Title: Sustainable Transport Planning
Description: Functionality and data access tools for transport planning,
including origin-destination analysis, route allocation and modelling travel
patterns.
Author: Robin Lovelace [aut, cre],
Richard Ellison [aut],
Barry Rowlingson [aut] (Author of overline),
Nick Bearman [aut] (Co-author of gclip)
Maintainer: Robin Lovelace <rob00x@gmail.com>
Diff between stplanr versions 0.1.0 dated 2016-01-15 and 0.1.1 dated 2016-01-16
DESCRIPTION | 6 +++--- MD5 | 6 +++--- inst/doc/introducing-stplanr.html | 8 ++++---- src/spatialnetworks.cpp | 2 +- 4 files changed, 11 insertions(+), 11 deletions(-)
Title: An Extension to 'ggplot2', for the Creation of Ternary Diagrams
Description: Extends the functionality of 'ggplot2', providing the capability
to plot ternary diagrams for (subset of) the 'ggplot2' geometries. Additionally,
'ggtern' has implemented several NEW geometries which are unavailable to the
standard 'ggplot2' release. For further examples and documentation, please
proceed to the 'ggtern' website.
Author: Nicholas Hamilton [aut, cre]
Maintainer: Nicholas Hamilton <nick@ggtern.com>
Diff between ggtern versions 1.0.6.1 dated 2015-10-12 and 2.0.1 dated 2016-01-16
ggtern-1.0.6.1/ggtern/R/TRL-line.R |only ggtern-1.0.6.1/ggtern/R/aaa.R |only ggtern-1.0.6.1/ggtern/R/clip-polygons.R |only ggtern-1.0.6.1/ggtern/R/data.R |only ggtern-1.0.6.1/ggtern/R/element_ternary.R |only ggtern-1.0.6.1/ggtern/R/geom-Lline.R |only ggtern-1.0.6.1/ggtern/R/geom-Rline.R |only ggtern-1.0.6.1/ggtern/R/geom-Tline.R |only ggtern-1.0.6.1/ggtern/R/geom-confidence.R |only ggtern-1.0.6.1/ggtern/R/geom-errorbarL.R |only ggtern-1.0.6.1/ggtern/R/geom-errorbarR.R |only ggtern-1.0.6.1/ggtern/R/geom-errorbarT.R |only ggtern-1.0.6.1/ggtern/R/geom-polygon-tern.R |only ggtern-1.0.6.1/ggtern/R/geom-segment.R |only ggtern-1.0.6.1/ggtern/R/geom-smooth.R |only ggtern-1.0.6.1/ggtern/R/geom.R |only ggtern-1.0.6.1/ggtern/R/ggsave.R |only ggtern-1.0.6.1/ggtern/R/ggtern-build.R |only ggtern-1.0.6.1/ggtern/R/ggtern.R |only ggtern-1.0.6.1/ggtern/R/global.R |only ggtern-1.0.6.1/ggtern/R/kde2d-weighted.R |only ggtern-1.0.6.1/ggtern/R/labs-new.R |only ggtern-1.0.6.1/ggtern/R/labs-pcnt.R |only ggtern-1.0.6.1/ggtern/R/log-ratio-trans.R |only ggtern-1.0.6.1/ggtern/R/mahalanobis.R |only ggtern-1.0.6.1/ggtern/R/multiplot.R |only ggtern-1.0.6.1/ggtern/R/panel.R |only ggtern-1.0.6.1/ggtern/R/point-in-sequence.R |only ggtern-1.0.6.1/ggtern/R/scales.R |only ggtern-1.0.6.1/ggtern/R/stat-Lline.R |only ggtern-1.0.6.1/ggtern/R/stat-Rline.R |only ggtern-1.0.6.1/ggtern/R/stat-Tline.R |only ggtern-1.0.6.1/ggtern/R/stat-smooth.R |only ggtern-1.0.6.1/ggtern/R/statnew.R |only ggtern-1.0.6.1/ggtern/R/tern-clockwise.R |only ggtern-1.0.6.1/ggtern/R/tern-render.R |only ggtern-1.0.6.1/ggtern/R/tern-stop.R |only ggtern-1.0.6.1/ggtern/R/theme-arrowbaseline.R |only ggtern-1.0.6.1/ggtern/R/theme-convenience.R |only ggtern-1.0.6.1/ggtern/man/approved_geometries.Rd |only ggtern-1.0.6.1/ggtern/man/clipPolygons.Rd |only ggtern-1.0.6.1/ggtern/man/coord.Rd |only ggtern-1.0.6.1/ggtern/man/coord_tern.Rd |only ggtern-1.0.6.1/ggtern/man/data.Rd |only ggtern-1.0.6.1/ggtern/man/data_Feldspar.Rd |only ggtern-1.0.6.1/ggtern/man/data_USDA.Rd |only ggtern-1.0.6.1/ggtern/man/element_ternary.Rd |only ggtern-1.0.6.1/ggtern/man/enforceTernaryCoordinates.Rd |only ggtern-1.0.6.1/ggtern/man/expandRange.Rd |only ggtern-1.0.6.1/ggtern/man/expandTern.Rd |only ggtern-1.0.6.1/ggtern/man/geom_TLRline.Rd |only ggtern-1.0.6.1/ggtern/man/geom_errorbarTLR.Rd |only ggtern-1.0.6.1/ggtern/man/geom_polygon_tern.Rd |only ggtern-1.0.6.1/ggtern/man/geom_segment.Rd |only ggtern-1.0.6.1/ggtern/man/geomconfidence.Rd |only ggtern-1.0.6.1/ggtern/man/getBreaks.Rd |only ggtern-1.0.6.1/ggtern/man/ggtern-labels.Rd |only ggtern-1.0.6.1/ggtern/man/ggtern-package.Rd |only ggtern-1.0.6.1/ggtern/man/ggtern.multi.Rd |only ggtern-1.0.6.1/ggtern/man/iflasttern.Rd |only ggtern-1.0.6.1/ggtern/man/logratio.Rd |only ggtern-1.0.6.1/ggtern/man/mahalanobis.Rd |only ggtern-1.0.6.1/ggtern/man/notransform.Rd |only ggtern-1.0.6.1/ggtern/man/point.in.sequence.Rd |only ggtern-1.0.6.1/ggtern/man/print.Rd |only ggtern-1.0.6.1/ggtern/man/scale_TLR_continuous.Rd |only ggtern-1.0.6.1/ggtern/man/showhidegrid.Rd |only