Title: Optimal Discriminating Designs
Description: A collection of functions for numerical construction of optimal discriminating designs. At the current moment T-optimal designs (which maximize the lower bound for the power of F-test for regression model discrimination), KL-optimal designs (for lognormal errors) and their robust analogues can be calculated with the package.
Author: Roman Guchenko [aut, cre]
Maintainer: Roman Guchenko <RomanGuchenko@yandex.ru>
Diff between rodd versions 0.1-1 dated 2014-12-13 and 0.2-1 dated 2016-01-11
DESCRIPTION | 9 +-- MD5 | 62 +++++++++++++++++---------- NAMESPACE | 6 ++ R/KLD.R |only R/KLD.new.R |only R/KLopt.lnorm.R |only R/KLp.R |only R/Tfs.R | 7 +-- R/Tp.R | 15 +++--- R/evaluate.local.maximums.lnorm.R |only R/evaluate.weights.1.R | 87 +++++++++++++++++++------------------- R/evaluate.weights.1.lnorm.R |only R/evaluate.weights.2.R | 13 +---- R/evaluate.weights.2.lnorm.R |only R/g.R |only R/klopt.lnorm.main.R |only R/mu.R |only R/num.deriv.R | 2 R/plot.KLopt.lnorm.R |only R/plot.tpopt.R | 15 +++--- R/print.KLopt.lnorm.R |only R/print.tpopt.R | 23 ++++------ R/psi.R | 7 +-- R/psi.lnorm.R |only R/psi.lnorm.new.R |only R/psi.lnorm_1.R |only R/psi_1.R | 15 +++--- R/second.order.num.deriv.R | 2 R/summary.KLopt.lnorm.R |only R/summary.tpopt.R | 41 ++++++++--------- R/topt.R | 27 ++++++----- R/tpopt.R | 11 ++-- R/w_.R | 11 ++-- man/KLopt.lnorm.Rd |only man/plot.KLopt.lnorm.Rd |only man/plot.tpopt.Rd | 2 man/print.KLopt.lnorm.Rd |only man/print.tpopt.Rd | 2 man/rodd-package.Rd | 4 + man/summary.KLopt.lnorm.Rd |only man/summary.tpopt.Rd | 2 man/tpopt.Rd | 46 ++++++++++++++++++++ 42 files changed, 238 insertions(+), 171 deletions(-)
Title: Dynamic (Longitudinal) Network Datasets
Description: A collection of dynamic network data sets from various sources and multiple authors represented as 'networkDynamic'-formatted objects.
Author: Skye Bender-deMoll [cre],
Martina Morris [ctb],
Li Wang [ctb],
Gerhard van de Bunt [ctb],
Goele Bossaert [ctb],
Nadine Meidert [ctb],
SocioPatterns.org [ctb],
Tore Opsahi [ctb],
Radoslaw Michalski, (et al) [ctb],
Allison Davis, (et. al.) [ctb],
C.E. Priebe, (et. al.) [ctb]
Maintainer: Skye Bender-deMoll <skyebend@uw.edu>
Diff between networkDynamicData versions 0.1.0 dated 2014-02-07 and 0.2.1 dated 2016-01-11
ChangeLog |only DESCRIPTION | 39 ++++++++++++++---- LICENSE | 2 MD5 | 21 +++++++--- data/concurrencyComparisonNets.rda |binary data/datalist |only data/davisActorsDyn.rda |only data/davisDyn.rda |only data/enronEmails.rda |only data/manufacturingEmails.rda |only man/concurrencyComparisonNets.Rd | 77 ++++++++++++++++++++----------------- man/davisDyn.Rd |only man/enronEmails.Rd |only man/hospital.Rd | 4 - man/manufacturingEmails.Rd |only man/networkDynamicData-package.Rd | 19 ++++----- 16 files changed, 100 insertions(+), 62 deletions(-)
More information about networkDynamicData at CRAN
Permanent link
Title: Tools for Analyzing Finite Mixture Models
Description: A collection of R functions for analyzing finite mixture models. This package is based upon work supported by the National Science Foundation under Grant No. SES-0518772.
