Title: Fetch and Analyze Data from WaterML or CUAHSI WaterOneFlow Web
Service
Description: Lets you connect to any CUAHSI WaterOneFlow web service
from any hydroserver. To see list of available hydroservers, see http://
hiscentral.cuahsi.org. The package has five data download functions:
GetServices(): show all public HydroServers from the HIS Central Catalog.
HISCentral_GetSites() and HISCentral_GetSeriesCatalog(): search for sites or
time series from the HIS Central catalog based on geographic bounding box,
server, or keyword. GetVariables(): Show a data.frame with all variables
on the server. GetSites(): Show a data.frame with all sites on the server.
GetSiteInfo(): Show what variables, methods and quality control levels are
available at the specific site. GetValues(): Given a site code, variable code,
start time and endtime, fetch a data.frame of all the observation time series
data values. The data.frame has two columns: time and DataValue. This function
has an optional "daily" parameter, you can set daily="max", daily="min" or
daily="mean" to get aggregated daily values. The GetValues function can also
retrieve WaterML 1 or WaterML 2.0 data from a custom URL or from a local file.
The package also has five data upload functions: AddSites(), AddVariables(),
AddMethods(), AddSources(), and AddValues(). These functions can be used for
uploading data to a HydroServer Lite ODM database via the JSON data upload web
service interface.
Author: Jiri Kadlec [aut, cre]
Maintainer: Jiri Kadlec <jirikadlec2@gmail.com>
Diff between WaterML versions 1.5.0 dated 2015-09-21 and 1.6.0 dated 2016-01-26
DESCRIPTION | 42 ++++++++++--------- MD5 | 80 ++++++++++++++++++------------------- NAMESPACE | 2 R/AddMethods.R | 4 - R/AddSites.R | 3 - R/AddSources.R | 4 - R/AddValues.R | 5 +- R/AddVariables.R | 4 - R/GetServices.R | 2 R/GetSiteInfo.R | 2 R/GetSites.R | 2 R/GetValues.R | 15 ++++-- R/GetVariables.R | 2 R/HISCentral_GetSeriesCatalog.R | 2 R/HISCentral_GetSites.R | 2 R/MakeSOAPEnvelope.R | 3 - R/WaterMLVersion.R | 2 README.md | 4 - build/vignette.rds |binary inst/CITATION | 2 inst/doc/WaterML-Tutorial.R | 8 +++ inst/doc/WaterML-Tutorial.Rmd | 13 ++++++ inst/doc/WaterML-Tutorial.html | 11 ++++- man/AddMethods.Rd | 2 man/AddSites.Rd | 2 man/AddSources.Rd | 2 man/AddValues.Rd | 2 man/AddVariables.Rd | 2 man/GetServices.Rd | 2 man/GetSiteInfo.Rd | 2 man/GetSites.Rd | 2 man/GetValues.Rd | 11 +++-- man/GetVariables.Rd | 2 man/HISCentral_GetSeriesCatalog.Rd | 2 man/HISCentral_GetSites.Rd | 2 man/MakeSOAPEnvelope.Rd | 5 +- man/WaterML-package.Rd | 2 man/WaterMLVersion.Rd | 4 - man/WaterOneFlowNamespace.Rd | 2 man/WaterOneFlowVersion.Rd | 2 vignettes/WaterML-Tutorial.Rmd | 13 ++++++ 41 files changed, 166 insertions(+), 109 deletions(-)
Title: Bayesian Regularization for Feed-Forward Neural Networks
Description: Bayesian regularization for feed-forward neural networks.
Author: Paulino Perez Rodriguez, Daniel Gianola
Maintainer: Paulino Perez Rodriguez <perpdgo@colpos.mx>
Diff between brnn versions 0.5 dated 2015-01-08 and 0.6 dated 2016-01-26
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- NAMESPACE | 3 +++ inst/history.txt | 2 ++ src/unix/util_unix.c | 8 ++++---- 5 files changed, 19 insertions(+), 14 deletions(-)
Title: Develop and Run Spatially Explicit Discrete Event Simulation
Models
Description: Easily implement a variety of simulation models, with a focus on
spatially explicit agent based models. These include raster-based,
event-based, and agent-based models. The core simulation components are
built upon a discrete event simulation framework that facilitates
modularity, and easily enables the user to include additional functionality
by running user-built simulation modules. Included are numerous tools to
visualize raster and other maps. The suggested package `fastshp` can be
installed with `install.packages("fastshp", repos="http://rforge.net",
type="source")`.
Author: Alex M Chubaty [aut, cre],
Eliot J B McIntire [aut],
Yong Luo [ctb],
Steve Cumming [ctb],
Her Majesty the Queen in Right of Canada, as represented by the
Minister of Natural Resources Canada [cph]
Maintainer: Alex M Chubaty <alexander.chubaty@canada.ca>
Diff between SpaDES versions 1.0.1 dated 2015-08-10 and 1.1.0 dated 2016-01-26
SpaDES-1.0.1/SpaDES/inst/figs/SpaDES-overview-diagram.pdf |only SpaDES-1.0.1/SpaDES/inst/figs/plot-area-burned.pdf |only SpaDES-1.0.1/SpaDES/man/simList-extract-methods.Rd |only SpaDES-1.0.1/SpaDES/man/simList-inputs-outputs.Rd |only SpaDES-1.0.1/SpaDES/man/simList-paths.Rd |only SpaDES-1.0.1/SpaDES/tests/testthat/Rplots.pdf |only SpaDES-1.1.0/SpaDES/DESCRIPTION | 41 SpaDES-1.1.0/SpaDES/MD5 | 423 SpaDES-1.1.0/SpaDES/NAMESPACE | 834 - SpaDES-1.1.0/SpaDES/NEWS | 324 SpaDES-1.1.0/SpaDES/R/SELES.R | 540 - SpaDES-1.1.0/SpaDES/R/agent.R | 174 SpaDES-1.1.0/SpaDES/R/check.R | 527 - SpaDES-1.1.0/SpaDES/R/checkpoint.R | 584 - SpaDES-1.1.0/SpaDES/R/environment.R | 400 SpaDES-1.1.0/SpaDES/R/initialize.R | 699 - SpaDES-1.1.0/SpaDES/R/load.R | 731 - SpaDES-1.1.0/SpaDES/R/mapReduce.R | 163 SpaDES-1.1.0/SpaDES/R/misc-methods.R | 1325 +- SpaDES-1.1.0/SpaDES/R/module-dependencies-class.R | 384 SpaDES-1.1.0/SpaDES/R/module-dependencies-methods.R | 529 - SpaDES-1.1.0/SpaDES/R/module-repository.R | 568 - 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SpaDES-1.1.0/SpaDES/R/splitRaster.R | 188 SpaDES-1.1.0/SpaDES/R/spread-process.R | 779 + SpaDES-1.1.0/SpaDES/R/times.R | 694 - SpaDES-1.1.0/SpaDES/R/zzz.R | 30 SpaDES-1.1.0/SpaDES/README.md | 131 SpaDES-1.1.0/SpaDES/build/vignette.rds |binary