Title: Perceptual Analysis, Visualization and Organization of Spectral
Color Data in R
Description: A cohesive framework for parsing, analyzing and organizing color
from spectral data.
Author: Rafael Maia [aut, cre],
Chad Eliason [aut],
Pierre-Paul Bitton [aut]
Maintainer: Rafael Maia <rm72@zips.uakron.edu>
Diff between pavo versions 0.5-2 dated 2015-06-10 and 0.5-4 dated 2016-01-27
DESCRIPTION | 16 ++++++---- MD5 | 70 ++++++++++++++++++++++++------------------------ NAMESPACE | 31 ++++++++++++++++++++- NEWS | 10 ++++++ R/coldist.R | 6 ++-- R/pavo-package.R | 5 +++ man/aggplot.Rd | 14 ++++----- man/aggspec.Rd | 10 +++--- man/as.rspec.Rd | 3 +- man/bgandilum.Rd | 2 - man/coldist.Rd | 29 +++++++++---------- man/explorespec.Rd | 8 ++--- man/getspec.Rd | 12 ++++---- man/irrad2flux.Rd | 4 +- man/merge.rspec.Rd | 5 ++- man/pavo-package.Rd | 4 +- man/peakshape.Rd | 6 ++-- man/plot.rspec.Rd | 12 ++++---- man/plotsmooth.Rd | 4 +- man/procspec.Rd | 14 ++++----- man/projplot.Rd | 4 +- man/segclass.Rd | 8 ++--- man/sensmodel.Rd | 8 ++--- man/sicalis.Rd | 4 +- man/spec2rgb.Rd | 4 +- man/subset.rspec.Rd | 5 ++- man/summary.rspec.Rd | 48 ++++++++++++++++---------------- man/summary.tcs.Rd | 12 ++++---- man/summary.vismodel.Rd | 2 - man/tcs.Rd | 2 - man/tcsplot.Rd | 19 ++++++------- man/teal.Rd | 6 ++-- man/ttvertex.Rd | 2 - man/vismodel.Rd | 28 +++++++++---------- man/vissyst.Rd | 2 - man/voloverlap.Rd | 24 ++++++++-------- 36 files changed, 246 insertions(+), 197 deletions(-)
Title: '--omics' Data Analysis Toolbox
Description: A collection of functions to analyse '--omics' datasets such as DNA
methylation and gene expression profiles.
Author: Gianluca Campanella [aut, cre]
Maintainer: Gianluca Campanella <gianluca@campanella.org>
Diff between omics versions 0.1-2 dated 2016-01-25 and 0.1-3 dated 2016-01-27
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/mlm.R | 6 ------ R/mlmer.R | 15 ++++----------- inst/NEWS.Rd | 6 ++++++ 5 files changed, 18 insertions(+), 25 deletions(-)
Title: Tools for Working with URLs and HTTP
Description: Useful tools for working with HTTP organised by HTTP verbs
(GET(), POST(), etc). Configuration functions make it easy to control
additional request components (authenticate(), add_headers() and so on).
Author: Hadley Wickham [aut, cre],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between httr versions 1.0.0 dated 2015-06-25 and 1.1.0 dated 2016-01-27
httr-1.0.0/httr/R/hmac.r |only httr-1.0.0/httr/inst/cacert.pem |only httr-1.0.0/httr/man/url_ok.Rd |only httr-1.0.0/httr/man/url_success.Rd |only httr-1.1.0/httr/DESCRIPTION | 12 httr-1.1.0/httr/MD5 | 229 +++++++++---------- httr-1.1.0/httr/NAMESPACE | 9 httr-1.1.0/httr/NEWS.md |only httr-1.1.0/httr/R/body.R | 2 httr-1.1.0/httr/R/config.r | 4 httr-1.1.0/httr/R/content-parse.r | 72 +++-- httr-1.1.0/httr/R/content.r | 2 httr-1.1.0/httr/R/handle-url.r | 2 httr-1.1.0/httr/R/handle.r | 19 + httr-1.1.0/httr/R/http-browse.r | 2 httr-1.1.0/httr/R/http-patch.r | 1 httr-1.1.0/httr/R/http-post.r | 1 httr-1.1.0/httr/R/http-put.r | 1 httr-1.1.0/httr/R/httr.r | 1 httr-1.1.0/httr/R/oauth-cache.R | 10 httr-1.1.0/httr/R/oauth-endpoint.r | 49 +++- httr-1.1.0/httr/R/oauth-error.r |only httr-1.1.0/httr/R/oauth-init.R | 56 +++- httr-1.1.0/httr/R/oauth-refresh.R | 20 + httr-1.1.0/httr/R/oauth-server-side.R | 52 +--- httr-1.1.0/httr/R/oauth-signature.r | 19 + httr-1.1.0/httr/R/oauth-token.r | 59 +++- httr-1.1.0/httr/R/progress.R | 10 httr-1.1.0/httr/R/request.R | 7 httr-1.1.0/httr/R/response-status.r | 166 ++++++++----- httr-1.1.0/httr/R/sha1.r |only httr-1.1.0/httr/R/str.R |only httr-1.1.0/httr/R/url-query.r | 7 httr-1.1.0/httr/R/url.r | 15 - httr-1.1.0/httr/R/utils.r | 5 httr-1.1.0/httr/R/zzz.R | 3 httr-1.1.0/httr/README.md | 16 - httr-1.1.0/httr/build/vignette.rds |binary httr-1.1.0/httr/demo/00Index | 2 httr-1.1.0/httr/demo/oauth1-withings.r | 2 httr-1.1.0/httr/demo/oauth1-yahoo.r | 3 httr-1.1.0/httr/demo/oauth2-azure.r |only httr-1.1.0/httr/demo/service-account.R |only httr-1.1.0/httr/inst/doc/api-packages.R | 4 httr-1.1.0/httr/inst/doc/api-packages.Rmd | 27 +- httr-1.1.0/httr/inst/doc/api-packages.html | 38 ++- httr-1.1.0/httr/inst/doc/quickstart.html | 64 ++--- httr-1.1.0/httr/man/BROWSE.Rd | 20 - httr-1.1.0/httr/man/DELETE.Rd | 20 - httr-1.1.0/httr/man/GET.Rd | 21 - httr-1.1.0/httr/man/HEAD.Rd | 21 - httr-1.1.0/httr/man/PATCH.Rd | 20 + httr-1.1.0/httr/man/POST.Rd | 20 + httr-1.1.0/httr/man/PUT.Rd | 20 + httr-1.1.0/httr/man/Token-class.Rd | 2 httr-1.1.0/httr/man/VERB.Rd | 21 - httr-1.1.0/httr/man/add_headers.Rd | 10 httr-1.1.0/httr/man/authenticate.Rd | 10 httr-1.1.0/httr/man/cache_info.Rd | 2 httr-1.1.0/httr/man/config.Rd | 17 - httr-1.1.0/httr/man/content.Rd | 8 httr-1.1.0/httr/man/content_type.Rd | 2 httr-1.1.0/httr/man/cookies.Rd | 2 httr-1.1.0/httr/man/guess_media.Rd | 2 httr-1.1.0/httr/man/handle.Rd | 19 + httr-1.1.0/httr/man/handle_pool.Rd | 2 httr-1.1.0/httr/man/has_content.Rd | 2 httr-1.1.0/httr/man/headers.Rd | 2 httr-1.1.0/httr/man/hmac_sha1.Rd | 4 httr-1.1.0/httr/man/http_condition.Rd | 9 httr-1.1.0/httr/man/http_error.Rd | 54 +--- httr-1.1.0/httr/man/http_status.Rd | 8 httr-1.1.0/httr/man/httr.Rd | 2 httr-1.1.0/httr/man/httr_dr.Rd | 2 httr-1.1.0/httr/man/httr_options.Rd | 2 httr-1.1.0/httr/man/init_oauth1.0.Rd | 7 httr-1.1.0/httr/man/init_oauth2.0.Rd | 16 + httr-1.1.0/httr/man/insensitive.Rd | 2 httr-1.1.0/httr/man/jwt_signature.Rd | 4 httr-1.1.0/httr/man/modify_url.Rd | 4 httr-1.1.0/httr/man/oauth1.0_token.Rd | 11 httr-1.1.0/httr/man/oauth2.0_token.Rd | 27 +- httr-1.1.0/httr/man/oauth_app.Rd | 8 httr-1.1.0/httr/man/oauth_callback.Rd | 2 httr-1.1.0/httr/man/oauth_endpoint.Rd | 6 httr-1.1.0/httr/man/oauth_endpoints.Rd | 4 httr-1.1.0/httr/man/oauth_exchanger.Rd | 2 httr-1.1.0/httr/man/oauth_listener.Rd | 2 httr-1.1.0/httr/man/oauth_service_token.Rd | 6 httr-1.1.0/httr/man/oauth_signature.Rd | 8 httr-1.1.0/httr/man/parse_http_date.Rd | 2 httr-1.1.0/httr/man/parse_media.Rd | 2 httr-1.1.0/httr/man/parse_url.Rd | 2 httr-1.1.0/httr/man/progress.Rd | 2 httr-1.1.0/httr/man/response.Rd | 8 httr-1.1.0/httr/man/revoke_all.Rd | 2 httr-1.1.0/httr/man/safe_callback.Rd | 2 httr-1.1.0/httr/man/set_config.Rd | 6 httr-1.1.0/httr/man/set_cookies.Rd | 10 httr-1.1.0/httr/man/sha1_hash.Rd |only httr-1.1.0/httr/man/sign_oauth.Rd | 2 httr-1.1.0/httr/man/status_code.Rd | 2 httr-1.1.0/httr/man/stop_for_status.Rd |only httr-1.1.0/httr/man/timeout.Rd | 10 httr-1.1.0/httr/man/upload_file.Rd | 2 httr-1.1.0/httr/man/use_proxy.Rd | 14 - httr-1.1.0/httr/man/user_agent.Rd | 10 httr-1.1.0/httr/man/verbose.Rd | 10 httr-1.1.0/httr/man/with_config.Rd | 6 httr-1.1.0/httr/man/write_disk.Rd | 2 httr-1.1.0/httr/man/write_function.Rd | 4 httr-1.1.0/httr/man/write_stream.Rd | 2 httr-1.1.0/httr/tests/testthat/test-body.r | 4 httr-1.1.0/httr/tests/testthat/test-content.R | 18 + httr-1.1.0/httr/tests/testthat/test-encoding.R |only httr-1.1.0/httr/tests/testthat/test-header.r | 4 httr-1.1.0/httr/tests/testthat/test-http-condition.R |only httr-1.1.0/httr/tests/testthat/test-http-error.R |only httr-1.1.0/httr/tests/testthat/test-oauth.R | 4 httr-1.1.0/httr/tests/testthat/test-response.r | 37 +-- httr-1.1.0/httr/tests/testthat/test-ssl.R | 12 httr-1.1.0/httr/tests/testthat/test-url.r | 21 + httr-1.1.0/httr/vignettes/api-packages.Rmd | 27 +- 123 files changed, 990 insertions(+), 661 deletions(-)
Title: Goodness-of-Fit Tests for Copulae
Description: Several GoF tests for Copulae are provided. A new hybrid test is implemented which supports all of the individual tests. Estimation methods for the margins are provided. All the tests support parameter estimation and predefined values. The parameters are estimated by pseudo maximum likelihood but if it fails the estimation switches automatically to inversion of Kendall's tau.