Author: Derek Young [aut, cre],
Tatiana Benaglia [aut],
Didier Chauveau [aut],
David Hunter [aut],
Ryan Elmore [ctb],
Thomas Hettmansperger [ctb],
Hoben Thomas [ctb],
Fengjuan Xuan [ctb]
Maintainer: Derek Young <derek.young@uky.edu>
Diff between mixtools versions 1.0.3 dated 2015-04-19 and 1.0.4 dated 2016-01-11
DESCRIPTION | 13 +- MD5 | 42 +++--- NAMESPACE | 13 +- NEWS | 9 + R/multmixmodelsel.R | 2 R/mvnpEM.R |only build/vignette.rds |binary inst/doc/mixtools.pdf |binary man/multmixmodel.sel.Rd | 2 man/mvnpEM.Rd |only man/normalmixEM.Rd | 300 +++++++++++++++++++++++----------------------- man/normalmixMMlc.Rd | 309 +++++++++++++++++++++++------------------------- man/npMSL.Rd | 8 - man/plot.mixEM.Rd | 161 ++++++++++++------------- man/plot.mvnpEM.Rd |only man/plotFDR.Rd | 10 - man/post.beta.Rd | 126 ++++++++++--------- man/print.mvnpEM.Rd |only man/regmixEM.mixed.Rd | 196 +++++++++++++++--------------- man/spEMsymloc.Rd | 2 man/spEMsymlocN01.Rd | 4 man/summary.mvnpEM.Rd |only man/summary.npEM.Rd | 6 man/wquantile.Rd | 6 src/mvwkde.c |only 25 files changed, 618 insertions(+), 591 deletions(-)
Title: Multivariate Data Handling in Ecology and Biogeography
Description: A framework package aimed to provide standardized computational environment for specialist work via object classes to represent the data coded by samples, taxa and segments (i.e. subpopulations, repeated measures). It supports easy processing of the data along with cross tabulation and relational data tables for samples and taxa. An object of class `mefa' is a project specific compendium of the data and can be easily used in further analyses. Methods are provided for extraction, aggregation, conversion, plotting, summary and reporting of `mefa' objects. Reports can be generated in plain text or LaTeX format. Vignette contains worked examples.
Author: Peter Solymos
Maintainer: Peter Solymos <solymos@ualberta.ca>
Diff between mefa versions 3.2-6 dated 2015-11-22 and 3.2-7 dated 2016-01-11
DESCRIPTION | 8 MD5 | 212 +++---- NAMESPACE | 180 +++--- R/aggregate.mefa.R | 114 +-- R/aoplot.R | 2 R/aoplot.default.R | 36 - R/as.array.mefa.R | 18 R/as.data.frame.mefa.R | 24 R/as.data.frame.stcs.R | 22 R/as.list.mefa.R | 20 R/as.matrix.mefa.R | 12 R/as.mefa.R | 12 R/as.mefa.array.R | 36 - R/as.mefa.default.R | 38 - R/as.mefa.list.R | 40 - R/as.stcs.R | 12 R/as.stcs.default.R | 6 R/boxplot.mefa.R | 68 +- R/boxplot.stcs.R | 12 R/cdrop.R | 38 - R/coercionMethodsForMefa4.R | 110 +-- R/dim.mefa.R | 16 R/dimnames.mefa.R | 22 R/extract.mefa.R | 182 +++--- R/fill.na.R | 46 - R/image.dist.R | 60 +- R/image.mefa.R | 90 +-- R/image.stcs.R | 14 R/is.dist.R | 6 R/is.mefa.R | 12 R/is.stcs.R | 12 R/label.R | 28 R/mat2list.R | 26 R/mefa.R | 132 ++-- R/mefaCheck.R | 116 +-- R/mefaCompare.R | 90 +-- R/mefaCrosstab.R | 76 +- R/mefaNestedless.R | 40 - R/mefaTables.R | 112 +-- R/mefadocs.R | 32 - R/mefalogo.R | 82 +- R/mefaweb.R | 12 R/melt.R | 12 R/melt.mefa.R | 230 +++---- R/mfill.R | 4 R/msr.R | 28 R/mss.R | 36 - R/mtr.R | 34 - R/mts.R | 36 - R/plot.mefa.R | 152 ++--- R/plot.stcs.R | 12 R/print.mefa.R | 58 - R/print.summary.mefa.R | 58 - R/qvector.R | 22 R/rdrop.R | 38 - R/rep.data.frame.R | 6 R/report.R | 12 R/report.mefa.R | 534 +++++++++--------- R/samp.R | 4 R/samp.default.R | 20 R/segm.R | 4 R/segm.default.R | 20 R/stack.dist.R | 46 - R/stcs.R | 172 ++--- R/summary.mefa.R | 46 - R/summary.stcs.R | 18 R/taxa.R | 4 R/taxa.default.R | 18 