SpaDES-1.1.0/SpaDES/demo/00Index | 4 SpaDES-1.1.0/SpaDES/demo/spades-simulation.R | 97 SpaDES-1.1.0/SpaDES/inst/doc/i-introduction.R | 78 SpaDES-1.1.0/SpaDES/inst/doc/i-introduction.Rmd | 651 - SpaDES-1.1.0/SpaDES/inst/doc/i-introduction.html | 876 - SpaDES-1.1.0/SpaDES/inst/doc/ii-modules.R | 679 - SpaDES-1.1.0/SpaDES/inst/doc/ii-modules.Rmd | 1591 +-- SpaDES-1.1.0/SpaDES/inst/doc/ii-modules.html | 2297 ++--- SpaDES-1.1.0/SpaDES/inst/doc/iii-plotting.R | 306 SpaDES-1.1.0/SpaDES/inst/doc/iii-plotting.Rmd | 830 - SpaDES-1.1.0/SpaDES/inst/doc/iii-plotting.html | 1068 -- SpaDES-1.1.0/SpaDES/inst/figs/SpaDES-overview-diagram.png |only SpaDES-1.1.0/SpaDES/inst/sampleModules/SpaDES_sampleModules/SpaDES_sampleModules.R | 42 SpaDES-1.1.0/SpaDES/inst/sampleModules/SpaDES_sampleModules/SpaDES_sampleModules.Rmd | 88 SpaDES-1.1.0/SpaDES/inst/sampleModules/caribouMovement/caribouMovement.R | 279 SpaDES-1.1.0/SpaDES/inst/sampleModules/fireSpread/fireSpread.R | 336 SpaDES-1.1.0/SpaDES/inst/sampleModules/randomLandscapes/randomLandscapes.R | 214 SpaDES-1.1.0/SpaDES/man/Plot.Rd | 581 - SpaDES-1.1.0/SpaDES/man/SELESagentLocation.Rd | 58 SpaDES-1.1.0/SpaDES/man/SELESnumAgents.Rd | 60 SpaDES-1.1.0/SpaDES/man/SELESprobInit.Rd | 86 SpaDES-1.1.0/SpaDES/man/SELEStransitions.Rd | 62 SpaDES-1.1.0/SpaDES/man/SpaDES-package.Rd | 764 - SpaDES-1.1.0/SpaDES/man/addDepends.Rd | 58 SpaDES-1.1.0/SpaDES/man/adj.Rd | 178 SpaDES-1.1.0/SpaDES/man/append_attr.Rd | 78 SpaDES-1.1.0/SpaDES/man/arrangeViewports.Rd | 48 SpaDES-1.1.0/SpaDES/man/arrangement-class.Rd | 144 SpaDES-1.1.0/SpaDES/man/assignSpaDES.Rd | 65 SpaDES-1.1.0/SpaDES/man/cache.Rd | 82 SpaDES-1.1.0/SpaDES/man/changeObjEnv.Rd | 125 SpaDES-1.1.0/SpaDES/man/checkModule.Rd |only 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| 87 SpaDES-1.1.0/SpaDES/man/emptyMetadata.Rd |only SpaDES-1.1.0/SpaDES/man/equalExtent.Rd | 44 SpaDES-1.1.0/SpaDES/man/eventDiagram.Rd | 110 SpaDES-1.1.0/SpaDES/man/existsSpaDES.Rd | 52 SpaDES-1.1.0/SpaDES/man/fileTable.Rd |only SpaDES-1.1.0/SpaDES/man/findFactors.Rd | 38 SpaDES-1.1.0/SpaDES/man/ganttStatus.Rd | 58 SpaDES-1.1.0/SpaDES/man/gaussmap.Rd | 97 SpaDES-1.1.0/SpaDES/man/getColors.Rd | 59 SpaDES-1.1.0/SpaDES/man/getFileName.Rd | 54 SpaDES-1.1.0/SpaDES/man/getModuleVersion.Rd | 58 SpaDES-1.1.0/SpaDES/man/getSpaDES.Rd | 48 SpaDES-1.1.0/SpaDES/man/grid-functions.Rd | 46 SpaDES-1.1.0/SpaDES/man/heading.Rd | 127 SpaDES-1.1.0/SpaDES/man/identifyGrobToPlot.Rd | 78 SpaDES-1.1.0/SpaDES/man/inRange.Rd | 59 SpaDES-1.1.0/SpaDES/man/initialize-method.Rd | 34 SpaDES-1.1.0/SpaDES/man/initiateAgents.Rd | 157 SpaDES-1.1.0/SpaDES/man/inputObjects.Rd |only SpaDES-1.1.0/SpaDES/man/layerNames.Rd | 102 SpaDES-1.1.0/SpaDES/man/loadFiles.Rd | 240 SpaDES-1.1.0/SpaDES/man/loadPackages.Rd | 97 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Title: Meta-Analysis of Region-Based Tests of Rare DNA Variants
Description: Computes necessary information to meta analyze region-based
tests for rare genetic variants (e.g. SKAT, T1) in individual studies, and
performs meta analysis.
Author: Arie Voorman, Jennifer Brody, Han Chen, Thomas Lumley, Brian Davis
Maintainer: Brian Davis <Brian.Davis281@gmail.com>
Diff between seqMeta versions 1.6.0 dated 2015-06-25 and 1.6.5 dated 2016-01-26
DESCRIPTION | 15 +-- MD5 | 54 +++++------ NAMESPACE | 24 +++++ R/burdenMeta.R | 16 +-- R/check_format_skat.R | 8 - R/coxlr.fit.R | 3 R/pchisqsum2.R | 6 - R/prepAdjust.R | 2 R/prepCox.R | 34 +++---- R/prepScores.R | 70 +++++++-------- R/prepScores2.R | 194 ++++++++++++++++++++++--------------------- R/seqMeta.R | 5 - R/singlesnpMeta.R | 12 +- R/skatMeta.R | 8 - R/skatOMeta.R | 23 ++--- R/utils.R | 4 README.md | 13 ++ build/vignette.rds |binary man/burdenMeta.Rd | 11 +- man/prepCondScores.Rd | 47 +++++----- man/prepScores.Rd | 100 +++++++++++----------- man/prepScores2.Rd | 149 ++++++++++++++++++++------------- man/seqMeta.Rd | 2 man/singlesnpMeta.Rd | 20 ++-- man/skatMeta.Rd | 29 +++--- man/skatOMeta.Rd | 49 +++++----- src/coxfit6.c | 36 ++++++- tests/testthat/test-issue2.R | 36 +++---- 28 files changed, 541 insertions(+), 429 deletions(-)
Title: Dental Surface Complexity Measurement Tools
Description: Surface topography calculations of Dirichlet's normal energy,
relief index, and orientation patch count for teeth using scans of enamel caps.
Importantly, for the relief index and orientation patch count calculations to
work, the scanned tooth files must be oriented with the occlusal plane parallel
to the x and y axes, and perpendicular to the z axis. The files should also be
simplified, and smoothed in some other software prior to uploading into R.
Author: James D. Pampush [aut, cre, cph],
Julia M. Winchester [aut, cph],
Paul E. Morse [aut, cph],
Alexander Q. Vining [aut, cph]
Maintainer: James D. Pampush <jdpampush@gmail.com>
Diff between molaR versions 0.3 dated 2016-01-13 and 1.0 dated 2016-01-26
DESCRIPTION | 8 +- MD5 | 26 ++++---- NAMESPACE | 3 R/DNE.R | 20 ++---- R/DNE3d.R | 2 R/OPC.R | 13 +++- R/OPC3d.R | 91 +++++++++++++++++------------ R/RFI3d.R | 161 +++++++++++++++++++++++------------------------------ R/molaR_Batch.R |only build/molaR.pdf |binary build/vignette.rds |binary man/OPC.Rd | 4 - man/OPC3d.Rd | 5 - man/RFI3d.Rd | 6 - man/molaR_Batch.Rd |only 15 files changed, 171 insertions(+), 168 deletions(-)
Title: Least-Squares Means
Description: Obtain least-squares means for many linear, generalized linear,
and mixed models. Compute contrasts or linear functions of least-squares
means, and comparisons of slopes. Plots and compact letter displays.