Author: Ostap Okhrin <ostap.okhrin@tu-dresden.de>,
Simon Trimborn <simon.trimborn@wiwi.hu-berlin.de>,
Shulin Zhang <slzhang@swufe.edu.cn>,
Qian M. Zhou <qmzhou@sfu.ca>
Maintainer: Simon Trimborn <simon.trimborn@wiwi.hu-berlin.de>
Diff between gofCopula versions 0.1-1 dated 2015-11-04 and 0.1-2 dated 2016-01-27
DESCRIPTION | 13 ++++++++----- MD5 | 16 ++++++++-------- R/tests_copula_helper.R | 9 ++++++--- man/tests_copula1.Rd | 2 +- man/tests_copula2.Rd | 2 +- man/tests_copula3.Rd | 2 +- man/tests_copula4.Rd | 2 +- man/tests_copula6.Rd | 2 +- man/tests_copula7.Rd | 2 +- 9 files changed, 28 insertions(+), 22 deletions(-)
Title: Bayesian Latent Variable Analysis
Description: Fit a variety of Bayesian latent variable models, including confirmatory
factor analysis, structural equation models, and latent growth curve models.
Author: Edgar Merkle [aut, cre],
Yves Rosseel [aut]
Maintainer: Edgar Merkle <merklee@missouri.edu>
Diff between blavaan versions 0.1-1 dated 2015-11-12 and 0.1-2 dated 2016-01-27
DESCRIPTION | 6 ++-- MD5 | 20 ++++++++------ NAMESPACE | 4 +- NEWS | 14 +++++++++- R/blav_object_methods.R | 34 +++++++++++++++++++++++++ R/blav_utils.R | 56 +++++++++++++++++++++++++++++++++++++++++ R/blavaan.R | 13 ++++++++- R/jags2r.R |only R/lav_export_jags.R | 65 +++++++++++++++++++++++++++++++++++++----------- R/margloglik.R | 39 ++++------------------------ R/set_priors.R | 18 +++++++++++-- README |only 12 files changed, 202 insertions(+), 67 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-11-20 1.2
2013-09-20 1.1
2013-02-08 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-09-19 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-12-17 1.0-4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-04-15 0.4.6
2015-02-25 0.4.5
2015-01-06 0.4.4
2014-05-13 0.4.2
2013-10-06 0.4
2013-05-13 0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-03-15 0.10
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-08-17 2.4
2015-05-21 2.3
2014-03-25 2.2
2012-11-19 2.1.2
2012-11-18 2.1.1
2012-08-20 2.1
2012-03-28 2.0
2011-12-08 0.7
2011-11-24 0.6
2011-08-09 0.5
2010-05-04 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-08-31 0.7.2
2014-02-08 0.7.1
2014-01-15 0.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-08-27 0.8.7.0
2015-08-06 0.8.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-03-06 0.3.3
2013-12-30 0.3.2
2013-11-14 0.2.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-11-20 0.4.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-04-07 1.0-3
2012-12-14 1.0-2
2011-06-20 1.0-1
2010-12-16 1.0-0
2005-10-05 0.0-4
Title: Stable Isotope Bayesian Ellipses in R
Description: Fits bi-variate ellipses to stable isotope data using Bayesian
inference with the aim being to describe and compare their isotopic
niche.
