Title: Dunn's Test of Multiple Comparisons Using Rank Sums
Description: Computes Dunn's test (1964) for stochastic dominance and reports the results among multiple pairwise comparisons after a Kruskal-Wallis test for stochastic dominance among k groups (Kruskal and Wallis, 1952). The interpretation of stochastic dominance requires an assumption that the CDF of one group does not cross the CDF of the other. 'dunn.test' makes k(k-1)/2 multiple pairwise comparisons based on Dunn's z-test-statistic approximations to the actual rank statistics. The null hypothesis for each pairwise comparison is that the probability of observing a randomly selected value from the first group that is larger than a randomly selected value from the second group equals one half; this null hypothesis corresponds to that of the Wilcoxon-Mann-Whitney rank-sum test. Like the rank-sum test, if the data can be assumed to be continuous, and the distributions are assumed identical except for a difference in location, Dunn's test may be understood as a test for median difference. 'dunn.test' accounts for tied ranks.
Author: Alexis Dinno <alexis.dinno@pdx.edu>
Maintainer: Alexis Dinno <alexis.dinno@pdx.edu>
Diff between dunn.test versions 1.3.1 dated 2015-10-08 and 1.3.2 dated 2016-01-06
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/dunn.test.R | 6 +++--- 3 files changed, 9 insertions(+), 9 deletions(-)
Title: Conover-Iman Test of Multiple Comparisons Using Rank Sums
Description: Computes the Conover-Iman test (1979) for stochastic dominance and reports the results among multiple pairwise comparisons after a Kruskal-Wallis test for stochastic dominance among k groups (Kruskal and Wallis, 1952). The interpretation of stochastic dominance requires an assumption that the CDF of one group does not cross the CDF of the other. conover.test makes k(k-1)/2 multiple pairwise comparisons based on Conover-Iman t-test-statistic of the rank differences. The null hypothesis for each pairwise comparison is that the probability of observing a randomly selected value from the first group that is larger than a randomly selected value from the second group equals one half; this null hypothesis corresponds to that of the Wilcoxon-Mann-Whitney rank-sum test. Like the rank-sum test, if the data can be assumed to be continuous, and the distributions are assumed identical except for a difference in location, Conover-Iman test may be understood as a test for median difference. conover.test accounts for tied ranks. The Conover-Iman test is strictly valid if and only if the corresponding Kruskal-Wallis null hypothesis is rejected.
Author: Alexis Dinno <alexis.dinno@pdx.edu>
Maintainer: Alexis Dinno <alexis.dinno@pdx.edu>
Diff between conover.test versions 1.1.0 dated 2015-09-26 and 1.1.1 dated 2016-01-06
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/conover.test.R | 4 ++-- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Dynamic Model Averaging
Description: Dynamic model averaging for binary and continuous
outcomes.
Author: Tyler H. McCormick, Adrian Raftery, David Madigan
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between dma versions 1.2-2 dated 2014-11-06 and 1.2-3 dated 2016-01-06
ChangeLog |only DESCRIPTION | 10 +++++----- MD5 | 9 +++++---- NAMESPACE | 3 +++ R/logistic.dma.default.R | 7 ++++--- man/dma-package.Rd | 4 ++-- 6 files changed, 19 insertions(+), 14 deletions(-)
Title: Visualization of Spatial and Spatio-Temporal Objects in Google
Earth
Description: Writes sp-class, spacetime-class, raster-class and similar spatial and spatio-temporal objects to KML following some basic cartographic rules.
Author: Tomislav Hengl [cre, aut],
Pierre Roudier [ctb],
Dylan Beaudette [ctb],
Edzer Pebesma [ctb],
Michael Blaschek [ctb]
Maintainer: Tomislav Hengl <tom.hengl@isric.org>
Diff between plotKML versions 0.5-4 dated 2015-12-24 and 0.5-5 dated 2016-01-06
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- demo/plotKML.R | 3 ++- inst/doc/jss1079.pdf |binary man/plotKML.Rd | 3 ++- 5 files changed, 12 insertions(+), 10 deletions(-)
Title: Estimating Mixed Graphical Models
Description: Estimation of Mixed Graphical model using L1-regularized neighborhood regression.
Author: Jonas Haslbeck
Maintainer: Jonas Haslbeck <jonashaslbeck@gmail.com>
Diff between mgm versions 1.1-2 dated 2015-09-03 and 1.1-3 dated 2016-01-06
DESCRIPTION | 11 - MD5 | 22 +- NAMESPACE | 2 R/mgmfit.R | 13 - R/mgmsampler.R | 39 +++- R/potts_parameter.R | 56 ++---- README.md | 10 + man/mgm-package.Rd | 12 - man/mgmfit.Rd | 3 man/mgmsampler.Rd | 15 + src/RcppExports.cpp | 2 src/mMRFSampler_Ccore.cpp | 378 +++++++++++++++++++++++----------------------- 12 files changed, 293 insertions(+), 270 deletions(-)
Title: Matrix Functions for Teaching and Learning Linear Algebra and
Multivariate Statistics
Description: A collection of matrix functions for teaching and learning matrix
linear algebra as used in multivariate statistical methods. These functions are
mainly for tutorial purposes in learning matrix algebra ideas using R. In some
cases, functions are provided for concepts available elsewhere in R, but where
the function call or name is not obvious. In other cases, functions are provided
to show or demonstrate an algorithm. In addition, a collection of functions are
provided for drawing vector diagrams in 2D and 3D.
Author: Michael Friendly [aut, cre], John Fox [aut], Georges Monette [ctb], Gaston Sanchez [ctb]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between matlib versions 0.6.0 dated 2015-12-14 and 0.7.0 dated 2016-01-06
matlib-0.6.0/matlib/R/showEqn.R |only matlib-0.6.0/matlib/man/is_square_matrix.Rd |only matlib-0.6.0/matlib/man/is_symmetric_matrix.Rd |only matlib-0.7.0/matlib/DESCRIPTION | 17 ++-- matlib-0.7.0/matlib/MD5 | 58 ++++++++------- matlib-0.7.0/matlib/NAMESPACE | 8 +- matlib-0.7.0/matlib/NEWS |only matlib-0.7.0/matlib/R/arrows3d.R | 40 ++++++---- matlib-0.7.0/matlib/R/corner.R | 77 +++++++++++++++++++-- matlib-0.7.0/matlib/R/gsorth.R | 1 matlib-0.7.0/matlib/R/is_square.R | 17 ++++ matlib-0.7.0/matlib/R/matlib.R | 3 matlib-0.7.0/matlib/R/mpower.R | 2 matlib-0.7.0/matlib/R/regvec3d.R |only matlib-0.7.0/matlib/R/showeqn.R |only matlib-0.7.0/matlib/R/vectors.R | 11 ++- matlib-0.7.0/matlib/R/vectors3d.R | 52 +++++++++----- matlib-0.7.0/matlib/README.md | 10 +- matlib-0.7.0/matlib/inst/doc/gramreg.html | 40 +++++----- matlib-0.7.0/matlib/man/Proj.Rd | 8 +- matlib-0.7.0/matlib/man/arc.Rd |only matlib-0.7.0/matlib/man/arrows3d.Rd | 23 +++--- matlib-0.7.0/matlib/man/cone3d.Rd | 2 matlib-0.7.0/matlib/man/corner.Rd | 11 +-- matlib-0.7.0/matlib/man/is_square.Rd |only matlib-0.7.0/matlib/man/matlib.Rd | 3 matlib-0.7.0/matlib/man/mpower.Rd | 2 matlib-0.7.0/matlib/man/plot.regvec3d.Rd |only matlib-0.7.0/matlib/man/point_on_line.Rd | 18 +++- matlib-0.7.0/matlib/man/regvec3d.Rd |only matlib-0.7.0/matlib/man/showEqn.Rd | 2 matlib-0.7.0/matlib/man/vectors.Rd | 8 +- matlib-0.7.0/matlib/man/vectors3d.Rd | 42 ++++++++--- matlib-0.7.0/matlib/vignettes/eigen-ex1.Rmd | 3 matlib-0.7.0/matlib/vignettes/linear-equations.Rmd | 2 35 files changed, 315 insertions(+), 145 deletions(-)
Title: Download Google Sheets Using Just the URL
Description: Simple package to download Google Sheets using just the sharing
link. Spreadsheets can be downloaded as a data frame, or as plain text to parse
manually. Google Sheets is the new name for Google Docs Spreadsheets.