Author: Russell Lenth [aut, cre],
Maxime Herv\'e [ctb]
Maintainer: Russell Lenth <russell-lenth@uiowa.edu>
Diff between lsmeans versions 2.21-1 dated 2015-12-17 and 2.22 dated 2016-01-26
DESCRIPTION | 10 +-- MD5 | 38 ++++++------- NAMESPACE | 8 ++ R/betareg.support.R |only R/lsmeans.R | 128 ++++++++++++++++++++++++++++++-------------- R/ref.grid.R | 24 +++++--- R/summary.R | 14 +++- build/vignette.rds |binary inst/CITATION |only inst/NEWS | 13 ++++ inst/doc/extending.pdf |binary inst/doc/using-lsmeans.R | 114 +++++++++++++++++++++------------------ inst/doc/using-lsmeans.pdf |binary inst/doc/using-lsmeans.rnw | 10 ++- man/contrast.Rd | 25 ++++++-- man/lsmeans-package.Rd | 4 + man/models.Rd | 7 ++ man/summary.Rd | 14 ++++ man/update.Rd | 15 ++++- tests/tests1.Rout.save | 32 ++++++----- vignettes/using-lsmeans.rnw | 10 ++- 21 files changed, 309 insertions(+), 157 deletions(-)
Title: Iterative Bias Reduction
Description: Multivariate smoothing using iterative bias reduction with kernel, thin plate splines, Duchon splines or low rank splines.
Author: Pierre-Andre Cornillon, Nicolas Hengartner, Eric Matzner-Lober
Maintainer: "Pierre-Andre Cornillon" <pierre-andre.cornillon@univ-rennes2.fr>
Diff between ibr versions 2.0-0 dated 2015-10-19 and 2.0-2 dated 2016-01-26
ibr-2.0-0/ibr/tests/testthat/preslrds.rda |only ibr-2.0-0/ibr/tests/testthat/preslrtps.rda |only ibr-2.0-2/ibr/DESCRIPTION | 8 ++++---- ibr-2.0-2/ibr/MD5 | 14 ++++++-------- ibr-2.0-2/ibr/R/plot.ibr.R | 2 +- ibr-2.0-2/ibr/tests/testthat/reslrds.rda |binary ibr-2.0-2/ibr/tests/testthat/reslrtps.rda |binary ibr-2.0-2/ibr/tests/testthat/test_dim2.R | 11 ++--------- ibr-2.0-2/ibr/tests/testthat/test_dim5.R | 11 ++--------- 9 files changed, 15 insertions(+), 31 deletions(-)
Title: High-Dimensional Penalized Regression
Description: Algorithms for lasso and fused-lasso problems: implementation of
the lars algorithm for lasso and fusion penalization and EM-based
algorithms for (logistic) lasso and fused-lasso penalization.
Author: Quentin Grimonprez [aut, cre],
Serge Iovleff [aut]
Maintainer: Quentin Grimonprez <quentin.grimonprez@inria.fr>
Diff between HDPenReg versions 0.92 dated 2015-09-07 and 0.93.1 dated 2016-01-26
HDPenReg-0.92/HDPenReg/src/HDPenReg/lassoModels/EM.cpp |only HDPenReg-0.92/HDPenReg/src/HDPenReg/lassoModels/EnetPenalty.cpp |only HDPenReg-0.92/HDPenReg/src/HDPenReg/lassoModels/EnetPenalty.h |only HDPenReg-0.92/HDPenReg/src/HDPenReg/lassoModels/FusedLasso.cpp |only HDPenReg-0.92/HDPenReg/src/HDPenReg/lassoModels/Lasso.cpp |only HDPenReg-0.92/HDPenReg/src/HDPenReg/lassoModels/LassoPenalty.cpp |only HDPenReg-0.92/HDPenReg/src/HDPenReg/lassoModels/LogisticFusedLasso.cpp |only HDPenReg-0.92/HDPenReg/src/HDPenReg/lassoModels/LogisticFusedLassoPenalty.cpp |only HDPenReg-0.92/HDPenReg/src/HDPenReg/lassoModels/LogisticFusedLassoPenalty.h |only HDPenReg-0.92/HDPenReg/src/HDPenReg/lassoModels/LogisticLasso.cpp |only HDPenReg-0.92/HDPenReg/src/HDPenReg/lassoModels/LogisticLassoPenalty.cpp |only HDPenReg-0.92/HDPenReg/src/HDPenReg/lassoModels/LogisticLassoPenalty.h |only HDPenReg-0.92/HDPenReg/src/HDPenReg/lassoModels/makefile |only HDPenReg-0.92/HDPenReg/src/emR.cpp |only HDPenReg-0.92/HDPenReg/src/emR.h |only HDPenReg-0.93.1/HDPenReg/DESCRIPTION | 31 - HDPenReg-0.93.1/HDPenReg/MD5 | 154 ++-- HDPenReg-0.93.1/HDPenReg/NAMESPACE | 7 HDPenReg-0.93.1/HDPenReg/NEWS | 13 HDPenReg-0.93.1/HDPenReg/R/EM.R | 238 ++++--- HDPenReg-0.93.1/HDPenReg/R/HDPenReg-package.R | 15 HDPenReg-0.93.1/HDPenReg/R/LarsPath.R | 163 +++-- HDPenReg-0.93.1/HDPenReg/R/cvEM.R | 192 +++--- HDPenReg-0.93.1/HDPenReg/R/cvlars.R | 80 +- HDPenReg-0.93.1/HDPenReg/R/lars.R | 32 - HDPenReg-0.93.1/HDPenReg/R/predict.R | 4 HDPenReg-0.93.1/HDPenReg/R/simulation.R | 174 ++--- HDPenReg-0.93.1/HDPenReg/TODO |only HDPenReg-0.93.1/HDPenReg/cleanup | 3 HDPenReg-0.93.1/HDPenReg/inst/doc/HDPenReg.pdf |binary HDPenReg-0.93.1/HDPenReg/man/EMcvfusedlasso.Rd | 20 HDPenReg-0.93.1/HDPenReg/man/EMcvlasso.Rd | 40 - HDPenReg-0.93.1/HDPenReg/man/EMfusedlasso.Rd | 26 HDPenReg-0.93.1/HDPenReg/man/EMlasso.Rd | 29 HDPenReg-0.93.1/HDPenReg/man/HDPenReg-package.Rd | 13 HDPenReg-0.93.1/HDPenReg/man/HDcvlars.Rd | 6 HDPenReg-0.93.1/HDPenReg/man/HDfusion.Rd | 14 HDPenReg-0.93.1/HDPenReg/man/HDlars.Rd | 21 HDPenReg-0.93.1/HDPenReg/man/LarsPath-class.Rd | 12 HDPenReg-0.93.1/HDPenReg/man/coef.LarsPath.Rd | 5 HDPenReg-0.93.1/HDPenReg/man/coeff.Rd | 5 HDPenReg-0.93.1/HDPenReg/man/computeCoefficients.Rd | 4 HDPenReg-0.93.1/HDPenReg/man/listToMatrix.Rd |only HDPenReg-0.93.1/HDPenReg/man/plot-methods.Rd | 12 HDPenReg-0.93.1/HDPenReg/man/plot.HDcvlars.Rd | 2 HDPenReg-0.93.1/HDPenReg/man/plotCoefficient.Rd | 7 HDPenReg-0.93.1/HDPenReg/man/predict.LarsPath.Rd | 2 HDPenReg-0.93.1/HDPenReg/man/simul.Rd | 4 HDPenReg-0.93.1/HDPenReg/src/EMPenModels.cpp |only HDPenReg-0.93.1/HDPenReg/src/EMPenModels.h |only HDPenReg-0.93.1/HDPenReg/src/HDPenReg/EMCVmain.cpp |only HDPenReg-0.93.1/HDPenReg/src/HDPenReg/EMmain.cpp |only HDPenReg-0.93.1/HDPenReg/src/HDPenReg/Makefile | 14 HDPenReg-0.93.1/HDPenReg/src/HDPenReg/lars.mk | 19 