Title: Mixed Models, Particularly Spatial GLMMs
Description: Inference in mixed models, including GLMMs with spatial correlations and models with non-Gaussian random effects (e.g., Beta Binomial, or negative-binomial mixed models). Heteroscedasticity can further be fitted by a linear model. The algorithms are currently various Laplace approximations methods for ML or REML, in particular h-likelihood and penalized-likelihood methods.
Author: François Rousset [aut, cre, cph],
Jean-Baptiste Ferdy [aut, cph],
Alexandre Courtiol [ctb],
GSL authors [ctb] (src/gsl_bessel.*)
Maintainer: François Rousset <francois.rousset@univ-montp2.fr>
Diff between spaMM versions 1.7.1 dated 2016-01-21 and 1.7.2 dated 2016-01-25
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- R/HLfit.R | 8 ++++---- R/HLfit_Internals.R | 2 ++ R/MakeCovEst.R | 4 ++-- inst/NEWS.Rd | 3 ++- man/spaMM.Rd | 2 +- src/spaMM_linear.cpp | 3 ++- 8 files changed, 25 insertions(+), 21 deletions(-)
Title: R Graphics Devices for Vector Graphics Output
Description: Vector Graphics devices for SVG, DrawingML for
Microsoft Word and DrawingML for Microsoft PowerPoint.
Author: David Gohel [aut, cre]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between rvg versions 0.0.5 dated 2016-01-06 and 0.0.6 dated 2016-01-25
DESCRIPTION | 8 +- MD5 | 39 ++++++++--- NAMESPACE | 13 +++ NEWS |only R/interactivePointsGrob.R |only R/interactivePolygonGrob.R |only R/interactivePolylineGrob.R |only R/interactiveRectGrob.R |only R/interactiveSegmentsGrob.R |only R/interactiveTextGrob.R |only man/drawDetails.interactivePointsGrob.Rd |only man/drawDetails.interactivePolygonGrob.Rd |only man/drawDetails.interactivePolylineGrob.Rd |only man/drawDetails.interactiveRectGrob.Rd |only man/drawDetails.interactiveSegmentsGrob.Rd |only man/drawDetails.interactiveTextGrob.Rd |only man/interactivePointsGrob.Rd |only man/interactivePolygonGrob.Rd |only man/interactivePolylineGrob.Rd |only man/interactiveRectGrob.Rd |only man/interactiveSegmentsGrob.Rd |only man/interactiveTextGrob.Rd |only src/RcppExports.cpp | 18 ++--- src/a_color.cpp | 4 - src/docx.cpp | 2 src/dsvg.cpp | 50 ++++++++------ src/line_style.cpp | 3 src/pptx.cpp | 2 tests/testthat/test-svg-interactive.R | 97 +++++++++++++++++++++++++++++ tests/testthat/test-svg-lines.R | 4 - 30 files changed, 189 insertions(+), 51 deletions(-)
Title: 'NOAA' Weather Data from R
Description: Client for many 'NOAA' data sources including the 'NCDC' climate
'API' at http://www.ncdc.noaa.gov/cdo-web/webservices/v2, with functions for
each of the 'API' 'endpoints': data, data categories, data sets, data types,
locations, location categories, and stations. In addition, we have an interface
for 'NOAA' sea ice data, the 'NOAA' severe weather inventory, 'NOAA' Historical
Observing 'Metadata' Repository ('HOMR') data, 'NOAA' storm data via 'IBTrACS',
tornado data via the 'NOAA' storm prediction center, and more.
Author: Scott Chamberlain [aut, cre],
Karthik Ram [ctb],
Adam Erickson [ctb],
Nicholas Potter [ctb],
Joseph Stachelek [ctb],
Hart Edmund [ctb]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rnoaa versions 0.5.0 dated 2015-12-02 and 0.5.2 dated 2016-01-25
DESCRIPTION | 22 +-- LICENSE | 2 MD5 | 116 +++++++++-------- NAMESPACE | 11 + NEWS.md |only R/argo.R |only R/coops.R |only R/gefs.R | 9 - R/ghcnd.R | 12 + R/ncdc_plot.r | 46 +++---- R/rnoaa-package.r | 11 - R/seaice.r | 5 R/storm_shp.R | 3 R/tornadoes.R | 6 R/zzz.r | 5 README.md | 214 ++++++++++++++------------------- inst/doc/homr_vignette.Rmd | 122 ++++++++---------- inst/doc/homr_vignette.html | 124 ++++++++----------- inst/doc/ncdc_vignette.Rmd | 58 ++++---- inst/doc/ncdc_vignette.html | 58 ++++---- inst/doc/ncdc_workflow.Rmd | 91 +++++--------- inst/doc/ncdc_workflow.html | 91 +++++--------- inst/doc/seaice_vignette.Rmd | 50 +++---- inst/doc/seaice_vignette.html | 48 +++---- inst/doc/storms_vignette.Rmd | 12 - inst/doc/storms_vignette.html | 12 - inst/doc/swdi_vignette.Rmd | 94 ++++---------- inst/doc/swdi_vignette.html | 94 ++++---------- inst/vign/figure/seaice1-1.png |only inst/vign/figure/seaice2-1.png |only inst/vign/figure/unnamed-chunk-2-1.png |binary inst/vign/figure/unnamed-chunk-3-1.png |binary inst/vign/figure/unnamed-chunk-4-1.png |binary inst/vign/figure/unnamed-chunk-5-1.png |binary inst/vign/figure/unnamed-chunk-7-1.png |binary inst/vign/figure/unnamed-chunk-8-1.png |binary inst/vign/homr_vignette.md | 122 ++++++++---------- inst/vign/myfile.kmz |binary inst/vign/myfile.zip |binary inst/vign/ncdc_vignette.md | 58 ++++---- inst/vign/ncdc_workflow.md | 91 +++++--------- inst/vign/seaice_vignette.Rmd | 35 +++-- inst/vign/seaice_vignette.md | 50 +++---- inst/vign/storms_vignette.md | 12 - inst/vign/swdi_vignette.md | 94 ++++---------- man/argo.Rd |only man/coops.Rd |only man/gefs.Rd | 5 man/ghcnd.Rd | 13 ++ man/ncdc_plot.Rd | 31 +--- man/rnoaa-package.Rd | 6 tests/testthat/test-coops.R |only tests/testthat/test-gefs.R | 31 ++-- tests/testthat/test-ncdc_locs_cats.r | 2 tests/testthat/test-ncdc_plot.r | 1 tests/testthat/test-seaice.R | 7 - tests/testthat/test-storms.R | 27 ++-- vignettes/homr_vignette.Rmd | 122 ++++++++---------- vignettes/ncdc_vignette.Rmd | 58 ++++---- vignettes/ncdc_workflow.Rmd | 91 +++++--------- vignettes/seaice_vignette.Rmd | 50 +++---- vignettes/storms_vignette.Rmd | 12 - vignettes/swdi_vignette.Rmd | 94 ++++---------- 63 files changed, 961 insertions(+), 1367 deletions(-)
Title: Provides an Interface to the Agent-Based Modelling Platform
NetLogo
Description: Interface to use and access Wilensky's NetLogo (Wilensky 1999) from R using either headless (no GUI) or interactive GUI mode. Provides functions to load models, execute commands, and get values from reporters. Mostly analogous to the NetLogo Mathematica Link https://github.com/NetLogo/Mathematica-Link.