Author: Max Conway [aut, cre]
Maintainer: Max Conway <conway.max1@gmail.com>
Diff between gsheet versions 0.1.0 dated 2015-03-10 and 0.2.1 dated 2016-01-06
DESCRIPTION | 17 ++++++++++------- MD5 | 18 +++++++++--------- NAMESPACE | 3 ++- R/gsheet2tbl.R | 18 ++++++++++-------- R/gsheet2text.R | 17 +++++++++++++---- README.md | 24 ++++++++++++++++++++---- man/gsheet2tbl.Rd | 19 ++++++++++--------- man/gsheet2text.Rd | 11 +++++++---- tests/testthat/test-gsheet2tbl.R | 7 +++---- tests/testthat/test-gsheet2text.R | 6 ++++++ 10 files changed, 90 insertions(+), 50 deletions(-)
Title: A Package for Statistical Analysis in Epidemiology
Description: Functions for demographic and epidemiological analysis in
the Lexis diagram, i.e. register and cohort follow-up data, in
particular representation, manipulation and simulation of multistate
data - the Lexis suite of functions, which includes interfaces to
mstate, etm and cmprsk packages.
Also contains functions for Age-Period-Cohort modeling and a
function for interval censored data and some useful functions for
tabulation and plotting, as well some epidemiological datasets.
Author: Bendix Carstensen [aut, cre],
Martyn Plummer [aut],
Esa Laara [ctb],
Michael Hills [ctb]
Maintainer: Bendix Carstensen <bxc@steno.dk>
Diff between Epi versions 1.1.71 dated 2015-09-17 and 2.0 dated 2016-01-06
Epi-1.1.71/Epi/inst/doc/sim-Lexis.rnw |only Epi-1.1.71/Epi/vignettes/sim-Lexis.rnw |only Epi-2.0/Epi/CHANGES | 10 ++++ Epi-2.0/Epi/DESCRIPTION | 16 +++--- Epi-2.0/Epi/MD5 | 36 ++++++++------- Epi-2.0/Epi/NAMESPACE | 9 +++ Epi-2.0/Epi/R/factorize.R | 2 Epi-2.0/Epi/R/foreign.R | 2 Epi-2.0/Epi/R/lexis.R | 77 +++++++++++++++++++++++++++++++++ Epi-2.0/Epi/R/simLexis.R | 39 +++++++++------- Epi-2.0/Epi/build/vignette.rds |binary Epi-2.0/Epi/inst/doc/index.html | 4 - Epi-2.0/Epi/inst/doc/sim-Lexis.pdf |binary Epi-2.0/Epi/inst/doc/simLexis.R |only Epi-2.0/Epi/inst/doc/simLexis.pdf |only Epi-2.0/Epi/inst/doc/simLexis.rnw |only Epi-2.0/Epi/man/Lexis.Rd | 2 Epi-2.0/Epi/man/N2Y.Rd | 28 +++++++++--- Epi-2.0/Epi/man/Ns.Rd | 30 +++++++----- Epi-2.0/Epi/man/rbind.Lexis.Rd |only Epi-2.0/Epi/man/subset.Lexis.Rd | 14 +++--- Epi-2.0/Epi/vignettes/index.html |only Epi-2.0/Epi/vignettes/simLexis.rnw |only 23 files changed, 200 insertions(+), 69 deletions(-)
Title: Modeling Framework for Cellular Communities in their
Environments
Description: Can be used for simulation of organisms living in
communities. Each organism is represented individually and genome scale
metabolic models determine the uptake and release of compounds. Biological
processes such as movement, diffusion, chemotaxis and kinetics are available
along with data analysis techniques.
Author: Eugen Bauer [aut],
Johannes Zimmermann [aut, cre]
Maintainer: Johannes Zimmermann <j.zimmermann@iem.uni-kiel.de>
Diff between BacArena versions 1.0 dated 2015-12-08 and 1.0.1 dated 2016-01-06
BacArena-1.0.1/BacArena/DESCRIPTION | 10 BacArena-1.0.1/BacArena/MD5 | 26 +- BacArena-1.0.1/BacArena/NAMESPACE | 12 BacArena-1.0.1/BacArena/NEWS |only BacArena-1.0.1/BacArena/R/Arena.R | 141 ++++++++++- BacArena-1.0.1/BacArena/R/Stuff.R | 32 +- BacArena-1.0.1/BacArena/R/Substance.R | 2 BacArena-1.0.1/BacArena/README.md | 24 + BacArena-1.0.1/BacArena/build/vignette.rds |binary BacArena-1.0.1/BacArena/inst/doc/BacArena-Introduction.R | 2 BacArena-1.0.1/BacArena/inst/doc/BacArena-Introduction.Rmd | 4 BacArena-1.0.1/BacArena/inst/doc/BacArena-Introduction.pdf |only BacArena-1.0.1/BacArena/man/findFeeding.Rd |only BacArena-1.0.1/BacArena/man/openArena.Rd |only BacArena-1.0.1/BacArena/vignettes/BacArena-Introduction.Rmd | 4 BacArena-1.0.1/BacArena/vignettes/BacArena-Introduction.html |only BacArena-1.0/BacArena/inst/doc/BacArena-Introduction.html |only 17 files changed, 211 insertions(+), 46 deletions(-)
Title: WordNet Interface
Description: An interface to WordNet using the Jawbone Java API to WordNet.
WordNet (<http://wordnet.princeton.edu/>) is a large lexical database of
English. Nouns, verbs, adjectives and adverbs are grouped into sets of
cognitive synonyms (synsets), each expressing a distinct concept. Synsets
are interlinked by means of conceptual-semantic and lexical relations.
Please note that WordNet(R) is a registered tradename. Princeton
University makes WordNet available to research and commercial users
free of charge provided the terms of their license
(<http://wordnet.princeton.edu/wordnet/license/>) are followed, and
proper reference is made to the project using an appropriate
citation (<http://wordnet.princeton.edu/wordnet/citing-wordnet/>).
Author: Ingo Feinerer [aut],
Kurt Hornik [aut, cre],
Mike Wallace [ctb, cph] (Jawbone Java WordNet API library)
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between wordnet versions 0.1-10 dated 2014-09-01 and 0.1-11 dated 2016-01-06
DESCRIPTION | 8 ++++---- LICENSE | 7 +++++-- MD5 | 10 +++++----- build/vignette.rds |binary inst/CITATION | 46 +++++++++++++++------------------------------- inst/doc/wordnet.pdf |binary 6 files changed, 29 insertions(+), 42 deletions(-)
Title: Spherical k-Means Clustering
Description: Algorithms to compute spherical k-means partitions.
Features several methods, including a genetic and a fixed-point
algorithm and an interface to the CLUTO vcluster program.
Author: Kurt Hornik [aut, cre],
Ingo Feinerer [aut],
Martin Kober [aut]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between skmeans versions 0.2-7 dated 2015-06-24 and 0.2-8 dated 2016-01-06
DESCRIPTION | 6 +++--- MD5 | 4 ++-- inst/CITATION | 34 ++++++++++++++-------------------- 3 files changed, 19 insertions(+), 25 deletions(-)
Title: Simulations to Predict the Number of RAD and GBS Loci
Description: Provides a number of functions to simulate restriction enzyme digestion, library construction and fragments size selection to predict the number of loci expected from most of the Restriction site Associated DNA (RAD) and Genotyping By Sequencing (GBS) approaches. SimRAD estimates the number of loci expected from a particular genome depending on the protocol type and parameters allowing to assess feasibility, multiplexing capacity and the amount of sequencing required.