HDPenReg-0.93.1/HDPenReg/src/HDPenReg/lars/Cvlars.cpp | 2 HDPenReg-0.93.1/HDPenReg/src/HDPenReg/lars/Cvlars.h | 2 HDPenReg-0.93.1/HDPenReg/src/HDPenReg/lars/PathState.h | 2 HDPenReg-0.93.1/HDPenReg/src/HDPenReg/larsRmain.cpp |only HDPenReg-0.93.1/HDPenReg/src/HDPenReg/lassoModels.mk | 30 HDPenReg-0.93.1/HDPenReg/src/HDPenReg/lassoModels/CV.cpp | 299 ++++----- HDPenReg-0.93.1/HDPenReg/src/HDPenReg/lassoModels/CV.h | 23 HDPenReg-0.93.1/HDPenReg/src/HDPenReg/lassoModels/CVFusedLasso.h | 94 +-- HDPenReg-0.93.1/HDPenReg/src/HDPenReg/lassoModels/CVLasso.h | 50 + HDPenReg-0.93.1/HDPenReg/src/HDPenReg/lassoModels/EM.h | 144 +++- HDPenReg-0.93.1/HDPenReg/src/HDPenReg/lassoModels/EnetSolver.cpp | 57 - HDPenReg-0.93.1/HDPenReg/src/HDPenReg/lassoModels/EnetSolver.h | 24 HDPenReg-0.93.1/HDPenReg/src/HDPenReg/lassoModels/FusedLasso.h | 179 +---- HDPenReg-0.93.1/HDPenReg/src/HDPenReg/lassoModels/FusedLassoPenalty.cpp | 147 +--- HDPenReg-0.93.1/HDPenReg/src/HDPenReg/lassoModels/FusedLassoPenalty.h | 138 +--- HDPenReg-0.93.1/HDPenReg/src/HDPenReg/lassoModels/FusedLassoSolver.cpp | 301 +++++---- HDPenReg-0.93.1/HDPenReg/src/HDPenReg/lassoModels/FusedLassoSolver.h | 109 +-- HDPenReg-0.93.1/HDPenReg/src/HDPenReg/lassoModels/IAlgo.h | 18 HDPenReg-0.93.1/HDPenReg/src/HDPenReg/lassoModels/IMeasure.h | 43 - HDPenReg-0.93.1/HDPenReg/src/HDPenReg/lassoModels/IPenalizedSolver.h | 223 ++++--- HDPenReg-0.93.1/HDPenReg/src/HDPenReg/lassoModels/IPenalty.h | 15 HDPenReg-0.93.1/HDPenReg/src/HDPenReg/lassoModels/Lasso.h | 161 +---- HDPenReg-0.93.1/HDPenReg/src/HDPenReg/lassoModels/LassoPenalty.h | 106 +-- HDPenReg-0.93.1/HDPenReg/src/HDPenReg/lassoModels/LassoSolver.cpp | 289 +++++---- HDPenReg-0.93.1/HDPenReg/src/HDPenReg/lassoModels/LassoSolver.h | 101 +-- HDPenReg-0.93.1/HDPenReg/src/HDPenReg/lassoModels/LogisticFusedLasso.h | 185 +---- HDPenReg-0.93.1/HDPenReg/src/HDPenReg/lassoModels/LogisticFusedLassoSolver.cpp | 310 +++++----- HDPenReg-0.93.1/HDPenReg/src/HDPenReg/lassoModels/LogisticFusedLassoSolver.h | 131 ++-- HDPenReg-0.93.1/HDPenReg/src/HDPenReg/lassoModels/LogisticLasso.h | 171 +---- HDPenReg-0.93.1/HDPenReg/src/HDPenReg/lassoModels/LogisticLassoSolver.cpp | 266 ++++---- HDPenReg-0.93.1/HDPenReg/src/HDPenReg/lassoModels/LogisticLassoSolver.h | 121 +-- HDPenReg-0.93.1/HDPenReg/src/HDPenReg/lassoModels/PenalizedModels.h | 268 +++----- HDPenReg-0.93.1/HDPenReg/src/Makevars | 18 HDPenReg-0.93.1/HDPenReg/src/larsR.cpp | 221 ------- HDPenReg-0.93.1/HDPenReg/src/larsR.h | 13 89 files changed, 2699 insertions(+), 2923 deletions(-)
Title: Data Checking
Description: Checks column names,
column classes, values, keys, joins, vectors and scalars.
If the user-defined conditions are met the function
returns an invisible copy of the data frame, vector or scalar.
Otherwise the function throws an informative error.
Author: Joe Thorley [aut, cre]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between datacheckr versions 0.0.2 dated 2016-01-04 and 0.1.0 dated 2016-01-26
datacheckr-0.0.2/datacheckr/man/check_data.Rd |only datacheckr-0.0.2/datacheckr/tests/testthat/test-check-data-frame.R |only datacheckr-0.1.0/datacheckr/DESCRIPTION | 21 datacheckr-0.1.0/datacheckr/MD5 | 92 ++- datacheckr-0.1.0/datacheckr/NAMESPACE | 22 datacheckr-0.1.0/datacheckr/NEWS.md | 26 + datacheckr-0.1.0/datacheckr/R/check-colnames.R |only datacheckr-0.1.0/datacheckr/R/check-cols.R |only datacheckr-0.1.0/datacheckr/R/check-data-frame.R |only datacheckr-0.1.0/datacheckr/R/check-data-values.R | 24 datacheckr-0.1.0/datacheckr/R/check-data.R | 108 +--- datacheckr-0.1.0/datacheckr/R/check-data2.R |only datacheckr-0.1.0/datacheckr/R/check-data3.R |only datacheckr-0.1.0/datacheckr/R/check-join.R |only datacheckr-0.1.0/datacheckr/R/check-key.R |only datacheckr-0.1.0/datacheckr/R/check-rows.R |only datacheckr-0.1.0/datacheckr/R/check-scalar.R |only datacheckr-0.1.0/datacheckr/R/check-stop-set.R | 22 datacheckr-0.1.0/datacheckr/R/check-values-values.R |only datacheckr-0.1.0/datacheckr/R/check-values.R |only datacheckr-0.1.0/datacheckr/R/check-vector-value.R | 33 - datacheckr-0.1.0/datacheckr/R/check-vector-values.R | 17 datacheckr-0.1.0/datacheckr/R/check-vector.R |only datacheckr-0.1.0/datacheckr/R/package.R | 3 datacheckr-0.1.0/datacheckr/R/utils.R | 70 ++ datacheckr-0.1.0/datacheckr/README.md | 14 datacheckr-0.1.0/datacheckr/build/vignette.rds |binary datacheckr-0.1.0/datacheckr/inst/doc/datacheckr.R | 32 - datacheckr-0.1.0/datacheckr/inst/doc/datacheckr.Rmd | 38 - datacheckr-0.1.0/datacheckr/inst/doc/datacheckr.html | 46 - datacheckr-0.1.0/datacheckr/inst/doc/nycflights13.R |only datacheckr-0.1.0/datacheckr/inst/doc/nycflights13.Rmd |only datacheckr-0.1.0/datacheckr/inst/doc/nycflights13.html |only datacheckr-0.1.0/datacheckr/man/check_cols.Rd |only datacheckr-0.1.0/datacheckr/man/check_count.Rd |only datacheckr-0.1.0/datacheckr/man/check_data1.Rd |only datacheckr-0.1.0/datacheckr/man/check_data2.Rd |only datacheckr-0.1.0/datacheckr/man/check_data3.Rd |only datacheckr-0.1.0/datacheckr/man/check_data_frame.Rd |only datacheckr-0.1.0/datacheckr/man/check_date.Rd |only datacheckr-0.1.0/datacheckr/man/check_flag.Rd |only datacheckr-0.1.0/datacheckr/man/check_int.Rd |only datacheckr-0.1.0/datacheckr/man/check_join.Rd |only datacheckr-0.1.0/datacheckr/man/check_key.Rd |only datacheckr-0.1.0/datacheckr/man/check_number.Rd |only datacheckr-0.1.0/datacheckr/man/check_rows.Rd |only datacheckr-0.1.0/datacheckr/man/check_scalar.Rd |only datacheckr-0.1.0/datacheckr/man/check_string.Rd |only datacheckr-0.1.0/datacheckr/man/check_time.Rd |only datacheckr-0.1.0/datacheckr/man/check_values.Rd |only datacheckr-0.1.0/datacheckr/man/check_vector.Rd |only datacheckr-0.1.0/datacheckr/man/datacheckr.Rd | 2 datacheckr-0.1.0/datacheckr/man/max_integer.Rd | 3 datacheckr-0.1.0/datacheckr/man/max_nrow.Rd |only datacheckr-0.1.0/datacheckr/man/min_integer.Rd |only datacheckr-0.1.0/datacheckr/tests/testthat/test-check-cols.R |only datacheckr-0.1.0/datacheckr/tests/testthat/test-check-count.R |only datacheckr-0.1.0/datacheckr/tests/testthat/test-check-data.R | 190 +++++-- datacheckr-0.1.0/datacheckr/tests/testthat/test-check-data123.R |only datacheckr-0.1.0/datacheckr/tests/testthat/test-check-date.R |only datacheckr-0.1.0/datacheckr/tests/testthat/test-check-flag.R |only datacheckr-0.1.0/datacheckr/tests/testthat/test-check-join.R |only datacheckr-0.1.0/datacheckr/tests/testthat/test-check-key.R |only datacheckr-0.1.0/datacheckr/tests/testthat/test-check-number.R |only datacheckr-0.1.0/datacheckr/tests/testthat/test-check-rows.R |only datacheckr-0.1.0/datacheckr/tests/testthat/test-check-scalar.R |only datacheckr-0.1.0/datacheckr/tests/testthat/test-check-string.R |only datacheckr-0.1.0/datacheckr/tests/testthat/test-check-values.R | 248 +++++++++- datacheckr-0.1.0/datacheckr/tests/testthat/test-check-vector.R |only datacheckr-0.1.0/datacheckr/tests/testthat/test-data-frame.R |only datacheckr-0.1.0/datacheckr/tests/testthat/test-max-nrow.R |only datacheckr-0.1.0/datacheckr/vignettes/datacheckr.Rmd | 38 - datacheckr-0.1.0/datacheckr/vignettes/nycflights13.Rmd |only 73 files changed, 730 insertions(+), 319 deletions(-)
Title: Exploratory Chemometrics for Spectroscopy
Description: A collection of functions for top-down exploratory data analysis of spectral data obtained via nuclear magnetic resonance (NMR), infrared (IR) or Raman spectroscopy. Includes functions for plotting and inspecting spectra, peak alignment, hierarchical cluster analysis (HCA), principal components analysis (PCA) and model-based clustering. Robust methods appropriate for this type of high-dimensional data are available. ChemoSpec is designed with metabolomics data sets in mind, where the samples fall into groups such as treatment and control. Graphical output is formatted consistently for publication quality plots. ChemoSpec is intended to be very user friendly and help you get usable results quickly. A vignette covering typical operations is available.
Author: Bryan A. Hanson DePauw University, Greencastle Indiana USA
Maintainer: Bryan A. Hanson <hanson@depauw.edu>
Diff between ChemoSpec versions 4.1.15 dated 2015-07-24 and 4.2.8 dated 2016-01-26
ChemoSpec-4.1.15/ChemoSpec/R/chooseLvls.R |only ChemoSpec-4.1.15/ChemoSpec/R/cleanSTOCSYpeaks.R |only ChemoSpec-4.1.15/ChemoSpec/R/collapseRowsOrCols.R |only ChemoSpec-4.1.15/ChemoSpec/R/corSpectra.R |only ChemoSpec-4.1.15/ChemoSpec/R/covSpectra.R |only ChemoSpec-4.1.15/ChemoSpec/R/covSpectraJS.R |only ChemoSpec-4.1.15/ChemoSpec/R/sortCrossPeaks.R |only ChemoSpec-4.1.15/ChemoSpec/inst/extdata/cS.css |only ChemoSpec-4.1.15/ChemoSpec/inst/extdata/cS_brushNguides.js |only ChemoSpec-4.1.15/ChemoSpec/inst/extdata/cS_controls.js |only ChemoSpec-4.1.15/ChemoSpec/inst/extdata/cS_globals.js |only ChemoSpec-4.1.15/ChemoSpec/inst/extdata/cS_main.js |only ChemoSpec-4.1.15/ChemoSpec/inst/extdata/cS_spectra.js |only ChemoSpec-4.1.15/ChemoSpec/inst/extdata/covSpectraJS.html |only ChemoSpec-4.1.15/ChemoSpec/man/chooseLvls.Rd |only ChemoSpec-4.1.15/ChemoSpec/man/cleanSTOCSYpeaks.Rd |only ChemoSpec-4.1.15/ChemoSpec/man/corSpectra.Rd |only ChemoSpec-4.1.15/ChemoSpec/man/sortCrossPeaks.Rd |only ChemoSpec-4.2.8/ChemoSpec/DESCRIPTION | 10 ChemoSpec-4.2.8/ChemoSpec/MD5 | 50 +-- ChemoSpec-4.2.8/ChemoSpec/NAMESPACE | 11 ChemoSpec-4.2.8/ChemoSpec/NEWS | 24 + ChemoSpec-4.2.8/ChemoSpec/R/check4Gaps.R | 2 ChemoSpec-4.2.8/ChemoSpec/R/files2SpectraObject.R | 189 +------------ ChemoSpec-4.2.8/ChemoSpec/R/hypTestScores.R | 2 ChemoSpec-4.2.8/ChemoSpec/R/sumSpectra.R | 1 ChemoSpec-4.2.8/ChemoSpec/inst/doc/ChemoSpec.R | 35 +- ChemoSpec-4.2.8/ChemoSpec/inst/doc/ChemoSpec.Rnw | 42 +- ChemoSpec-4.2.8/ChemoSpec/inst/doc/ChemoSpec.pdf |binary ChemoSpec-4.2.8/ChemoSpec/man/ChemoSpec-package.Rd | 3 ChemoSpec-4.2.8/ChemoSpec/man/MUD.Rd | 4 ChemoSpec-4.2.8/ChemoSpec/man/files2SpectraObject.Rd | 4 ChemoSpec-4.2.8/ChemoSpec/man/plotSpectraJS.Rd | 2 ChemoSpec-4.2.8/ChemoSpec/vignettes/ChemoSpec.Rnw | 42 +- ChemoSpec-4.2.8/ChemoSpec/vignettes/chemometrics.bib | 14 35 files changed, 140 insertions(+), 295 deletions(-)
Title: Bootstrapped Differences of Time Series
Description: Analyze differences among time series curves with Oleson et al's modified p-value technique.
