d.R | 2 R/spam_2lz.R | 2 R/splint.R | 2 R/sreg.family.R | 18 - R/stationary.image.cov.R | 2 R/stationary.taper.cov.R | 2 R/stats.R | 2 R/stats.bin.R | 2 R/summary.Krig.R | 2 R/summary.ncdf.R | 2 R/summary.spatial.design.R | 2 R/summary.spatialProcess.R | 2 R/summary.sreg.R | 2 R/summaryGCV.Krig.R | 2 R/summaryGCV.sreg.R | 2 R/supportsArg.R | 2 R/surface.family.R | 10 R/test.for.zero.R | 24 - R/tim.colors.R | 2 R/transformx.R | 2 R/unrollZGrid.R | 2 R/unscale.R | 2 R/vgram.matrix.R | 2 R/wendland.family.R | 2 R/wendland.image.cov.R | 2 R/world.R | 2 R/xline.R | 2 R/yline.R | 2 man/BD.Rd | 2 man/CO.Rd | 2 man/Exponential.Rd | 2 man/Krig.Amatrix.Rd | 2 man/Krig.Rd | 2 man/Krig.engine.default.Rd | 2 man/Krig.null.function.Rd | 2 man/RMprecip.Rd | 2 man/US.Rd | 2 man/US.dat.Rd | 2 man/Wendland.Rd | 2 man/add.image.Rd | 2 man/arrow.plot.Rd | 2 man/as.image.Rd | 2 man/as.surface.Rd | 2 man/bplot.Rd | 2 man/bplot.xy.Rd | 2 man/colorbar.plot.Rd | 2 man/cover.design.Rd | 2 man/drape.plot.Rd | 2 man/exp.cov.Rd | 2 man/fields-internal.Rd | 2 man/fields-stuff.Rd | 2 man/fields.Rd | 2 man/fields.grid.Rd | 2 man/fields.hints.Rd | 2 man/fields.tests.Rd | 50 ++- man/flame.Rd | 2 man/gcv.Krig.Rd | 2 man/grid.list.Rd | 2 man/image.cov.Rd | 2 man/image.plot.Rd | 2 man/image.smooth.Rd | 2 man/image2lz.Rd | 2 man/interp.surface.Rd | 2 man/lennon.Rd | 2 man/minitri.Rd | 2 man/ozone.Rd | 2 man/ozone2.Rd | 2 man/plot.Krig.Rd | 2 man/plot.surface.Rd | 2 man/predict.Krig.Rd | 2 man/predictSE.Krig.Rd | 2 man/predictSurface.Rd | 2 man/print.Krig.Rd | 2 man/pushpin.Rd | 2 man/qsreg.Rd | 2 man/quilt.plot.Rd | 2 man/rat.diet.Rd | 2 man/rdist.Rd | 2 man/rdist.earth.Rd | 2 man/ribbon.plot.Rd | 2 man/set.panel.Rd | 2 man/sim.Krig.Rd | 2 man/sim.rf.Rd | 2 man/smooth.2d.Rd | 2 man/spam2lz.Rd | 2 man/splint.Rd | 2 man/sreg.Rd | 2 man/stats.Rd | 2 man/stats.bin.Rd | 2 man/summary.Krig.Rd | 2 man/summary.ncdf.Rd | 2 man/surface.Krig.Rd | 2 man/tim.colors.Rd | 2 man/transformx.Rd | 2 man/vgram.Rd | 2 man/vgram.matrix.Rd | 2 man/world.Rd | 2 man/xline.Rd | 2 man/yline.Rd | 2 src/css.f | 2 src/csstr.f | 2 src/cvrf.f | 2 src/dchold.f | 2 src/dcopy.f | 2 src/ddfind.f | 2 src/ddot.f | 2 src/dlv.f | 2 src/dmaket.f | 2 src/drdfun.f | 2 src/dsetup.f | 2 src/evlpoly.f | 2 src/evlpoly2.f | 2 src/expfn.f | 2 src/ifind.f | 2 src/igpoly.f | 2 src/inpoly.f | 2 src/mltdrb.f | 2 src/mltdtd.f | 2 src/multW.f | 2 src/multeb.f | 2 src/multrb.f | 2 src/radbas.f | 2 src/radfn2.f | 2 src/radfun.f | 2 src/rcss.f | 2 src/rcssr.f | 2 src/rcsswt.f | 2 src/rdist.f | 2 src/sortm.f | 2 tests/Krig.Z.test.Rout.save | 100 +++--- tests/Krig.se.W.Rout.save | 22 - tests/Krig.se.grid.test.Rout.save | 6 tests/Krig.se.test.Rout.save | 38 +- tests/Krig.test.Rout.save | 162 +++++----- tests/Krig.test.W.Rout.save | 50 +-- tests/KrigGCVREML.test.Rout.save | 34 +- tests/Likelihood.test.Rout.save | 48 +-- tests/REMLest.test.Rout.save | 30 - tests/Tps.test.Rout.save | 56 +-- tests/Wend.test.Rout.save | 26 - tests/cov.test.Rout.save | 30 - tests/derivative.test.Rout.save | 88 ++--- tests/diag.multiply.test.Rout.save | 12 tests/diagonal2.test.R | 26 - tests/diagonal2.test.Rout.save | 25 - tests/evlpoly.test.Rout.save | 12 tests/fastTpsPredict.test.Rout.save | 26 - tests/mKrig.MLE.test.Rout.save | 14 tests/mKrig.Z.Rout.save | 26 - tests/mKrig.parameters.test.Rout.save | 64 ++-- tests/mKrig.se.test.Rout.save | 50 +-- tests/mKrig.test.Rout.save | 104 +++--- tests/misc.test.Rout.save | 14 tests/spam.test.Rout.save | 38 +- tests/sreg.test.Rout.save | 24 - tests/test.cov.Rout.save | 126 +++---- tests/vgram.test.Rout.save | 14 269 files changed, 1201 insertions(+), 1190 deletions(-)
Title: Interface for the 'Box.com API'
Description: An R interface for the remote file hosting service 'Box' (https://
www.box.com/). In addition to uploading and downloading files, this package
includes functions which mirror base R operations for local files, (e.g.
box_load(), box_save(), box_read(), box_setwd(), etc.), as well as 'git'
style functions for entire directories (e.g. box_fetch(), box_push()).
Author: Brendan Rocks [aut, cre]
Maintainer: Brendan Rocks <rocks.brendan@gmail.com>
Diff between boxr versions 0.2.9 dated 2015-08-20 and 0.3.1 dated 2016-01-04
DESCRIPTION | 27 - MD5 | 96 ++--- NAMESPACE | 13 NEWS.md |only R/boxr__internal_diff_and_delete.R | 336 +++++++++--------- R/boxr__internal_diff_and_uldl.R | 302 ++++++++-------- R/boxr__internal_dir_comparison.R | 48 +- R/boxr__internal_get.R |only R/boxr__internal_misc.R | 131 +++++-- R/boxr__internal_progress.R |only R/boxr__internal_update_upload.R | 114 +++--- R/boxr__internal_verb_exit.R | 4 R/boxr_add_description.R |only R/boxr_auth.R | 97 +++-- R/boxr_delete_restore.R | 243 ++++++------- R/boxr_dir_verbs.R | 684 ++++++++++++++++++------------------- R/boxr_file_versions.R | 122 +++--- R/boxr_misc.R | 410 ++++++++++------------ R/boxr_read.R | 249 +++++++------ R/boxr_s3_classes.R | 585 +++++++++++++++++++------------ R/boxr_save_load.R | 119 +++--- R/boxr_search.R |only R/boxr_source.R | 2 R/boxr_upload_download.R | 454 ++++++++++-------------- R/boxr_write.R |only R/zzz.R | 2 build/vignette.rds |binary inst/doc/boxr.Rmd | 35 + inst/doc/boxr.html | 39 +- man/boxGet.Rd |only man/box_add_description.Rd |only man/box_auth.Rd | 20 - man/box_auth_on_attach.Rd | 2 man/box_delete_file.Rd | 13 man/box_dir_create.Rd | 9 man/box_dir_diff.Rd | 82 ++-- man/box_dl.Rd | 65 ++- man/box_fetch.Rd | 45 +- man/box_fresh_auth.Rd |only man/box_ls.Rd | 4 man/box_previous_versions.Rd | 10 man/box_read.Rd | 73 ++- man/box_save.Rd | 36 + man/box_search.Rd |only man/box_setwd.Rd | 10 man/box_source.Rd | 6 man/box_upload_new.Rd | 5 man/box_write.Rd |only man/boxr-package.Rd | 10 man/boxr_S3_classes.Rd |only man/boxr_options.Rd | 6 man/create_loc_dir_df.Rd | 6 man/dirTreeRecursive.Rd | 10 man/downloadDirFiles.Rd | 10 vignettes/boxr.Rmd | 35 + 55 files changed, 2452 insertions(+), 2117 deletions(-)