Author: Jan C. Thiele
Maintainer: Jan C. Thiele <rnetlogo@gmx.de>
Diff between RNetLogo versions 1.0-1 dated 2014-10-12 and 1.0-2 dated 2016-01-25
DESCRIPTION | 14 - MD5 | 136 +++++----- NEWS | 4 R/NLCommand.R | 4 R/NLDfToList.R | 2 R/NLDoCommand.R | 6 R/NLDoCommandWhile.R | 4 R/NLDoReport.R | 4 R/NLDoReportWhile.R | 4 R/NLGetAgentSet.R | 40 -- R/NLGetGraph.R | 12 R/NLGetPatches.R | 44 --- R/NLLoadModel.R | 4 R/NLQuit.R | 12 R/NLReport.R | 4 R/NLSetAgentSet.R | 31 -- R/NLSetPatchSet.R | 24 - R/NLSetPatches.R | 33 -- R/NLSourceFromString.R | 4 R/NLStart.R | 5 R/onLoad.R | 31 -- build/vignette.rds |binary inst/NEWS.Rd | 17 + inst/doc/parallelProcessing.R | 2 inst/doc/parallelProcessing.Rnw | 2 inst/doc/parallelProcessing.pdf |binary inst/examples/applications/3dPlot/3dPlot.R | 2 inst/examples/applications/AnalyticComparison/analytic.R | 2 inst/examples/applications/Database/database.R | 2 inst/examples/applications/ExplorativeAnalysis/explorativeAnalysis.R | 2 inst/examples/applications/TimeSlider/timeslieder.R | 2 inst/examples/applications/TimeSlider/timeslieder2.R | 2 inst/examples/code_samples/1-NLStart/NLStart.R | 2 inst/examples/code_samples/10-NLGetPatches/NLGetPatches.R | 4 inst/examples/code_samples/11-NLGetAgentSet/NLGetAgentSet.R | 4 inst/examples/code_samples/12-NLSetPatches/NLSetPatches.R | 4 inst/examples/code_samples/13-NLSetPatchSet/NLSetPatchSet.R | 4 inst/examples/code_samples/14-NLSetAgentSet/NLSetAgentSet.R | 4 inst/examples/code_samples/15-NLGetGraph/NLGetGraph.R | 2 inst/examples/code_samples/16-NLSourceFromText/NLSourceFromText.R | 4 inst/examples/code_samples/2-NLLoadModel/NLLoadModel.R | 2 inst/examples/code_samples/3-NLCommand/NLCommand.R | 2 inst/examples/code_samples/4-NLReport/NLReport.R | 2 inst/examples/code_samples/5-NLQuit/NLQuit.R | 2 inst/examples/code_samples/6-Headless/NLStartQuitMultiple.R | 2 inst/examples/code_samples/7-NLDoCommand_NLDoReport/NLDoCommand_NLDoReport.R | 2 inst/examples/code_samples/8-NLDoCommandWhile_NLDoReportWhile/NLDoCommandReportWhile.R | 2 inst/examples/code_samples/9-NLDfToList/NLDfToList.R | 4 inst/java/RNetLogo.jar |binary inst/quickStartGuide.txt | 4 man/NLCommand.Rd | 2 man/NLDfToList.Rd | 2 man/NLDoCommand.Rd | 2 man/NLDoCommandWhile.Rd | 2 man/NLDoReport.Rd | 2 man/NLDoReportWhile.Rd | 2 man/NLGetAgentSet.Rd | 2 man/NLGetGraph.Rd | 2 man/NLGetPatches.Rd | 2 man/NLLoadModel.Rd | 2 man/NLQuit.Rd | 2 man/NLReport.Rd | 2 man/NLSetAgentSet.Rd | 2 man/NLSetPatchSet.Rd | 2 man/NLSetPatches.Rd | 2 man/NLSourceFromString.Rd | 2 man/NLStart.Rd | 10 man/RNetLogo-package.Rd | 16 - vignettes/parallelProcessing.Rnw | 2 69 files changed, 195 insertions(+), 370 deletions(-)
Title: Reproduce Statistical Analyses and Meta-Analyses
Description: The reproducer R package includes data analysis functions and data
sets (e.g., related to software defect prediction) to streamline reproducible
research in software engineering.
Author: Lech Madeyski [cre, aut, ctb],
Marian Jureczko [ctb] (Data contributor),
Barbara Kitchenham [ctb] (Data contributor),
David Bodgen [ctb] (Data contributor),
Pearl Brereton [ctb] (Data contributor),
Jacky Keung [ctb] (Data contributor),
Stuart Charters [ctb] (Data contributor),
Shirley Gibbs [ctb] (Data contributor),
Amnart Pohthong [ctb] (Data contributor)
Maintainer: Lech Madeyski <lech.madeyski@gmail.com>
Diff between reproducer versions 0.1.3 dated 2015-05-22 and 0.1.4 dated 2016-01-25
DESCRIPTION | 35 + MD5 | 66 +- NAMESPACE | 3 NEWS.md |only R/MadeyskiKitchenhamMetaAnalysis.R | 4 R/data.R | 243 ++++++++++ R/reproducer.R | 66 +- README.md | 2 data/KitchenhamMadeyskiBudgen16.COCOMO.rda |only data/KitchenhamMadeyskiBudgen16.DiffInDiffData.rda |only data/KitchenhamMadeyskiBudgen16.FINNISH.rda |only data/KitchenhamMadeyskiBudgen16.PolishData.rda |only data/KitchenhamMadeyskiBudgen16.PolishSubjects.rda |only data/KitchenhamMadeyskiBudgen16.SubjectData.rda |only inst/CITATION | 42 - man/Ciolkowski09ESEM.MetaAnalysis.PBRvsCBRorAR.Rd | 3 man/KitchenhamMadeyskiBudgen16.COCOMO.Rd |only man/KitchenhamMadeyskiBudgen16.DiffInDiffData.Rd |only man/KitchenhamMadeyskiBudgen16.FINNISH.Rd |only man/KitchenhamMadeyskiBudgen16.PolishData.Rd |only man/KitchenhamMadeyskiBudgen16.PolishSubjects.Rd |only man/KitchenhamMadeyskiBudgen16.SubjectData.Rd |only man/Madeyski15EISEJ.OpenProjects.Rd | 3 man/Madeyski15EISEJ.PropProjects.Rd | 3 man/Madeyski15EISEJ.StudProjects.Rd | 3 man/Madeyski15SQJ.NDC.Rd | 3 man/MadeyskiKitchenham.MetaAnalysis.PBRvsCBRorAR.Rd | 3 man/boxplotAndDensityCurveOnHistogram.Rd | 2 man/boxplotHV.Rd | 5 man/cloudOfWords.Rd | 2 man/densityCurveOnHistogram.Rd | 2 man/fmt.Rd |only man/printXTable.Rd | 2 man/readExcelSheet.Rd | 2 man/reproduceForestPlotRandomEffects.Rd | 2 man/reproduceMixedEffectsAnalysisWithEstimatedVarianceAndExperimentalDesignModerator.Rd | 2 man/reproduceMixedEffectsAnalysisWithExperimentalDesignModerator.Rd | 2 man/reproduceMixedEffectsForestPlotWithExperimentalDesignModerator.Rd | 2 man/reproduceTableWithEffectSizesBasedOnMeanDifferences.Rd | 2 man/reproduceTableWithPossibleModeratingFactors.Rd | 2 man/reproduceTableWithSourceDataByCiolkowski.Rd | 2 41 files changed, 388 insertions(+), 120 deletions(-)
Title: Classes with Reference Semantics
Description: The R6 package allows the creation of classes with reference
semantics, similar to R's built-in reference classes. Compared to reference
classes, R6 classes are simpler and lighter-weight, and they are not built
on S4 classes so they do not require the methods package. These classes
allow public and private members, and they support inheritance, even when
the classes are defined in different packages.