Author: Michael Seedorff, Jacob Oleson, Grant Brown, Joseph Cavanaugh, and Bob McMurray
Maintainer: Michael Seedorff <michael-seedorff@uiowa.edu>
Diff between bdots versions 0.1.2 dated 2015-09-25 and 0.1.4 dated 2016-01-26
DESCRIPTION | 8 +- MD5 | 30 ++++--- NAMESPACE | 7 + R/doubleGaussFit.r | 22 +++++ R/doubleGaussRefit.r | 32 +++++++- R/logisticFit.r | 19 ++++ R/logisticRefit.r | 29 +++++++ R/subsDelete.r |only R/subsPlot.r | 203 ++++++++++++++++++++++----------------------------- build/vignette.rds |binary inst/doc/bdots.R | 23 ++++- inst/doc/bdots.Rnw | 13 +++ inst/doc/bdots.pdf |binary man/refit.Rd | 15 ++- man/subsDelete.Rd |only man/subsPlot.Rd | 3 vignettes/bdots.Rnw | 13 +++ 17 files changed, 264 insertions(+), 153 deletions(-)
Title: Kernel-Based Machine Learning Lab
Description: Kernel-based machine learning methods for classification,
regression, clustering, novelty detection, quantile regression
and dimensionality reduction. Among other methods 'kernlab'
includes Support Vector Machines, Spectral Clustering, Kernel
PCA, Gaussian Processes and a QP solver.
Author: Alexandros Karatzoglou [aut, cre],
Alex Smola [aut],
Kurt Hornik [aut]
Maintainer: Alexandros Karatzoglou <alexis@ci.tuwien.ac.at>
Diff between kernlab versions 0.9-22 dated 2015-08-05 and 0.9-23 dated 2016-01-26
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- src/stringkernel.cpp | 4 ++-- src/svm.cpp | 5 ++--- 4 files changed, 11 insertions(+), 12 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-09-15 0.73
2013-06-18 0.72
2013-03-30 0.71
2012-12-20 0.60
2012-02-15 0.53
2012-02-13 0.52
2011-11-21 0.51
2011-04-28 0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-09-21 2.1
2013-07-11 2.0
2012-08-21 1.2
2012-05-17 1.1
2012-04-03 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-08-11 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-07-22 1.5
2011-11-02 1.4
2011-10-12 1.3
2011-09-21 1.2
2011-09-11 1.1
2011-08-30 1.0
Title: Spectroscopy Related Utilities
Description: Utility functions for spectroscopy. 1. Functions to simulate
spectra for use in teaching or testing. 2. Functions to process files created by
'LoggerPro' and 'SpectraSuite' software.
Author: Bryan A. Hanson DePauw University, Greencastle Indiana USA
Maintainer: Bryan A. Hanson <hanson@depauw.edu>
Diff between SpecHelpers versions 0.1.19 dated 2015-07-16 and 0.2.2 dated 2016-01-26
DESCRIPTION | 16 +++++++++------ MD5 | 46 ++++++++++++++++++++++++++++----------------- NAMESPACE | 26 ++++++++++++++++++++++++- NEWS | 6 +++++ R/CIExyz.R |only R/emSpectrum.R |only R/getGamutValues.R |only R/plot2DNMRspec.R | 2 - R/plotCIEchrom.R |only R/plotNMRspec.R | 33 +++++++++++++++++++------------- R/prepCIEgradient.R |only R/sysdata.rda |only data |only man/CIExyz.Rd |only man/SpecHelpers-package.Rd | 2 - man/avgLambda.Rd | 2 - man/emSpectrum.Rd |only man/gatherCsv.Rd | 2 - man/gatherSpecFiles.Rd | 2 - man/gaussCurve.Rd | 4 ++- man/getGamutValues.Rd |only man/jSeq.Rd | 4 ++- man/lorentzCurve.Rd | 4 ++- man/makeSpec.Rd | 4 ++- man/plot2DNMRspec.Rd | 5 ++-- man/plotCIEchrom.Rd |only man/plotNMRspec.Rd | 33 +++++++++++++++++++++++--------- man/prepCIEgradient.Rd |only man/qMS.Rd | 4 ++- man/txt2csv.Rd | 2 - 30 files changed, 138 insertions(+), 59 deletions(-)
Title: Wrapper Functions for GUESS
Description: Wrapper functions for GUESS, a GPU-enabled sparse Bayesian variable
selection method for linear regression based analysis of possibly
multivariate/correlated outcomes.
Author: Gianluca Campanella [cre],
Benoit Liquet [aut],
Marc Chadeau-Hyam [aut],
Leonardo Bottolo [ctb],
Sylvia Richardson [ctb]
Maintainer: Gianluca Campanella <gianluca@campanella.org>
Diff between R2GUESS versions 1.6 dated 2014-11-12 and 1.7 dated 2016-01-26
DESCRIPTION | 12 ++++++------ MD5 | 9 +++++---- NAMESPACE | 2 +- R/plotcim.R | 2 +- R/plotcim.explore.R | 2 +- inst/CITATION |only 6 files changed, 14 insertions(+), 13 deletions(-)
Title: Interactive Exploration of Contour Data
Description: Interactive tools to explore topographic-like data
sets. Such data sets take the form of a matrix in which the rows and
columns provide location/frequency information, and the matrix elements
contain altitude/response information. Such data is found in cartography,
2D spectroscopy and chemometrics. The functions in this package create
interactive web pages showing the contoured data, possibly with
slices from the original matrix parallel to each dimension. The interactive
behavior is created using the D3.js 'JavaScript' library by Mike Bostock.
Author: Bryan Hanson [aut, cre],
Kristina Mulry [ctb]
Maintainer: Bryan Hanson <hanson@depauw.edu>
Diff between exCon versions 0.1.12 dated 2015-07-16 and 0.1.14 dated 2016-01-26
DESCRIPTION | 9 +++++---- MD5 | 12 ++++++------ NAMESPACE | 2 +- NEWS | 3 +++ R/exCon.R | 4 +++- man/exCon-package.Rd | 2 +- man/exCon.Rd | 11 +++++++---- 7 files changed, 26 insertions(+), 17 deletions(-)
Title: Mining Frequent Sequences
Description: Add-on for arules to handle and mine frequent sequences.
Provides interfaces to the C++ implementation of cSPADE by
Mohammed J. Zaki.