ggtern-1.0.6.1/ggtern/man/stat_interpolate_tern.Rd |only ggtern-1.0.6.1/ggtern/man/stat_smooth_tern.Rd |only ggtern-1.0.6.1/ggtern/man/suppressColours.Rd |only ggtern-1.0.6.1/ggtern/man/ternLimitsForCoord.Rd |only ggtern-1.0.6.1/ggtern/man/tern_dep.Rd |only ggtern-1.0.6.1/ggtern/man/tern_stop.Rd |only ggtern-1.0.6.1/ggtern/man/ternary_transformations.Rd |only ggtern-1.0.6.1/ggtern/man/theme_arrowbaseline.Rd |only ggtern-1.0.6.1/ggtern/man/theme_bw.Rd |only ggtern-1.0.6.1/ggtern/man/theme_classic.Rd |only ggtern-1.0.6.1/ggtern/man/theme_custom.Rd |only ggtern-1.0.6.1/ggtern/man/theme_gray.Rd |only ggtern-1.0.6.1/ggtern/man/theme_minimal.Rd |only ggtern-1.0.6.1/ggtern/man/theme_rgbg.Rd |only ggtern-1.0.6.1/ggtern/man/theme_rgbw.Rd |only ggtern-1.0.6.1/ggtern/man/undoCartesian.Rd |only ggtern-2.0.1/ggtern/DESCRIPTION | 68 ggtern-2.0.1/ggtern/MD5 | 253 +-- ggtern-2.0.1/ggtern/NAMESPACE | 445 ++++- ggtern-2.0.1/ggtern/NEWS | 15 ggtern-2.0.1/ggtern/R/aes.R | 25 ggtern-2.0.1/ggtern/R/calc-kde2d-weighted.R |only ggtern-2.0.1/ggtern/R/calc-mahalanobis-distance.R |only ggtern-2.0.1/ggtern/R/calc-tern-tlr2xy.R |only ggtern-2.0.1/ggtern/R/coord-tern.R | 1406 +++++++---------- ggtern-2.0.1/ggtern/R/depreciated.R |only ggtern-2.0.1/ggtern/R/doc-data.R |only ggtern-2.0.1/ggtern/R/doc-theme-convenience.R |only ggtern-2.0.1/ggtern/R/geom-Xisoprop.R |only ggtern-2.0.1/ggtern/R/geom-Xline.R |only ggtern-2.0.1/ggtern/R/geom-confidence-tern.R |only ggtern-2.0.1/ggtern/R/geom-density-tern.R | 102 - ggtern-2.0.1/ggtern/R/geom-errorbarX.R |only ggtern-2.0.1/ggtern/R/geom-interpolate-tern.R | 68 ggtern-2.0.1/ggtern/R/geom-mask.R |only ggtern-2.0.1/ggtern/R/geom-smooth-tern.R |only ggtern-2.0.1/ggtern/R/gg-internal.R | 75 ggtern-2.0.1/ggtern/R/ggtern-constructor.R |only ggtern-2.0.1/ggtern/R/ggtern-package.R | 34 ggtern-2.0.1/ggtern/R/labels-new.R |only ggtern-2.0.1/ggtern/R/labels-percent.R |only ggtern-2.0.1/ggtern/R/modifications-gridExtra.R |only ggtern-2.0.1/ggtern/R/onLoad.R | 52 ggtern-2.0.1/ggtern/R/plot-build.R |only ggtern-2.0.1/ggtern/R/plot-construction.R | 79 ggtern-2.0.1/ggtern/R/plot.R |only ggtern-2.0.1/ggtern/R/position-.R |only ggtern-2.0.1/ggtern/R/position-jitter-tern.R |only ggtern-2.0.1/ggtern/R/position-nudge-tern.R |only ggtern-2.0.1/ggtern/R/save.R |only ggtern-2.0.1/ggtern/R/scales-.R |only ggtern-2.0.1/ggtern/R/scales-tern.R |only ggtern-2.0.1/ggtern/R/stat-confidence-tern.R |only ggtern-2.0.1/ggtern/R/stat-density-tern.R | 163 + ggtern-2.0.1/ggtern/R/stat-interpolate-tern.R | 203 -- ggtern-2.0.1/ggtern/R/stat-smooth-tern.R |only ggtern-2.0.1/ggtern/R/strip-unapproved.R | 183 +- ggtern-2.0.1/ggtern/R/tern-limits.R | 86 - ggtern-2.0.1/ggtern/R/theme-arrowlength.R | 35 ggtern-2.0.1/ggtern/R/theme-clockwise.R |only ggtern-2.0.1/ggtern/R/theme-defaults.R | 686 +++++--- ggtern-2.0.1/ggtern/R/theme-elements.R | 182 +- ggtern-2.0.1/ggtern/R/theme-gridsontop.R |only ggtern-2.0.1/ggtern/R/theme-legend-position.R |only ggtern-2.0.1/ggtern/R/theme-noarrows.R | 9 ggtern-2.0.1/ggtern/R/theme-novar-tern.R | 31 ggtern-2.0.1/ggtern/R/theme-rotate.R |only ggtern-2.0.1/ggtern/R/theme-showgrid.R | 82 ggtern-2.0.1/ggtern/R/theme-showlabels.R | 15 ggtern-2.0.1/ggtern/R/theme-showsecondary.R | 22 ggtern-2.0.1/ggtern/R/theme-showtitles.R | 9 ggtern-2.0.1/ggtern/R/theme-ticksoutside.R | 12 ggtern-2.0.1/ggtern/R/theme.R | 122 - ggtern-2.0.1/ggtern/R/utilities-help.R | 104 - ggtern-2.0.1/ggtern/R/utilities.R | 594 +------ ggtern-2.0.1/ggtern/build/partial.rdb |binary ggtern-2.0.1/ggtern/data/Fragments.RData |only ggtern-2.0.1/ggtern/man/aes.Rd | 2 ggtern-2.0.1/ggtern/man/approved_layers.Rd |only ggtern-2.0.1/ggtern/man/calc_mahalanobis_distance.Rd |only ggtern-2.0.1/ggtern/man/convenience_functions.Rd | 62 ggtern-2.0.1/ggtern/man/coord-tern.Rd |only ggtern-2.0.1/ggtern/man/data_sets_Feldspar.Rd |only ggtern-2.0.1/ggtern/man/data_sets_Fragments.Rd |only ggtern-2.0.1/ggtern/man/data_sets_USDA.Rd |only ggtern-2.0.1/ggtern/man/geom_Xisoprop.Rd |only ggtern-2.0.1/ggtern/man/geom_Xline.Rd |only ggtern-2.0.1/ggtern/man/geom_confidence_tern.Rd |only ggtern-2.0.1/ggtern/man/geom_density_tern.Rd | 72 ggtern-2.0.1/ggtern/man/geom_errorbarX.Rd |only ggtern-2.0.1/ggtern/man/geom_interpolate_tern.Rd | 94 - ggtern-2.0.1/ggtern/man/geom_mask.Rd |only