Title: Web Application Framework for R
Description: Makes it incredibly easy to build interactive web
applications with R. Automatic "reactive" binding between inputs and
outputs and extensive pre-built widgets make it possible to build
beautiful, responsive, and powerful applications with minimal effort.
Author: Winston Chang [aut, cre],
Joe Cheng [aut],
JJ Allaire [aut],
Yihui Xie [aut],
Jonathan McPherson [aut],
RStudio [cph],
jQuery Foundation [cph] (jQuery library and jQuery UI library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/www/shared/jquery-AUTHORS.txt),
jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in
inst/www/shared/jqueryui/1.10.4/AUTHORS.txt),
Mark Otto [ctb] (Bootstrap library),
Jacob Thornton [ctb] (Bootstrap library),
Bootstrap contributors [ctb] (Bootstrap library),
Twitter, Inc [cph] (Bootstrap library),
Alexander Farkas [ctb, cph] (html5shiv library),
Scott Jehl [ctb, cph] (Respond.js library),
Stefan Petre [ctb, cph] (Bootstrap-datepicker library),
Andrew Rowls [ctb, cph] (Bootstrap-datepicker library),
Dave Gandy [ctb, cph] (Font-Awesome font),
Brian Reavis [ctb, cph] (selectize.js library),
Kristopher Michael Kowal [ctb, cph] (es5-shim library),
es5-shim contributors [ctb, cph] (es5-shim library),
Denis Ineshin [ctb, cph] (ion.rangeSlider library),
Sami Samhuri [ctb, cph] (Javascript strftime library),
SpryMedia Limited [ctb, cph] (DataTables library),
John Fraser [ctb, cph] (showdown.js library),
John Gruber [ctb, cph] (showdown.js library),
Ivan Sagalaev [ctb, cph] (highlight.js library),
R Core Team [ctb, cph] (tar implementation from R)
Maintainer: Winston Chang <winston@rstudio.com>
Diff between shiny versions 0.12.2 dated 2015-08-05 and 0.13.0 dated 2016-01-12
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shiny-0.13.0/shiny/inst/www/shared/jqueryui/README |only shiny-0.13.0/shiny/inst/www/shared/jqueryui/images |only shiny-0.13.0/shiny/inst/www/shared/jqueryui/index.html |only shiny-0.13.0/shiny/inst/www/shared/jqueryui/jquery-ui.css |only shiny-0.13.0/shiny/inst/www/shared/jqueryui/jquery-ui.js |only shiny-0.13.0/shiny/inst/www/shared/jqueryui/jquery-ui.min.css |only shiny-0.13.0/shiny/inst/www/shared/jqueryui/jquery-ui.min.js |only shiny-0.13.0/shiny/inst/www/shared/jqueryui/jquery-ui.structure.css |only shiny-0.13.0/shiny/inst/www/shared/jqueryui/jquery-ui.structure.min.css |only shiny-0.13.0/shiny/inst/www/shared/jqueryui/jquery-ui.theme.css |only shiny-0.13.0/shiny/inst/www/shared/jqueryui/jquery-ui.theme.min.css |only shiny-0.13.0/shiny/inst/www/shared/selectize/css/selectize.bootstrap3.css | 12 shiny-0.13.0/shiny/inst/www/shared/selectize/js/selectize.min.js | 6 shiny-0.13.0/shiny/inst/www/shared/shiny.js | 299 +++ shiny-0.13.0/shiny/inst/www/shared/shiny.js.map | 2 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shiny-0.13.0/shiny/man/shinyApp.Rd | 8 shiny-0.13.0/shiny/man/shinyDeprecated.Rd | 2 shiny-0.13.0/shiny/man/shinyServer.Rd | 5 shiny-0.13.0/shiny/man/shinyUI.Rd | 2 shiny-0.13.0/shiny/man/showReactLog.Rd | 2 shiny-0.13.0/shiny/man/sidebarLayout.Rd | 5 shiny-0.13.0/shiny/man/sidebarPanel.Rd | 2 shiny-0.13.0/shiny/man/sliderInput.Rd | 16 shiny-0.13.0/shiny/man/splitLayout.Rd | 4 shiny-0.13.0/shiny/man/stacktrace.Rd |only shiny-0.13.0/shiny/man/stopApp.Rd | 6 shiny-0.13.0/shiny/man/submitButton.Rd | 16 shiny-0.13.0/shiny/man/suppressDependencies.Rd |only shiny-0.13.0/shiny/man/tabPanel.Rd | 2 shiny-0.13.0/shiny/man/tableOutput.Rd | 2 shiny-0.13.0/shiny/man/tabsetPanel.Rd | 2 shiny-0.13.0/shiny/man/textInput.Rd | 22 shiny-0.13.0/shiny/man/textOutput.Rd | 2 shiny-0.13.0/shiny/man/titlePanel.Rd | 3 shiny-0.13.0/shiny/man/updateCheckboxGroupInput.Rd | 6 shiny-0.13.0/shiny/man/updateCheckboxInput.Rd | 6 shiny-0.13.0/shiny/man/updateDateInput.Rd | 8 shiny-0.13.0/shiny/man/updateDateRangeInput.Rd | 8 shiny-0.13.0/shiny/man/updateNumericInput.Rd | 6 shiny-0.13.0/shiny/man/updateRadioButtons.Rd | 6 shiny-0.13.0/shiny/man/updateSelectInput.Rd | 6 shiny-0.13.0/shiny/man/updateSliderInput.Rd | 6 shiny-0.13.0/shiny/man/updateTabsetPanel.Rd | 2 shiny-0.13.0/shiny/man/updateTextInput.Rd | 6 shiny-0.13.0/shiny/man/validate.Rd | 2 shiny-0.13.0/shiny/man/verbatimTextOutput.Rd | 2 shiny-0.13.0/shiny/man/verticalLayout.Rd | 4 shiny-0.13.0/shiny/man/viewer.Rd |only shiny-0.13.0/shiny/man/wellPanel.Rd | 2 shiny-0.13.0/shiny/man/withMathJax.Rd | 2 shiny-0.13.0/shiny/man/withProgress.Rd | 6 shiny-0.13.0/shiny/tests/test-encoding |only shiny-0.13.0/shiny/vignettes |only 215 files changed, 4910 insertions(+), 2158 deletions(-)
Title: Repulsive Text and Label Geoms for 'ggplot2'
Description:
Provides text and label geoms for 'ggplot2' that help to avoid overlapping
text labels. Labels repel away from each other and away from the data
points.