R/vec2dist.R | 24 R/xtab.R | 4 R/xtab.default.R | 10 R/zzz.R | 22 build/vignette.rds |binary demo/00Index | 2 demo/mefa.R | 488 ++++++++-------- inst/CITATION | 38 - inst/ChangeLog | 824 ++++++++++++++------------- inst/SampleReport | 80 +- inst/doc/mefa.R | 732 ++++++++++++------------ inst/doc/mefa.Rnw | 1304 ++++++++++++++++++++++---------------------- inst/doc/mefa.pdf |binary man/aggregate.mefa.Rd | 172 ++--- man/aoplot.Rd | 92 +-- man/as.mefa.Rd | 204 +++--- man/dolina.Rd | 118 +-- man/fill.na.Rd | 86 +- man/image.dist.Rd | 84 +- man/label.Rd | 90 +-- man/mat2list.Rd | 138 ++-- man/mefa.Rd | 298 +++++----- man/mefaCheck.Rd | 86 +- man/mefaCrosstab.Rd | 94 +-- man/mefaNestedless.Rd | 70 +- man/mefaTables.Rd | 96 +-- man/mefadocs.Rd | 50 - man/mefalogo.Rd | 84 +- man/mefaweb.Rd | 58 - man/melt.mefa.Rd | 144 ++-- man/plot.mefa.Rd | 212 +++---- man/qvector.Rd | 86 +- man/rep.data.frame.Rd | 80 +- man/report.mefa.Rd | 154 ++--- man/stack.dist.Rd | 136 ++-- man/stcs.Rd | 176 ++--- tests/tests.R | 4 vignettes/mefa.Rnw | 1304 ++++++++++++++++++++++---------------------- vignettes/mefa.bib | 452 +++++++-------- 107 files changed, 5979 insertions(+), 5967 deletions(-)
Title: Pacific Decadal Oscillation Index
Description: Monthly Pacific Decadal Oscillation (PDO) index
values from January 1900 to present.
Author: Joe Thorley [aut, cre],
Nathan Mantua [aut, dtc],
Steven R. Hare [aut, dtc]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between rpdo versions 0.1.0 dated 2015-10-19 and 0.1.1 dated 2016-01-11
DESCRIPTION | 16 +++++++++------- MD5 | 20 +++++++++++++------- NAMESPACE | 2 ++ NEWS.md | 4 ++++ R/data.R | 31 +++---------------------------- README.md | 38 ++++++++++++++++++-------------------- build |only data/pdo.rda |binary inst |only man/pdo.Rd | 33 ++++----------------------------- tests |only vignettes |only 12 files changed, 53 insertions(+), 91 deletions(-)
Title: Semi-Supervised Generalized Structural Equation Modeling
Description: Conducts a semi-gSEM statistical analysis (semi-supervised generalized structural equation modeling) on a data frame of coincident observations of multiple predictive or intermediate variables and a final continuous, outcome variable, via two functions sgSEMp1() and sgSEMp2(), representing fittings based on two statistical principles. Principle 1 determines all sensible univariate relationships in the spirit of the Markovian process. The relationship between each pair of variables, including predictors and the final outcome variable, is determined with the Markovian property that the value of the current predictor is sufficient in relating to the next level variable, i.e., the relationship is independent of the specific value of the preceding-level variables to the current predictor, given the current value. Principle 2 resembles the multiple regression principle in the way multiple predictors are considered simultaneously. Specifically, the relationship of the first-level predictors (such as Time and irradiance etc) to the outcome variable (such as, module degradation or yellowing) is fit by a supervised additive model. Then each significant intermediate variable is taken as the new outcome variable and the other variables (except the final outcome variable) as the predictors in investigating the next-level multivariate relationship by a supervised additive model. This fitting process is continued until all sensible models are investigated.