ggtern-2.0.1/ggtern/man/geom_smooth_tern.Rd | 104 - ggtern-2.0.1/ggtern/man/ggplot.Rd |only ggtern-2.0.1/ggtern/man/ggplotGrob.Rd |only ggtern-2.0.1/ggtern/man/ggplot_build.Rd | 28 ggtern-2.0.1/ggtern/man/ggplot_gtable.Rd | 4 ggtern-2.0.1/ggtern/man/ggsave.Rd | 58 ggtern-2.0.1/ggtern/man/ggtern.Rd | 14 ggtern-2.0.1/ggtern/man/ggtern_labels.Rd |only ggtern-2.0.1/ggtern/man/ggtern_package.Rd |only ggtern-2.0.1/ggtern/man/ggtern_themes.Rd |only ggtern-2.0.1/ggtern/man/kde2d.weighted.Rd | 14 ggtern-2.0.1/ggtern/man/label_formatter.Rd |only ggtern-2.0.1/ggtern/man/modification-gridExtra.Rd |only ggtern-2.0.1/ggtern/man/overloaded.Rd | 93 - ggtern-2.0.1/ggtern/man/plotconstruction.Rd |only ggtern-2.0.1/ggtern/man/position_jitter_tern.Rd |only ggtern-2.0.1/ggtern/man/position_nudge_tern.Rd |only ggtern-2.0.1/ggtern/man/scale_tern_continuous.Rd |only ggtern-2.0.1/ggtern/man/stat_density_tern.Rd | 89 - ggtern-2.0.1/ggtern/man/strip_unapproved.Rd | 12 ggtern-2.0.1/ggtern/man/suffix_arrow.Rd | 10 ggtern-2.0.1/ggtern/man/tern_limits.Rd | 47 ggtern-2.0.1/ggtern/man/ternary-transformation.Rd |only ggtern-2.0.1/ggtern/man/theme_clockwise.Rd | 8 ggtern-2.0.1/ggtern/man/theme_complete.Rd | 43 ggtern-2.0.1/ggtern/man/theme_elements.Rd | 134 - ggtern-2.0.1/ggtern/man/theme_gridsontop.Rd |only ggtern-2.0.1/ggtern/man/theme_novar_tern.Rd | 14 ggtern-2.0.1/ggtern/man/theme_showgrid.Rd |only ggtern-2.0.1/ggtern/man/theme_showlabels.Rd | 11 ggtern-2.0.1/ggtern/man/theme_showprimary.Rd | 30 ggtern-2.0.1/ggtern/man/theme_showtitles.Rd | 6 ggtern-2.0.1/ggtern/man/themearrowlength.Rd | 43 ggtern-2.0.1/ggtern/man/themelegendposition.Rd |only ggtern-2.0.1/ggtern/man/themerotate.Rd |only ggtern-2.0.1/ggtern/man/themeshowhidearrows.Rd | 2 ggtern-2.0.1/ggtern/man/themeticksoutside.Rd | 7 ggtern-2.0.1/ggtern/man/transform_position_tern.Rd |only ggtern-2.0.1/ggtern/man/undocumented.Rd | 151 - ggtern-2.0.1/ggtern/man/zzz-depreciated.Rd |only 199 files changed, 3172 insertions(+), 3140 deletions(-)
Title: Tools for Cycling Data Analysis
Description: A suite of functions for analysing cycling data.
Author: Jordan Mackie [aut, cre]
Maintainer: Jordan Mackie <jmackie@protonmail.com>
Diff between cycleRtools versions 1.0.4 dated 2015-12-01 and 1.1.0 dated 2016-01-16
cycleRtools-1.0.4/cycleRtools/R/CP_model_inv.R |only cycleRtools-1.0.4/cycleRtools/R/NP.R |only cycleRtools-1.0.4/cycleRtools/R/TSS.R |only cycleRtools-1.0.4/cycleRtools/R/Wbal_plots.R |only cycleRtools-1.0.4/cycleRtools/R/download_elev_data.R |only cycleRtools-1.0.4/cycleRtools/R/format_GC.R |only cycleRtools-1.0.4/cycleRtools/R/format_fit.R |only cycleRtools-1.0.4/cycleRtools/R/format_pwx.R |only cycleRtools-1.0.4/cycleRtools/R/format_srm.R |only cycleRtools-1.0.4/cycleRtools/R/format_tcx.R |only cycleRtools-1.0.4/cycleRtools/R/misc.R |only cycleRtools-1.0.4/cycleRtools/R/pwr_TRIMP.R |only cycleRtools-1.0.4/cycleRtools/R/read.R |only cycleRtools-1.0.4/cycleRtools/R/read_fit.R |only cycleRtools-1.0.4/cycleRtools/R/read_pwx.R |only cycleRtools-1.0.4/cycleRtools/R/read_srm.R |only cycleRtools-1.0.4/cycleRtools/R/read_tcx.R |only cycleRtools-1.0.4/cycleRtools/R/reset.R |only cycleRtools-1.0.4/cycleRtools/R/ride_time.R |only cycleRtools-1.0.4/cycleRtools/R/uniform.R |only cycleRtools-1.0.4/cycleRtools/R/zdist_plot.R |only cycleRtools-1.0.4/cycleRtools/R/zone_index.R |only cycleRtools-1.0.4/cycleRtools/R/zone_time.R |only cycleRtools-1.0.4/cycleRtools/data/cycling_data.rda |only cycleRtools-1.0.4/cycleRtools/data/interval_data.rda |only cycleRtools-1.0.4/cycleRtools/inst/doc/cycling_analysis.R |only cycleRtools-1.0.4/cycleRtools/inst/doc/cycling_analysis.Rmd |only cycleRtools-1.0.4/cycleRtools/inst/doc/cycling_analysis.html |only cycleRtools-1.0.4/cycleRtools/man/CP_model_inv.Rd |only cycleRtools-1.0.4/cycleRtools/man/NP.Rd |only cycleRtools-1.0.4/cycleRtools/man/TSS.Rd |only cycleRtools-1.0.4/cycleRtools/man/Wbal_plots.Rd |only cycleRtools-1.0.4/cycleRtools/man/cycling_data.Rd |only cycleRtools-1.0.4/cycleRtools/man/interval_data.Rd |only cycleRtools-1.0.4/cycleRtools/man/pwr_TRIMP.Rd |only cycleRtools-1.0.4/cycleRtools/man/read.Rd |only cycleRtools-1.0.4/cycleRtools/man/ride_time.Rd |only cycleRtools-1.0.4/cycleRtools/man/uniform.Rd |only cycleRtools-1.0.4/cycleRtools/src/rollmean_ema_.cpp |only