Author: Kamil Slowikowski [aut, cre]
Maintainer: Kamil Slowikowski <kslowikowski@fas.harvard.edu>
Diff between ggrepel versions 0.3 dated 2016-01-09 and 0.4 dated 2016-01-12
ggrepel-0.3/ggrepel/R/utils.R |only ggrepel-0.4/ggrepel/DESCRIPTION | 8 ggrepel-0.4/ggrepel/MD5 | 44 +-- ggrepel-0.4/ggrepel/NEWS | 26 ++ ggrepel-0.4/ggrepel/R/RcppExports.R | 8 ggrepel-0.4/ggrepel/R/geom-label-repel.R | 102 ++++--- ggrepel-0.4/ggrepel/R/geom-text-repel.R | 128 ++++------ ggrepel-0.4/ggrepel/R/ggrepel-package.R | 16 + ggrepel-0.4/ggrepel/README.md | 19 + ggrepel-0.4/ggrepel/inst/doc/ggrepel.R | 43 --- ggrepel-0.4/ggrepel/inst/doc/ggrepel.Rmd | 60 ++++ ggrepel-0.4/ggrepel/inst/doc/ggrepel.html | 79 ++++-- ggrepel-0.4/ggrepel/man/geom_text_repel.Rd | 28 +- ggrepel-0.4/ggrepel/man/ggrepel.Rd | 16 + ggrepel-0.4/ggrepel/man/intersect_line_rectangle.Rd | 4 ggrepel-0.4/ggrepel/src/RcppExports.cpp | 13 + ggrepel-0.4/ggrepel/src/repel_boxes.cpp | 119 +++++---- ggrepel-0.4/ggrepel/vignettes/figures/ggrepel/animated.gif |only ggrepel-0.4/ggrepel/vignettes/figures/ggrepel/geom_label_repel-1.png |binary ggrepel-0.4/ggrepel/vignettes/figures/ggrepel/geom_text_repel-1.png |binary ggrepel-0.4/ggrepel/vignettes/figures/ggrepel/geom_text_repel_options-1.png |binary ggrepel-0.4/ggrepel/vignettes/figures/ggrepel/volcano-1.png |only ggrepel-0.4/ggrepel/vignettes/genes.txt.bz2 |only ggrepel-0.4/ggrepel/vignettes/ggrepel.Rmd | 60 ++++ ggrepel-0.4/ggrepel/vignettes/ggrepel.md | 87 +++++- 25 files changed, 559 insertions(+), 301 deletions(-)
Title: Interface Between GRASS 7 Geographical Information System and R
Description: Interpreted interface between GRASS 7 geographical
information system and R, based on starting R from within the GRASS GIS
environment, or running free-standing R in a temporary GRASS location;
the package provides facilities for using all GRASS commands from the
R command line. This package may not be used for GRASS 6, for which
spgrass6 should be used.
Author: Roger Bivand [cre, aut],
Rainer Krug [ctb],
Markus Neteler [ctb],
Sebastian Jeworutzki [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between rgrass7 versions 0.1-3 dated 2015-10-12 and 0.1-4 dated 2016-01-12
ChangeLog | 1107 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++ DESCRIPTION | 11 MD5 | 14 R/AAA.R | 18 R/rgrass.R | 2 R/vect_link.R | 76 ++- R/xml1.R | 49 -- inst/ChangeLog | 41 ++ 8 files changed, 1224 insertions(+), 94 deletions(-)
Title: Parallel Programming Tools for 'Rcpp'
Description: High level functions for doing parallel programming with 'Rcpp'.
For example, the parallelFor() function can be used to convert the work of
a standard serial "for" loop into a parallel one and the parallelReduce()
function can be used for accumulating aggregate or other values.
Author: JJ Allaire [aut, cre],
Romain Francois [aut, cph],
Gregory Vandenbrouck [aut],
Marcus Geelnard [aut, cph] (TinyThread library,
http://tinythreadpp.bitsnbites.eu/),
RStudio [cph],
Intel [aut, cph] (Intel TBB library,
https://www.threadingbuildingblocks.org/),
Microsoft [cph]
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between RcppParallel versions 4.3.14 dated 2015-06-02 and 4.3.15 dated 2016-01-12
RcppParallel-4.3.14/RcppParallel/NEWS |only RcppParallel-4.3.15/RcppParallel/DESCRIPTION | 10 +++++----- RcppParallel-4.3.15/RcppParallel/MD5 | 6 +++--- RcppParallel-4.3.15/RcppParallel/inst/NEWS |only RcppParallel-4.3.15/RcppParallel/src/Makevars | 10 +++++++--- 5 files changed, 15 insertions(+), 11 deletions(-)
Title: Model-Based Clustering for Multivariate Partial Ranking Data
Description: Implementation of a model-based clustering algorithm for
ranking data. Multivariate rankings as well as partial rankings are taken
into account. This algorithm is based on an extension of the Insertion
Sorting Rank (ISR) model for ranking data, which is a meaningful and
effective model parametrized by a position parameter (the modal ranking,
quoted by mu) and a dispersion parameter (quoted by pi). The heterogeneity
of the rank population is modelled by a mixture of ISR, whereas conditional
independence assumption is considered for multivariate rankings.