Author: Olivier Lepais [aut, cre],
Jason Weir [aut]
Maintainer: Olivier Lepais <olepais@st-pee.inra.fr>
Diff between SimRAD versions 0.95 dated 2014-11-24 and 0.96 dated 2016-01-06
DESCRIPTION | 18 +++++++++--------- MD5 | 18 +++++++++--------- NAMESPACE | 4 +++- man/SimRAD-package.Rd | 6 +++--- man/adapt.select.Rd | 2 +- man/exclude.seqsite.Rd | 2 +- man/insilico.digest.Rd | 2 +- man/ref.DNAseq.Rd | 2 +- man/sim.DNAseq.Rd | 2 +- man/size.select.Rd | 2 +- 10 files changed, 30 insertions(+), 28 deletions(-)
Title: Interactive Visual and Numerical Diagnostics and Posterior
Analysis for Bayesian Models
Description: We provide a graphical user interface for interactive Markov chain
Monte Carlo (MCMC) diagnostics and plots and tables helpful for analyzing a
posterior sample. The interface is powered by RStudio's Shiny web application
framework and works with the output of MCMC programs written in any programming
language (and has extended functionality for Stan models fit using the rstan
package and the No-U-Turn sampler).
Author: Jonah Gabry [aut, cre],
Stan Development Team [ctb],
Michael Andreae [ctb],
Michael Betancourt [ctb],
Bob Carpenter [ctb],
Yuanjun Gao [ctb],
Andrew Gelman [ctb],
Ben Goodrich [ctb],
Daniel Lee [ctb],
Dongying Song [ctb],
Rob Trangucci [ctb]
Maintainer: Jonah Gabry <jsg2201@columbia.edu>
Diff between shinystan versions 2.0.1 dated 2015-09-17 and 2.1.0 dated 2016-01-06
shinystan-2.0.1/shinystan/inst/ShinyStan/server_files/utilities/update_multiparam_selectize.R |only shinystan-2.0.1/shinystan/inst/doc/deploying-shinyStan.Rmd |only shinystan-2.0.1/shinystan/inst/doc/deploying-shinyStan.html |only shinystan-2.0.1/shinystan/inst/doc/using-shinyStan.Rmd |only shinystan-2.0.1/shinystan/inst/doc/using-shinyStan.html |only shinystan-2.0.1/shinystan/vignettes/deploying-shinyStan.Rmd |only shinystan-2.0.1/shinystan/vignettes/using-shinyStan.Rmd |only shinystan-2.1.0/shinystan/DESCRIPTION | 30 +- shinystan-2.1.0/shinystan/MD5 | 132 +++++----- shinystan-2.1.0/shinystan/NAMESPACE | 2 shinystan-2.1.0/shinystan/R/array2shinystan.R | 2 shinystan-2.1.0/shinystan/R/as.shinystan.R | 21 + shinystan-2.1.0/shinystan/R/chains2shinystan.R | 24 - shinystan-2.1.0/shinystan/R/convenience.R | 2 shinystan-2.1.0/shinystan/R/deploy_shinystan.R | 33 +- shinystan-2.1.0/shinystan/R/eight_schools.R | 2 shinystan-2.1.0/shinystan/R/generate_quantity.R | 8 shinystan-2.1.0/shinystan/R/launch_shinystan.R | 3 shinystan-2.1.0/shinystan/R/launch_shinystan_demo.R | 3 shinystan-2.1.0/shinystan/R/mcmc2shinystan.R | 2 shinystan-2.1.0/shinystan/R/misc.R | 2 shinystan-2.1.0/shinystan/R/model_code.R | 4 shinystan-2.1.0/shinystan/R/notes.R | 15 + shinystan-2.1.0/shinystan/R/rename_model.R | 2 shinystan-2.1.0/shinystan/R/retrieve.R | 2 shinystan-2.1.0/shinystan/R/shinystan-class.R | 2 shinystan-2.1.0/shinystan/R/shinystan-package.R | 19 - shinystan-2.1.0/shinystan/R/sso_info.R | 4 shinystan-2.1.0/shinystan/R/stan2shinystan.R | 7 shinystan-2.1.0/shinystan/R/stanreg2shinystan.R | 41 ++- shinystan-2.1.0/shinystan/R/update_sso.R | 15 + shinystan-2.1.0/shinystan/R/zzz.R | 2 shinystan-2.1.0/shinystan/build/vignette.rds |binary shinystan-2.1.0/shinystan/inst/ShinyStan/css/ShinyStan.css | 26 + shinystan-2.1.0/shinystan/inst/ShinyStan/css/ShinyStan_datatables.css | 16 - shinystan-2.1.0/shinystan/inst/ShinyStan/ggplot_fns.rda |binary shinystan-2.1.0/shinystan/inst/ShinyStan/ggplot_fns_old.rda |only shinystan-2.1.0/shinystan/inst/ShinyStan/global.R | 1 shinystan-2.1.0/shinystan/inst/ShinyStan/global_utils.R | 48 ++- shinystan-2.1.0/shinystan/inst/ShinyStan/helper_functions/hmc_diagnostics_helpers.R | 10 shinystan-2.1.0/shinystan/inst/ShinyStan/helper_functions/shinystan_helpers.R | 3 shinystan-2.1.0/shinystan/inst/ShinyStan/helper_functions/summary_stats_helpers.R | 2 shinystan-2.1.0/shinystan/inst/ShinyStan/html/citation.html | 4 shinystan-2.1.0/shinystan/inst/ShinyStan/server.R | 68 ++--- shinystan-2.1.0/shinystan/inst/ShinyStan/server_files/pages/diagnose/ppcheck/ppcheck_helpers.R | 2 shinystan-2.1.0/shinystan/inst/ShinyStan/server_files/pages/diagnose/ppcheck/server/rstanarm.R |only shinystan-2.1.0/shinystan/inst/ShinyStan/server_files/pages/diagnose/server/diagnostics.R | 70 ++--- shinystan-2.1.0/shinystan/inst/ShinyStan/server_files/pages/estimate/ui/multiparam_selectize.R | 45 +++ shinystan-2.1.0/shinystan/inst/ShinyStan/server_files/utilities/extract_sso.R | 2 shinystan-2.1.0/shinystan/inst/ShinyStan/server_files/utilities/make_param_list_with_groups_sort.R | 27 -- shinystan-2.1.0/shinystan/inst/ShinyStan/ui.R | 55 ++-- shinystan-2.1.0/shinystan/inst/ShinyStan/ui_files/about.R | 4 shinystan-2.1.0/shinystan/inst/ShinyStan/ui_files/diagnostics_customize.R | 6 shinystan-2.1.0/shinystan/inst/ShinyStan/ui_files/pp_navlist.R | 6 shinystan-2.1.0/shinystan/inst/ShinyStan/ui_files/pp_navlist_rstanarm.R |only shinystan-2.1.0/shinystan/inst/doc/deploy_shinystan.Rmd |only shinystan-2.1.0/shinystan/inst/doc/deploy_shinystan.html |only shinystan-2.1.0/shinystan/inst/doc/shinystan-package.Rmd |only shinystan-2.1.0/shinystan/inst/doc/shinystan-package.html |only shinystan-2.1.0/shinystan/man/as.shinystan.Rd | 17 - shinystan-2.1.0/shinystan/man/deploy_shinystan.Rd | 37 +- shinystan-2.1.0/shinystan/man/eight_schools.Rd | 2 shinystan-2.1.0/shinystan/man/generate_quantity.Rd | 6 shinystan-2.1.0/shinystan/man/launch_shinystan.Rd | 17 - shinystan-2.1.0/shinystan/man/launch_shinystan_demo.Rd | 15 - shinystan-2.1.0/shinystan/man/model_code.Rd | 8 shinystan-2.1.0/shinystan/man/notes.Rd | 9 shinystan-2.1.0/shinystan/man/rename_model.Rd | 3 shinystan-2.1.0/shinystan/man/retrieve.Rd | 11 shinystan-2.1.0/shinystan/man/shinystan-class.Rd | 6 shinystan-2.1.0/shinystan/man/shinystan-package.Rd | 47 +-- shinystan-2.1.0/shinystan/man/sso_info.Rd | 4 shinystan-2.1.0/shinystan/man/update_sso.Rd | 7 shinystan-2.1.0/shinystan/vignettes/deploy_shinystan.Rmd |only shinystan-2.1.0/shinystan/vignettes/shinystan-package.Rmd |only 75 files changed, 562 insertions(+), 401 deletions(-)
Title: Perform Common JavaScript Operations in Shiny Apps using Plain R
Code
Description: Perform common JavaScript operations in Shiny applications without
having to know any JavaScript. Examples include: hiding an element, disabling
an input, resetting an input back to its original value, delaying code execution
by a few seconds, and many more useful functions. 'shinyjs' can also be used to
easily run your own custom JavaScript functions from R.