Author: Christian Buchta and Michael Hahsler, with contributions from
Daniel Diaz
Maintainer: Christian Buchta <christian.buchta@wu.ac.at>
Diff between arulesSequences versions 0.2-12 dated 2015-12-04 and 0.2-13 dated 2016-01-26
CHANGELOG | 15 ++ DESCRIPTION | 8 - MD5 | 38 +++---- NAMESPACE | 4 R/01matrix.R | 10 + R/02sequences.R | 24 +--- R/03rules.R | 39 +++++++ R/05read_write.R | 7 - R/30similarity.R | 34 +++++- man/SPcontrol-class.Rd | 2 man/sequencerules-class.Rd | 9 + src/ptree.c | 230 ++++++++++++++++++++++++++++++++++++++------- src/similarity.c | 28 +++++ tests/idlists.Rout.save | 4 tests/ptree.R | 7 + tests/ptree.Rout.save | 29 +++-- tests/similarity.R | 9 + tests/similarity.Rout.save | 28 ++++- tests/zaki.R | 11 +- tests/zaki.Rout.save | 23 ++-- 20 files changed, 445 insertions(+), 114 deletions(-)
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Title: Data Visualization for Statistics in Social Science
Description: Collection of plotting and table output functions for data
visualization. Results of various statistical analyses (that are commonly used
in social sciences) can be visualized using this package, including simple and
cross tabulated frequencies, histograms, box plots, (generalized) linear models,
mixed effects models, PCA and correlation matrices, cluster analyses, scatter
plots, Likert scales, effects plots of regression models (including interaction
terms) and much more.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjPlot versions 1.8.4 dated 2015-10-12 and 1.9 dated 2016-01-26
DESCRIPTION | 21 MD5 | 166 - NAMESPACE | 300 +- NEWS | 1332 ++++++------- R/helpfunctions.R | 398 +-- R/sjPlotAncovaLSMeans.R | 38 R/sjPlotAnova.R | 875 ++++---- R/sjPlotClusterAnalysis.R | 1780 ++++++++--------- R/sjPlotCorr.R | 9 R/sjPlotFrequencies.R | 1636 +++++++--------- R/sjPlotGLME.R | 4535 +++++++++++++++++++++++---------------------- R/sjPlotGroupFrequencies.R | 2036 ++++++++------------ R/sjPlotGroupPropTable.R | 39 R/sjPlotInteractions.R | 2983 ++++++++++++++--------------- R/sjPlotLikert.R | 3 R/sjPlotLinreg.R | 249 +- R/sjPlotLinregMultiple.R | 908 ++++----- R/sjPlotOdds.R | 73 R/sjPlotOddsMultiple.R | 2 R/sjPlotPCA.R | 11 R/sjPlotPearsonsChi2Test.R | 3 R/sjPlotPolynomials.R | 2 R/sjPlotPropTable.R | 1131 ++++------- R/sjPlotScatter.R | 703 +++--- R/sjPlotSetTheme.R | 1896 +++++++++--------- R/sjPlotStackFrequencies.R | 963 ++++----- R/sjTabCorr.R | 1021 +++++----- R/sjTabDataFrame.R | 7 R/sjTabFrequencies.R | 136 - R/sjTabItemAnalysis.R | 809 ++++---- R/sjTabLinReg.R | 15 R/sjTabOdds.R | 2 R/sjTabPCA.R | 1189 +++++------ R/sjTabPropTable.R | 388 --- R/sjTabSPSS.R | 10 R/sjTabStackFrq.R | 1039 +++++----- README.md | 124 - man/adjust_plot_range.Rd | 3 man/dist_chisq.Rd | 13 man/dist_f.Rd | 9 man/dist_norm.Rd | 9 man/dist_t.Rd | 9 man/save_plot.Rd | 2 man/sjPlot-package.Rd | 102 - man/sjc.cluster.Rd | 37 man/sjc.dend.Rd | 21 man/sjc.elbow.Rd | 15 man/sjc.grpdisc.Rd | 7 man/sjc.kgap.Rd | 17 man/sjc.qclus.Rd | 67 man/sjp.aov1.Rd | 52 man/sjp.chi2.Rd | 9 man/sjp.corr.Rd | 30 man/sjp.frq.Rd | 214 -- man/sjp.glm.Rd | 47 man/sjp.glmer.Rd | 48 man/sjp.glmm.Rd | 43 man/sjp.gpt.Rd | 23 man/sjp.grpfrq.Rd | 193 - man/sjp.int.Rd | 128 - man/sjp.likert.Rd | 65 man/sjp.lm.Rd | 76 man/sjp.lmer.Rd | 74 man/sjp.lmm.Rd | 35 man/sjp.pca.Rd | 72 man/sjp.poly.Rd | 19 man/sjp.scatter.Rd | 25 man/sjp.setTheme.Rd | 42 man/sjp.stackfrq.Rd | 79 man/sjp.xtab.Rd | 116 - man/sjt.corr.Rd | 57 man/sjt.df.Rd | 49 man/sjt.frq.Rd | 57 man/sjt.glm.Rd | 121 - man/sjt.glmer.Rd | 57 man/sjt.grpmean.Rd | 15 man/sjt.itemanalysis.Rd | 37 man/sjt.lm.Rd | 173 - man/sjt.lmer.Rd | 57 man/sjt.mwu.Rd | 11 man/sjt.pca.Rd | 73 man/sjt.stackfrq.Rd | 65 man/sjt.xtab.Rd | 86 man/view_df.Rd | 17 84 files changed, 14486 insertions(+), 14922 deletions(-)
Title: Sabermetrics Functions for Baseball Analytics
Description: A collection of baseball analytics functions for sabermetrics
purposes. Among these functions include popular metrics such as FIP, wOBA, and
runs created and other advanced metrics.
Author: Peter Xenopoulos, Fernando Crema <www.peterxeno.com>
Maintainer: Peter Xenopoulos <peter.xenopoulos@pomona.edu>
Diff between Sabermetrics versions 1.0 dated 2015-02-06 and 2.0 dated 2016-01-26
Sabermetrics-1.0/Sabermetrics/R/sabermetrics.R |only Sabermetrics-1.0/Sabermetrics/inst |only Sabermetrics-1.0/Sabermetrics/man/eqa.Rd |only Sabermetrics-1.0/Sabermetrics/man/rcBasic.Rd |only Sabermetrics-1.0/Sabermetrics/man/rcBasicSB.Rd |only Sabermetrics-1.0/Sabermetrics/man/rcPX.Rd |only Sabermetrics-1.0/Sabermetrics/man/rcTech.Rd |only Sabermetrics-1.0/Sabermetrics/man/secA.Rd |only Sabermetrics-1.0/Sabermetrics/man/wOBA.Rd |only Sabermetrics-1.0/Sabermetrics/vignettes |only Sabermetrics-2.0/Sabermetrics/DESCRIPTION | 17 ++- Sabermetrics-2.0/Sabermetrics/MD5 | 51 ++++++---- Sabermetrics-2.0/Sabermetrics/R/Sabermetrics.R |only Sabermetrics-2.0/Sabermetrics/man/babip.Rd |only Sabermetrics-2.0/Sabermetrics/man/dice.Rd | 61 ++++++------- Sabermetrics-2.0/Sabermetrics/man/era.Rd |only Sabermetrics-2.0/Sabermetrics/man/eraminus.Rd |only Sabermetrics-2.0/Sabermetrics/man/fip.Rd | 65 +++++++------- Sabermetrics-2.0/Sabermetrics/man/fipminus.Rd |only Sabermetrics-2.0/Sabermetrics/man/fp.Rd |only Sabermetrics-2.0/Sabermetrics/man/handedparkfactors.Rd |only Sabermetrics-2.0/Sabermetrics/man/iso.Rd | 42 ++++----- Sabermetrics-2.0/Sabermetrics/man/lgwSB.Rd |only Sabermetrics-2.0/Sabermetrics/man/linearWeights.Rd |only Sabermetrics-2.0/Sabermetrics/man/log5.Rd | 45 +++++++-- Sabermetrics-2.0/Sabermetrics/man/obp.Rd | 61 ++++++------- Sabermetrics-2.0/Sabermetrics/man/ops.Rd | 47 ++++------ Sabermetrics-2.0/Sabermetrics/man/opsplus.Rd |only Sabermetrics-2.0/Sabermetrics/man/parkfactors.Rd |only Sabermetrics-2.0/Sabermetrics/man/pyth.Rd | 40 ++++++-- Sabermetrics-2.0/Sabermetrics/man/raweqa.Rd |only Sabermetrics-2.0/Sabermetrics/man/sabermetrics-package.Rd | 14 +-- Sabermetrics-2.0/Sabermetrics/man/secavg.Rd |only Sabermetrics-2.0/Sabermetrics/man/slg.Rd | 52 ++++------- Sabermetrics-2.0/Sabermetrics/man/whip.Rd |only Sabermetrics-2.0/Sabermetrics/man/woba.Rd |only Sabermetrics-2.0/Sabermetrics/man/wraa.Rd |only Sabermetrics-2.0/Sabermetrics/man/wrc.Rd |only Sabermetrics-2.0/Sabermetrics/man/wrcplus.Rd |only Sabermetrics-2.0/Sabermetrics/man/wsb.Rd |only Sabermetrics-2.0/Sabermetrics/man/xfip.Rd |only Sabermetrics-2.0/Sabermetrics/man/xfipminus.Rd |only 42 files changed, 279 insertions(+), 216 deletions(-)
Title: A Most Informative Histogram-Like Model
Description: Using the MDL principle, it is possible to estimate
parameters for a histogram-like model. The package contains
the implementation of such an estimation method.