Author: Quentin Grimonprez, Julien Jacques
Maintainer: Quentin Grimonprez <quentin.grimonprez@inria.fr>
Diff between Rankcluster versions 0.92.9 dated 2014-07-25 and 0.93.1 dated 2016-01-12
DESCRIPTION | 22 MD5 | 102 - NAMESPACE | 2 R/RankDistance.R | 266 ++- R/RankFunctions.R | 146 +- R/Rankcluster-package.R | 6 R/conversion.R | 400 ++--- R/criteria.R | 18 R/data.R | 8 R/mixtureSEM.R | 304 ++-- R/rankclust.R | 88 - R/resultClass.R | 395 ++--- R/test.R | 410 ++--- build/vignette.rds |binary data/APA.rda |binary data/big4.rda |binary data/eurovision.rda |binary data/quiz.rda |binary data/sports.rda |binary data/words.rda |binary inst/doc/Rankcluster.pdf |binary man/APA.Rd | 14 man/Output-class.Rd | 3 man/Rankclust-class.Rd | 4 man/Rankcluster-package.Rd | 10 man/big4.Rd | 14 man/convertRank.Rd | 3 man/criteria.Rd | 3 man/distCayley.Rd | 5 man/distHamming.Rd | 5 man/distKendall.Rd | 5 man/distSpearman.Rd | 5 man/eurovision.Rd | 18 man/frequence.Rd | 3 man/getter-methods.Rd | 5 man/khi2.Rd | 7 man/kullback.Rd | 9 man/probability.Rd | 11 man/quiz.Rd | 18 man/rankclust.Rd | 14 man/show-methods.Rd | 3 man/simulISR.Rd | 3 man/sports.Rd | 12 man/summary-methods.Rd | 5 man/unfrequence.Rd | 3 man/words.Rd | 10 src/RankCluster.cpp | 3148 ++++++++++++++++++++++----------------------- src/functions.cpp | 909 ++++++------ src/functions.h | 4 src/run.cpp | 229 +-- src/runFunctions.cpp | 4 src/test.cpp | 7 52 files changed, 3365 insertions(+), 3295 deletions(-)
Title: Visually Assessing the Specificity and Informativeness of Primer
Pairs
Description: Identifies potential target sequences for a given set of primers
and generates taxonomically annotated phylogenetic trees with the predicted
amplification products.
Author: Jim Hester
Maintainer: Jim Hester <james.f.hester@gmail.com>
Diff between primerTree versions 1.0.1 dated 2014-06-09 and 1.0.3 dated 2016-01-12
DESCRIPTION | 16 ++++++----- MD5 | 54 +++++++++++++++++++++------------------- NAMESPACE | 17 ++++++++++-- R/filterResults.R |only R/plot.R | 4 +- R/primerTree.R | 17 ++++++++---- R/search.R | 10 +++++-- R/sequence.R | 6 ++-- man/accession2gi.Rd | 3 +- man/bryophytes_trnL.Rd | 3 +- man/clustalo.Rd | 3 +- man/filter_seqs.Rd |only man/get_sequence.Rd | 3 +- man/get_sequences.Rd | 3 +- man/get_taxonomy.Rd | 3 +- man/gi2taxid.Rd | 3 +- man/identify.primerTree_plot.Rd | 3 +- man/layout_tree_ape.Rd | 3 +- man/mammals_16S.Rd | 3 +- man/plot.primerTree.Rd | 3 +- man/plot_tree.Rd | 15 +++++------ man/plot_tree_ranks.Rd | 9 +++--- man/primerTree.Rd | 3 +- man/primer_search.Rd | 3 +- man/search_primer_pair.Rd | 29 +++++++++++---------- man/seq_lengths.Rd |only man/seq_lengths.primerTree.Rd |only man/summary.primerTree.Rd | 3 +- man/tree_from_alignment.Rd | 8 ++++- src/read_dna.c | 8 ++--- 30 files changed, 143 insertions(+), 92 deletions(-)
Title: Multiple Comparisons Using Normal Approximation
Description: Multiple contrast tests and simultaneous confidence
intervals based on normal approximation. With implementations for
binomial proportions in a 2xk setting (risk difference and odds ratio),
poly-3-adjusted tumour rates, biodiversity indices (multinomial data)
and expected values under lognormal assumption. Approximative power
calculation for multiple contrast tests of binomial and Gaussian data.
Author: Frank Schaarschmidt [aut, cre], Daniel Gerhard [aut], Martin Sill [aut]
Maintainer: Frank Schaarschmidt <schaarschmidt@biostat.uni-hannover.de>
Diff between MCPAN versions 1.1-15 dated 2013-10-10 and 1.1-20 dated 2016-01-12
DESCRIPTION | 13 ++++++------- MD5 | 23 +++++++++++++---------- NAMESPACE | 41 ++++++++++++++++++++++++++++++++++++++++- R/multinomORci.R |only R/powerbinom.R | 14 +++++++------- R/powermcpn.R | 18 +++++++++--------- R/powermcpt.R | 19 ++++++++++--------- man/MCPAN-package.Rd | 6 +++--- man/binomORci.Rd | 4 ++-- man/multinomORci.Rd |only man/powerbinom.Rd | 4 +++- man/powermcpn.Rd | 4 +++- man/powermcpt.Rd | 1 + man/print.multinomORci.Rd |only 14 files changed, 97 insertions(+), 50 deletions(-)
Title: Manage, Analyse and Simulate Hyperspectral Data
Description: Transformation of reflectance spectra, calculation of vegetation indices and red edge parameters, spectral resampling for hyperspectral remote sensing, simulation of reflectance and transmittance using the leaf reflectance model PROSPECT and the canopy reflectance model PROSAIL.