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali <daattali@gmail.com>
Diff between shinyjs versions 0.3.0 dated 2015-12-30 and 0.3.1 dated 2016-01-06
DESCRIPTION | 7 ++++--- MD5 | 6 +++--- inst/doc/overview.html | 6 +++--- inst/srcjs/shinyjs-default-funcs.js | 2 +- 4 files changed, 11 insertions(+), 10 deletions(-)
Title: Bayesian Graphical Models using MCMC
Description: Interface to the JAGS MCMC library.
Author: Martyn Plummer [aut, cre],
Alexey Stukalov [ctb],
Matt Denwood [ctb]
Maintainer: Martyn Plummer <plummerm@iarc.fr>
Diff between rjags versions 4-4 dated 2015-10-22 and 4-5 dated 2016-01-06
rjags-4-4/rjags/src/jags.cc.orig |only rjags-4-4/rjags/src/parallel.cc.orig |only rjags-4-5/rjags/DESCRIPTION | 8 +- rjags-4-5/rjags/INSTALL | 109 +++++++++++++++++++++-------------- rjags-4-5/rjags/MD5 | 10 +-- rjags-4-5/rjags/configure | 63 ++++++++++++++------ rjags-4-5/rjags/configure.ac | 43 ++++++++----- 7 files changed, 144 insertions(+), 89 deletions(-)
Title: Self Contained Units of Source Code
Description: Provides modules as an organizational unit for source code. Modules
enforce to be more rigorous when defining dependencies and have
a local search path. They can be used as a sub unit within packages
or in scripts.
Author: Sebastian Warnholz [aut, cre]
Maintainer: Sebastian Warnholz <wahani@gmail.com>
Diff between modules versions 0.1.0 dated 2015-12-19 and 0.2.0 dated 2016-01-06
DESCRIPTION | 15 - LICENSE | 26 +- MD5 | 37 +- NAMESPACE | 5 NEWS | 26 +- R/getSearchPath.R |only R/modfun.R |only R/module-class.R | 40 +-- R/module-coercion.R | 46 ++- R/module-helper.R | 115 +++++---- R/module.R | 259 +++++++++++--------- inst/doc/modulesInR.R | 47 ++- inst/doc/modulesInR.Rmd | 110 +++++--- inst/doc/modulesInR.html | 95 ++++--- man/modfun.Rd |only man/module.Rd | 38 ++- man/utilityFunctions.Rd |only tests/testthat.R | 8 tests/testthat/test-model-coercion.R | 55 +++- tests/testthat/test-modfun.R |only tests/testthat/test-module.R | 434 +++++++++++++++++++---------------- vignettes/modulesInR.Rmd | 110 +++++--- 22 files changed, 873 insertions(+), 593 deletions(-)
Title: Miscellaneous Functions from M. Kohl
Description: Contains several functions for statistical data analysis; e.g. for sample size and power calculations, computation of confidence intervals, and generation of similarity matrices.
Author: Matthias Kohl [aut, cre]
Maintainer: Matthias Kohl <Matthias.Kohl@stamats.de>
Diff between MKmisc versions 0.99 dated 2015-06-29 and 0.991 dated 2016-01-06
DESCRIPTION | 8 ++++---- MD5 | 8 +++++--- NAMESPACE | 3 ++- NEWS | 6 ++++++ R/simCorVars.R |only man/simCorVars.Rd |only 6 files changed, 17 insertions(+), 8 deletions(-)
Title: Implementation of the 'Lights Out' Puzzle Game
Description: Lights Out is a puzzle game consisting of a grid of lights
that are either on or off. Pressing any light will toggle it and its
adjacent lights. The goal of the game is to switch all the lights off. This
package provides an interface to play the game on different board sizes,
both through the command line or with a visual application. Puzzles can
also be solved using the automatic solver included. View a demo
online at http://daattali.com/shiny/lightsout/.
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali <daattali@gmail.com>
Diff between lightsout versions 0.2 dated 2016-01-04 and 0.2.1 dated 2016-01-06
DESCRIPTION | 7 ++++--- MD5 | 4 ++-- inst/doc/overview.html | 6 +++--- 3 files changed, 9 insertions(+), 8 deletions(-)
Title: Add Marginal Histograms to 'ggplot2', and More 'ggplot2'
Enhancements
Description: Collection of functions and layers to enhance 'ggplot2'. The main
function is ggMarginal(), which can be used to add marginal
histograms/boxplots/density plots to 'ggplot2' scatterplots.
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali <daattali@gmail.com>
Diff between ggExtra versions 0.3.1 dated 2015-11-07 and 0.3.4 dated 2016-01-06
DESCRIPTION | 8 +++++--- MD5 | 30 +++++++++++++++--------------- NAMESPACE | 2 +- NEWS.md | 12 ++++++++++++ R/ggMarginal.R | 5 +++++ R/runExample.R | 5 +++++ inst/doc/overview.html | 6 +++--- inst/examples/ggMarginal/ui.R | 11 ++++++----- inst/examples/ggMarginal/www/style.css | 6 +++--- man/ggExtra.Rd | 4 ++-- man/ggMarginal.Rd | 9 +++++---- man/plotCount.Rd | 8 ++++---- man/print.ggExtraPlot.Rd | 2 +- man/removeGrid.Rd | 2 +- man/rotateTextX.Rd | 2 +- man/runExample.Rd | 2 +- 16 files changed, 70 insertions(+), 44 deletions(-)
Title: Avoid the Typical Working Directory Pain When Using 'knitr'
Description: An extension of 'knitr' that adds flexibility in several
ways. One common source of frustration with 'knitr' is that it assumes
the directory where the source file lives should be the working directory,
which is often not true. 'ezknitr' addresses this problem by giving you
complete control over where all the inputs and outputs are, and adds several
other convenient features to make rendering markdown/HTML documents easier.
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali <daattali@gmail.com>
Diff between ezknitr versions 0.3.0 dated 2015-12-08 and 0.3.1 dated 2016-01-06
DESCRIPTION | 9 +++++---- MD5 | 11 ++++++----- NEWS.md |only README.md | 35 ++++++++++++++++++++--------------- inst/doc/overview.Rmd | 10 ++++++---- inst/doc/overview.html | 15 ++++++++------- vignettes/overview.Rmd | 10 ++++++---- 7 files changed, 51 insertions(+), 39 deletions(-)
Title: Implementation of the Dynamic TOPMODEL Hydrological Model
Description: A native R implementation and enhancement of the Dynamic TOPMODEL
semi-distributed hydrological model. Includes some pre-processsing and
output routines.