Author: Junheng Ma <jxm216@case.edu>, Nicholas Wheeler <nrw16@case.edu>, Yifan Xu <ethan.yifanxu@case.edu>, Wenyu Du <wxd97@case.edu>, Abdulkerim Gok <axg515@case.edu>, Jiayang Sun <jiayang.sun@case.edu>
Maintainer: Junheng Ma <jxm216@case.edu>
Diff between gSEM versions 0.4.3.3 dated 2015-12-23 and 0.4.3.4 dated 2016-01-11
DESCRIPTION | 10 +- MD5 | 30 +++---- R/acrylic.R | 17 ++-- R/cf.R | 5 - R/gSEM.R | 7 + R/genInit.R | 2 R/nlsR2.R | 1 R/path.R | 3 R/plot.sgSEMp2.R | 198 ++++++++++++++++++++++++---------------------------- R/plotAll.R | 1 R/sgSEMp2.R | 194 +++++++++++++++++++++++++++----------------------- man/gSEM.Rd | 6 - man/genInit.Rd | 3 man/path.Rd | 3 man/plot.sgSEMp2.Rd | 4 - man/sgSEMp2.Rd | 15 +++ 16 files changed, 256 insertions(+), 243 deletions(-)
Title: Permutation Significance for Random Forests
Description: Estimate False Discovery Rates (FDRs) for importance metrics from
random forest runs.
Author: Ankur Chakravarthy
Maintainer: Ankur Chakravarthy <ankur.chakravarthy.10@ucl.ac.uk>
Diff between pRF versions 1.1 dated 2015-11-05 and 1.2 dated 2016-01-11
DESCRIPTION | 15 +++++++++------ MD5 | 6 +++--- NAMESPACE | 19 +++++++++++-------- R/AC_pRF.R | 15 +++++++++++---- 4 files changed, 34 insertions(+), 21 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-12-13 0.3.2
2013-11-26 0.3.1
Title: Unit Root and Cointegration Tests for Time Series Data
Description: Unit root and cointegration tests encountered in applied
econometric analysis are implemented.
Author: Bernhard Pfaff [aut, cre],
Eric Zivot [ctb],
Matthieu Stigler [ctb]
Maintainer: Bernhard Pfaff <bernhard@pfaffikus.de>
Diff between urca versions 1.2-8 dated 2013-06-06 and 1.2-9 dated 2016-01-11
DESCRIPTION | 26 +++++++++++++------------- MD5 | 36 ++++++++++++++++++------------------ NAMESPACE | 42 ++++++++++++++++++++---------------------- R/internal.R | 4 ++-- data/Raotbl1.rda |binary data/Raotbl2.rda |binary data/Raotbl3.rda |binary data/Raotbl4.rda |binary data/Raotbl5.rda |binary data/Raotbl6.rda |binary data/Raotbl7.rda |binary data/UKconinc.rda |binary data/UKconsumption.rda |binary data/UKpppuip.rda |binary data/denmark.rda |binary data/ecb.rda |binary data/finland.rda |binary data/npext.rda |binary data/nporg.rda |binary 19 files changed, 53 insertions(+), 55 deletions(-)
Title: Log-Gaussian Cox Process
Description: Spatial and spatio-temporal modelling of point patterns using the
log-Gaussian Cox process. Bayesian inference for spatial, spatiotemporal,
multivariate and aggregated point processes using Markov chain Monte Carlo.
Author: Benjamin M. Taylor, Tilman M. Davies, Barry S. Rowlingson, Peter J. Diggle. Additional
code contributions from Edzer Pebesma.