Author: Winston Chang [aut, cre]
Maintainer: Winston Chang <winston@stdout.org>
Diff between R6 versions 2.1.1 dated 2015-08-18 and 2.1.2 dated 2016-01-25
DESCRIPTION | 6 - MD5 | 16 ++-- NAMESPACE | 2 NEWS | 13 +++ R/print.R | 98 ++++++++++++++---------- inst/doc/Debugging.html | 6 - inst/doc/Introduction.html | 22 ++--- inst/doc/Performance.html | 178 +++++++++++++++++++++------------------------ inst/doc/Portable.html | 6 - 9 files changed, 186 insertions(+), 161 deletions(-)
Title: Parallel Model-Based Clustering using
Expectation-Gathering-Maximization Algorithm for Finite Mixture
Gaussian Model
Description: Aims to utilize model-based clustering (unsupervised)
for high dimensional and ultra large data, especially in a distributed
manner. The code employs pbdMPI to perform a
expectation-gathering-maximization algorithm
for finite mixture Gaussian
models. The unstructured dispersion matrices are assumed in the
Gaussian models. The implementation is default in the single program
multiple data programming model. The code can be executed
through pbdMPI and independent to most MPI applications.
See the High Performance
Statistical Computing website for more information, documents
and examples.
Author: Wei-Chen Chen [aut, cre],
George Ostrouchov [aut]
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between pmclust versions 0.1-6 dated 2014-02-03 and 0.1-7 dated 2016-01-25
pmclust-0.1-6/pmclust/vignettes/pmclust-include/jss.bst |only pmclust-0.1-6/pmclust/vignettes/pmclust-include/jss.cls |only pmclust-0.1-7/pmclust/ChangeLog | 8 pmclust-0.1-7/pmclust/DESCRIPTION | 38 ++-- pmclust-0.1-7/pmclust/MD5 | 90 +++++----- pmclust-0.1-7/pmclust/NAMESPACE | 20 ++ pmclust-0.1-7/pmclust/R/000_globalVariables.r |only pmclust-0.1-7/pmclust/R/00_pmclust.r | 4 pmclust-0.1-7/pmclust/R/00_pmclust_internal.r | 2 pmclust-0.1-7/pmclust/R/00_pmclust_internal_dmat.r | 2 pmclust-0.1-7/pmclust/R/01_as_dmat.r | 4 pmclust-0.1-7/pmclust/R/01_as_spmd.r | 4 pmclust-0.1-7/pmclust/R/02_convert_data.r | 2 pmclust-0.1-7/pmclust/R/02_load_balance.r | 6 pmclust-0.1-7/pmclust/demo/dmat_em.r | 4 pmclust-0.1-7/pmclust/demo/dmat_kmeans.r | 4 pmclust-0.1-7/pmclust/demo/ex_MixSim.r | 2 pmclust-0.1-7/pmclust/demo/ex_aecm.r | 2 pmclust-0.1-7/pmclust/demo/ex_apecm.r | 2 pmclust-0.1-7/pmclust/demo/ex_apecma.r | 2 pmclust-0.1-7/pmclust/demo/ex_em.r | 2 pmclust-0.1-7/pmclust/demo/ex_kmeans.r | 2 pmclust-0.1-7/pmclust/demo/gbd_aecm.r | 2 pmclust-0.1-7/pmclust/demo/gbd_apecm.r | 2 pmclust-0.1-7/pmclust/demo/gbd_apecma.r | 2 pmclust-0.1-7/pmclust/demo/gbd_em.r | 2 pmclust-0.1-7/pmclust/demo/gbd_kmeans.r | 2 pmclust-0.1-7/pmclust/demo/io_csv.r | 2 pmclust-0.1-7/pmclust/demo/iris_common.r | 4 pmclust-0.1-7/pmclust/demo/iris_dmat.r | 6 pmclust-0.1-7/pmclust/demo/iris_gbdr.r | 4 pmclust-0.1-7/pmclust/demo/iris_single.r | 6 pmclust-0.1-7/pmclust/inst/CITATION | 10 - pmclust-0.1-7/pmclust/inst/doc/pmclust-guide.Rnw | 24 +- pmclust-0.1-7/pmclust/inst/doc/pmclust-guide.pdf |binary pmclust-0.1-7/pmclust/man/01-pmclust_pkmeans.Rd | 4 pmclust-0.1-7/pmclust/man/50-as.dmat.spmd.Rd | 8 pmclust-0.1-7/pmclust/tests/dmat_em.r | 4 pmclust-0.1-7/pmclust/tests/dmat_kmeans.r | 4 pmclust-0.1-7/pmclust/tests/iris_em_dmat.r | 4 pmclust-0.1-7/pmclust/tests/iris_em_spmd.r | 4 pmclust-0.1-7/pmclust/tests/iris_kmeans_dmat.r | 4 pmclust-0.1-7/pmclust/tests/iris_kmeans_spmd.r | 4 pmclust-0.1-7/pmclust/vignettes/build_pdf.sh | 11 + pmclust-0.1-7/pmclust/vignettes/pmclust-guide.Rnw | 18 +- pmclust-0.1-7/pmclust/vignettes/pmclust-include/01-acknowledgement.tex | 6 pmclust-0.1-7/pmclust/vignettes/pmclust-include/01-introduction.tex | 2 pmclust-0.1-7/pmclust/vignettes/pmclust-include/my_jss.cls |only 48 files changed, 195 insertions(+), 144 deletions(-)
Title: Panel Dynamic OLS Estimation of Cointegrating Vectors
Description: Estimates panel data cointegrating relationships following the estimator of Mark and Sul (2003), <DOI:10.1111/j.1468-0084.2003.00066.x>.
Author: Raad Khraishi [aut, cre]
Maintainer: Raad Khraishi <raadkhraishi+pdolsms@gmail.com>
Diff between pdolsms versions 0.1 dated 2016-01-24 and 0.2 dated 2016-01-25
DESCRIPTION | 6 ++--- MD5 | 6 ++--- R/pdols.R | 51 +++++++++++++++++++++++++++++-------------------- data/marksul2003.RData |binary 4 files changed, 37 insertions(+), 26 deletions(-)
Title: Programming with Big Data --- MPI Profiling Tools
Description: MPI profiling tools.