Author: Peter Metcalfe, Keith Beven and Jim Freer
Maintainer: Peter Metcalfe <p.metcalfe@lancaster.ac.uk>
Diff between dynatopmodel versions 1.0 dated 2014-05-13 and 1.1 dated 2016-01-06
dynatopmodel-1.0/dynatopmodel/R/AddParam.R |only dynatopmodel-1.0/dynatopmodel/R/Addupslope.areas.R |only dynatopmodel-1.0/dynatopmodel/R/AdjacencyMatrix.R |only dynatopmodel-1.0/dynatopmodel/R/AggregateLayer.R |only dynatopmodel-1.0/dynatopmodel/R/ArrowsPts.R |only dynatopmodel-1.0/dynatopmodel/R/Bearing.R |only dynatopmodel-1.0/dynatopmodel/R/BufferLines.R |only dynatopmodel-1.0/dynatopmodel/R/BuildReachRaster.R |only dynatopmodel-1.0/dynatopmodel/R/Catchment3dOverview.R |only dynatopmodel-1.0/dynatopmodel/R/CellBoundingPoly.R |only dynatopmodel-1.0/dynatopmodel/R/CellExtent.R |only dynatopmodel-1.0/dynatopmodel/R/CheckAllParams.R |only dynatopmodel-1.0/dynatopmodel/R/CheckClass.R |only dynatopmodel-1.0/dynatopmodel/R/CheckClassAndNotNull.R |only dynatopmodel-1.0/dynatopmodel/R/CheckNotNull.R |only dynatopmodel-1.0/dynatopmodel/R/CheckParams.R |only dynatopmodel-1.0/dynatopmodel/R/CloneLayer.R |only dynatopmodel-1.0/dynatopmodel/R/ConnectLines.R |only dynatopmodel-1.0/dynatopmodel/R/CopyVals.R |only dynatopmodel-1.0/dynatopmodel/R/DEMFromRaster.R |only dynatopmodel-1.0/dynatopmodel/R/DEMToRaster.R |only dynatopmodel-1.0/dynatopmodel/R/DisplayObservedFlows.R |only dynatopmodel-1.0/dynatopmodel/R/DistanceMatrix.R |only dynatopmodel-1.0/dynatopmodel/R/DoUpdateBaseFlows.R |only dynatopmodel-1.0/dynatopmodel/R/DownslopeFlowAllocations.R |only dynatopmodel-1.0/dynatopmodel/R/DrawDirectedLine.R |only dynatopmodel-1.0/dynatopmodel/R/DrawDirectedLineSegments.R |only dynatopmodel-1.0/dynatopmodel/R/DriveName.R |only dynatopmodel-1.0/dynatopmodel/R/DropNormal.R |only dynatopmodel-1.0/dynatopmodel/R/ExpandPoly.R |only dynatopmodel-1.0/dynatopmodel/R/FindNext.R |only dynatopmodel-1.0/dynatopmodel/R/FixNullOrLt.R |only dynatopmodel-1.0/dynatopmodel/R/Get3dTransformedDRN.R |only dynatopmodel-1.0/dynatopmodel/R/GetCRS.R |only dynatopmodel-1.0/dynatopmodel/R/GetCoords.R |only dynatopmodel-1.0/dynatopmodel/R/GetLineID.R |only dynatopmodel-1.0/dynatopmodel/R/GetNextDownslopeCell.R |only dynatopmodel-1.0/dynatopmodel/R/GetSaturated.R |only dynatopmodel-1.0/dynatopmodel/R/GetSpatialOutput.R |only dynatopmodel-1.0/dynatopmodel/R/GetTimeSeriesInputRange.R |only dynatopmodel-1.0/dynatopmodel/R/GetUserResponse.R |only dynatopmodel-1.0/dynatopmodel/R/HighlightCell.R |only dynatopmodel-1.0/dynatopmodel/R/HighlightCell3d.R |only dynatopmodel-1.0/dynatopmodel/R/HighlightCells.R |only dynatopmodel-1.0/dynatopmodel/R/InitialiseChannelFlows.R |only dynatopmodel-1.0/dynatopmodel/R/IntercellDists.R |only dynatopmodel-1.0/dynatopmodel/R/IntersectionAngle.R |only dynatopmodel-1.0/dynatopmodel/R/KMLLineToSpatialPolygonsDataFrame.R |only dynatopmodel-1.0/dynatopmodel/R/Last.R |only dynatopmodel-1.0/dynatopmodel/R/LineCentroid.R |only dynatopmodel-1.0/dynatopmodel/R/LineLengths.R |only dynatopmodel-1.0/dynatopmodel/R/LineToIntersection.R |only dynatopmodel-1.0/dynatopmodel/R/LogEvent.R |only 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dynatopmodel-1.0/dynatopmodel/R/ProjectSpatial.R |only dynatopmodel-1.0/dynatopmodel/R/ReadDischargeData.R |only dynatopmodel-1.0/dynatopmodel/R/RecombineShapes.R |only dynatopmodel-1.0/dynatopmodel/R/ResetFluxes.R |only dynatopmodel-1.0/dynatopmodel/R/ResetStorages.R |only dynatopmodel-1.0/dynatopmodel/R/RunSummary.R |only dynatopmodel-1.0/dynatopmodel/R/RunTOPMODEL.R |only dynatopmodel-1.0/dynatopmodel/R/SetFigWindow.R |only dynatopmodel-1.0/dynatopmodel/R/ShowAllocation.R |only dynatopmodel-1.0/dynatopmodel/R/SlopeGDAL.R |only dynatopmodel-1.0/dynatopmodel/R/SnapExtent.R |only dynatopmodel-1.0/dynatopmodel/R/SpatialLinesDataFrameToIgraph.R |only dynatopmodel-1.0/dynatopmodel/R/SpatialSequence.R |only dynatopmodel-1.0/dynatopmodel/R/StoresEmpty.R |only dynatopmodel-1.0/dynatopmodel/R/StoresFull.R |only dynatopmodel-1.0/dynatopmodel/R/UniqueExcludingNAs.R |only dynatopmodel-1.0/dynatopmodel/R/VectProd.R |only dynatopmodel-1.0/dynatopmodel/R/WeightedAverage.R |only 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dynatopmodel-1.0/dynatopmodel/R/time.interval.intersection.R |only dynatopmodel-1.0/dynatopmodel/R/unsat.zone.R |only dynatopmodel-1.0/dynatopmodel/R/update.output.R |only dynatopmodel-1.0/dynatopmodel/R/update.storages.R |only dynatopmodel-1.0/dynatopmodel/R/update.subsurface.R |only dynatopmodel-1.0/dynatopmodel/R/upslope.area.R |only dynatopmodel-1.0/dynatopmodel/R/water.balance.R |only dynatopmodel-1.0/dynatopmodel/R/write.disc.R |only dynatopmodel-1.0/dynatopmodel/R/write.obs.R |only dynatopmodel-1.0/dynatopmodel/R/write.proj.R |only dynatopmodel-1.0/dynatopmodel/data/gwy_demo_run.rda |only dynatopmodel-1.0/dynatopmodel/data/mor.rda |only dynatopmodel-1.0/dynatopmodel/data/mor_demo_run.rda |only dynatopmodel-1.0/dynatopmodel/man/add.disc.Rd |only dynatopmodel-1.0/dynatopmodel/man/apply.params.Rd |only dynatopmodel-1.0/dynatopmodel/man/build.calib.set.Rd |only dynatopmodel-1.0/dynatopmodel/man/create.proj.Rd |only dynatopmodel-1.0/dynatopmodel/man/disc.catch.Rd |only dynatopmodel-1.0/dynatopmodel/man/disc.from.dir.Rd |only dynatopmodel-1.0/dynatopmodel/man/disp.run.Rd |only dynatopmodel-1.0/dynatopmodel/man/dynatopmodel-package.Rd |only dynatopmodel-1.0/dynatopmodel/man/figures |only dynatopmodel-1.0/dynatopmodel/man/gr.off.Rd |only dynatopmodel-1.0/dynatopmodel/man/gr.on.Rd |only dynatopmodel-1.0/dynatopmodel/man/gwy.demo.run.Rd |only dynatopmodel-1.0/dynatopmodel/man/mor.Rd |only dynatopmodel-1.0/dynatopmodel/man/mor.demo.run.Rd |only dynatopmodel-1.0/dynatopmodel/man/rebuild.disc.Rd |only dynatopmodel-1.0/dynatopmodel/man/run.gof.Rd |only dynatopmodel-1.0/dynatopmodel/man/run.proj.Rd |only dynatopmodel-1.0/dynatopmodel/man/run.sets.Rd |only dynatopmodel-1.0/dynatopmodel/man/write.disc.Rd |only dynatopmodel-1.0/dynatopmodel/man/write.proj.Rd |only dynatopmodel-1.1/dynatopmodel/DESCRIPTION | 26 dynatopmodel-1.1/dynatopmodel/MD5 | 347 +--------- dynatopmodel-1.1/dynatopmodel/NAMESPACE | 170 +--- dynatopmodel-1.1/dynatopmodel/NEWS |only dynatopmodel-1.1/dynatopmodel/R/balance.r |only dynatopmodel-1.1/dynatopmodel/R/brompton.r |only dynatopmodel-1.1/dynatopmodel/R/build_chans.R |only dynatopmodel-1.1/dynatopmodel/R/build_hru.r |only dynatopmodel-1.1/dynatopmodel/R/build_layers.R |only dynatopmodel-1.1/dynatopmodel/R/build_routing_table.r |only dynatopmodel-1.1/dynatopmodel/R/debug.r |only dynatopmodel-1.1/dynatopmodel/R/defs.r |only dynatopmodel-1.1/dynatopmodel/R/discretise.r |only dynatopmodel-1.1/dynatopmodel/R/disp_util.r |only dynatopmodel-1.1/dynatopmodel/R/distribute.r |only dynatopmodel-1.1/dynatopmodel/R/dtm_main.r |only dynatopmodel-1.1/dynatopmodel/R/dynatopmodel.r |only dynatopmodel-1.1/dynatopmodel/R/evap.r |only dynatopmodel-1.1/dynatopmodel/R/hydro_util.r |only dynatopmodel-1.1/dynatopmodel/R/initial.r |only dynatopmodel-1.1/dynatopmodel/R/kinematic_desolve.r |only dynatopmodel-1.1/dynatopmodel/R/list_util.r |only dynatopmodel-1.1/dynatopmodel/R/maths_util.r |only dynatopmodel-1.1/dynatopmodel/R/rain.R |only dynatopmodel-1.1/dynatopmodel/R/read_obs.r |only dynatopmodel-1.1/dynatopmodel/R/results.r |only dynatopmodel-1.1/dynatopmodel/R/root_zone.R |only dynatopmodel-1.1/dynatopmodel/R/route_ovf.r |only dynatopmodel-1.1/dynatopmodel/R/routing.r |only dynatopmodel-1.1/dynatopmodel/R/unsat_zone.R |only dynatopmodel-1.1/dynatopmodel/R/update_subsurface.r |only dynatopmodel-1.1/dynatopmodel/R/upslope_area.r |only dynatopmodel-1.1/dynatopmodel/R/weighted.average.r |only dynatopmodel-1.1/dynatopmodel/R/xts_util.r |only dynatopmodel-1.1/dynatopmodel/data/brompton.rda |only dynatopmodel-1.1/dynatopmodel/data/datalist |only dynatopmodel-1.1/dynatopmodel/man/NSE.Rd |only dynatopmodel-1.1/dynatopmodel/man/aggregate_obs.Rd |only dynatopmodel-1.1/dynatopmodel/man/approx.pe.ts.Rd | 100 +- dynatopmodel-1.1/dynatopmodel/man/brompton.Rd |only dynatopmodel-1.1/dynatopmodel/man/build_chans.Rd |only dynatopmodel-1.1/dynatopmodel/man/build_layers.Rd |only dynatopmodel-1.1/dynatopmodel/man/build_routing_table.Rd |only dynatopmodel-1.1/dynatopmodel/man/discretise.Rd |only dynatopmodel-1.1/dynatopmodel/man/disp.par.Rd |only dynatopmodel-1.1/dynatopmodel/man/disp_output.Rd |only dynatopmodel-1.1/dynatopmodel/man/dynatopmodel.Rd |only dynatopmodel-1.1/dynatopmodel/man/run.dtm.Rd | 231 +++--- dynatopmodel-1.1/dynatopmodel/man/time_at_peak.Rd |only dynatopmodel-1.1/dynatopmodel/man/time_to_peak.Rd |only dynatopmodel-1.1/dynatopmodel/man/upslope.area.Rd | 63 - 339 files changed, 337 insertions(+), 600 deletions(-)
Title: Cluster Ensembles
Description: CLUster Ensembles.
Author: Kurt Hornik [aut, cre],
Walter Böhm [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between clue versions 0.3-50 dated 2015-06-14 and 0.3-51 dated 2016-01-06
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- build/vignette.rds |binary data/CKME.rda |binary data/Cassini.rda |binary data/GVME.rda |binary data/GVME_Consensus.rda |binary data/Kinship82.rda |binary data/Kinship82_Consensus.rda |binary data/Phonemes.rda |binary inst/CITATION | 42 +++++++++++++----------------------------- inst/doc/clue.pdf |binary 12 files changed, 27 insertions(+), 43 deletions(-)
Title: Basic Non-Compartmental Pharmacokinetics
Description: Estimation of pharmacokinetic parameters using non-compartmental theory.
Author: Thomas Jaki <jaki.thomas@gmail.com> and Martin J. Wolfsegger
<wolfseggerm@gmx.at>
Maintainer: Thomas Jaki <jaki.thomas@gmail.com>
Diff between PK versions 1.3-2 dated 2013-08-09 and 1.3-3 dated 2016-01-06
DESCRIPTION | 13 +++++-------- MD5 | 8 ++++---- NAMESPACE | 12 ++++++++++++ inst/CITATION | 4 ++-- inst/NEWS | 5 +++++ 5 files changed, 28 insertions(+), 14 deletions(-)
Title: Non-Parametric Trend Tests and Change-Point Detection
Description: The analysis of environmental data often requires
the detection of trends and change-points.
This package provides the Mann-Kendall Trend Test,
seasonal Mann-Kendall Test,
correlated seasonal Mann-Kendall Test,
partial Mann-Kendall Trend test,
(Seasonal) Sen's slope, partial correlation trend test and
change-point test after Pettitt.
Author: Thorsten Pohlert
Maintainer: Thorsten Pohlert <thorsten.pohlert@gmx.de>
Diff between trend versions 0.0.2 dated 2015-11-12 and 0.1.0 dated 2016-01-06
trend-0.0.2/trend/COPYING |only trend-0.1.0/trend/DESCRIPTION | 8 ++-- trend-0.1.0/trend/MD5 | 47 ++++++++++++++------------- trend-0.1.0/trend/NAMESPACE | 10 +---- trend-0.1.0/trend/R/cs.test.R |only trend-0.1.0/trend/R/csmk.test.R | 19 ++++++++++ trend-0.1.0/trend/R/mk.test.R | 18 ++++++++++ trend-0.1.0/trend/R/multivar.MK.test.R | 17 +++++++++ trend-0.1.0/trend/R/partial.cor.trend.test.R | 17 +++++++++ trend-0.1.0/trend/R/pettitt.test.R | 18 ++++++++++ trend-0.1.0/trend/R/print.trend.test.R | 17 +++++++++ trend-0.1.0/trend/R/sea.sens.slope.R | 17 +++++++++ trend-0.1.0/trend/R/sens.slope.R | 20 ++++++++++- trend-0.1.0/trend/R/smk.test.R | 19 ++++++++++ trend-0.1.0/trend/R/summary.trend.test.R | 17 +++++++++ trend-0.1.0/trend/R/wm.test.R |only trend-0.1.0/trend/build/vignette.rds |binary trend-0.1.0/trend/inst/NEWS.Rd | 17 +++++++++ trend-0.1.0/trend/inst/doc/trend.R | 18 +++++----- trend-0.1.0/trend/inst/doc/trend.Rnw | 2 + trend-0.1.0/trend/inst/doc/trend.pdf |binary trend-0.1.0/trend/man/cs.test.Rd |only trend-0.1.0/trend/man/pettitt.test.Rd | 1 trend-0.1.0/trend/man/trend-package.Rd | 37 +++++++++++++-------- trend-0.1.0/trend/man/wm.test.Rd |only trend-0.1.0/trend/src/pettitt.f90 | 2 - trend-0.1.0/trend/vignettes/trend.Rnw | 2 + 27 files changed, 263 insertions(+), 60 deletions(-)
Title: An Information About Deputies and Votings in Polish Diet from
Seventh to Eighth Term of Office
Description: Set of functions that access information about deputies and votings
in Polish diet from webpage <http://www.sejm.gov.pl/>. The package was developed
as a result of an internship in MI2 Group - <http://mi2.mini.pw.edu.pl/>,
Faculty of Mathematics and Information Science, Warsaw University of Technology.