Author: Andrew Jackson and Andrew Parnell
Maintainer: Andrew Jackson <a.jackson@tcd.ie>
Diff between SIBER versions 2.0 dated 2015-08-13 and 2.0.1 dated 2016-01-27
DESCRIPTION | 13 - MD5 | 101 +++++------ NAMESPACE | 2 NEWS.md |only R/addEllipse.R | 2 R/bayesianLayman.R | 2 R/communityMetricsML.R | 2 R/createSiberObject.R | 261 ++++++++++++++++------------- R/extractPosteriorMeans.R | 2 R/fitEllipse.R | 2 R/generateSiberCommunity.R | 2 R/generateSiberData.R | 2 R/generateSiberGroup.R | 2 R/groupMetricsML.R | 2 R/plotGroupEllipses.R | 2 R/plotSiberObject.R | 52 ++++- R/posteriorSEA.R | 4 R/siberConvexhull.R | 2 R/siberMVN.R | 2 R/sigmaSEA.R | 2 build/vignette.rds |binary inst/doc/Introduction-to-SIBER.R | 61 ++++++ inst/doc/Introduction-to-SIBER.Rmd | 68 +++++++ inst/doc/Introduction-to-SIBER.html | 110 +++++++++--- inst/extdata/test.group.names.csv |only man/SIBER.Rd | 6 man/addEllipse.Rd | 38 ++-- man/bayesianLayman.Rd | 16 - man/communityMetricsML.Rd | 9 - man/createSiberObject.Rd | 39 ++-- man/demo.siber.data.Rd | 14 - man/ellipseBackTransform.Rd | 18 +- man/extractPosteriorMeans.Rd | 16 - man/fitEllipse.Rd | 17 + man/genCircle.Rd | 8 man/generateSiberCommunity.Rd | 20 +- man/generateSiberData.Rd | 21 +- man/generateSiberGroup.Rd | 15 - man/groupMetricsML.Rd | 11 - man/hullArea.Rd | 6 man/laymanMetrics.Rd | 13 - man/plotCommunityHulls.Rd | 18 +- man/plotGroupEllipses.Rd | 8 man/plotGroupHulls.Rd | 22 +- man/plotSiberObject.Rd | 48 +++-- man/posteriorSEA.Rd | 10 - man/siberConvexhull.Rd | 7 man/siberDensityPlot.Rd | 42 ++-- man/siberEllipses.Rd | 12 - man/siberMVN.Rd | 20 +- man/sigmaSEA.Rd | 11 - vignettes/Introduction-to-SIBER.Rmd | 68 +++++++ vignettes/test-nonnumeric-group-labels.Rmd |only 53 files changed, 765 insertions(+), 466 deletions(-)
Title: Parametric Bootstrap and Kenward Roger Based Methods for Mixed
Model Comparison
Diff between pbkrtest versions 0.4-5 dated 2016-01-20 and 0.4-6 dated 2016-01-27
Description: Test in mixed effects models.
Attention is on mixed effects models as implemented in the
'lme4' package.
This package implements a parametric bootstrap test and a Kenward Roger
modification of F-tests for linear mixed effects models and a parametric bootstrap
test for generalized linear mixed models.
Author: Ulrich Halekoh
Maintainer: Søren Højsgaard
ChangeLog | 6 ++++++
DESCRIPTION | 14 +++++++-------
MD5 | 6 +++---
inst/doc/pbkrtest-introduction.pdf |binary
4 files changed, 16 insertions(+), 10 deletions(-)
Title: An R Interface to the Oniguruma Regular Expression Library
Description: Provides an alternative to R's built-in functionality for handling
regular expressions, based on the Oniguruma library. Offers first-class
compiled regex objects, partial matching and function-based substitutions,
amongst other features.
Author: Jon Clayden, based on Onigmo by K. Kosako and K. Takata
Maintainer: Jon Clayden <code@clayden.org>
Diff between ore versions 1.2.1 dated 2015-08-10 and 1.2.2 dated 2016-01-27
DESCRIPTION | 9 +++++---- LICENCE | 2 +- MD5 | 40 ++++++++++++++++++++-------------------- NAMESPACE | 2 +- NEWS | 11 +++++++++++ R/dict.R | 10 ++++++++-- R/es.R | 20 +++++++++++--------- README.md | 2 +- man/es.Rd | 2 +- man/matches.Rd | 2 +- man/ore.Rd | 2 +- man/ore.dict.Rd | 3 ++- man/ore.ismatch.Rd | 4 ++-- man/ore.lastmatch.Rd | 2 +- man/ore.search.Rd | 2 +- man/ore.split.Rd | 2 +- man/ore.subst.Rd | 2 +- src/match.c | 7 ++++++- tests/testthat/test-10-match.R | 1 + tests/testthat/test-20-dict.R | 1 + tests/testthat/test-25-es.R | 2 ++ 21 files changed, 79 insertions(+), 49 deletions(-)
Title: Laplace Deconvolution with Noisy Discrete Non-Equally Spaced
Observations on a Finite Time Interval
Description: Solves the problem of Laplace deconvolution with noisy discrete
non-equally spaced observations on a finite time interval based on expansions
of the convolution kernel, the unknown function and the observed signal over
Laguerre functions basis. It implements the methodology proposed in the paper
"Laplace deconvolution on the basis of time domain data and its application to
Dynamic Contrast Enhanced imaging" by F. Comte, C-A. Cuenod, M. Pensky and Y.