cycleRtools-1.0.4/cycleRtools/vignettes/cycling_analysis.Rmd |only cycleRtools-1.1.0/cycleRtools/DESCRIPTION | 12 cycleRtools-1.1.0/cycleRtools/LICENSE | 2 cycleRtools-1.1.0/cycleRtools/MD5 | 162 +-- cycleRtools-1.1.0/cycleRtools/NAMESPACE | 27 cycleRtools-1.1.0/cycleRtools/NEWS | 43 cycleRtools-1.1.0/cycleRtools/R/GC.R | 14 cycleRtools-1.1.0/cycleRtools/R/LT.R | 7 cycleRtools-1.1.0/cycleRtools/R/Pt_model.R | 121 +- cycleRtools-1.1.0/cycleRtools/R/Ptmodels_S3.R | 177 --- cycleRtools-1.1.0/cycleRtools/R/RcppExports.R | 81 + cycleRtools-1.1.0/cycleRtools/R/Wbal.R | 71 + cycleRtools-1.1.0/cycleRtools/R/convert_time.R | 49 cycleRtools-1.1.0/cycleRtools/R/cycleRdata.R |only cycleRtools-1.1.0/cycleRtools/R/cycleRdata_S3.R | 538 +++++----- cycleRtools-1.1.0/cycleRtools/R/data_doc.R | 80 - cycleRtools-1.1.0/cycleRtools/R/elevation_correct.R | 87 + cycleRtools-1.1.0/cycleRtools/R/expand_stops.R |only cycleRtools-1.1.0/cycleRtools/R/formatting.R |only cycleRtools-1.1.0/cycleRtools/R/interval_detect.R | 97 + cycleRtools-1.1.0/cycleRtools/R/misc_exported.R |only cycleRtools-1.1.0/cycleRtools/R/misc_unexported.R |only cycleRtools-1.1.0/cycleRtools/R/mmv.R | 80 - cycleRtools-1.1.0/cycleRtools/R/reading.R |only cycleRtools-1.1.0/cycleRtools/R/rollmean_smth.R | 97 - cycleRtools-1.1.0/cycleRtools/R/smth_plot.R | 67 - cycleRtools-1.1.0/cycleRtools/R/special_plots.R |only cycleRtools-1.1.0/cycleRtools/R/summary_metrics.R |only cycleRtools-1.1.0/cycleRtools/R/zone_functions.R |only cycleRtools-1.1.0/cycleRtools/build/vignette.rds |binary cycleRtools-1.1.0/cycleRtools/data/Pt_prof.rda |binary cycleRtools-1.1.0/cycleRtools/data/intervaldata.rda |only cycleRtools-1.1.0/cycleRtools/data/ridedata.rda |only cycleRtools-1.1.0/cycleRtools/inst/doc/cycling_data_analysis.R |only cycleRtools-1.1.0/cycleRtools/inst/doc/cycling_data_analysis.Rmd |only cycleRtools-1.1.0/cycleRtools/inst/doc/cycling_data_analysis.html |only cycleRtools-1.1.0/cycleRtools/inst/extdata |only cycleRtools-1.1.0/cycleRtools/man/GC.Rd | 8 cycleRtools-1.1.0/cycleRtools/man/Pt_model.Rd | 35 cycleRtools-1.1.0/cycleRtools/man/Pt_prof.Rd | 9 cycleRtools-1.1.0/cycleRtools/man/Wbal.Rd | 70 + cycleRtools-1.1.0/cycleRtools/man/convert_time.Rd | 10 cycleRtools-1.1.0/cycleRtools/man/cycleRdata.Rd |only cycleRtools-1.1.0/cycleRtools/man/diff_section.Rd | 34 cycleRtools-1.1.0/cycleRtools/man/download_elev_data.Rd | 4 cycleRtools-1.1.0/cycleRtools/man/elevation_correct.Rd | 14 cycleRtools-1.1.0/cycleRtools/man/interval_detect.Rd | 74 + cycleRtools-1.1.0/cycleRtools/man/mmv.Rd | 40 cycleRtools-1.1.0/cycleRtools/man/mmv2.Rd | 10 cycleRtools-1.1.0/cycleRtools/man/plot.cycleRdata.Rd |only cycleRtools-1.1.0/cycleRtools/man/predict.Ptmodels.Rd | 35 cycleRtools-1.1.0/cycleRtools/man/read_ride.Rd |only cycleRtools-1.1.0/cycleRtools/man/reset.Rd | 20 cycleRtools-1.1.0/cycleRtools/man/ride_examples.Rd |only cycleRtools-1.1.0/cycleRtools/man/rollmean_nunif.Rd |only cycleRtools-1.1.0/cycleRtools/man/rollmean_smth.Rd | 66 - cycleRtools-1.1.0/cycleRtools/man/smth_plot.Rd | 26 cycleRtools-1.1.0/cycleRtools/man/summary.cycleRdata.Rd | 30 cycleRtools-1.1.0/cycleRtools/man/summary_metrics.Rd |only cycleRtools-1.1.0/cycleRtools/man/zdist_plot.Rd | 41 cycleRtools-1.1.0/cycleRtools/man/zone_index.Rd | 12 cycleRtools-1.1.0/cycleRtools/man/zone_time.Rd | 23 cycleRtools-1.1.0/cycleRtools/src/RcppExports.cpp | 73 + cycleRtools-1.1.0/cycleRtools/src/Wbal_.cpp | 61 - cycleRtools-1.1.0/cycleRtools/src/diff_section.cpp | 48 cycleRtools-1.1.0/cycleRtools/src/mmv2_.cpp | 22 cycleRtools-1.1.0/cycleRtools/src/na_split.cpp |only cycleRtools-1.1.0/cycleRtools/src/rollmean_.cpp | 102 + cycleRtools-1.1.0/cycleRtools/src/rollmean_nunif.cpp |only cycleRtools-1.1.0/cycleRtools/tests |only cycleRtools-1.1.0/cycleRtools/vignettes/cycling_data_analysis.Rmd |only 110 files changed, 1656 insertions(+), 1023 deletions(-)
Title: Subgroup Discovery Algorithms for R
Description: Implementation of some algorithms for the data mining task called
"subgroup discovery" without package dependencies. It also provide a Shiny App
for make the analysis easier. The algorithms works with data sets provided in
KEEL or ARFF format files or data.frame objects. If you want more information about KEEL format, please
refer to < http://www.keel.es > .