Author: Piotr Smuda [aut, cre],
Przemyslaw Biecek [aut],
Tomasz Mikolajczyk [ctb]
Maintainer: Piotr Smuda <piotrsmuda@gmail.com>
Diff between sejmRP versions 1.2 dated 2015-10-23 and 1.3 dated 2016-01-06
DESCRIPTION | 20 +- MD5 | 174 +++++++++--------- NAMESPACE | 3 R/create_database.R | 66 +++--- R/deputies_add_new.R | 15 - R/deputies_create_table.R | 17 + R/deputies_get_data.R | 12 - R/deputies_get_ids.R | 14 - R/deputies_update_table.R | 19 + R/get_counter_table.R | 2 R/get_deputies_table.R | 8 R/get_filtered_votes.R | 41 +++- R/get_statements_table.R | 11 - R/get_votes_table.R | 9 R/get_votings_table.R | 11 - R/remove_database.R | 1 R/safe_html.R | 6 R/safe_readHTMLTable.R |only R/statements_create_table.R | 30 ++- R/statements_get_statements_data.R | 10 - R/statements_get_statements_table.R | 2 R/statements_update_table.R | 44 +++- R/votes_create_table.R | 28 +- R/votes_get_clubs_links.R | 6 R/votes_get_results.R | 16 + R/votes_match_deputies_ids.R | 17 + R/votes_update_table.R | 43 ++-- R/votings_create_table.R | 26 +- R/votings_get_meetings_links.R | 16 - R/votings_get_meetings_table.R | 10 - R/votings_get_votings_links.R | 6 R/votings_get_votings_table.R | 2 R/votings_update_table.R | 44 ++-- man/create_database.Rd | 37 ++- man/deputies_add_new.Rd | 10 - man/deputies_create_table.Rd | 8 man/deputies_get_data.Rd | 7 man/deputies_get_ids.Rd | 9 man/deputies_update_table.Rd | 8 man/get_deputies_table.Rd | 7 man/get_filtered_votes.Rd | 19 + man/get_statements_table.Rd | 8 man/get_votes_table.Rd | 7 man/get_votings_table.Rd | 10 - man/remove_database.Rd | 3 man/safe_html.Rd | 5 man/safe_readHTMLTable.Rd |only man/statements_create_table.Rd | 7 man/statements_get_statement.Rd | 5 man/statements_get_statements_data.Rd | 13 - man/statements_get_statements_table.Rd | 7 man/statements_update_table.Rd | 8 man/votes_create_table.Rd | 15 - man/votes_get_clubs_links.Rd | 9 man/votes_get_results.Rd | 6 man/votes_match_deputies_ids.Rd | 17 + man/votes_update_table.Rd | 17 - man/votings_create_table.Rd | 14 - man/votings_get_date.Rd | 5 man/votings_get_meetings_links.Rd | 15 - man/votings_get_meetings_table.Rd | 13 - man/votings_get_votings_links.Rd | 9 man/votings_get_votings_table.Rd | 7 man/votings_update_table.Rd | 13 - tests/testthat/test_!remove_database.R | 2 tests/testthat/test_create_database.R | 2 tests/testthat/test_deputies_create_table.R | 2 tests/testthat/test_deputies_get_data.R | 12 - tests/testthat/test_deputies_get_ids.R | 6 tests/testthat/test_deputies_update_table.R | 2 tests/testthat/test_get_deputies_table.R | 6 tests/testthat/test_get_filtered_table.R | 18 - tests/testthat/test_get_statements_table.R | 6 tests/testthat/test_get_votes_table.R | 6 tests/testthat/test_get_votings_table.R | 6 tests/testthat/test_statements_create_table.R | 2 tests/testthat/test_statements_get_statement.R | 2 tests/testthat/test_statements_get_statements_table.R | 2 tests/testthat/test_statements_update_table.R | 2 tests/testthat/test_votings_create_table.R | 3 tests/testthat/test_votings_get_date.R | 2 tests/testthat/test_votings_get_meetings_links.R | 4 tests/testthat/test_votings_get_meetings_table.R | 2 tests/testthat/test_votings_get_votings_links.R | 4 tests/testthat/test_votings_update_table.R | 3 tests/testthat/test_vottes_create_table.R | 4 tests/testthat/test_vottes_match_deputies_ids.R | 12 - tests/testthat/test_vottes_update_table.R | 4 vignettes/INSTRUCTION.Rmd | 105 ++++++---- 89 files changed, 713 insertions(+), 553 deletions(-)
Title: Tools for Working with Rotation Data
Description: Tools for working with rotational data, including
simulation from the most commonly used distributions on SO(3),
methods for different Bayes, mean and median type estimators for
the central orientation of a sample, confidence/credible
regions for the central orientation based on those estimators and
a novel visualization technique for rotation data. Most recently,
functions to identify potentially discordant (outlying) values
have been added.
Author: Bryan Stanfill <bstanfill2003@gmail.com>, Heike Hofmann
<hofmann@iastate.edu>, Ulrike Genschel <ulrike@iastate.edu>
Maintainer: Bryan Stanfill <bstanfill2003@gmail.com>
Diff between rotations versions 1.4 dated 2015-10-14 and 1.5 dated 2016-01-06
DESCRIPTION | 8 ++++---- LICENSE | 2 +- MD5 | 14 +++++++------- NAMESPACE | 3 ++- R/plot.R | 4 ++-- build/vignette.rds |binary inst/doc/rotations-intro.pdf |binary man/plot.SO3.Rd | 5 ++--- 8 files changed, 18 insertions(+), 18 deletions(-)
Title: A Survey Monkey R Client
Description: Programmatic access to the Survey Monkey API <https://developer.surveymonkey.com/>, which currently provides extensive functionality for monitoring surveys and retrieving survey results and some functionality for creating new surveys and data collectors.
Author: Thomas J. Leeper [aut, cre],
Kevin Little [ctb],
Stephan Renatus [ctb]
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>
Diff between Rmonkey versions 0.2.11 dated 2015-03-31 and 0.3.1 dated 2016-01-06
DESCRIPTION | 23 ++++++++---- MD5 | 56 +++++++++++++++---------------- NAMESPACE | 6 ++- NEWS | 22 +++++++++++- R/collectors.r | 7 ++- R/createcollector.r | 7 ++- R/createsurvey.r | 19 ++++++---- R/getresponses.r | 86 +++++++++++++++++++++++++++++++++--------------- R/respondentlist.r | 7 ++- R/responsecounts.r | 7 ++- R/smlogin.r | 2 - R/surveydetails.r | 26 ++++++++++++-- R/surveylist.r | 7 ++- R/templates.r | 7 ++- R/userdetails.r | 7 ++- README.md | 26 ++++++++++---- man/Rmonkey-package.Rd | 4 +- man/collectors.Rd | 4 +- man/createcollector.Rd | 4 +- man/createsurvey.Rd | 13 +++---- man/getresponses.Rd | 18 +++++++--- man/respondentlist.Rd | 4 +- man/responsecounts.Rd | 4 +- man/sm_login.Rd | 4 +- man/sm_response_list.Rd | 7 ++- man/surveydetails.Rd | 27 +++++++++++---- man/surveylist.Rd | 4 +- man/templates.Rd | 4 +- man/userdetails.Rd | 4 +- 29 files changed, 274 insertions(+), 142 deletions(-)
Title: Graphical User Interface for FactoMineR
Description: Rcmdr Plugin for the 'FactoMineR' package.
Author: Francois Husson, Julie Josse, Sebastien Le
Maintainer: Francois Husson <francois.husson@agrocampus-ouest.fr>
Diff between RcmdrPlugin.FactoMineR versions 1.5-0 dated 2014-08-28 and 1.6-0 dated 2016-01-06
DESCRIPTION | 10 +++++----- MD5 | 4 +++- inst/po/sl |only po/R-sl.po |only 4 files changed, 8 insertions(+), 6 deletions(-)
More information about RcmdrPlugin.FactoMineR at CRAN
Permanent link
Title: Calculate Pairwise Multiple Comparisons of Mean Rank Sums
Description: The Kruskal and Wallis one-way analysis of variance by ranks
or van der Waerden's normal score test can be employed,
if the data do not meet the assumptions
for one-way ANOVA. Provided that significant differences
were detected by the omnibus test, one may be interested
in applying post-hoc tests for pairwise multiple comparisons
(such as Nemenyi's test, Dunn's test, Conover's test,
van der Waerden's test). Similarly, one-way ANOVA with repeated
measures that is also referred to as ANOVA with unreplicated
block design can also be conducted via the Friedman-Test
or the Quade-test. The consequent post-hoc pairwise
multiple comparison tests according to Nemenyi, Conover and Quade
are also provided in this package. Finally Durbin's test for
a two-way balanced incomplete block design (BIBD) is also given
in this package.