Maintainer: Benjamin M. Taylor <b.taylor1@lancaster.ac.uk>
Diff between lgcp versions 1.3-13 dated 2015-11-19 and 1.3-14 dated 2016-01-11
DESCRIPTION | 10 +++--- MD5 | 24 +++++++-------- NAMESPACE | 16 +++++----- R/MultitypeSpatialOnlyPlusParameters.R | 10 +++--- R/gridFunctionMethods.R | 32 ++++++++++----------- R/lgcp.R | 5 +-- R/lgcpMethods.R | 50 ++++++++++++++++----------------- R/lgcpStructures.R | 18 +++++------ build/vignette.rds |binary data/wpopdata.rda |binary data/wtowncoords.rda |binary data/wtowns.rda |binary inst/doc/lgcp.pdf |binary 13 files changed, 83 insertions(+), 82 deletions(-)
Title: Interface to Climatic Research Unit Time-Series Version 3.21
Data
Description: Functions for reading in and manipulating CRU TS3.21: Climatic Research Unit (CRU) Time-Series (TS) Version 3.21 data.
Author: Benjamin M. Taylor
Maintainer: Benjamin M. Taylor <b.taylor1@lancaster.ac.uk>
Diff between cruts versions 0.1 dated 2015-07-11 and 0.2 dated 2016-01-11
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NAMESPACE | 16 ++++++++-------- R/cruts.R | 3 ++- R/import-export.R | 6 +++--- 5 files changed, 21 insertions(+), 20 deletions(-)
Title: R Wrapper Around the Telegram Bot API
Description: R wrapper around the Telegram Bot API (http://core.telegram.org/bots/api) to access Telegram's messaging facilities with ease (e.g. you send messages, images, files from R to your smartphone).
Author: Luca Braglia [aut, cre]
Maintainer: Luca Braglia <lbraglia@gmail.com>
Diff between telegram versions 0.3.0 dated 2015-12-29 and 0.4.0 dated 2016-01-11
DESCRIPTION | 8 - MD5 | 27 +++- NAMESPACE | 4 R/TGBot.R | 292 ++++++++++++++++++++++++++++++++++++-------- R/telegram-package.r | 4 README.md | 9 + man/TGBot.Rd | 35 ++--- man/bot_token.Rd | 8 - man/forwardMessage.Rd |only man/getFile.Rd |only man/getMe.Rd |only man/getUpdates.Rd |only man/getUserProfilePhotos.Rd |only man/sendAudio.Rd |only man/sendDocument.Rd |only man/sendLocation.Rd |only man/sendMessage.Rd |only man/sendPhoto.Rd |only man/sendSticker.Rd |only man/sendVideo.Rd |only man/sendVoice.Rd |only 21 files changed, 305 insertions(+), 82 deletions(-)
Title: Robust Fitting of Linear Model
Description: Robust fitting of linear model which can take response in matrix form.
Author: Oleg Yegorov <egorov@smedx.com>
Maintainer: Oleg Yegorov <egorov@smedx.com>
Diff between rlm versions 1.1 dated 2015-02-21 and 1.2 dated 2016-01-11
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NAMESPACE | 1 + R/rlm.r | 10 +++++----- src/IWLS.cpp | 16 ++++++++-------- 5 files changed, 22 insertions(+), 21 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-11-29 1.6.9
2014-08-25 1.6.8
2014-06-16 1.6.7
2011-09-02 1.6.6
2011-01-10 1.6.5
2010-07-30 1.6.2
2010-07-30 1.6.3
2010-05-17 1.6.1
2006-07-10 1.6
Title: Soil Physical Analysis
Description: Basic and model-based soil physical analyses.