Author: Angel M. Garcia [aut, cre],
Pedro Gonzalez [aut, cph],
Cristobal J. Carmona [aut, cph],
Francisco Charte [ctb]
Maintainer: Angel M. Garcia <amgv0009@red.ujaen.es>
Diff between SDR versions 0.6.0.0 dated 2015-07-19 and 0.7.0.0 dated 2016-01-16
SDR-0.6.0.0/SDR/README.md |only SDR-0.6.0.0/SDR/vignettes/Interfaz1.png |only SDR-0.6.0.0/SDR/vignettes/Interfaz2.png |only SDR-0.6.0.0/SDR/vignettes/MESDIFSchema.png |only SDR-0.6.0.0/SDR/vignettes/NMEEFSchema.png |only SDR-0.7.0.0/SDR/DESCRIPTION | 21 SDR-0.7.0.0/SDR/LICENSE | 44 SDR-0.7.0.0/SDR/MD5 | 110 SDR-0.7.0.0/SDR/NAMESPACE | 21 SDR-0.7.0.0/SDR/NEWS.md |only SDR-0.7.0.0/SDR/R/Difuso.R | 476 +- SDR-0.7.0.0/SDR/R/FuGePSD.R |only SDR-0.7.0.0/SDR/R/MESDIF.R | 1097 ++-- SDR-0.7.0.0/SDR/R/NMEEFSD.R | 1529 +++--- SDR-0.7.0.0/SDR/R/PackageDoc.R | 63 SDR-0.7.0.0/SDR/R/QualityMeasures.R | 303 - SDR-0.7.0.0/SDR/R/SDIGA.R | 1399 +++--- SDR-0.7.0.0/SDR/R/Utils.R | 1448 +++--- SDR-0.7.0.0/SDR/R/datasets.R | 4 SDR-0.7.0.0/SDR/R/ga.R | 4012 +++++++++--------- SDR-0.7.0.0/SDR/R/leerDatos.R | 2013 ++++++--- SDR-0.7.0.0/SDR/R/read_arff.R |only SDR-0.7.0.0/SDR/build/vignette.rds |binary SDR-0.7.0.0/SDR/data/carTra.rda |binary SDR-0.7.0.0/SDR/data/carTst.rda |binary SDR-0.7.0.0/SDR/data/germanTra.rda |binary SDR-0.7.0.0/SDR/data/germanTst.rda |binary SDR-0.7.0.0/SDR/data/habermanTra.rda |binary SDR-0.7.0.0/SDR/data/habermanTst.rda |binary SDR-0.7.0.0/SDR/inst/doc/SDRpackage.R | 5 SDR-0.7.0.0/SDR/inst/doc/SDRpackage.Rmd | 87 SDR-0.7.0.0/SDR/inst/doc/SDRpackage.pdf |binary SDR-0.7.0.0/SDR/inst/shiny/server.R | 1346 +++--- SDR-0.7.0.0/SDR/inst/shiny/ui.R | 338 - SDR-0.7.0.0/SDR/inst/shiny/www/bootstrap.css |only SDR-0.7.0.0/SDR/inst/shiny/www/load.js | 4 SDR-0.7.0.0/SDR/inst/shiny/www/page2.md |only SDR-0.7.0.0/SDR/man/FUGEPSD.Rd |only SDR-0.7.0.0/SDR/man/FuGePSD_Mutation.Rd |only SDR-0.7.0.0/SDR/man/FuGePSD_crossover.Rd |only SDR-0.7.0.0/SDR/man/MESDIF.Rd | 11 SDR-0.7.0.0/SDR/man/NMEEF_SD.Rd | 4 SDR-0.7.0.0/SDR/man/Pop.evaluate.Rd |only SDR-0.7.0.0/SDR/man/Pop.fuzzyReasoningMethod.Rd |only SDR-0.7.0.0/SDR/man/Rule.addLabel.Rd |only SDR-0.7.0.0/SDR/man/Rule.addVariable.Rd |only SDR-0.7.0.0/SDR/man/Rule.changeLabel.Rd |only SDR-0.7.0.0/SDR/man/Rule.clearAntecedent.Rd |only SDR-0.7.0.0/SDR/man/Rule.compatibility.Rd |only SDR-0.7.0.0/SDR/man/Rule.deleteVariable.Rd |only SDR-0.7.0.0/SDR/man/Rule.evaluate.Rd |only SDR-0.7.0.0/SDR/man/Rule.exchangeVariables.Rd |only SDR-0.7.0.0/SDR/man/Rule.toCANVectorRepresentation.Rd |only SDR-0.7.0.0/SDR/man/SDIGA.Rd | 4 SDR-0.7.0.0/SDR/man/addKeelRegister.Rd |only SDR-0.7.0.0/SDR/man/changeTargetVariable.Rd | 11 SDR-0.7.0.0/SDR/man/createNewRule.Rd |only SDR-0.7.0.0/SDR/man/improvedTable.Rd |only SDR-0.7.0.0/SDR/man/keelFromARFF.Rd |only SDR-0.7.0.0/SDR/man/keelFromDataFrame.Rd |only SDR-0.7.0.0/SDR/man/modifyFuzzyCrispIntervals.Rd | 4 SDR-0.7.0.0/SDR/man/parseTime.Rd |only SDR-0.7.0.0/SDR/man/print.keel.Rd |only SDR-0.7.0.0/SDR/man/printFuGePSDParameters.Rd |only SDR-0.7.0.0/SDR/man/read.keel.Rd | 24 SDR-0.7.0.0/SDR/man/save.keel.Rd |only SDR-0.7.0.0/SDR/man/summary.keel.Rd |only SDR-0.7.0.0/SDR/man/tokenCompetition.Rd |only SDR-0.7.0.0/SDR/man/tournamentSelection.Rd |only SDR-0.7.0.0/SDR/man/writeRuleFile.Rd |only SDR-0.7.0.0/SDR/man/writeTestQMFile.Rd |only SDR-0.7.0.0/SDR/vignettes/Interfaz1.PNG |only SDR-0.7.0.0/SDR/vignettes/Interfaz2.PNG |only SDR-0.7.0.0/SDR/vignettes/MESDIFSchema.PNG |only SDR-0.7.0.0/SDR/vignettes/NMEEFSchema.PNG |only SDR-0.7.0.0/SDR/vignettes/SDRpackage.Rmd | 87 SDR-0.7.0.0/SDR/vignettes/salida.tex |only SDR-0.7.0.0/SDR/vignettes/testQualityMeasures.txt |only 78 files changed, 8114 insertions(+), 6351 deletions(-)
Title: An Algorithm to Infer Relatedness
Description: Inference of relatedness coefficients from a bi-allelic genotype matrix using a Maximum Likelihood estimation.