Author: Lukas W. Lehnert [cre, aut],
Hanna Meyer [aut],
Joerg Bendix [aut]
Maintainer: Lukas W. Lehnert <lukaslehnert@googlemail.com>
Diff between hsdar versions 0.3.1 dated 2015-10-06 and 0.4.0 dated 2016-01-12
hsdar-0.3.1/hsdar/data/endmember_spectra.RData |only hsdar-0.3.1/hsdar/man/endmember_spectra.Rd |only hsdar-0.4.0/hsdar/ChangeLog | 34 hsdar-0.4.0/hsdar/DESCRIPTION | 13 hsdar-0.4.0/hsdar/MD5 | 118 +- hsdar-0.4.0/hsdar/NAMESPACE | 6 hsdar-0.4.0/hsdar/R/AAAClasses.R | 13 hsdar-0.4.0/hsdar/R/USGS_speclib.R |only hsdar-0.4.0/hsdar/R/blockwise_functions.R | 6 hsdar-0.4.0/hsdar/R/caret_createDataPartition.R |only hsdar-0.4.0/hsdar/R/caret_featurePlot.R |only hsdar-0.4.0/hsdar/R/caret_gafs.R |only hsdar-0.4.0/hsdar/R/caret_parameters.R |only hsdar-0.4.0/hsdar/R/caret_preProcess.R |only hsdar-0.4.0/hsdar/R/caret_rfe.R |only hsdar-0.4.0/hsdar/R/caret_safs.R |only hsdar-0.4.0/hsdar/R/caret_sbf.R |only hsdar-0.4.0/hsdar/R/caret_train.R |only hsdar-0.4.0/hsdar/R/caret_utils.R |only hsdar-0.4.0/hsdar/R/getFiniteNri.R |only hsdar-0.4.0/hsdar/R/nri.R | 7 hsdar-0.4.0/hsdar/R/nri_attributes.R |only hsdar-0.4.0/hsdar/R/nri_index.R |only hsdar-0.4.0/hsdar/R/nri_methods.R | 4 hsdar-0.4.0/hsdar/R/speclib.R | 16 hsdar-0.4.0/hsdar/R/speclib_bandnames.R | 9 hsdar-0.4.0/hsdar/R/speclib_index.R | 40 hsdar-0.4.0/hsdar/R/speclib_mask.R | 1 hsdar-0.4.0/hsdar/R/speclib_raster-methods.R |only hsdar-0.4.0/hsdar/R/speclib_spectra.R | 125 ++ hsdar-0.4.0/hsdar/build/hsdar.pdf |only hsdar-0.4.0/hsdar/build/vignette.rds |binary hsdar-0.4.0/hsdar/data/spectral_data.RData |binary hsdar-0.4.0/hsdar/inst/doc/References.pdf |binary hsdar-0.4.0/hsdar/inst/doc/hsdar-intro.Rnw | 172 +-- hsdar-0.4.0/hsdar/inst/doc/hsdar-intro.pdf |binary hsdar-0.4.0/hsdar/man/DistMat3D-methods.Rd | 4 hsdar-0.4.0/hsdar/man/Nri-class.Rd | 1 hsdar-0.4.0/hsdar/man/USGS.Rd |only hsdar-0.4.0/hsdar/man/applySpeclib.Rd | 4 hsdar-0.4.0/hsdar/man/attributes_speclib.Rd | 15 hsdar-0.4.0/hsdar/man/bdri.Rd | 2 hsdar-0.4.0/hsdar/man/caret_createDataPartition-methods.Rd |only hsdar-0.4.0/hsdar/man/caret_createFolds-methods.Rd |only hsdar-0.4.0/hsdar/man/caret_createResample-methods.Rd |only hsdar-0.4.0/hsdar/man/caret_featurePlot-methods.Rd |only hsdar-0.4.0/hsdar/man/caret_gafs.Rd |only hsdar-0.4.0/hsdar/man/caret_preProcess-methods.Rd |only hsdar-0.4.0/hsdar/man/caret_rfe.Rd |only hsdar-0.4.0/hsdar/man/caret_safs.Rd |only hsdar-0.4.0/hsdar/man/caret_setPredictor.Rd |only hsdar-0.4.0/hsdar/man/caret_setResponse.Rd |only hsdar-0.4.0/hsdar/man/caret_sfb.Rd |only hsdar-0.4.0/hsdar/man/caret_showCaretParameters.Rd |only hsdar-0.4.0/hsdar/man/caret_train-methods.Rd |only hsdar-0.4.0/hsdar/man/cor.test.normalized.ratio.index.Rd | 2 hsdar-0.4.0/hsdar/man/cut.specfeat.Rd | 2 hsdar-0.4.0/hsdar/man/define.features.Rd | 2 hsdar-0.4.0/hsdar/man/dist_speclib.Rd | 32 hsdar-0.4.0/hsdar/man/feature_properties.Rd | 2 hsdar-0.4.0/hsdar/man/getNRI.Rd | 2 hsdar-0.4.0/hsdar/man/glm.normalized.ratio.index.Rd | 2 hsdar-0.4.0/hsdar/man/normalized.ratio.index-methods.Rd | 7 hsdar-0.4.0/hsdar/man/normalized.ratio.index.best.perfomance.Rd | 2 hsdar-0.4.0/hsdar/man/plot.glm.normalized.ratio.index.Rd | 11 hsdar-0.4.0/hsdar/man/rededge.Rd | 2 hsdar-0.4.0/hsdar/man/specfeat.Rd | 4 hsdar-0.4.0/hsdar/man/speclib.Rd | 1 hsdar-0.4.0/hsdar/man/spectra.Rd | 31 hsdar-0.4.0/hsdar/man/spectral_data.Rd | 10 hsdar-0.4.0/hsdar/man/subset_speclib.Rd | 8 hsdar-0.4.0/hsdar/man/t.test.nri.Rd | 6 hsdar-0.4.0/hsdar/man/unmix.Rd | 40 hsdar-0.4.0/hsdar/vignettes/hsdar-intro.Rnw | 172 +-- hsdar-0.4.0/hsdar/vignettes/hsdar-intro.tex | 564 ++++------ hsdar-0.4.0/hsdar/vignettes/hsdar.bib | 8 76 files changed, 871 insertions(+), 629 deletions(-)
Title: Histogram-Valued Data Analysis
Description: In the framework of Symbolic Data Analysis, a relatively new
approach to the statistical analysis of multi-valued data, we consider
histogram-valued data, i.e., data described by univariate histograms. The
methods and the basic statistics for histogram-valued data are mainly based
on the L2 Wasserstein metric between distributions, i.e., a Euclidean metric
between quantile functions. The package contains unsupervised classification
techniques, least square regression and tools for histogram-valued data and for
histogram time series.