Author: Wei-Chen Chen [aut, cre],
Drew Schmidt [aut],
Gaurav Sehrawat [aut],
Pragneshkumar Patel [aut],
George Ostrouchov [aut]
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between pbdPROF versions 0.2-3 dated 2014-05-26 and 0.3-0 dated 2016-01-25
pbdPROF-0.2-3/pbdPROF/R/benchplot.r |only pbdPROF-0.2-3/pbdPROF/R/grid_plotter.r |only pbdPROF-0.2-3/pbdPROF/R/plot.r |only pbdPROF-0.2-3/pbdPROF/R/plot_fpmpi.r |only pbdPROF-0.2-3/pbdPROF/R/plot_mpiP.r |only pbdPROF-0.2-3/pbdPROF/R/plot_tau.r |only pbdPROF-0.2-3/pbdPROF/R/printing.r |only pbdPROF-0.2-3/pbdPROF/R/read.r |only pbdPROF-0.2-3/pbdPROF/README |only pbdPROF-0.2-3/pbdPROF/man/00_pbdPROF-package.Rd |only pbdPROF-0.2-3/pbdPROF/man/01_profilers.Rd |only pbdPROF-0.2-3/pbdPROF/man/02_classes.Rd |only pbdPROF-0.2-3/pbdPROF/man/12_example.Rd |only pbdPROF-0.2-3/pbdPROF/man/aa_read_prof.Rd |only pbdPROF-0.2-3/pbdPROF/man/bb_print.Rd |only pbdPROF-0.2-3/pbdPROF/man/cc_plot.Rd |only pbdPROF-0.2-3/pbdPROF/man/dd_benchplot.Rd |only pbdPROF-0.2-3/pbdPROF/man/zz_internal.Rd |only pbdPROF-0.2-3/pbdPROF/vignettes/include/05-profiling.tex |only pbdPROF-0.2-3/pbdPROF/vignettes/include/06-plotting.tex |only pbdPROF-0.2-3/pbdPROF/vignettes/include/07-debugging.tex |only pbdPROF-0.2-3/pbdPROF/vignettes/include/jss.bst |only pbdPROF-0.3-0/pbdPROF/ChangeLog | 10 + pbdPROF-0.3-0/pbdPROF/DESCRIPTION | 26 ++-- pbdPROF-0.3-0/pbdPROF/MD5 | 75 +++++------- pbdPROF-0.3-0/pbdPROF/NAMESPACE | 28 +--- pbdPROF-0.3-0/pbdPROF/R/00-classes.r | 38 ++++-- pbdPROF-0.3-0/pbdPROF/R/01-generics.r | 8 - pbdPROF-0.3-0/pbdPROF/R/data.r |only pbdPROF-0.3-0/pbdPROF/R/parse.r | 15 +- pbdPROF-0.3-0/pbdPROF/R/pbdPROF-package.r |only pbdPROF-0.3-0/pbdPROF/R/print.r |only pbdPROF-0.3-0/pbdPROF/R/read.prof.r |only pbdPROF-0.3-0/pbdPROF/README.md |only pbdPROF-0.3-0/pbdPROF/demo/allreduce.fpmpi.r | 5 pbdPROF-0.3-0/pbdPROF/demo/allreduce.mpip.r | 5 pbdPROF-0.3-0/pbdPROF/demo/masterslavePI.fpmpi.r | 5 pbdPROF-0.3-0/pbdPROF/demo/masterslavePI.mpip.r | 5 pbdPROF-0.3-0/pbdPROF/demo/svd.fpmpi.r | 5 pbdPROF-0.3-0/pbdPROF/demo/svd.mpip.r | 5 pbdPROF-0.3-0/pbdPROF/inst/CITATION | 4 pbdPROF-0.3-0/pbdPROF/inst/doc/pbdPROF-guide.Rnw | 26 ++-- pbdPROF-0.3-0/pbdPROF/inst/doc/pbdPROF-guide.pdf |binary pbdPROF-0.3-0/pbdPROF/man/Example-datasets.Rd |only pbdPROF-0.3-0/pbdPROF/man/pbdPROF-package.Rd |only pbdPROF-0.3-0/pbdPROF/man/prof-class.Rd |only pbdPROF-0.3-0/pbdPROF/man/prof-print.Rd |only pbdPROF-0.3-0/pbdPROF/man/profilers.Rd |only pbdPROF-0.3-0/pbdPROF/man/read.prof.Rd |only pbdPROF-0.3-0/pbdPROF/src/Makevars.win | 2 pbdPROF-0.3-0/pbdPROF/vignettes/build_pdf.sh | 12 + pbdPROF-0.3-0/pbdPROF/vignettes/include/00-copyright.tex | 2 pbdPROF-0.3-0/pbdPROF/vignettes/include/02-installation.tex | 2 pbdPROF-0.3-0/pbdPROF/vignettes/include/05-plotting.tex |only pbdPROF-0.3-0/pbdPROF/vignettes/include/06-debugging.tex |only pbdPROF-0.3-0/pbdPROF/vignettes/pbdPROF-guide.Rnw | 26 ++-- 56 files changed, 155 insertions(+), 149 deletions(-)
Title: '--omics' Data Analysis Toolbox
Description: A collection of functions to analyse '--omics' datasets such as DNA
methylation and gene expression profiles.
Author: Gianluca Campanella [aut, cre]
Maintainer: Gianluca Campanella <gianluca@campanella.org>
Diff between omics versions 0.1-1 dated 2015-12-05 and 0.1-2 dated 2016-01-25
DESCRIPTION | 9 +++++---- MD5 | 10 ++++++---- R/mlm.R | 16 +++++++++------- R/mlmer.R | 32 ++++++++++++++++++++------------ inst/NEWS.Rd | 6 ++++++ tests |only 6 files changed, 46 insertions(+), 27 deletions(-)
Title: Multi-Resolution Scanning for Cross-Sample Differences
Description: An implementation of the MRS algorithm for comparison across distributions.
The model is based on a nonparametric process taking the form of a Markov model
that transitions between a "null" and an "alternative" state
on a multi-resolution partition tree of the sample space.
MRS effectively detects and characterizes a variety of underlying differences.
These differences can be visualized using several plotting functions.
Author: Jacopo Soriano and Li Ma
Maintainer: Jacopo Soriano <jsoriano.stat@gmail.com>
Diff between MRS versions 1.0 dated 2015-12-07 and 1.1 dated 2016-01-25
MRS-1.0/MRS/man/MRS-package.Rd |only MRS-1.1/MRS/DESCRIPTION | 10 +++++----- MRS-1.1/MRS/MD5 | 11 +++++------ MRS-1.1/MRS/R/RcppExports.R | 4 ++++ MRS-1.1/MRS/R/mrs.R | 11 +++++++---- MRS-1.1/MRS/src/RcppExports.cpp | 1 + MRS-1.1/MRS/src/helpers.cpp | 18 ++++++++++++------ 7 files changed, 34 insertions(+), 21 deletions(-)
Title: Miscellaneous Tools Set
Description: A collection of miscellaneous methods to simplify various tasks,
including plotting, data.frame and matrix transformations, environment
functions, regular expression methods, and string and logical operations, as
well as numerical and statistical tools. Most of the methods are simple but
useful wrappers of common base R functions, which extend S3 generics or
provide default values for important parameters.