Author: Fabien Laporte
Maintainer: Fabien Laporte <fabien.laporte@moulon.inra.fr>
Diff between Relatedness versions 1.2 dated 2015-11-03 and 1.3 dated 2016-01-16
DESCRIPTION | 6 MD5 | 18 +- R/RelCoef.R | 248 +++++++++++++++++++-------------------- R/RelCoefLine.R |only R/RelComb.R |only R/Relatedness-internal.R | 281 +++++++++++++++------------------------------ data/Delta.rda |only man/Delta.Rd |only man/RelCoef.Rd | 20 +-- man/RelCoefLine.Rd |only man/RelComb.Rd |only man/Relatedness-package.Rd | 2 src/BoucleEMacc.c | 33 ----- 13 files changed, 250 insertions(+), 358 deletions(-)
Title: Statistical Methods for Visual Fields
Description: A collection of tools for analyzing the field of vision. It provides a framework for development and use of innovative methods for visualization, statistical analysis, and clinical interpretation of visual-field loss and its change over time. It is intended to be a tool for collaborative research.
Author: Ivan Marin-Franch <ivan.marin@uv.es>
Maintainer: Ivan Marin-Franch <ivan.marin@uv.es>
Diff between visualFields versions 0.4.2 dated 2015-01-28 and 0.4.3 dated 2016-01-16
DESCRIPTION | 10 +- MD5 | 166 +++++++++++++++++++++++------------------------ NAMESPACE | 13 ++- R/tdrank.R | 3 R/tdranknv.R | 5 - R/vfdemographics.R | 1 R/vflayout.R | 36 ++++++++++ data/csplocmap.rda |binary data/saplocmap.rda |binary data/vfidefault.rda |binary data/vfsettings.rda |binary inst/news.txt | 9 +- man/ageLinearModel.Rd | 2 man/bebie.Rd | 6 - man/colormapgraph.Rd | 2 man/createviewport.Rd | 2 man/csplocmap.Rd | 2 man/fdplocmap.Rd | 2 man/filterReliability.Rd | 2 man/getnv.Rd | 2 man/ghpostd.Rd | 2 man/ghranktd.Rd | 2 man/gloperc.Rd | 2 man/hist_poplr.Rd | 2 man/lidLensArtifact.Rd | 2 man/loadvfcsv.Rd | 2 man/loadvfxml.Rd | 2 man/loadvfxmlbatch.Rd | 2 man/locperc.Rd | 2 man/nvcspsgalpha.Rd | 2 man/nvsapdefault.Rd | 2 man/pdpmap.Rd | 2 man/pdpmapghr.Rd | 2 man/pdval.Rd | 2 man/pdvalghr.Rd | 2 man/poplr.Rd | 2 man/poplr_cstat.Rd | 2 man/poplr_pstat.Rd | 2 man/progols.Rd | 2 man/quad2Dfit.Rd | 2 man/ringmapgraph.Rd | 2 man/saplocmap.Rd | 2 man/sdnv.Rd | 2 man/sdnvghr.Rd | 2 man/setnv.Rd | 2 man/stimLoc.Rd | 2 man/tdpmap.Rd | 2 man/tdrank.Rd | 2 man/tdrankadjperc.Rd | 2 man/tdrankglm.Rd | 2 man/tdranknv.Rd | 2 man/tdrankperc.Rd | 2 man/tdval.Rd | 2 man/vf91016csp1vf.Rd | 2 man/vf91016left.Rd | 2 man/vf91016right.Rd | 2 man/vfShafi2011.Rd | 2 man/vfcolormap.Rd | 2 man/vfdemographics.Rd | 2 man/vfenv.Rd | 2 man/vfgrayscale.Rd | 2 man/vfidefault.Rd | 2 man/vfindex.Rd | 2 man/vfindexpmap.Rd | 2 man/vfiperc.Rd | 2 man/vflayout.Rd | 2 man/vflayout_legoplot.Rd | 2 man/vflayout_poplr.Rd | 2 man/vflayoutghr.Rd | 2 man/vfobject.Rd | 2 man/vfplot.Rd | 2 man/vfplot_poplr.Rd | 2 man/vfplotloc.Rd | 2 man/vfsegmentcoord.Rd | 2 man/vfselectvisit.Rd | 2 man/vfsettings.Rd | 2 man/vfsort.Rd | 2 man/vfstats.Rd | 2 man/vfstatspmap.Rd | 2 man/xmlblock.Rd | 2 man/xmldevval.Rd | 2 man/xmlitem.Rd | 2 man/xmlvfval.Rd | 2 man/xmlvfxy.Rd | 2 84 files changed, 214 insertions(+), 177 deletions(-)
Title: Variance Estimation for Sample Surveys by the Ultimate Cluster
Method
Description: Generation of domain variables, linearisation of several nonlinear population statistics (the ratio of two totals, weighted income percentile, relative median income ratio, at-risk-of-poverty rate, at-risk-of-poverty threshold, Gini coefficient, gender pay gap, the aggregate replacement ratio, the relative median income ratio, median income below at-risk-of-poverty gap, income quintile share ratio, relative median at-risk-of-poverty gap), computation of regression residuals in case of weight calibration, variance estimation of sample surveys by the ultimate cluster method (Hansen, Hurwitz and Madow, 1953), variance estimation for longitudinal, cross-sectional measures and measures of change for single and multistage stage cluster sampling designs (Berger, Y.G.). Several other precision measures are derived - standard error, the coefficient of variation, the margin of error, confidence interval, design effect.