Author: Anderson Rodrigo da Silva, Renato Paiva de Lima
Maintainer: Anderson Rodrigo da Silva <anderson.agro@hotmail.com>
Diff between soilphysics versions 2.4 dated 2015-06-26 and 3.0 dated 2016-01-11
DESCRIPTION | 11 ++++--- MD5 | 27 ++++++++++--------- NAMESPACE | 3 -- NEWS | 7 +++++ R/criticalmoisture.R | 2 - R/iwc.R | 4 +- R/llwr.R | 51 +++++++++++++++++------------------- data/skp1994.rda |binary inst |only man/fitlbc.Rd | 2 - man/fitsoilwater4.Rd | 4 +- man/iwc.Rd | 8 ++--- man/llwr.Rd | 46 ++++++++++++++++---------------- man/skp1994.Rd | 8 ++--- man/soilphysics-package.Rd | 63 +++++---------------------------------------- 15 files changed, 97 insertions(+), 139 deletions(-)
Title: Neo4j Driver for R
Description: Neo4j, a graph database, allows users to store their data as a property graph. A graph consists of nodes that are connected by relationships; both nodes and relationships can have properties, or key-value pairs. RNeo4j is Neo4j's R driver. It allows users to read and write data from and to Neo4j directly from their R environment by exposing an interface for interacting with nodes, relationships, paths, and more. Most notably, it allows users to retrieve Cypher query results as R data frames, where Cypher is Neo4j's graph query language. Visit <http://www.neo4j.com> to learn more about Neo4j.
Author: Nicole White
Maintainer: Nicole White <nicole@neo4j.com>
Diff between RNeo4j versions 1.6.1 dated 2015-11-30 and 1.6.2 dated 2016-01-11
DESCRIPTION | 8 ++++---- MD5 | 11 +++++++---- R/internal.R | 22 ++++++++++++++++++---- man/getConstraint.Rd | 2 +- man/getIndex.Rd | 2 +- tests/test.sh |only tests/test_all.sh |only tests/testthat/test-internals.R |only 8 files changed, 31 insertions(+), 14 deletions(-)
Title: Tools for Analysis, Design, and Operation of Water Supply
Storages
Description: Measure single-storage water supply system performance using resilience,
reliability, and vulnerability metrics; assess storage-yield-reliability
relationships; determine no-fail storage with sequent peak analysis; optimize
release decisions for water supply, hydropower, and multi-objective reservoirs
using deterministic and stochastic dynamic programming; evaluate inflow
persistence using the Hurst coefficient.
Author: Sean Turner [aut, cre],
Jia Yi Ng [aut],
Stefano Galelli [aut]
Maintainer: Sean Turner <swd.turner@gmail.com>
Diff between reservoir versions 1.1.0 dated 2016-01-04 and 1.1.1 dated 2016-01-11
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/reservoir.R | 4 +++- R/sequent_peak_analysis.R | 4 ++-- man/Rippl.Rd | 2 +- man/reservoir.Rd | 4 +++- 6 files changed, 17 insertions(+), 13 deletions(-)
Title: Quantitative Analysis of Textual Data
Description: A fast, flexible toolset for for the management, processing, and
quantitative analysis of textual data in R.
Author: Kenneth Benoit [aut, cre],
Paul Nulty [aut],
Pablo Barberá [ctb],
Kohei Watanabe [ctb],
Benjamin Lauderdale [ctb]
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between quanteda versions 0.9.0-1 dated 2015-11-27 and 0.9.2-0 dated 2016-01-11
quanteda-0.9.0-1/quanteda/R/distance.R |only quanteda-0.9.2-0/quanteda/DESCRIPTION | 19 quanteda-0.9.2-0/quanteda/MD5 | 194 +- quanteda-0.9.2-0/quanteda/NAMESPACE | 17 quanteda-0.9.2-0/quanteda/NEWS | 40 quanteda-0.9.2-0/quanteda/R/RcppExports.R | 4 quanteda-0.9.2-0/quanteda/R/converters.R | 19 quanteda-0.9.2-0/quanteda/R/corpus.R | 25 quanteda-0.9.2-0/quanteda/R/dfm-classes.R | 136 - quanteda-0.9.2-0/quanteda/R/dfm-main.R | 23 quanteda-0.9.2-0/quanteda/R/dfm-methods.R | 247 --- quanteda-0.9.2-0/quanteda/R/dfm-weighting.R |only quanteda-0.9.2-0/quanteda/R/dictionaries.R | 129 - quanteda-0.9.2-0/quanteda/R/plots.R | 2 quanteda-0.9.2-0/quanteda/R/selectFeatures.R |only quanteda-0.9.2-0/quanteda/R/similarity.R |only quanteda-0.9.2-0/quanteda/R/stopwords.R | 451 ----- quanteda-0.9.2-0/quanteda/R/textfile.R | 89 - quanteda-0.9.2-0/quanteda/R/textmodel-generics.R | 11 quanteda-0.9.2-0/quanteda/R/textmodel-wordfish.R | 109 + quanteda-0.9.2-0/quanteda/R/textmodel-wordscores.R | 11 quanteda-0.9.2-0/quanteda/R/toLower.R | 6 quanteda-0.9.2-0/quanteda/R/tokenize.R | 4 quanteda-0.9.2-0/quanteda/R/wordstem.R | 20 quanteda-0.9.2-0/quanteda/build/vignette.rds |binary quanteda-0.9.2-0/quanteda/data/LBGexample.RData |binary quanteda-0.9.2-0/quanteda/inst/doc/LitVignette.R | 4 quanteda-0.9.2-0/quanteda/inst/doc/LitVignette.Rmd | 4 quanteda-0.9.2-0/quanteda/inst/doc/LitVignette.html | 17 quanteda-0.9.2-0/quanteda/inst/doc/quickstart.html | 1088 +++++++++++++- quanteda-0.9.2-0/quanteda/inst/extdata |only quanteda-0.9.2-0/quanteda/man/LBGexample.Rd | 2 quanteda-0.9.2-0/quanteda/man/applyDictionary.Rd | 18 quanteda-0.9.2-0/quanteda/man/cbind.dfm.Rd | 2 quanteda-0.9.2-0/quanteda/man/changeunits.Rd | 10 quanteda-0.9.2-0/quanteda/man/collocations.Rd | 46 quanteda-0.9.2-0/quanteda/man/convert.Rd | 36 quanteda-0.9.2-0/quanteda/man/corpus.Rd | 137 - 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Title: Testing Workbench for Precision-Recall Curves
Description: A testing workbench for evaluating Precision-Recall curves under various conditions.
Author: Takaya Saito [aut, cre],
Marc Rehmsmeier [aut]
Maintainer: Takaya Saito <takaya.saito@outlook.com>
Diff between prcbench versions 0.1.0 dated 2016-01-08 and 0.2.0 dated 2016-01-11
DESCRIPTION | 15 +- MD5 | 18 +-- R/main_benchmark.R | 44 ++++++-- README.md | 96 +++++++++++++---- inst/doc/introduction.R | 2 inst/doc/introduction.Rmd | 41 +++---- inst/doc/introduction.html | 66 +++++++----- man/run_benchmark.Rd | 7 + tests/testthat/test_main_benchmark.R | 190 ++++++++++++++++++++++++----------- vignettes/introduction.Rmd | 41 +++---- 10 files changed, 337 insertions(+), 183 deletions(-)
Title: A Fast, Flexible Tool for Sorting Phylogenetic Trees
Description: Screens and sorts phylogenetic trees in both traditional and
extended Newick format. Allows for the fast and flexible screening (within
a tree) of Exclusive clades that comprise only the target taxa and/or Non-
Exclusive clades that includes a defined portion of non-target taxa.
Author: Timothy Stephens [aut, cre, trl] (R port),
Debashish Bhattacharya [aut],
Mark Ragan [aut],
Cheong Xin Chan [aut, cph] (Original Perl implementation)
Maintainer: Timothy Stephens <timothy.stephens1@uqconnect.edu.au>
Diff between PhySortR versions 1.0.3 dated 2015-12-21 and 1.0.5 dated 2016-01-11
DESCRIPTION | 16 ++- MD5 | 10 +- NAMESPACE | 12 +- man/PhySortR.Rd | 68 +++++++------- man/convert.eNewick.Rd | 52 +++++------ man/sortTrees.Rd | 228 ++++++++++++++++++++++++------------------------- 6 files changed, 195 insertions(+), 191 deletions(-)
Title: Non-Parametric Measures of Actigraphy Data
Description: Computes interday stability (IS), intraday variability (IV) & the relative amplitude (RA) from actigraphy data as described in van Someren et al. (1999). Additionally, it also computes L5 (i.e. the 5 hours with lowest average actigraphy amplitude) and M10 (the 10 hours with highest average amplitude) as well as the respective start times. The flex versions will also compute the L-value for a user-defined number of minutes. IS describes the strength of coupling of a rhythm to supposedly stable zeitgebers. It varies between 0 (Gaussian Noise) and 1 for perfect IS. IV describes the fragmentation of a rhythm, i.e. the frequency and extent of transitions between rest and activity. It is near 0 for a perfect sine wave, about 2 for Gaussian noise and may be even higher when a definite ultradian period of about 2 hrs is present. RA is the relative amplitude of a rhythm. Note that to obtain reliable results, actigraphy data should cover a reasonable number of days.