Rozenholc in ArXiv (http://arxiv.org/abs/1405.7107).
Author: Yves Rozenholc (University Paris Descartes), Marianna Pensky (University
of Central Florida)
Maintainer: Yves Rozenholc <yves.rozenholc@parisdescartes.fr>
Diff between LaplaceDeconv versions 1.0.3 dated 2015-10-31 and 1.0.4 dated 2016-01-27
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NAMESPACE | 7 ++++++- R/LagLaplaceDeconvolution.R | 11 ++++++----- man/BuildLaguerreSystem.Rd | 14 +++++++------- man/EX_DCEMRI_t0.rda-EX_DCEMRI_t1.rda.Rd | 2 +- man/LagLaplDeconv.Rd | 4 ++-- man/LaguerreLaplaceConvolution.Rd | 12 ++++++------ man/LaplaceConvolution.Rd | 10 +++++----- man/MakeLaguerreMatrix.Rd | 6 +++--- 10 files changed, 48 insertions(+), 42 deletions(-)
Title: Simulation-Based Maximum Likelihood Parameter Estimation
Description: An estimation method that can use computer simulations to
approximate maximum-likelihood estimates even when the likelihood function can not
be evaluated directly. It can be applied whenever it is feasible to conduct many
simulations, but works best when the data is approximately Poisson distributed.
It was originally designed for demographic inference in evolutionary
biology. It has optional support for conducting coalescent simulation using
the 'coala' package.
Author: Paul Staab [aut, cre],
Lisha Mathew [aut],
Dirk Metzler [aut, ths]
Maintainer: Paul Staab <develop@paulstaab.de>
Diff between jaatha versions 3.0.0 dated 2015-12-03 and 3.1.0 dated 2016-01-27
jaatha-3.0.0/jaatha/man/jaatha-package.Rd |only jaatha-3.1.0/jaatha/DESCRIPTION | 8 - jaatha-3.1.0/jaatha/MD5 | 68 +++++----- jaatha-3.1.0/jaatha/NAMESPACE | 5 jaatha-3.1.0/jaatha/NEWS.md | 25 +++ jaatha-3.1.0/jaatha/R/block.R | 29 ++-- jaatha-3.1.0/jaatha/R/boot_jaatha.R | 24 +-- jaatha-3.1.0/jaatha/R/coala_interface.R | 15 +- jaatha-3.1.0/jaatha/R/fit_glm.R | 18 ++ jaatha-3.1.0/jaatha/R/initialization.R | 49 ++++++- jaatha-3.1.0/jaatha/R/jaatha.R | 66 +++++++--- jaatha-3.1.0/jaatha/R/jaatha_log.R | 31 ++-- jaatha-3.1.0/jaatha/R/jaatha_model.R | 25 +++ jaatha-3.1.0/jaatha/R/likelihood.R | 26 +--- jaatha-3.1.0/jaatha/R/par_ranges.R | 12 - jaatha-3.1.0/jaatha/R/simulation_cache.R | 36 ++++- jaatha-3.1.0/jaatha/R/stat_cube.R | 11 - jaatha-3.1.0/jaatha/README.md | 19 +-- jaatha-3.1.0/jaatha/build/vignette.rds |binary jaatha-3.1.0/jaatha/inst/doc/jaatha-evolution.html | 2 jaatha-3.1.0/jaatha/inst/doc/jaatha-intro.html | 76 +++++++----- jaatha-3.1.0/jaatha/man/boot_jaatha.Rd | 9 - jaatha-3.1.0/jaatha/man/get_start_pos.Rd |only jaatha-3.1.0/jaatha/man/jaatha.Rd | 41 +++++- jaatha-3.1.0/jaatha/tests/testthat.R | 2 jaatha-3.1.0/jaatha/tests/testthat/test-block.R | 6 jaatha-3.1.0/jaatha/tests/testthat/test-coala-interface.R | 4 jaatha-3.1.0/jaatha/tests/testthat/test-fit-glm.R | 28 +++- jaatha-3.1.0/jaatha/tests/testthat/test-initialization.R | 31 +++- jaatha-3.1.0/jaatha/tests/testthat/test-jaatha-function.R | 13 +- jaatha-3.1.0/jaatha/tests/testthat/test-jaatha-log.R | 26 +--- jaatha-3.1.0/jaatha/tests/testthat/test-jaatha-model.R | 9 + jaatha-3.1.0/jaatha/tests/testthat/test-likelihood.R | 6 jaatha-3.1.0/jaatha/tests/testthat/test-sim-cache.R | 31 ++++ jaatha-3.1.0/jaatha/tests/testthat/test-stat-cubes.R | 14 +- jaatha-3.1.0/jaatha/tests/testthat/test-zzz-bootstrapping.R | 12 + 36 files changed, 507 insertions(+), 270 deletions(-)
Title: Download and Process GIMMS NDVI3g Data
Description: We provide a set of functions to retrieve information about GIMMS NDVI3g files currently available online; download and re-arrange the bi-monthly datasets according to creation time; import downloaded files from native binary (ENVI) format directly into R based on the widely applied 'raster' package; extract accompanying quality flags and perform quality control; calculate monthly value composites (e.g. maximum value composites, MVC) from the bi-monthly input data; and derive long-term monotonous trends from the Mann-Kendall trend test, optionally featuring pre-whitening to account for lag-1 autocorrelation.