Author: Sven E. Templer
Maintainer: Sven E. Templer <sven.templer@gmail.com>
Diff between miscset versions 0.4 dated 2014-09-04 and 1.0.0 dated 2016-01-25
miscset-0.4/miscset/R/gapply.R |only miscset-0.4/miscset/R/ggplotlist.R |only miscset-0.4/miscset/inst/doc/miscset.Rnw |only miscset-0.4/miscset/inst/doc/miscset.pdf |only miscset-0.4/miscset/man/gapply.Rd |only miscset-0.4/miscset/man/ggplotlist.Rd |only miscset-0.4/miscset/vignettes/figure |only miscset-0.4/miscset/vignettes/framed.sty |only miscset-0.4/miscset/vignettes/miscset.Rnw |only miscset-1.0.0/miscset/DESCRIPTION | 22 ++- miscset-1.0.0/miscset/MD5 | 114 +++++++++-------- miscset-1.0.0/miscset/NAMESPACE | 61 +++++++-- miscset-1.0.0/miscset/NEWS | 62 ++++++++- miscset-1.0.0/miscset/R/RcppExports.R | 8 + miscset-1.0.0/miscset/R/aaa.R | 39 +++-- miscset-1.0.0/miscset/R/ciplot.R |only miscset-1.0.0/miscset/R/confint.R |only miscset-1.0.0/miscset/R/do.rbind.r |only miscset-1.0.0/miscset/R/duplicates.r |only miscset-1.0.0/miscset/R/enpaire.R | 26 +-- miscset-1.0.0/miscset/R/factorNA.r |only miscset-1.0.0/miscset/R/gghcl.R | 15 +- miscset-1.0.0/miscset/R/ggplotGrid.R |only miscset-1.0.0/miscset/R/gregexprind.R | 23 +-- miscset-1.0.0/miscset/R/help.index.R |only miscset-1.0.0/miscset/R/leading0.R | 11 - miscset-1.0.0/miscset/R/lload.R | 11 - miscset-1.0.0/miscset/R/lsall.R | 11 - miscset-1.0.0/miscset/R/mgrepl.R | 64 ++------- miscset-1.0.0/miscset/R/nunique.r |only miscset-1.0.0/miscset/R/p2star.R |only miscset-1.0.0/miscset/R/plotn.R |only miscset-1.0.0/miscset/R/rmall.R | 11 - miscset-1.0.0/miscset/R/scale0.R | 39 ++++- miscset-1.0.0/miscset/R/sort.data.frame.r |only miscset-1.0.0/miscset/R/squarematrix.R | 11 - miscset-1.0.0/miscset/R/strextr.R | 11 - miscset-1.0.0/miscset/R/strpart.R | 11 - miscset-1.0.0/miscset/R/strrev.R | 11 - miscset-1.0.0/miscset/R/textable.R | 157 +++++++++++++++++------- miscset-1.0.0/miscset/README.md | 77 +++++------ miscset-1.0.0/miscset/build/vignette.rds |binary miscset-1.0.0/miscset/inst/doc/miscset.R | 176 ++++++++++++++------------- miscset-1.0.0/miscset/inst/doc/miscset.Rmd |only miscset-1.0.0/miscset/inst/doc/miscset.html |only miscset-1.0.0/miscset/man/ciplot.Rd |only miscset-1.0.0/miscset/man/confint.Rd |only miscset-1.0.0/miscset/man/do.rbind.Rd |only miscset-1.0.0/miscset/man/duplicates.Rd |only miscset-1.0.0/miscset/man/enpaire.Rd | 5 miscset-1.0.0/miscset/man/factorNA.Rd |only miscset-1.0.0/miscset/man/gghcl.Rd | 5 miscset-1.0.0/miscset/man/ggplotGrid.Rd |only miscset-1.0.0/miscset/man/gregexprind.Rd | 20 +-- miscset-1.0.0/miscset/man/help.index.Rd |only miscset-1.0.0/miscset/man/leading0.Rd | 7 - miscset-1.0.0/miscset/man/lload.Rd | 8 - miscset-1.0.0/miscset/man/lsall.Rd | 5 miscset-1.0.0/miscset/man/mgrepl.Rd | 41 ++---- miscset-1.0.0/miscset/man/miscset-package.Rd | 17 +- miscset-1.0.0/miscset/man/ntri.Rd | 6 miscset-1.0.0/miscset/man/nunique.Rd |only miscset-1.0.0/miscset/man/p2star.Rd |only miscset-1.0.0/miscset/man/plotn.Rd |only miscset-1.0.0/miscset/man/rmall.Rd | 5 miscset-1.0.0/miscset/man/scale0.Rd | 23 ++- miscset-1.0.0/miscset/man/sort.Rd |only miscset-1.0.0/miscset/man/squarematrix.Rd | 5 miscset-1.0.0/miscset/man/strextr.Rd | 5 miscset-1.0.0/miscset/man/strpart.Rd | 5 miscset-1.0.0/miscset/man/strrev.Rd | 5 miscset-1.0.0/miscset/man/textable.Rd | 68 +++++++--- miscset-1.0.0/miscset/src/RcppExports.cpp | 14 -- miscset-1.0.0/miscset/src/ntri.cpp | 8 + miscset-1.0.0/miscset/vignettes/miscset.Rmd |only 75 files changed, 740 insertions(+), 483 deletions(-)
Title: 2D and 3D Hive Plots for R
Description: Creates and plots 2D and 3D hive plots. Hive plots are a unique method of displaying networks of many types in which node properties are mapped to axes using meaningful properties rather than being arbitrarily positioned. The hive plot concept was invented by Martin Krzywinski at the Genome Science Center (www.hiveplot.net/). Keywords: networks, food webs, linnet, systems biology, bioinformatics.
Author: Bryan A. Hanson [aut, cre],
Vesna Memisevic [ctb],
Jonathan Chung [ctb]
Maintainer: Bryan A. Hanson <hanson@depauw.edu>
Diff between HiveR versions 0.2.44 dated 2015-07-27 and 0.2.46 dated 2016-01-25
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 7 +++++-- R/chkHPD.R | 2 ++ inst/doc/HiveR.pdf |binary 5 files changed, 15 insertions(+), 10 deletions(-)
Title: Chi-Square and Exact Tests for Non-Parametric Functional
Dependencies
Description: Statistical hypothesis testing methods for non-parametric functional dependencies based on asymptotic chi-square and exact statistics. These tests were designed to reveal evidence for causality based on functional dependencies. They include asymptotic functional chi-square tests, an exact functional test, a comparative functional chi-square test, and also a comparative chi-square test. The normalized non-constant functional chi-square test was used by the Best Performer NMSUSongLab in HPN-DREAM (DREAM8) Breast Cancer Network Inference Challenges. These tests offer an advantage over regression analysis when a parametric functional form cannot be assumed.
Author: Yang Zhang, Hua Zhong, and Joe Song
Maintainer: Joe Song <joemsong@cs.nmsu.edu>
Diff between FunChisq versions 2.2.0 dated 2016-01-24 and 2.2.1 dated 2016-01-25
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS | 7 +++++++ R/FunChisq.R | 2 +- man/FunChisq-package.Rd | 16 +++++++++++----- man/cp.chisq.test.Rd | 6 ++++-- man/cp.fun.chisq.test.Rd | 6 +++--- 7 files changed, 37 insertions(+), 22 deletions(-)
Title: Object-Oriented Implementation of CRM Designs
Description: Implements a wide range of model-based dose
escalation designs, ranging from classical and modern continual
reassessment methods (CRMs) based on dose-limiting toxicity endpoints to
dual-endpoint designs taking into account a biomarker/efficacy outcome. The
focus is on Bayesian inference, making it very easy to setup a new design
with its own JAGS code. However, it is also possible to implement 3+3
designs for comparison or models with non-Bayesian estimation. The whole
package is written in a modular form in the S4 class system, making it very
flexible for adaptation to new models, escalation or stopping rules.
Author: Daniel Sabanes Bove <sabanesd@roche.com>,
Wai Yin Yeung <w.yeung1@lancaster.ac.uk>,
Giuseppe Palermo <giuseppe.palermo@roche.com>,
Thomas Jaki <jaki.thomas@gmail.com>
Maintainer: Daniel Sabanes Bove <sabanesd@roche.com>
Diff between crmPack versions 0.1.6 dated 2015-12-22 and 0.1.7 dated 2016-01-25
DESCRIPTION | 6 - MD5 | 54 ++++++++-------- R/Rules-methods.R | 2 inst/doc/example.R | 4 - inst/doc/example.Rnw | 6 - inst/doc/example.pdf |binary man/DualResponsesDesign-class.Rd | 2 man/DualResponsesSamplesDesign-class.Rd | 2 man/Effloglog-class.Rd | 4 - man/ExpEff.Rd | 2 man/fit.Rd | 2 man/fitGain.Rd | 2 man/gain.Rd | 4 - man/mcmc.Rd | 2 man/nextBest.Rd | 4 - man/plot-DataDual-ModelEff-method.Rd | 2 man/plot-PseudoDualSimulations-missing-method.Rd | 2 man/plot-PseudoDualSimulationsSummary-missing-method.Rd | 2 man/plot-Samples-ModelEff-method.Rd | 2 man/plotDualResponses.Rd | 4 - man/plotGain.Rd | 4 - man/show-PseudoDualSimulationsSummary-method.Rd | 2 man/simulate-DualResponsesDesign-method.Rd | 2 man/simulate-DualResponsesSamplesDesign-method.Rd | 2 man/stopTrial.Rd | 4 - man/summary-PseudoDualSimulations-method.Rd | 2 man/update-Effloglog-method.Rd | 2 vignettes/example.Rnw | 6 - 28 files changed, 66 insertions(+), 66 deletions(-)
Title: Markov Model for the Online Multi-Channel Attribution Problem
Description: Advertisers use a variety of online marketing channels to reach consumers and they want to know the degree each channel contributes to their marketing success. It's called the online multi-channel attribution problem. This package contains a probabilistic algorithm for the attribution problem. The model uses a k-order Markov representation to identifying structural correlations in the customer journey data. The package also contains three heuristic algorithms (first-touch, last-touch and linear-touch approach) for the same problem. The algorithms are implemented in C++. For customizations or interest in other statistical methodologies for web data analysis please contact <davide.altomare@gmail.com>.