Author: Antonio Irpino [aut, cre]
Maintainer: Antonio Irpino <antonio.irpino@unina2.it>
Diff between HistDAWass versions 0.1.3 dated 2015-07-16 and 0.1.4 dated 2016-01-12
HistDAWass-0.1.3/HistDAWass/data/datalist |only HistDAWass-0.1.4/HistDAWass/DESCRIPTION | 24 - HistDAWass-0.1.4/HistDAWass/MD5 | 185 ++++------ HistDAWass-0.1.4/HistDAWass/NAMESPACE | 2 HistDAWass-0.1.4/HistDAWass/R/Met_HTS.R | 12 HistDAWass-0.1.4/HistDAWass/R/Met_MatH.R | 35 - HistDAWass-0.1.4/HistDAWass/R/Met_distributionH.R | 4 HistDAWass-0.1.4/HistDAWass/R/Plotting_with_ggplot.R | 7 HistDAWass-0.1.4/HistDAWass/R/Utility.R | 31 - HistDAWass-0.1.4/HistDAWass/man/Age_Pyramids_2014.Rd | 8 HistDAWass-0.1.4/HistDAWass/man/Agronomique.Rd | 4 HistDAWass-0.1.4/HistDAWass/man/BLOOD.Rd | 2 HistDAWass-0.1.4/HistDAWass/man/BloodBRITO.Rd | 2 HistDAWass-0.1.4/HistDAWass/man/Center.cell.MatH-methods.Rd | 4 HistDAWass-0.1.4/HistDAWass/man/China_Month.Rd | 4 HistDAWass-0.1.4/HistDAWass/man/China_Seas.Rd | 6 HistDAWass-0.1.4/HistDAWass/man/DouglasPeucker.Rd | 2 HistDAWass-0.1.4/HistDAWass/man/HTS-class.Rd | 2 HistDAWass-0.1.4/HistDAWass/man/HTS.exponential.smoothing.Rd | 4 HistDAWass-0.1.4/HistDAWass/man/HTS.moving.averages.Rd | 4 HistDAWass-0.1.4/HistDAWass/man/HTS.predict.knn.Rd | 18 HistDAWass-0.1.4/HistDAWass/man/HistDAWass-package.Rd | 16 HistDAWass-0.1.4/HistDAWass/man/MatH-class.Rd | 5 HistDAWass-0.1.4/HistDAWass/man/OzoneFull.Rd | 2 HistDAWass-0.1.4/HistDAWass/man/OzoneH.Rd | 2 HistDAWass-0.1.4/HistDAWass/man/RetHTS.Rd | 2 HistDAWass-0.1.4/HistDAWass/man/ShortestDistance.Rd | 2 HistDAWass-0.1.4/HistDAWass/man/TMatH-class.Rd | 2 HistDAWass-0.1.4/HistDAWass/man/TdistributionH-class.Rd | 4 HistDAWass-0.1.4/HistDAWass/man/WH.1d.PCA.Rd | 20 - HistDAWass-0.1.4/HistDAWass/man/WH.MultiplePCA.Rd | 6 HistDAWass-0.1.4/HistDAWass/man/WH.SSQ-methods.Rd | 10 HistDAWass-0.1.4/HistDAWass/man/WH.SSQ2-methods.Rd | 8 HistDAWass-0.1.4/HistDAWass/man/WH.bind-methods.Rd | 4 HistDAWass-0.1.4/HistDAWass/man/WH.bind.col-methods.Rd | 2 HistDAWass-0.1.4/HistDAWass/man/WH.bind.row-methods.Rd | 2 HistDAWass-0.1.4/HistDAWass/man/WH.correlation-methods.Rd | 10 HistDAWass-0.1.4/HistDAWass/man/WH.correlation2-methods.Rd | 8 HistDAWass-0.1.4/HistDAWass/man/WH.mat.prod-methods.Rd | 7 HistDAWass-0.1.4/HistDAWass/man/WH.mat.sum-methods.Rd | 8 HistDAWass-0.1.4/HistDAWass/man/WH.regression.GOF.Rd | 4 HistDAWass-0.1.4/HistDAWass/man/WH.regression.two.components.Rd | 18 HistDAWass-0.1.4/HistDAWass/man/WH.regression.two.components.predict.Rd | 4 HistDAWass-0.1.4/HistDAWass/man/WH.var.covar-methods.Rd | 10 HistDAWass-0.1.4/HistDAWass/man/WH.var.covar2-methods.Rd | 8 HistDAWass-0.1.4/HistDAWass/man/WH.vec.mean-methods.Rd | 4 HistDAWass-0.1.4/HistDAWass/man/WH.vec.sum-methods.Rd | 6 HistDAWass-0.1.4/HistDAWass/man/WH_2d_Adaptive_Kohonen_maps.Rd | 24 - HistDAWass-0.1.4/HistDAWass/man/WH_2d_Kohonen_maps.Rd | 26 - HistDAWass-0.1.4/HistDAWass/man/WH_adaptive.kmeans.Rd | 16 HistDAWass-0.1.4/HistDAWass/man/WH_adaptive_fcmeans.Rd | 2 HistDAWass-0.1.4/HistDAWass/man/WH_fcmeans.Rd | 8 HistDAWass-0.1.4/HistDAWass/man/WH_hclust.Rd | 10 HistDAWass-0.1.4/HistDAWass/man/WH_kmeans.Rd | 14 HistDAWass-0.1.4/HistDAWass/man/WassSqDistH-methods.Rd | 6 HistDAWass-0.1.4/HistDAWass/man/checkEmptyBins-methods.Rd | 4 HistDAWass-0.1.4/HistDAWass/man/compP-methods.Rd | 4 HistDAWass-0.1.4/HistDAWass/man/compQ-methods.Rd | 4 