Author: Thorsten Pohlert
Maintainer: Thorsten Pohlert <thorsten.pohlert@gmx.de>
Diff between PMCMR versions 4.0 dated 2015-12-07 and 4.1 dated 2016-01-06
DESCRIPTION | 8 ++--- MD5 | 48 ++++++++++++++++---------------- NAMESPACE | 1 R/dunn.test.control.R | 2 - R/durbin.test.R | 2 - R/jonckheere.test.R | 2 - R/posthoc.durbin.test.R | 2 - R/posthoc.friedman.conover.R | 2 - R/posthoc.friedman.nemenyi.test.R | 6 ++-- R/posthoc.kruskal.conover.R | 2 - R/posthoc.kruskal.dunn.test.R | 2 - R/posthoc.kruskal.nemenyi.test.R | 29 +++++++++++-------- R/posthoc.quade.test.R | 2 - R/posthoc.vanWaerden.test.R | 2 - R/print.PMCMR.R | 10 +++--- R/vanWaerden.test.R | 2 - build/vignette.rds |binary inst/NEWS.Rd | 15 ++++++++++ inst/doc/PMCMR.R | 52 +++++++++++++++++------------------ inst/doc/PMCMR.Rnw | 9 +++--- inst/doc/PMCMR.pdf |binary man/PMCMR-package.Rd | 4 +- man/posthoc.friedman.nemenyi.test.Rd | 22 +++++++++++++- man/posthoc.kruskal.nemenyi.test.Rd | 8 ----- vignettes/PMCMR.Rnw | 9 +++--- 25 files changed, 137 insertions(+), 104 deletions(-)
Title: Multivariate Meshes and Histograms in Arbitrary Dimensions
Description: Define, manipulate and plot meshes on simplices, spheres, balls, rectangles and tubes.
Directional and other multivariate histograms are provided.
Author: John P. Nolan
Maintainer: John P. Nolan <jpnolan@american.edu>
Diff between mvmesh versions 1.1 dated 2015-08-21 and 1.2 dated 2016-01-06
DESCRIPTION | 12 +- MD5 | 24 +++-- NAMESPACE | 13 +-- R/mvhist.R | 52 ++++++++++-- R/mvmesh-methods.R | 49 +++++++---- R/mvmesh.R | 205 ++++++++++++++++++++++++++++++++++++++++++-------- demo/00Index | 3 demo/mvhist.R | 25 +++++- demo/mvmesh.R | 2 demo/mvmeshmisc.R |only man/mvhist.Rd | 11 ++ man/mvmesh-geom.Rd | 5 + man/mvmesh-package.Rd | 26 +++--- man/mvmeshmisc.Rd |only 14 files changed, 327 insertions(+), 100 deletions(-)
Title: Classes and Methods for Seismic Data Analysis
Description: Provides classes and methods for seismic data analysis. The
base classes and methods are inspired by the python code found in
the 'ObsPy' python toolbox <http://github.com/obsypy/obspy>. Additional classes and
methods support data returned by web services provided by the 'IRIS DMC'
<http://service.iris.edu/>.
Author: Jonathan Callahan [aut, cre],
Rob Casey [aut],
Mary Templeton [aut]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>
Diff between IRISSeismic versions 1.0.5 dated 2015-07-21 and 1.0.7 dated 2016-01-06
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- R/Class-IrisClient.R | 20 +++++++++++--------- R/Class-Trace.R | 2 +- R/spectralUtils.R | 9 +++++---- build/vignette.rds |binary inst/doc/IRISSeismic-intro.pdf |binary man/IRISSeismic-package.Rd | 5 +++++ man/butterworth.Rd | 4 ++-- 9 files changed, 37 insertions(+), 29 deletions(-)
Title: Classification and Regression Training
Description: Misc functions for training and plotting classification and
regression models.
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams, Chris Keefer, Allan Engelhardt, Tony Cooper, Zachary Mayer,
Brenton Kenkel, the R Core Team, Michael Benesty, Reynald Lescarbeau,
Andrew Ziem, Luca Scrucca, Yuan Tang, and Can Candan.
Maintainer: Max Kuhn <Max.Kuhn@pfizer.com>
Diff between caret versions 6.0-62 dated 2015-11-23 and 6.0-64 dated 2016-01-06
.Rinstignore | 1 DESCRIPTION | 11 +++---- MD5 | 37 ++++++++++++++------------ R/adaptive.R | 2 + R/confusionMatrix.R | 3 +- R/dummyVar.R | 2 - R/modelLookup.R | 40 ++++++++-------------------- R/nearZeroVar.R | 42 +++++++++++++++++------------- R/preProcess.R | 14 +++++++++- R/predict.train.R | 47 ++++++++++++++++------------------ R/train.default.R | 4 ++ build/vignette.rds |binary inst/NEWS.Rd | 19 +++++++++++++ inst/models/models.RData |binary man/nearZeroVar.Rd | 10 ++++--- man/preProcess.Rd | 3 +- man/trainControl.Rd | 6 ++-- tests/testthat/preProcess_methods.R | 32 +++++++++++++++++++++++ tests/testthat/test_Dummies.R |only tests/testthat/test_confusionMatrix.R | 2 - tests/testthat/test_glmnet_varImp.R |only vignettes/algorithm.tex |only 22 files changed, 170 insertions(+), 105 deletions(-)
Title: Core Methods and Classes Used by 'aroma.*' Packages Part of the
Aroma Framework
Description: Core methods and classes used by higher-level aroma.* packages
part of the Aroma Project, e.g. aroma.affymetrix and aroma.cn.
Author: Henrik Bengtsson [aut, cre, cph],
Mark Robinson [ctb],
Ken Simpson [ctb]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between aroma.core versions 2.14.0 dated 2015-10-21 and 3.0.0 dated 2016-01-06
DESCRIPTION | 17 - MD5 | 72 ++-- NAMESPACE | 11 NEWS | 13 R/999.DEPRECATED.R | 61 ---- R/AromaMicroarrayDataSet.ATTRS.R | 4 R/AromaMicroarrayTabularBinaryFile.R | 4 R/AromaTabularBinaryFile.R | 4 R/AromaTabularBinarySet.ATTRS.R | 5 R/AromaTransform.R | 9 R/AromaUflFile.R | 3 R/AromaUgpFile.R | 3 R/AromaUnitChromosomeTabularBinaryFile.R | 15 - R/AromaUnitGcContentFile.R | 7 R/CopyNumberChromosomalModel.plotChromosomesLayers.R | 2 R/CopyNumberChromosomalModel.plotFitLayers.R | 2 R/CopyNumberChromosomalModel.plotSampleLayers.R | 2 R/CopyNumberSegmentationModel.R | 283 ++++++++++--------- R/ProbePositionEffects.R | 6 R/SampleAnnotationFile.R | 5 R/TextUnitNamesFile.R | 4 R/findAnnotationData.R | 2 R/mergeBoxplotStats.list.R | 12 man/AromaMicroarrayDataSet.Rd | 2 man/AromaTabularBinarySet.Rd | 2 man/AromaUnitCallSet.Rd | 2 man/AromaUnitFracBCnBinarySet.Rd | 2 man/AromaUnitGenotypeCallSet.Rd | 2 man/AromaUnitPscnBinarySet.Rd | 2 man/AromaUnitSignalBinarySet.Rd | 2 man/AromaUnitTotalCnBinarySet.Rd | 2 man/Non-documented_objects.Rd | 11 man/RawMirroredAlleleBFractions.Rd | 2 man/RawSequenceReads.Rd | 2 man/SegmentedAlleleBFractions.Rd | 2 man/SegmentedCopyNumbers.Rd | 2 man/mergeBoxplotStats.list.Rd | 36 +- 37 files changed, 290 insertions(+), 327 deletions(-)