Author: Davide Altomare
Maintainer: Davide Altomare <davide.altomare@gmail.com>
Diff between ChannelAttribution versions 1.4 dated 2016-01-08 and 1.5 dated 2016-01-25
DESCRIPTION | 6 +++--- MD5 | 6 +++--- man/ChannelAttribution-package.Rd | 4 ++-- src/ChannelAttribution.cpp | 4 +++- 4 files changed, 11 insertions(+), 9 deletions(-)
More information about ChannelAttribution at CRAN
Permanent link
More information about activpalProcessing at CRAN
Permanent link
Title: Turner Miscellaneous
Description: Miscellaneous data and utility functions
for manipulating data and your R environment.
Author: Stephen Turner <vustephen@gmail.com>
Maintainer: Stephen Turner <vustephen@gmail.com>
Diff between Tmisc versions 0.1.2 dated 2015-11-14 and 0.1.4 dated 2016-01-25
DESCRIPTION | 8 ++++---- MD5 | 16 +++++++++++----- NAMESPACE | 5 +++++ R/deseqresult2tbl.R | 2 +- R/lmp.R |only R/lowestnonzero.R |only R/read.cb.R | 14 +++++++++----- R/strSort.R |only man/lmp.Rd |only man/lowestnonzero.Rd |only man/read.cb.Rd | 6 ++++-- man/strSort.Rd |only 12 files changed, 34 insertions(+), 17 deletions(-)
Title: Analyze Shot Group Data
Description: Analyzes shooting data with respect to group shape,
precision, and accuracy. This includes graphical methods,
descriptive statistics, and inference tests using standard,
but also non-parametric and robust statistical methods.
Implements distributions for radial error in bivariate normal
variables. Works with files exported by OnTarget PC/TDS or
Taran, as well as with custom data files in text format.
Supports inference from range statistics like extreme spread.
Includes a set of web-based graphical user interfaces.
Author: Daniel Wollschlaeger
Maintainer: Daniel Wollschlaeger <dwoll@kuci.org>
Diff between shotGroups versions 0.6.2 dated 2015-11-12 and 0.7 dated 2016-01-25
shotGroups-0.6.2/shotGroups/man/getMaxParam.Rd |only shotGroups-0.7/shotGroups/DESCRIPTION | 16 shotGroups-0.7/shotGroups/MD5 | 138 +++-- shotGroups-0.7/shotGroups/NAMESPACE | 11 shotGroups-0.7/shotGroups/R/CEPs.R |only shotGroups-0.7/shotGroups/R/analyzeGroup.R | 5 shotGroups-0.7/shotGroups/R/combineData.R | 12 shotGroups-0.7/shotGroups/R/compareGroups.R | 82 +-- shotGroups-0.7/shotGroups/R/draw.R | 54 +- shotGroups-0.7/shotGroups/R/drawGroup.R | 25 shotGroups-0.7/shotGroups/R/efficiency.R |only shotGroups-0.7/shotGroups/R/getBoundingBox.R | 2 shotGroups-0.7/shotGroups/R/getCEP.R | 328 +++---------- shotGroups-0.7/shotGroups/R/getConfEll.R | 16 shotGroups-0.7/shotGroups/R/getHitProb.R | 130 +++-- shotGroups-0.7/shotGroups/R/getMOA.R | 106 ++-- shotGroups-0.7/shotGroups/R/getMaxPairDist.R | 10 shotGroups-0.7/shotGroups/R/getMinBBox.R | 4 shotGroups-0.7/shotGroups/R/getMinCircle.R | 18 shotGroups-0.7/shotGroups/R/groupLocation.R | 14 shotGroups-0.7/shotGroups/R/groupShape.R | 62 +- shotGroups-0.7/shotGroups/R/groupSpread.R | 22 shotGroups-0.7/shotGroups/R/grubbs.R | 64 ++ shotGroups-0.7/shotGroups/R/hoyt.R | 22 shotGroups-0.7/shotGroups/R/maxwell.R | 88 --- shotGroups-0.7/shotGroups/R/mvnEll.R | 12 shotGroups-0.7/shotGroups/R/range2sigma.R |only shotGroups-0.7/shotGroups/R/rayleigh.R | 52 +- shotGroups-0.7/shotGroups/R/readData.R | 14 shotGroups-0.7/shotGroups/R/rice.R | 23 shotGroups-0.7/shotGroups/R/runGUI.R |only shotGroups-0.7/shotGroups/R/simRingCount.R | 2 shotGroups-0.7/shotGroups/build/vignette.rds |binary shotGroups-0.7/shotGroups/data/DF300BLK.rda |binary shotGroups-0.7/shotGroups/data/DF300BLKhl.rda |binary shotGroups-0.7/shotGroups/data/DFcciHV.rda |binary shotGroups-0.7/shotGroups/data/DFcm.rda |binary shotGroups-0.7/shotGroups/data/DFdistr.rda |only shotGroups-0.7/shotGroups/data/DFinch.rda |binary shotGroups-0.7/shotGroups/data/DFlistCm.rda |binary shotGroups-0.7/shotGroups/data/DFsavage.rda |binary shotGroups-0.7/shotGroups/data/DFscar17.rda |binary shotGroups-0.7/shotGroups/data/DFtalon.rda |binary shotGroups-0.7/shotGroups/data/targets.rda |binary shotGroups-0.7/shotGroups/inst/ChangeLog | 58 ++ shotGroups-0.7/shotGroups/inst/doc/shotGroups.R | 34 + shotGroups-0.7/shotGroups/inst/doc/shotGroups.Rnw | 210 ++++++-- shotGroups-0.7/shotGroups/inst/doc/shotGroups.pdf |binary shotGroups-0.7/shotGroups/inst/shinyAnalyzeGroups |only shotGroups-0.7/shotGroups/inst/shinyAngularSize |only shotGroups-0.7/shotGroups/inst/shinyHitProbability |only shotGroups-0.7/shotGroups/inst/shinyRangeStatistics |only shotGroups-0.7/shotGroups/man/DFdistr.Rd |only shotGroups-0.7/shotGroups/man/compareGroups.Rd | 2 shotGroups-0.7/shotGroups/man/efficiency.Rd |only shotGroups-0.7/shotGroups/man/fromMOA.Rd | 13 shotGroups-0.7/shotGroups/man/getCEP.Rd | 31 - shotGroups-0.7/shotGroups/man/getDistance.Rd | 5 shotGroups-0.7/shotGroups/man/getHitProb.Rd | 15 shotGroups-0.7/shotGroups/man/getMOA.Rd | 15 shotGroups-0.7/shotGroups/man/getRayParam.Rd | 7 shotGroups-0.7/shotGroups/man/groupLocation.Rd | 2 shotGroups-0.7/shotGroups/man/groupShape.Rd | 10 shotGroups-0.7/shotGroups/man/groupSpread.Rd | 2 shotGroups-0.7/shotGroups/man/maxwell.Rd | 4 shotGroups-0.7/shotGroups/man/range2sigma.Rd |only shotGroups-0.7/shotGroups/man/runGUI.Rd |only shotGroups-0.7/shotGroups/man/shotGroups-package.Rd | 9 shotGroups-0.7/shotGroups/vignettes/distributions.pdf |binary shotGroups-0.7/shotGroups/vignettes/lit.bib | 138 +++++ shotGroups-0.7/shotGroups/vignettes/normal_cep_bias.png |only shotGroups-0.7/shotGroups/vignettes/normal_cep_no_bias.png |only shotGroups-0.7/shotGroups/vignettes/shotGroups.Rnw | 210 ++++++-- 73 files changed, 1262 insertions(+), 835 deletions(-)
Title: Blinder-Oaxaca Decomposition
Description: An implementation of the Blinder-Oaxaca decomposition for linear regression models.