HistDAWass-0.1.4/HistDAWass/man/crwtransform-methods.Rd | 3 HistDAWass-0.1.4/HistDAWass/man/data2hist.Rd | 14 HistDAWass-0.1.4/HistDAWass/man/distributionH-class.Rd | 6 HistDAWass-0.1.4/HistDAWass/man/dotpW-methods.Rd | 5 HistDAWass-0.1.4/HistDAWass/man/extract-methods.Rd | 4 HistDAWass-0.1.4/HistDAWass/man/get.MatH.main.info-methods.Rd | 2 HistDAWass-0.1.4/HistDAWass/man/get.MatH.ncols-methods.Rd | 2 HistDAWass-0.1.4/HistDAWass/man/get.MatH.nrows-methods.Rd | 2 HistDAWass-0.1.4/HistDAWass/man/get.MatH.rownames-methods.Rd | 2 HistDAWass-0.1.4/HistDAWass/man/get.MatH.stats-methods.Rd | 4 HistDAWass-0.1.4/HistDAWass/man/get.MatH.varnames-methods.Rd | 2 HistDAWass-0.1.4/HistDAWass/man/get.distr-methods.Rd | 2 HistDAWass-0.1.4/HistDAWass/man/get.histo-methods.Rd | 2 HistDAWass-0.1.4/HistDAWass/man/get.m-methods.Rd | 2 HistDAWass-0.1.4/HistDAWass/man/get.s-methods.Rd | 2 HistDAWass-0.1.4/HistDAWass/man/is.registeredMH-methods.Rd | 8 HistDAWass-0.1.4/HistDAWass/man/kurtH-methods.Rd | 4 HistDAWass-0.1.4/HistDAWass/man/meanH-methods.Rd | 4 HistDAWass-0.1.4/HistDAWass/man/minus.Rd | 2 HistDAWass-0.1.4/HistDAWass/man/plot-HTS.Rd | 10 HistDAWass-0.1.4/HistDAWass/man/plot-MatH.Rd | 14 HistDAWass-0.1.4/HistDAWass/man/plot-TdistributionH.Rd | 8 HistDAWass-0.1.4/HistDAWass/man/plot-distributionH.Rd | 8 HistDAWass-0.1.4/HistDAWass/man/plotPredVsObs.Rd | 2 HistDAWass-0.1.4/HistDAWass/man/plot_errors.Rd | 4 HistDAWass-0.1.4/HistDAWass/man/plus-methods.Rd | 2 HistDAWass-0.1.4/HistDAWass/man/rQQ-methods.Rd | 4 HistDAWass-0.1.4/HistDAWass/man/register-methods.Rd | 10 HistDAWass-0.1.4/HistDAWass/man/registerMH-methods.Rd | 4 HistDAWass-0.1.4/HistDAWass/man/show-MatH-methods.Rd | 4 HistDAWass-0.1.4/HistDAWass/man/show-distributionH-methods.Rd | 4 HistDAWass-0.1.4/HistDAWass/man/skewH-methods.Rd | 4 HistDAWass-0.1.4/HistDAWass/man/stations_coordinates.Rd | 4 HistDAWass-0.1.4/HistDAWass/man/stdH-methods.Rd | 4 HistDAWass-0.1.4/HistDAWass/man/subsetHTS-methods.Rd | 2 HistDAWass-0.1.4/HistDAWass/man/times-methods.Rd | 2 94 files changed, 409 insertions(+), 405 deletions(-)
Title: Correlation and Regression Analyses for Randomized Response Data
Description: Univariate and multivariate methods to analyze
randomized response (RR) survey designs (e.g., Warner, S. L. (1965).
Randomized response: A survey technique for eliminating evasive answer
bias. Journal of the American Statistical Association, 60, 63–69).
Besides univariate estimates of true proportions, RR variables can be used
for correlations, as dependent variable in a logistic regression (with or
without random effects), as predictors in a linear regression, or as
dependent variable in a beta-binomial ANOVA. For simulation and bootstrap
purposes, RR data can be generated according to several models.
Author: Daniel W. Heck [aut, cre], Morten Moshagen [aut]
Maintainer: Daniel W. Heck <dheck@mail.uni-mannheim.de>
Diff between RRreg versions 0.6.0 dated 2015-12-14 and 0.6.1 dated 2016-01-12
DESCRIPTION | 8 MD5 | 14 R/RRlog.R | 5 R/RRreg-package.R | 1 inst/CITATION | 10 inst/doc/RRreg.Rmd | 2 inst/doc/RRreg.html | 952 +++++++++++++++++----------------------------------- vignettes/RRreg.Rmd | 2 8 files changed, 345 insertions(+), 649 deletions(-)
Title: UCA Rcmdr Plug-in
Description: Some extension to Rcmdr (R Commander) made by R-UCA project and used in teaching statistics at University of Cadiz (UCA).