Author: Juris Breidaks [aut, cre],
Martins Liberts [aut],
Santa Ivanova [aut]
Maintainer: Juris Breidaks <Juris.Breidaks@csb.gov.lv>
Diff between vardpoor versions 0.5.2 dated 2016-01-08 and 0.5.4 dated 2016-01-16
DESCRIPTION | 8 ++++---- MD5 | 32 ++++++++++++++++---------------- R/lin.ratio.R | 2 +- R/vardchangannual.R | 4 ++++ R/vardchanges.R | 11 ++++++++--- R/vardcros.R | 6 +++--- R/vardom.R | 4 ++-- R/vardomh.R | 4 ++-- R/variance_est.R | 23 ++++++++++++----------- inst/CITATION | 4 ++-- inst/NEWS | 8 ++++++++ man/lin.ratio.Rd | 9 ++++++--- man/vardchangannual.Rd | 6 ++++-- man/vardchanges.Rd | 3 ++- man/vardom.Rd | 5 +++-- man/vardomh.Rd | 12 ++++++++---- man/vardpoor-package.Rd | 4 ++-- 17 files changed, 87 insertions(+), 58 deletions(-)
Title: R Ultimate Multilabel Dataset Repository
Description: Large collection of multilabel datasets along with the functions
needed to export them to several formats, to make partitions, and to obtain
bibliographic information.
Author: David Charte [cre],
Francisco Charte [aut]
Maintainer: David Charte <fdavidcl@outlook.com>
Diff between mldr.datasets versions 0.3.1 dated 2015-11-24 and 0.3.15 dated 2016-01-16
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/export.R | 29 +++++++++++++++++------------ R/kfolds.R | 8 +++++--- R/utils.R | 24 +++++++++++++----------- README.md | 8 ++++++-- man/write.mldr.Rd | 4 ++-- 7 files changed, 53 insertions(+), 40 deletions(-)
Title: Exploratory Data Analysis and Manipulation of Multi-Label Data
Sets
Description: Exploratory data analysis and manipulation functions for multi-
label data sets along with an interactive Shiny application to ease their use.
Author: David Charte [cre],
Francisco Charte [aut]
Maintainer: David Charte <fdavidcl@outlook.com>
Diff between mldr versions 0.3.18 dated 2015-12-05 and 0.3.22 dated 2016-01-16
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/mldr.R | 10 +++++----- README.md | 20 +++++++++++++++++++- build/vignette.rds |binary inst/CITATION | 8 ++++++-- inst/doc/mldr.pdf |binary 7 files changed, 40 insertions(+), 18 deletions(-)
Title: Power Analysis for Generalised Linear Mixed Models by Simulation
Description: Calculate power for generalised linear mixed models, using
simulation. Designed to work with models fit using the 'lme4' package.
Author: Peter Green, Catriona MacLeod
Maintainer: Peter Green <greenp@landcareresearch.co.nz>
Diff between simr versions 1.0.0 dated 2015-11-01 and 1.0.1 dated 2016-01-16
DESCRIPTION | 11 +++--- MD5 | 26 ++++++++++---- NAMESPACE | 3 + NEWS.md |only R/getData.R | 19 +++++++--- R/glm.R | 28 +++------------ R/glmm.R | 2 - R/modify.R | 19 +++++++++- build/vignette.rds |only inst |only tests/testthat/test_binomial.R |only vignettes/examples.Rmd | 72 +++++++++++++++++++++++------------------ vignettes/fromscratch.Rmd | 14 +++++-- 13 files changed, 116 insertions(+), 78 deletions(-)
Title: Fast Spatial Ancestry via Flexible Allele Frequency Surfaces
Description: Used primarily for estimates of allele frequency surfaces from point estimates.
It can also place individuals of unknown origin back onto the geographic map with great accuracy.
Additionally, it can place admixed individuals by estimating contributing fractions at each
location on a map. Lastly, it can rank SNPs by their ability to differentiate populations.
See "Fast Spatial Ancestry via Flexible Allele Frequency Surfaces" (John Michael Ranola, John
Novembre, Kenneth Lange) in Bioinformatics 2014 for more info.
Author: John Michael O Ranola, John Novembre, and Kenneth Lange
Maintainer: John Michael O. Ranola <ranolaj@uw.edu>
Diff between OriGen versions 1.3.1 dated 2015-09-09 and 1.4.3 dated 2016-01-16
DESCRIPTION | 11 MD5 | 32 R/OriGen-internal.R | 459 ++- data/LocationsTrialDataSmall.txt.gz |binary data/MicrosatTrialDataSmall.txt.gz |binary man/CalcFractionsMultiLoglik.Rd |only man/FitAdmixedModelFindUnknowns.Rd | 59 man/FitMultinomialAdmixedModelFindUnknowns.Rd |only man/FitMultinomialModel.Rd | 68 man/FitMultinomialModelFindUnknowns.Rd | 65 man/FitOriGenModel.Rd | 9 man/FitOriGenModelFindUnknowns.Rd | 8 man/GenerateHeatMaps.Rd | 63 man/PlotAdmixedSurface.Rd | 38 man/PlotAlleleFrequencySurface.Rd | 51 man/PlotAlleleFrequencySurfaceOld.Rd | 8 man/PlotUnknownHeatMap.Rd | 8 src/OriGen.f90 | 3128 +++++++++++++++----------- 18 files changed, 2452 insertions(+), 1555 deletions(-)
Title: Tree Boosting for Multivariate Outcomes
Description: Fits a multivariate model of decision trees for multiple,
continuous outcome variables. A model for each outcome variable is fit
separately, selecting predictors that explain that explain covariance in
multiple outcomes. Package is built on top of 'gbm', which fits an ensemble
of decision trees to univariate outcomes.