Author: Florian Detsch [cre, aut]
Maintainer: Florian Detsch <admin@environmentalinformatics-marburg.de>
Diff between gimms versions 0.5.0 dated 2016-01-15 and 0.5.1 dated 2016-01-27
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/gimmsControls.R | 1 + R/rasterizeGimms.R | 4 ++-- README.md | 9 +++++++++ 5 files changed, 20 insertions(+), 10 deletions(-)
Title: Balanced and Spatially Balanced Sampling
Description: Select balanced and spatially balanced probability samples in multi-dimensional spaces with any prescribed inclusion probabilities. It contains fast (C++ via Rcpp) implementations of the included sampling methods. The local pivotal method and spatially correlated Poisson sampling (for spatially balanced sampling) are included. Also the cube method (for balanced sampling) and the local cube method (for doubly balanced sampling) are included.
Author: Anton Grafström, Jonathan Lisic
Maintainer: Anton Grafström <anton.grafstrom@gmail.com>
Diff between BalancedSampling versions 1.4 dated 2014-05-02 and 1.5.1 dated 2016-01-27
DESCRIPTION | 14 +- MD5 | 15 +- R/lpm2_kdtree.R |only man/BalancedSampling-package.Rd | 6 man/lpm2_kdtree.Rd |only src/RcppExports.cpp | 274 +++++++++++++++------------------------- src/cube.cpp | 270 ++++++--------------------------------- src/kdtree_lpm.c |only src/kdtree_lpm.h |only src/lpm1.cpp | 6 src/lpm3.c |only 11 files changed, 172 insertions(+), 413 deletions(-)
More information about BalancedSampling at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-03-28 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-12-07 1.1
2015-11-13 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-12-18 1.4
2015-11-10 1.3
2015-09-29 1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-08-31 0.7.8
2013-10-09 0.7.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-06-05 1.3-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-11-10 0.9-0
2014-03-07 0.8-1
2012-11-30 0.7-0
2012-09-05 0.6.3
2012-08-18 0.6.2
2012-07-05 0.6.1
2012-03-01 0.6.0
2012-01-04 0.5.0
2011-09-20 0.4.0
2011-07-06 0.3.0
2011-04-01 0.2.1
2011-03-04 0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-07-01 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-03-30 0.2.0
2013-10-19 0.1.2
2013-09-23 0.1.1
2013-09-21 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-08-23 2.0-8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-10-02 1.1
Title: Bootstrap Methods
Description: Supplies bootstrap alternatives to traditional hypothesis-test
and confidence-interval procedures such as one-sample and two-sample
inferences for means, medians, standard deviations, and proportions; simple
linear regression; and more. Suitable for general audiences, including
individual and group users, introductory statistics courses, and more advanced
statistics courses that desire an introduction to bootstrap methods.
Author: Neil A. Weiss
Maintainer: Neil A. Weiss <neil.a.weiss@asu.edu>
Diff between wBoot versions 1.0.1 dated 2015-09-22 and 1.0.3 dated 2016-01-27
DESCRIPTION | 16 ++++++++-------- MD5 | 12 ++++++------ man/boot.one.bca.Rd | 5 ++--- man/boot.one.per.Rd | 6 +++--- man/boot.two.bca.Rd | 5 ++--- man/boot.two.per.Rd | 5 ++--- man/wBoot-package.Rd | 13 +++++++++---- 7 files changed, 32 insertions(+), 30 deletions(-)
Title: Interface to Species Occurrence Data Sources
Description: A programmatic interface to many species occurrence data sources,
including 'GBIF', 'USGS's' 'BISON', 'iNaturalist', Berkeley 'Ecoinformatics'
Engine 'eBird', 'AntWeb', and 'iDigBio'. Includes functionality for
retrieving species occurrence data, and combining that data.
Author: Scott Chamberlain [aut, cre],
Karthik Ram [aut],
Ted Hart [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between spocc versions 0.4.4 dated 2016-01-22 and 0.4.5 dated 2016-01-27
DESCRIPTION | 6 MD5 | 44 ++-- NAMESPACE | 1 NEWS.md |only R/antweb_helpers.R | 5 R/ecoengine_helpers.R | 5 R/methods.r | 17 + R/occ_options.r | 14 - R/plugins.r | 2 R/spocc-package.R | 2 R/zzz.r | 6 inst/doc/spocc_vignette.Rmd | 331 ++++++++++++++++--------------- inst/doc/spocc_vignette.html | 330 ++++++++++++++++-------------- man/occ.Rd | 4 man/occ_options.Rd | 1 man/spocc_capwords.Rd | 4 man/spocc_colClasses.Rd | 2 tests/testthat/test-common_params.R | 15 - tests/testthat/test-geometry.R | 105 +++++++++ tests/testthat/test-has_coords.R |only tests/testthat/test-occ.R | 125 ----------- tests/testthat/test-options.R | 38 +++ tests/testthat/test-paging.R |only tests/testthat/test-taxize-integration.R |only vignettes/spocc_vignette.Rmd | 331 ++++++++++++++++--------------- 25 files changed, 722 insertions(+), 666 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad
Sanderson) that aims towards a good balance between speed and ease of use. Integer,
floating point and complex numbers are supported, as well as a subset of
trigonometric and statistics functions. Various matrix decompositions are
provided through optional integration with LAPACK and ATLAS libraries.