Author: Manuel Munoz-Marquez <manuel.munoz@uca.es>
Maintainer: Manuel Munoz-Marquez <manuel.munoz@uca.es>
Diff between RcmdrPlugin.UCA versions 2.0-4 dated 2015-06-10 and 2.0-5 dated 2016-01-12
ChangeLog | 10 ++++++++-- DESCRIPTION | 13 ++++++++----- MD5 | 11 ++++++----- R/RcmdrPlugin.UCA.R | 4 ++-- man/RcmdrPlugin.UCA-package.Rd | 4 ++-- man/RcmdrPlugin.UCA.es-package.Rd | 4 ++-- po/R-RcmdrPlugin.UCA-es.mo |only 7 files changed, 28 insertions(+), 18 deletions(-)
More information about RcmdrPlugin.UCA at CRAN
Permanent link
Title: Parametric Network Enrichment Analysis
Description: Includes functions and examples to compute Parametric Network Enrichment Analysis.
Author: Mirko Signorelli, Veronica Vinciotti and Ernst C. Wit
Maintainer: Mirko Signorelli <m.signorelli@rug.nl>
Diff between pnea versions 1.2.3 dated 2015-12-19 and 1.2.4 dated 2016-01-12
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- man/yeast.Rd | 17 +++++++++++++++++ 3 files changed, 23 insertions(+), 6 deletions(-)
Title: Directional Statistics
Description: A collection of R functions for directional data analysis.
Author: Michail Tsagris, Giorgos Athineou
Maintainer: Michail Tsagris <mtsagris@yahoo.gr>
Diff between Directional versions 1.5 dated 2015-11-23 and 1.6 dated 2016-01-12
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++++----- R/dirknn.R |only R/dirknn.tune.R |only R/rot.matrix.R | 5 ++--- man/bic.mixvmf.Rd | 2 +- man/dirknn.Rd |only man/dirknn.tune.Rd |only man/rmixvmf.Rd | 6 ++---- man/spher.reg.Rd | 4 ++-- 10 files changed, 20 insertions(+), 19 deletions(-)
Title: Community Ecology Package
Description: Ordination methods, diversity analysis and other
functions for community and vegetation ecologists.
Author: Jari Oksanen, F. Guillaume Blanchet, Roeland Kindt, Pierre Legendre,
Peter R. Minchin, R. B. O'Hara, Gavin L. Simpson, Peter Solymos,
M. Henry H. Stevens, Helene Wagner
Maintainer: Jari Oksanen <jari.oksanen@oulu.fi>
Diff between vegan versions 2.3-2 dated 2015-11-19 and 2.3-3 dated 2016-01-12
DESCRIPTION | 8 +-- MD5 | 56 +++++++++++++-------------- R/anosim.R | 9 ++-- R/bioenv.default.R | 4 - R/estaccumR.R | 2 R/gdispweight.R | 1 R/metaMDS.R | 8 +++ R/mrpp.R | 4 - R/ordiareatest.R | 4 - R/rarefy.R | 19 ++++----- R/renyiaccum.R | 1 R/specpool.R | 23 ++++++----- R/treedist.R | 5 ++ R/treedive.R | 6 ++ R/treeheight.R | 23 ++++++++++- R/tsallisaccum.R | 1 R/zzz.R | 2 inst/NEWS.Rd | 54 ++++++++++++++++++++++++++ inst/doc/FAQ-vegan.pdf |binary inst/doc/NEWS.html | 66 ++++++++++++++++++++++++++++++++ inst/doc/decision-vegan.pdf |binary inst/doc/diversity-vegan.pdf |binary inst/doc/intro-vegan.pdf |binary src/monoMDS.f | 12 ++++- vignettes/FAQ-vegan.pdf |binary vignettes/NEWS.html | 66 ++++++++++++++++++++++++++++++++ vignettes/decision-vegan.tex | 18 ++++---- vignettes/diversity-vegan.tex | 86 +++++++++++++++++++++--------------------- vignettes/intro-vegan.tex | 66 ++++++++++++++++++-------------- 29 files changed, 395 insertions(+), 149 deletions(-)
Title: Estimating Local Gaussian Parameters
Description: Computational routines for estimating and visualizing local Gaussian parameters. Local Gaussian parameters are useful for characterizing and testing for non-linear dependence within bivariate data. See e.g. Tjostheim and Hufthammer, Local Gaussian correlation: A new measure of dependence, Journal of Econometrics, 2013, Volume 172 (1), pages 33-48.
Author: Tore Selland Kleppe <tore.kleppe@uis.no>
Maintainer: Tore Selland Kleppe <tore.kleppe@uis.no>
Diff between localgauss versions 0.34 dated 2014-12-09 and 0.35 dated 2016-01-12
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/localgauss.R | 19 ++++++++++++------- src/Makevars | 1 - 4 files changed, 19 insertions(+), 15 deletions(-)
Title: Interface to the iDigBio Data API
Description: An interface to iDigBio's search API that allows downloading
specimen records. Searches are returned as a data.frame. Other functions
such as the metadata end points return lists of information. iDigBio is a US
project focused on digitizing and serving museum specimen collections on the
web. See <https://www.idigbio.org> for information on iDigBio.