Author: Marek Hlavac <hlavac@fas.harvard.edu>
Maintainer: Marek Hlavac <hlavac@fas.harvard.edu>
Diff between oaxaca versions 0.1.2 dated 2015-02-18 and 0.1.3 dated 2016-01-25
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- NAMESPACE | 2 ++ R/oaxaca-internal.R | 10 +++++----- build/vignette.rds |binary inst/CITATION | 6 +++--- inst/ChangeLog | 10 ++++++++-- inst/doc/oaxaca.pdf |binary man/oaxaca.Rd | 4 ++-- man/plot.oaxaca.Rd | 4 ++-- 10 files changed, 36 insertions(+), 28 deletions(-)
Title: Non-Parametric Measures of Actigraphy Data
Description: Computes interday stability (IS), intraday variability (IV) & the relative amplitude (RA) from actigraphy data as described in van Someren et al. (1999). Additionally, it also computes L5 (i.e. the 5 hours with lowest average actigraphy amplitude) and M10 (the 10 hours with highest average amplitude) as well as the respective start times. The flex versions will also compute the L-value for a user-defined number of minutes. IS describes the strength of coupling of a rhythm to supposedly stable zeitgebers. It varies between 0 (Gaussian Noise) and 1 for perfect IS. IV describes the fragmentation of a rhythm, i.e. the frequency and extent of transitions between rest and activity. It is near 0 for a perfect sine wave, about 2 for Gaussian noise and may be even higher when a definite ultradian period of about 2 hrs is present. RA is the relative amplitude of a rhythm. Note that to obtain reliable results, actigraphy data should cover a reasonable number of days.
Author: Christine Blume <christine.blume@sbg.ac.at>
Nayantara Santhi <n.santhi@surrey.ac.uk>
Manuel Schabus <manuel.schabus@sbg.ac.at>
Maintainer: Christine Blume <christine.blume@sbg.ac.at>
Diff between nparACT versions 0.2 dated 2016-01-11 and 0.3 dated 2016-01-25
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/nparACT_auxfunctions1.R | 10 ++++++---- R/nparACT_auxfunctions2.R | 20 +++++++++++++------- R/nparACT_base.R | 6 +++--- R/nparACT_base_loop.R | 6 +++--- R/nparACT_flex.R | 6 +++--- R/nparACT_flex_loop.R | 6 +++--- 8 files changed, 42 insertions(+), 34 deletions(-)
Title: Implementation of the DetMCD Algorithm (Robust and Deterministic
Estimation of Location and Scatter)
Description: Implementation of DetMCD, a new algorithm for robust and deterministic estimation of location and scatter. The benefits of robust and deterministic estimation are explained in Hubert, M., Rousseeuw, P.J. and Verdonck, T. (2012),"A deterministic algorithm for robust location and scatter", Journal of Computational and Graphical Statistics, Volume 21, Number 3, Pages 618--637.
Author: Vakili Kaveh [aut, cre],
Mia Hubert [ths]
Maintainer: Vakili Kaveh <vakili.kaveh.email@gmail.com>
Diff between DetMCD versions 0.0.2 dated 2015-02-03 and 0.0.3 dated 2016-01-25
DESCRIPTION | 14 +-- MD5 | 14 +-- NAMESPACE | 6 + R/DetMCD.R | 134 ++++++++++++++++++----------- man/DetMCD.Rd | 27 +++++ man/InQn.Rd |only src/DetMCD_1.cpp | 253 ++++++++++++++++++++++++++++++++++++------------------- src/DetMCD_2.cpp | 27 +++++ src/DetMCD_3.cpp |only 9 files changed, 319 insertions(+), 156 deletions(-)
Title: Deriving Expressions of Joint Interventional Distributions and
Transport Formulas in Causal Models
Description: Functions for identification and transportation of causal effects. Provides a conditional causal effect identification algorithm (IDC) by Ilya Shpitser and Judea Pearl, and algorithms for z-identifiability, transportability, z-transportability and meta-transportability of causal effects by Elias Bareinboim and Judea Pearl. All of the previously mentioned algorithms are based on a causal effect identification algorithm by Jin Tian.
Author: Santtu Tikka
Maintainer: Santtu Tikka <santtuth@gmail.com>
Diff between causaleffect versions 1.2.0 dated 2015-08-03 and 1.2.2 dated 2016-01-25
causaleffect-1.2.0/causaleffect/R/organizeTerms.R |only causaleffect-1.2.2/causaleffect/DESCRIPTION | 10 - causaleffect-1.2.2/causaleffect/MD5 | 111 +++++++++++-- causaleffect-1.2.2/causaleffect/NAMESPACE | 2 causaleffect-1.2.2/causaleffect/NEWS | 6 causaleffect-1.2.2/causaleffect/R/causal.effect.R | 21 ++ causaleffect-1.2.2/causaleffect/R/deconstruct.R |only causaleffect-1.2.2/causaleffect/R/factorize.R |only causaleffect-1.2.2/causaleffect/R/gather.R |only causaleffect-1.2.2/causaleffect/R/get.expression.R | 2 causaleffect-1.2.2/causaleffect/R/join.R |only causaleffect-1.2.2/causaleffect/R/meta.transport.R | 2 causaleffect-1.2.2/causaleffect/R/organize.terms.R |only causaleffect-1.2.2/causaleffect/R/parse.deconstruct.R |only causaleffect-1.2.2/causaleffect/R/parse.expression.R | 66 ++++--- causaleffect-1.2.2/causaleffect/R/parse.graphml.internal.R | 6 causaleffect-1.2.2/causaleffect/R/parse.graphml.standard.R | 6 causaleffect-1.2.2/causaleffect/R/parse.joint.R | 20 -- causaleffect-1.2.2/causaleffect/R/perm.R |only causaleffect-1.2.2/causaleffect/R/probability.R | 2 causaleffect-1.2.2/causaleffect/R/simplify.R |only causaleffect-1.2.2/causaleffect/R/transport.R | 2 causaleffect-1.2.2/causaleffect/R/wrap.dSep.R |only causaleffect-1.2.2/causaleffect/R/zzaux.effect.R | 2 causaleffect-1.2.2/causaleffect/build |only causaleffect-1.2.2/causaleffect/inst |only causaleffect-1.2.2/causaleffect/vignettes |only 27 files changed, 178 insertions(+), 80 deletions(-)
Title: Bayesian Cost Effectiveness Analysis
Description: Produces an economic evaluation of a Bayesian model in the form of MCMC simulations. Given suitable variables of cost and effectiveness / utility for two or more interventions, This package computes the most cost-effective alternative and produces graphical summaries and probabilistic sensitivity analysis.