Author: Christine Blume <christine.blume@sbg.ac.at>
Nayantara Santhi <n.santhi@surrey.ac.uk>
Manuel Schabus <manuel.schabus@sbg.ac.at>
Maintainer: Christine Blume <christine.blume@sbg.ac.at>
Diff between nparACT versions 0.1 dated 2015-10-22 and 0.2 dated 2016-01-11
DESCRIPTION | 10 ++++---- MD5 | 31 +++++++++++++------------- NAMESPACE | 4 +-- R/nparACT-internal.R |only R/nparACT_auxfunctions1.R | 4 +-- R/nparACT_auxfunctions2.R | 54 ++++++++++++++++++++++++++++++---------------- R/nparACT_base.R | 21 +++++++++++------ R/nparACT_base_loop.R | 27 ++++++++++++++++------- R/nparACT_flex.R | 17 ++++++++++---- R/nparACT_flex_loop.R | 23 ++++++++++++++----- data/sleepstudy.rda |binary man/nparACT-package.Rd | 6 ++--- man/nparACT_base.Rd | 2 - man/nparACT_base_loop.Rd | 2 - man/nparACT_flex.Rd | 2 - man/nparACT_flex_loop.Rd | 2 - man/sleepstudy.Rd | 6 ++--- 17 files changed, 133 insertions(+), 78 deletions(-)
Title: Aligned Rank Transform
Description: The Aligned Rank Transform for nonparametric
factorial ANOVAs as described by J. O. Wobbrock,
L. Findlater, D. Gergle, & J. J. Higgins, "The Aligned
Rank Transform for nonparametric factorial analyses
using only ANOVA procedures", CHI 2011.
Author: Matthew Kay [aut, cre],
Jacob O. Wobbrock [aut]
Maintainer: Matthew Kay <mjskay@uw.edu>
Diff between ARTool versions 0.9.5 dated 2015-06-01 and 0.10.0 dated 2016-01-11
DESCRIPTION | 21 + MD5 | 62 +++-- NAMESPACE | 36 ++- NEWS |only R/anova.art.R | 296 +++++++++++++++++------- R/art.R | 382 +++++++++++++++++++++++--------- R/artlm.R | 137 +++++++---- R/data.R |only R/flat.anova.R |only R/global.variables.R |only R/internal.R | 135 ++++++----- build |only data/Higgins1990Table1.RData |binary data/Higgins1990Table1.art.RData |binary data/Higgins1990Table5.RData |binary data/Higgins1990Table5.art.RData |binary data/HigginsABC.RData |binary data/HigginsABC.art.RData |binary data/InteractionTestData.RData |only inst/doc |only man/Higgins1990Table1.Rd | 81 +++--- man/Higgins1990Table1.art.Rd | 67 ++--- man/Higgins1990Table5.Rd | 92 ++++--- man/Higgins1990Table5.art.Rd | 67 ++--- man/HigginsABC.Rd | 72 +++--- man/HigginsABC.art.Rd | 85 +++---- man/InteractionTestData.Rd |only man/anova.art.Rd | 176 +++++++------- man/art.Rd | 252 ++++++++++++--------- man/artlm.Rd | 108 ++++----- man/summary.art.Rd | 82 +++--- tests/testthat/test.anova.art.R |only tests/testthat/test.art.R | 38 ++- tests/testthat/test.artlm.R | 32 ++ tests/testthat/test.parse.art.formula.R | 51 ++++ vignettes |only 36 files changed, 1399 insertions(+), 873 deletions(-)