Author: Francois Michonneau [aut, cph],
Matthew Collins [aut, cre],
Scott Chamberlain [ctb]
Maintainer: Matthew Collins <mcollins@acis.ufl.edu>
Diff between ridigbio versions 0.3.2 dated 2016-01-04 and 0.3.3 dated 2016-01-12
DESCRIPTION | 17 ++--- MD5 | 54 ++++++++-------- NAMESPACE | 2 man/build_field_lists.Rd | 2 man/idig_GET.Rd | 4 - man/idig_POST.Rd | 4 - man/idig_check.Rd | 2 man/idig_check_error.Rd | 4 - man/idig_count_media.Rd | 2 man/idig_count_records.Rd | 4 - man/idig_meta_fields.Rd | 2 man/idig_parse.Rd | 2 man/idig_search.Rd | 3 man/idig_search_media.Rd | 20 +++--- man/idig_search_records.Rd | 34 +++++----- man/idig_top_media.Rd | 2 man/idig_top_records.Rd | 12 +-- man/idig_url.Rd | 2 man/idig_validate.Rd | 4 - man/idig_version.Rd | 2 man/idig_view_media.Rd | 2 man/idig_view_records.Rd | 2 man/ridigbio.Rd | 10 +-- tests/testthat/test-idig_search_records.R | 39 +++++++----- tests/testthat/test-idig_top_media.R | 97 +++++++++++++++++------------- tests/testthat/test-idig_top_records.R | 95 +++++++++++++++++------------ tests/testthat/test-idig_view_media.R | 31 +++++---- tests/testthat/test-idig_view_records.R | 32 +++++---- 28 files changed, 267 insertions(+), 219 deletions(-)
Title: Data Cloning and MCMC Tools for Maximum Likelihood Methods
Description: Low level functions for implementing
maximum likelihood estimating procedures for
complex models using data cloning and Bayesian
Markov chain Monte Carlo methods.
Sequential and parallel MCMC support
for JAGS, WinBUGS and OpenBUGS.
Author: Peter Solymos
Maintainer: Peter Solymos <solymos@ualberta.ca>
Diff between dclone versions 2.0-0 dated 2013-09-30 and 2.1-1 dated 2016-01-12
DESCRIPTION | 26 ++++---- MD5 | 26 ++++---- NAMESPACE | 88 +++++++++++++++++---------- R/bugs.fit.R | 40 ++++++------ R/bugs.parfit.R | 30 ++++----- R/chisq.diag.mcmc.list.R | 12 +-- R/mclapplySB.R | 4 - R/pairs.mcmc.list.R | 12 +-- R/parDosa.R | 24 +++---- R/parLapplySB.R | 4 - R/parLapplySLB.R | 6 - R/snowWrapper.R | 16 ++-- inst/ChangeLog | 152 ++++++++++++++++++++++++++++++----------------- man/ovenbird.Rd | 2 14 files changed, 253 insertions(+), 189 deletions(-)
Title: AMCE Estimator for Conjoint Experiments
Description: An R implementation of the Average Marginal Component-specific Effects (AMCE) estimator presented in Hainmueller, J., Hopkins, D., and Yamamoto T. (2014) Causal Inference in Conjoint Analysis: Understanding Multi-Dimensional Choices via Stated Preference Experiments. Political Analysis 22(1):1-30.
Author: Anton Strezhnev, Elissa Berwick, Jens Hainmueller, Daniel Hopkins, Teppei Yamamoto
Maintainer: Anton Strezhnev <astrezhnev@fas.harvard.edu>
Diff between cjoint versions 2.0.1 dated 2015-10-17 and 2.0.3 dated 2016-01-12
DESCRIPTION | 8 MD5 | 14 NAMESPACE | 2 R/cjoint.R | 1608 ++++++++++++++++++++++++++++++---------------------- R/onAttach.R |only inst/CITATION |only man/amce.Rd | 60 + man/plot.amce.Rd | 63 +- man/summary.amce.Rd | 64 +- 9 files changed, 1087 insertions(+), 732 deletions(-)
Title: Detection of Outliers in Circular-Circular Regression
Description: Detection of outliers in circular-circular regression models, modifying its and estimating of models parameters.
Author: Azade Ghazanfarihesari, Majid Sarmad- Ferdowsi University Of Mashhad
Maintainer: Azade Ghazanfarihesari <azade_ghazanfari@yahoo.com>
Diff between CircOutlier versions 3.1.4 dated 2016-01-05 and 3.2.3 dated 2016-01-12
CircOutlier-3.1.4/CircOutlier/R/DMCE.R |only CircOutlier-3.1.4/CircOutlier/man/CircOutlier-package.Rd |only CircOutlier-3.2.3/CircOutlier/DESCRIPTION | 12 +- CircOutlier-3.2.3/CircOutlier/MD5 | 33 +++--- CircOutlier-3.2.3/CircOutlier/NAMESPACE | 4 CircOutlier-3.2.3/CircOutlier/R/DMCEE.R |only CircOutlier-3.2.3/CircOutlier/R/Huberized.R | 45 ++++---- CircOutlier-3.2.3/CircOutlier/R/MCE.R | 7 - CircOutlier-3.2.3/CircOutlier/R/Predict.R | 52 +++++----- CircOutlier-3.2.3/CircOutlier/R/mce_1.R | 11 +- CircOutlier-3.2.3/CircOutlier/data/DMCE.rda |only CircOutlier-3.2.3/CircOutlier/data/wind.rda |binary CircOutlier-3.2.3/CircOutlier/data/wind2.rda |only CircOutlier-3.2.3/CircOutlier/man/DMCE.Rd | 77 ++++----------- CircOutlier-3.2.3/CircOutlier/man/DMCEE.Rd |only CircOutlier-3.2.3/CircOutlier/man/Huberized.Rd | 1 CircOutlier-3.2.3/CircOutlier/man/MCE.Rd | 4 CircOutlier-3.2.3/CircOutlier/man/Predict.Rd | 6 - CircOutlier-3.2.3/CircOutlier/man/mce_1.Rd | 4 CircOutlier-3.2.3/CircOutlier/man/wind.Rd | 6 - CircOutlier-3.2.3/CircOutlier/man/wind2.Rd |only 21 files changed, 115 insertions(+), 147 deletions(-)