The 'RcppArmadillo' package includes the header files from the templated
'Armadillo' library. Thus users do not need to install 'Armadillo' itself in
order to use 'RcppArmadillo'. 'Armadillo' is licensed under the MPL 2.0, while
'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the
GNU GPL version 2 or later, as is the rest of 'Rcpp'.
Author: Dirk Eddelbuettel, Romain Francois and Doug Bates
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 0.6.400.2.2 dated 2015-12-16 and 0.6.500.4.0 dated 2016-01-27
RcppArmadillo-0.6.400.2.2/RcppArmadillo/inst/include/armadillo_bits/arma_boost.hpp |only RcppArmadillo-0.6.500.4.0/RcppArmadillo/ChangeLog | 24 RcppArmadillo-0.6.500.4.0/RcppArmadillo/DESCRIPTION | 8 RcppArmadillo-0.6.500.4.0/RcppArmadillo/MD5 | 107 ++-- RcppArmadillo-0.6.500.4.0/RcppArmadillo/configure | 4 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/NEWS.Rd | 19 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/doc/RcppArmadillo-intro.pdf |binary RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/doc/RcppArmadillo-unitTests.pdf |binary RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/RcppArmadillo.h | 7 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/RcppArmadilloConfig.h | 8 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo | 23 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/Col_meat.hpp | 4 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/Cube_meat.hpp | 14 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/Mat_meat.hpp | 14 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/Row_meat.hpp | 4 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/SpMat_meat.hpp | 4 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/arma_str.hpp |only RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/arma_version.hpp | 6 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/arrayops_bones.hpp | 10 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/arrayops_meat.hpp | 5 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/auxlib_bones.hpp | 16 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/auxlib_meat.hpp | 251 +--------- RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/compiler_setup.hpp | 9 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/debug.hpp | 2 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/eop_aux.hpp | 13 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/eop_core_bones.hpp | 5 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/eop_core_meat.hpp | 80 +-- RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/field_meat.hpp | 18 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/fn_accu.hpp | 138 ++++- RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/fn_as_scalar.hpp | 2 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/fn_conv.hpp | 35 + RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/fn_eig_gen.hpp | 79 --- RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/fn_eig_pair.hpp | 8 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/fn_elem.hpp | 29 + RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/fn_kmeans.hpp |only RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/glue_conv_bones.hpp | 15 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/glue_conv_meat.hpp | 207 ++++++-- RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/glue_times_meat.hpp | 2 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/gmm_diag_bones.hpp | 18 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/gmm_diag_meat.hpp | 95 +++ RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/mul_gemm.hpp | 4 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/mul_gemv.hpp | 2 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/mul_herk.hpp | 3 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/mul_syrk.hpp | 2 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/op_dot_bones.hpp | 12 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/op_dot_meat.hpp | 8 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/op_max_meat.hpp | 1 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/op_mean_meat.hpp | 2 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/op_min_meat.hpp | 1 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/subview_cube_each_bones.hpp | 2 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/subview_cube_each_meat.hpp | 72 +- RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/subview_cube_meat.hpp | 64 ++ RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/subview_each_meat.hpp | 44 - RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/subview_elem2_meat.hpp | 24 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/subview_field_meat.hpp | 2 RcppArmadillo-0.6.500.4.0/RcppArmadillo/inst/include/armadillo_bits/subview_meat.hpp | 2 56 files changed, 870 insertions(+), 658 deletions(-)
Title: Graph-Constrained Estimation and Hypothesis Tests
Description: Use the graph-constrained estimation (Grace) procedure to estimate graph-guided linear regression coefficients and use the Grace/GraceI/GraceR tests to perform graph-guided hypothesis tests on the association between the response and the predictors.
Author: Sen Zhao
Maintainer: Sen Zhao <senz@uw.edu>
Diff between Grace versions 0.1.1 dated 2015-10-01 and 0.2 dated 2016-01-27
DESCRIPTION | 14 ++++----- MD5 | 15 ++++++---- NAMESPACE | 2 - R/cvGrace.R |only R/grace.R | 78 ++++++++++++++++++++++++++++-------------------------- R/grace.test.R |only R/make.L.R | 10 +++++- man/grace.Rd | 51 +++++++++++++---------------------- man/grace.test.Rd |only man/make.L.Rd | 8 +++-- 10 files changed, 91 insertions(+), 87 deletions(-)
Title: Directional Statistics
Description: A collection of R functions for directional data analysis.