Author: Gianluca Baio, Andrea Berardi, Anna Heath
Maintainer: Gianluca Baio <gianluca@stats.ucl.ac.uk>
Diff between BCEA versions 2.1-1 dated 2015-05-06 and 2.2-2 dated 2016-01-25
DESCRIPTION | 13 MD5 | 19 NAMESPACE | 6 R/bcea.R | 6788 +++++++++++++++++++++++++++++----------------------- data/Smoking.RData |binary data/Vaccine.RData |binary man/BCEA-package.Rd | 4 man/Smoking.Rd | 2 man/Vaccine.Rd | 2 man/evppi.Rd | 80 man/info.rank.Rd |only 11 files changed, 4003 insertions(+), 2911 deletions(-)
Title: Helps Manage Outliers in Sample Surveys
Description: At present, the only functionality is the calculation of optimal one-sided winsorizing cutoffs. The main function is optimal.onesided.cutoff.bygroup. It calculates the optimal tuning parameter for one-sided winsorisation, and so calculates winsorised values for a variable of interest. See the help file for this function for more details and an example.
Author: Robert Clark
Maintainer: "Robert Clark" <rclark@uow.edu.au>
Diff between surveyoutliers versions 0.0 dated 2015-12-21 and 0.1 dated 2016-01-25
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/optimal.onesided.cutoff.R | 11 +++++++---- R/robust.lm.onesided.R | 9 +++++---- 4 files changed, 19 insertions(+), 15 deletions(-)
More information about surveyoutliers at CRAN
Permanent link
Title: A GUI to View, Design and Export Various Graphs of Data
Description: Provides a graphical user interface for viewing and designing various types of graphs of the data. The graphs can be saved in different formats of an image.
Author: Dhammapal Bharne, Vaibhav Vindal
Maintainer: Dhammapal Bharne <dhammapalb@uohyd.ac.in>
Diff between plfMA versions 1.0.1 dated 2015-08-27 and 1.0.2 dated 2016-01-25
DESCRIPTION | 8 ++++---- MD5 | 7 ++++--- R/plfMA.R | 2 ++ man/plfMA-package.Rd |only man/plfMA.Rd | 33 +++++++++++++++++++++++---------- 5 files changed, 33 insertions(+), 17 deletions(-)
Title: Tools for Management of Survey Data and the Presentation of
Analysis Results
Description: One of the aims of this package is to make life easier for
useRs who deal with survey data sets. It provides an
infrastructure for the management of survey data including
value labels, definable missing values, recoding of variables,
production of code books, and import of (subsets of) SPSS and
Stata files. Further, it provides functionality to produce
tables and data frames of arbitrary descriptive statistics and
(almost) publication-ready tables of regression model
estimates, which can be exported to LaTeX and HTML.
Author: Martin Elff (with contributions from Christopher N. Lawrence, Dave Atkins, Jason W. Morgan, Achim Zeileis)
Maintainer: Martin Elff <memisc@elff.eu>
Diff between memisc versions 0.99.3 dated 2016-01-17 and 0.99.3.2 dated 2016-01-25
DESCRIPTION | 8 ++-- MD5 | 24 ++++++------ R/codebook-format-html.R | 12 +++--- build/vignette.rds |binary inst/ChangeLog | 6 +++ inst/NEWS.Rd | 1 inst/NEWS.html | 14 ++++++- inst/doc/anes48.html | 86 ++++++++++++++++++++++++++++++++++++-------- inst/doc/ftable-matrix.Rmd | 2 - inst/doc/items.Rmd | 2 - inst/doc/items.html | 54 ++++++++++++++++++++++----- vignettes/ftable-matrix.Rmd | 2 - vignettes/items.Rmd | 2 - 13 files changed, 161 insertions(+), 52 deletions(-)
Title: Ensemble Forecast Verification for Large Data Sets
Description: Set of tools to simplify application of atomic forecast verification
metrics for (comparative) verification of ensemble forecasts to large data sets.
The forecast metrics are imported from the 'SpecsVerification' package, and
additional forecast metrics are provided with this package. Alternatively,
new user-defined forecast scores can be implemented using the example scores
provided and applied using the functionality of this package.
Author: Jonas Bhend [aut, cre],
Jacopo Ripoldi [ctb],
Claudia Mignani [ctb],
Irina Mahlstein [ctb],
Rebecca Hiller [ctb],
Christoph Spirig [ctb],
Mark Liniger [ctb],
Andreas Weigel [ctb],
Joaqu'in Bedia Jimenez [ctb],
Matteo De Felice [ctb]
Maintainer: Jonas Bhend <jonas.bhend@meteoswiss.ch>
Diff between easyVerification versions 0.1.8 dated 2015-10-15 and 0.2.0 dated 2016-01-25
easyVerification-0.1.8/easyVerification/vignettes/ecoms_forecast_verification.pdf |only easyVerification-0.2.0/easyVerification/DESCRIPTION | 17 +- easyVerification-0.2.0/easyVerification/MD5 | 76 +++++----- easyVerification-0.2.0/easyVerification/NAMESPACE | 4 easyVerification-0.2.0/easyVerification/R/Ens2AFC.R | 34 ++-- easyVerification-0.2.0/easyVerification/R/EnsCorr.R | 13 - easyVerification-0.2.0/easyVerification/R/EnsError.R | 26 +-- easyVerification-0.2.0/easyVerification/R/EnsErrorss.R | 27 +-- easyVerification-0.2.0/easyVerification/R/EnsIgn.R |only easyVerification-0.2.0/easyVerification/R/EnsRoca.R | 23 ++- easyVerification-0.2.0/easyVerification/R/EnsRocss.R | 6 easyVerification-0.2.0/easyVerification/R/EnsSprErr.R | 24 +-- easyVerification-0.2.0/easyVerification/R/FairSprErr.R | 16 +- easyVerification-0.2.0/easyVerification/R/RcppExports.R |only easyVerification-0.2.0/easyVerification/R/convert2prob.R | 67 +++++--- easyVerification-0.2.0/easyVerification/R/count2prob.R | 6 easyVerification-0.2.0/easyVerification/R/easyVerification.R | 2 easyVerification-0.2.0/easyVerification/R/toymodel.R | 6 easyVerification-0.2.0/easyVerification/R/veriApply.R | 23 ++- easyVerification-0.2.0/easyVerification/R/veriUnwrap.R | 24 +-- easyVerification-0.2.0/easyVerification/R/zzz.R | 4 easyVerification-0.2.0/easyVerification/README.md | 14 + easyVerification-0.2.0/easyVerification/build/vignette.rds |binary easyVerification-0.2.0/easyVerification/inst/doc/ecoms_forecast_verification.pdf.asis |only easyVerification-0.2.0/easyVerification/man/Ens2AFC.Rd | 16 +- easyVerification-0.2.0/easyVerification/man/EnsCorr.Rd | 5 easyVerification-0.2.0/easyVerification/man/EnsError.Rd | 12 - easyVerification-0.2.0/easyVerification/man/EnsErrorss.Rd | 13 + easyVerification-0.2.0/easyVerification/man/EnsIgn.Rd |only easyVerification-0.2.0/easyVerification/man/EnsRoca.Rd | 2 easyVerification-0.2.0/easyVerification/man/EnsRocss.Rd | 2 easyVerification-0.2.0/easyVerification/man/EnsSprErr.Rd | 15 - easyVerification-0.2.0/easyVerification/man/FairSprErr.Rd | 10 - easyVerification-0.2.0/easyVerification/man/convert2prob.Rd | 37 +++- easyVerification-0.2.0/easyVerification/man/count2prob.Rd | 2 easyVerification-0.2.0/easyVerification/man/toymodel.Rd | 2 easyVerification-0.2.0/easyVerification/man/veriApply.Rd | 18 ++ easyVerification-0.2.0/easyVerification/man/veriUnwrap.Rd | 6 easyVerification-0.2.0/easyVerification/src |only easyVerification-0.2.0/easyVerification/vignettes/easyVerification.Rmd | 59 +++++-- easyVerification-0.2.0/easyVerification/vignettes/ecoms_forecast_verification.pdf.asis | 2 41 files changed, 371 insertions(+), 242 deletions(-)
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