Author: Jouke Witteveen
Maintainer: Jouke Witteveen <j.witteveen@gmail.com>
Diff between histmdl versions 0.4-1 dated 2015-03-16 and 0.5-1 dated 2016-01-26
DESCRIPTION | 9 +++--- MD5 | 10 +++---- NAMESPACE | 4 ++- R/histmdl.R | 65 ++++++++++++++++++++++++------------------------- man/histmdl-package.Rd | 4 +-- man/histmdl.Rd | 43 +++++++------------------------- 6 files changed, 57 insertions(+), 78 deletions(-)
Title: Cox Model for Case-Cohort Data with Stratified
Subcohort-Selection
Description: Contains a function, also called cchs, that calculates Estimator III of Borgan et al (2000), Exposure-stratified Case-cohort Designs. This estimator is for fitting a Cox proportional hazards model to data from a case-cohort study where the subcohort was selected by stratified simple random sampling.
Author: E. Jones
Maintainer: E. Jones <r-cchs@outlook.com>
Diff between cchs versions 0.1.0 dated 2015-01-29 and 0.2.0 dated 2016-01-26
cchs-0.1.0/cchs/R/classRelatedFunctions.R |only cchs-0.2.0/cchs/DESCRIPTION | 8 cchs-0.2.0/cchs/MD5 | 22 +- cchs-0.2.0/cchs/NAMESPACE | 1 cchs-0.2.0/cchs/R/argProcessingSubroutines.R | 43 ++-- cchs-0.2.0/cchs/R/cchs-class.R |only cchs-0.2.0/cchs/R/cchs.R | 214 ++++++++++++++---------- cchs-0.2.0/cchs/R/rowManipulationSubroutines.R | 34 ++- cchs-0.2.0/cchs/R/samplingFractionSubroutines.R | 86 +++++---- cchs-0.2.0/cchs/R/tiedEventTimeSubroutines.R | 17 + cchs-0.2.0/cchs/R/utils.R | 14 + cchs-0.2.0/cchs/man/cchs.Rd | 76 ++++---- cchs-0.2.0/cchs/man/cchsData.Rd | 11 - 13 files changed, 302 insertions(+), 224 deletions(-)
Title: Java Executable .jar Files for 'RKEEL'
Description: KEEL is a popular Java software for a large number of different knowledge data discovery tasks. Furthermore, 'RKEEL' is a package with a R code layer between R and KEEL, for using KEEL in R code. This package downloads and install the .jar files necessary for 'RKEEL' algorithms execution. For more information about KEEL, see <http://www.keel.es/>.
Author: Jose Moyano [aut, cre], Luciano Sanchez Ramos [aut]
Maintainer: Jose Moyano <i02momuj@uco.es>
Diff between RKEELjars versions 1.0.4 dated 2016-01-24 and 1.0.6 dated 2016-01-26
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/getJarList.R | 2 ++ R/zzz.R | 9 ++------- 4 files changed, 10 insertions(+), 13 deletions(-)
Title: Graphical User Interface for Data Mining in R
Description: The R Analytic Tool To Learn Easily (Rattle) provides a
Gnome (RGtk2) based interface to R functionality for data mining.
The aim is to provide a simple and intuitive interface
that allows a user to quickly load data from a CSV file
(or via ODBC), transform and explore the data,
build and evaluate models, and export models as PMML (predictive
modelling markup language) or as scores. All of this with knowing little
about R. All R commands are logged and commented through the log tab. Thus they
are available to the user as a script file or as an aide for the user to
learn R or to copy-and-paste directly into R itself.
Rattle also exports a number of utility
functions and the graphical user interface, invoked as rattle(), does
not need to be run to deploy these.
Author: Graham Williams [aut, cph, cre],
Mark Vere Culp [cph],
Ed Cox [ctb],
Anthony Nolan [ctb],
Denis White [cph],
Daniele Medri [ctb],
Akbar Waljee [ctb] (OOB AUC for Random Forest),
Brian Ripley [cph] (Author of original print.summary.nnet),
Jose Magana [ctb] (Contributed the ggpairs plots.)
Maintainer: Graham Williams <Graham.Williams@togaware.com>
Diff between rattle versions 4.0.5 dated 2015-11-24 and 4.1.0 dated 2016-01-26
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- R/evaluate.R | 8 +++++--- R/rattle.R | 4 ++-- R/transform.R | 7 ++++--- R/zzz.R | 5 +++-- build/vignette.rds |binary data/locationsAUS.RData |binary data/weather.RData |binary data/weatherAUS.RData |binary inst/NEWS | 21 +++++++++++++++++++++ inst/doc/rattle.pdf |binary 12 files changed, 50 insertions(+), 25 deletions(-)
Title: Eye-Tracking Data Analysis
Description: A set of tools that address tasks along the pipeline from raw
data to analysis and visualization for eye-tracking data. Offers several
popular types of analyses, including linear and growth curve time analyses,
onset-contingent reaction time analyses, as well as several non-parametric
bootstrapping approaches.
Author: Jacob Dink [aut, cre],
Brock Ferguson [aut]
Maintainer: Jacob Dink <jacobwdink@gmail.com>
Diff between eyetrackingR versions 0.1.3 dated 2016-01-09 and 0.1.4 dated 2016-01-26
DESCRIPTION | 12 +-- MD5 | 42 +++++------ NEWS.md | 3 R/data_prep.R | 18 +++++ R/onset_contingent_data.R | 82 +++++++++++++++++------ inst/doc/divergence_vignette.Rmd | 4 - inst/doc/divergence_vignette.html | 38 ++++------ inst/doc/growth_curve_analysis_vignette.Rmd | 2 inst/doc/growth_curve_analysis_vignette.html | 19 ++--- inst/doc/onset_contingent_analysis_vignette.R | 2 inst/doc/onset_contingent_analysis_vignette.Rmd | 4 - inst/doc/onset_contingent_analysis_vignette.html | 39 +++++----- inst/doc/preparing_your_data_vignette.Rmd | 2 inst/doc/preparing_your_data_vignette.html | 4 - inst/doc/window_analysis_vignette.Rmd | 2 inst/doc/window_analysis_vignette.html | 20 ++--- man/make_onset_data.Rd | 4 - vignettes/divergence_vignette.Rmd | 4 - vignettes/growth_curve_analysis_vignette.Rmd | 2 vignettes/onset_contingent_analysis_vignette.Rmd | 4 - vignettes/preparing_your_data_vignette.Rmd | 2 vignettes/window_analysis_vignette.Rmd | 2 22 files changed, 182 insertions(+), 129 deletions(-)
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