Author: Michail Tsagris, Giorgos Athineou
Maintainer: Michail Tsagris <mtsagris@yahoo.gr>
Diff between Directional versions 1.6 dated 2016-01-12 and 1.7 dated 2016-01-27
DESCRIPTION | 9 +-- MD5 | 122 +++++++++++++++++++++++---------------------- NAMESPACE | 2 R/Arotation.R | 30 +++++------ R/f.rbing.R | 2 R/mediandir.R |only R/mediandir_2.R |only R/mix.vmf.R | 40 +++++++------- R/vmkde.tune.R | 24 ++++---- R/wood.mle.R |only man/Arotation.Rd | 12 ++-- man/Directional-package.Rd | 30 +++++------ man/bic.mixvmf.Rd | 21 +++---- man/circ.cor1.Rd | 16 +++-- man/circ.cor2.Rd | 9 +-- man/circ.summary.Rd | 15 ++--- man/circlin.cor.Rd | 15 ++--- man/conc.test.Rd | 17 +++--- man/dirknn.Rd | 13 ++-- man/embed.circaov.Rd | 13 ++-- man/euclid.Rd | 13 ++-- man/euclid.inv.Rd | 11 ++-- man/f.rbing.Rd | 21 ++++--- man/fb.saddle.Rd | 15 ++--- man/fishkent.Rd | 19 +++---- man/hcf.aov.Rd | 11 ++-- man/hcf.circaov.Rd | 11 ++-- man/het.aov.Rd | 11 ++-- man/het.circaov.Rd | 7 +- man/kent.contour.Rd | 11 ++-- man/kent.datacontour.Rd | 19 +++---- man/lambert.Rd | 11 ++-- man/lambert.inv.Rd | 17 +++--- man/lr.aov.Rd | 11 ++-- man/lr.circaov.Rd | 15 ++--- man/meandir.test.Rd | 19 +++---- man/mediandir.Rd |only man/mediandir_2.Rd |only man/mix.vmf.Rd | 15 ++--- man/mixvmf.contour.Rd | 21 ++++--- man/rayleigh.Rd | 19 +++---- man/rbingham.Rd | 13 ++-- man/rfb.Rd | 11 ++-- man/rmixvmf.Rd | 13 ++-- man/rot.matrix.Rd | 13 ++-- man/rotation.Rd | 17 +++--- man/rvmf.Rd | 21 ++++--- man/rvonmises.Rd | 17 +++--- man/spher.cor.Rd | 15 ++--- man/spher.reg.Rd | 20 ++++--- man/spherconc.tet.Rd | 11 ++-- man/spml.reg.Rd | 31 +++++------ man/tang.conc.Rd | 9 +-- man/vm.kde.Rd | 21 ++++--- man/vmf.Rd | 7 +- man/vmf.contour.Rd | 7 +- man/vmf.da.Rd | 19 +++---- man/vmf.kde.Rd | 17 +++--- man/vmf.kerncontour.Rd | 5 + man/vmfda.pred.Rd | 5 + man/vmfkde.tune.Rd | 21 ++++--- man/vmfkde.tune_2.Rd | 13 ++-- man/vmkde.tune.Rd | 27 +++++---- man/vmkde.tune_2.Rd | 17 +++--- man/wood.mle.Rd |only 65 files changed, 537 insertions(+), 480 deletions(-)
Title: Temporal Exponential Random Graph Models by Bootstrapped
Pseudolikelihood
Description: Temporal Exponential Random Graph Models (TERGM) estimated by maximum pseudolikelihood with bootstrapped confidence intervals or Markov Chain Monte Carlo maximum likelihood. Goodness of fit assessment for ERGMs, TERGMs, and SAOMs. Micro-level interpretation of ERGMs and TERGMs.
Author: Philip Leifeld [aut, cre],
Skyler J. Cranmer [ctb],
Bruce A. Desmarais [ctb]
Maintainer: Philip Leifeld <philip.leifeld@eawag.ch>
Diff between btergm versions 1.6 dated 2015-12-14 and 1.6.5 dated 2016-01-27
DESCRIPTION | 13 + MD5 | 22 +-- NAMESPACE | 2 R/checkdegeneracy.R |only R/gofmethods.R | 32 ++-- R/gofplot.R | 48 +++--- R/gofstatistics.R | 342 +++++++++++++++++++++++-------------------------- man/btergm-package.Rd | 2 man/btergm.Rd | 2 man/checkdegeneracy.Rd |only man/gofmethods.Rd | 2 man/gofplot.Rd | 15 +- man/gofstatistics.Rd | 13 - 13 files changed, 247 insertions(+), 246 deletions(-)
Title: Generalized Estimating Equation Package
Diff between geepack versions 1.2-0 dated 2014-09-13 and 1.2-0.1 dated 2016-01-27
Description: Generalized estimating equations solver for parameters in
mean, scale, and correlation structures, through mean link,
scale link, and correlation link. Can also handle clustered
categorical responses.
Author: Søren Højsgaard,
Maintainer: Søren Højsgaard
DESCRIPTION | 6 +++---
MD5 | 8 ++++----
src/famstr.cc | 5 ++---
src/inter.cc | 2 --
src/utils.cc | 5 +----
5 files changed, 10 insertions(+), 16 deletions(-)