Author: Patrick Miller [aut, cre]
Maintainer: Patrick Miller <patrick.mil10@gmail.com>
Diff between mvtboost versions 0.3 dated 2015-09-24 and 0.4.0 dated 2016-01-16
DESCRIPTION | 18 ++-- MD5 | 76 ++++++++++---------- NAMESPACE | 4 - R/mvtb_nonlin_test.R | 25 +++--- R/mvtb_plots.R | 62 +++++++++------- R/mvtb_summary.R | 40 ++++++---- R/mvtboost.R | 141 +++++++++++++++++++------------------ build/partial.rdb |binary build/vignette.rds |binary data/wellbeing.RData |binary inst/doc/mvtboost_vignette.R | 4 - inst/doc/mvtboost_vignette.Rmd | 14 ++- inst/doc/mvtboost_vignette.html | 28 +++---- inst/doc/mvtboost_wellbeing.R | 21 ++++- inst/doc/mvtboost_wellbeing.Rmd | 67 +++++++++++------ inst/doc/mvtboost_wellbeing.html | 93 +++++++++++++----------- man/addalpha.Rd | 2 man/colorRampPaletteAlpha.Rd | 2 man/gbm.ri.Rd | 8 +- man/mvtb.Rd | 147 +++++++++++++++++++-------------------- man/mvtb.cluster.Rd | 26 +++--- man/mvtb.covex.Rd |only man/mvtb.heat.Rd | 24 +++--- man/mvtb.nonlin.Rd | 27 +++---- man/mvtb.perspec.Rd | 26 +++--- man/mvtb.ri.Rd | 16 ++-- man/mvtb.uncomp.Rd | 2 man/mvtboost-package.Rd | 8 -- man/plot.mvtb.Rd | 18 ++-- man/predict.mvtb.Rd | 10 +- man/print.mvtb.Rd | 2 man/summary.mvtb.Rd | 2 man/wellbeing.Rd | 28 ++++++- tests/testthat/Rplots.pdf |binary tests/testthat/test_params.R | 20 +++++ tests/testthat/test_plot.R | 2 tests/testthat/test_summary.R | 46 +++++++----- vignettes/mvtboost_vignette.Rmd | 14 ++- vignettes/mvtboost_wellbeing.Rmd | 67 +++++++++++------ vignettes/wb_cv5test.Rdata |only 40 files changed, 622 insertions(+), 468 deletions(-)
Title: Functions for Time Series Analysis
Description: Includes non-parametric estimators and tests for time series analysis. The functions are to test for presence of possibly non-monotonic trends and for synchronism of trends in multiple time series, using modern bootstrap techniques and robust non-parametric difference-based estimators.
Author: Vyacheslav Lyubchich;
Yulia R. Gel;
Xingyu Wang;
Calvin Chu
Maintainer: Vyacheslav Lyubchich <lyubchic@umces.edu>
Diff between funtimes versions 2.0 dated 2015-08-08 and 2.1 dated 2016-01-16
DESCRIPTION | 19 ++++++++++--------- MD5 | 14 +++++++------- R/CWindowCluster.R | 4 ++-- R/q.tails.R | 8 ++++---- man/CWindowCluster.Rd | 27 ++++++++++++++------------- man/i.tails.Rd | 8 ++++++-- man/q.tails.Rd | 7 +++++-- man/sync.test.Rd | 4 ++-- 8 files changed, 50 insertions(+), 41 deletions(-)
Title: Probabilistic Population Projection
Description: Generating population projections for all countries of the world using several probabilistic components, such as total fertility rate (TFR) and life expectancy.
Author: Hana Sevcikova, Adrian Raftery, Thomas Buettner
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between bayesPop versions 5.4-0 dated 2015-07-18 and 6.0-0 dated 2016-01-16
bayesPop-5.4-0/bayesPop/data/vwBaseYear2008.R |only bayesPop-5.4-0/bayesPop/data/vwBaseYear2008.txt |only bayesPop-6.0-0/bayesPop/ChangeLog | 15 bayesPop-6.0-0/bayesPop/DESCRIPTION | 16 bayesPop-6.0-0/bayesPop/MD5 | 51 - bayesPop-6.0-0/bayesPop/NAMESPACE | 10 bayesPop-6.0-0/bayesPop/R/adjustments.R | 1 bayesPop-6.0-0/bayesPop/R/aggregate.R | 16 bayesPop-6.0-0/bayesPop/R/get_outputs.R | 91 +- bayesPop-6.0-0/bayesPop/R/plot_functions.R | 6 bayesPop-6.0-0/bayesPop/R/predict.pop.R | 382 +++++++- bayesPop-6.0-0/bayesPop/data/vwBaseYear2015.R |only bayesPop-6.0-0/bayesPop/data/vwBaseYear2015.txt |only bayesPop-6.0-0/bayesPop/inst/ex-data/Pop/predictions/prediction.rda |binary bayesPop-6.0-0/bayesPop/inst/ex-data/Pop/predictions/totpop_country218.rda |binary bayesPop-6.0-0/bayesPop/inst/ex-data/Pop/predictions/totpop_country528.rda |binary bayesPop-6.0-0/bayesPop/man/LifeTableMx.Rd | 28 bayesPop-6.0-0/bayesPop/man/age.specific.migration.Rd |only bayesPop-6.0-0/bayesPop/man/bayesPop-package.Rd | 6 bayesPop-6.0-0/bayesPop/man/expressions.Rd | 19 bayesPop-6.0-0/bayesPop/man/get.pop.Rd | 48 - bayesPop-6.0-0/bayesPop/man/pop.aggregate.Rd | 9 bayesPop-6.0-0/bayesPop/man/pop.map.Rd | 5 bayesPop-6.0-0/bayesPop/man/predict.pop.Rd | 35 bayesPop-6.0-0/bayesPop/man/specific_expressions.Rd | 4 bayesPop-6.0-0/bayesPop/man/vwBaseYear.Rd | 22 bayesPop-6.0-0/bayesPop/src/projection_functions.c | 449 +++++++--- bayesPop-6.0-0/bayesPop/tests/run_tests.R | 3 bayesPop-6.0-0/bayesPop/tests/test_functions.R | 72 + 29 files changed, 965 insertions(+), 323 deletions(-)