Title: Methods and Data for Spatial Epidemiology
Description:
Methods and data for cluster detection and disease mapping.
Author: Cici Chen [ctb],
Albert Y. Kim [aut, cre],
Michelle Ross [ctb],
Jon Wakefield [aut]
Maintainer: Albert Y. Kim <albert@stat.washington.edu>
Diff between SpatialEpi versions 1.2.1 dated 2014-06-05 and 1.2.2 dated 2016-01-28
DESCRIPTION | 33 ++-- MD5 | 14 +- NAMESPACE | 6 R/create_geo_objects.R | 16 -- man/NYleukemia.Rd | 2 man/bayes_cluster.Rd | 2 man/create_geo_objects.Rd | 5 src/RcppExports.cpp | 321 ++++++++++++++++++---------------------------- 8 files changed, 162 insertions(+), 237 deletions(-)
Title: Database Interface and 'MySQL' Driver for R
Description: Implements 'DBI' Interface to 'MySQL' and 'MariaDB' Databases.
Author: Jeroen Ooms [aut, cre],
David James [aut],
Saikat DebRoy [aut],
Hadley Wickham [aut],
Jeffrey Horner [aut],
RStudio [cph]
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Diff between RMySQL versions 0.10.7 dated 2015-10-27 and 0.10.8 dated 2016-01-28
DESCRIPTION | 7 + MD5 | 54 +++++++------- NAMESPACE | 2 man/MySQLConnection-class.Rd | 2 man/MySQLDriver-class.Rd | 2 man/MySQLResult-class.Rd | 2 man/constants.Rd | 2 man/db-meta.Rd | 4 - man/dbApply.Rd | 2 man/dbColumnInfo-MySQLConnection-method.Rd | 2 man/dbConnect-MySQLDriver-method.Rd | 4 - man/dbDataType-MySQLDriver-method.Rd | 2 man/dbEscapeStrings.Rd | 2 man/dbGetInfo-MySQLDriver-method.Rd | 4 - man/dbNextResult.Rd | 2 man/dbQuoteIdentifier-MySQLConnection-character-method.Rd | 2 man/dbReadTable.Rd | 2 man/dbUnloadDriver-MySQLDriver-method.Rd | 2 man/dbWriteTable.Rd | 2 man/isIdCurrent.Rd | 4 - man/make.db.names-MySQLConnection-character-method.Rd | 2 man/mysqlBuildTableDefinition.Rd | 2 man/mysqlClientLibraryVersions.Rd | 2 man/mysqlHasDefault.Rd | 2 man/query.Rd | 4 - man/result-meta.Rd | 4 - man/transactions.Rd | 2 src/S4R.h | 23 ----- 28 files changed, 64 insertions(+), 82 deletions(-)
Title: Nested Association Mapping Analysis
Description: Designed for association studies in nested association mapping (NAM) panels, also handling biparental and random panels. It includes functions for genome-wide associations mapping of multiple populations, marker quality control, solving mixed models and finding variance components through REML and Gibbs sampling.
Author: Alencar Xavier, William Muir, Katy Rainey, Shizhong Xu.
Maintainer: Alencar Xavier <xaviera@purdue.edu>
Diff between NAM versions 1.4.2 dated 2015-11-20 and 1.4.3 dated 2016-01-28
NAM-1.4.2/NAM/R/gwas2.R |only NAM-1.4.2/NAM/R/manhattan.R |only NAM-1.4.3/NAM/DESCRIPTION | 8 NAM-1.4.3/NAM/MD5 | 38 +-- NAM-1.4.3/NAM/R/RcppExports.R | 4 NAM-1.4.3/NAM/R/gibbs.R | 154 ++++++++++++ NAM-1.4.3/NAM/R/gwas3c.R |only NAM-1.4.3/NAM/R/manhattan2.R |only NAM-1.4.3/NAM/R/reml.R | 18 + NAM-1.4.3/NAM/R/wrapGE.R |only NAM-1.4.3/NAM/build/vignette.rds |binary NAM-1.4.3/NAM/inst/doc/vignette.Rmd | 15 - NAM-1.4.3/NAM/inst/doc/vignette.html | 413 +++++++++++++++++++++++++--------- NAM-1.4.3/NAM/inst/doc/vignette2.R |only NAM-1.4.3/NAM/inst/doc/vignette2.Rmd |only NAM-1.4.3/NAM/inst/doc/vignette2.html |only NAM-1.4.3/NAM/man/Internals.Rd | 6 NAM-1.4.3/NAM/man/Manhattan.Rd | 5 NAM-1.4.3/NAM/man/NAM-package.Rd | 6 NAM-1.4.3/NAM/man/gibbs.Rd | 10 NAM-1.4.3/NAM/man/gwas.Rd | 21 + NAM-1.4.3/NAM/src/RcppExports.cpp | 13 + NAM-1.4.3/NAM/src/gs.cpp |only NAM-1.4.3/NAM/vignettes/vignette.Rmd | 15 - NAM-1.4.3/NAM/vignettes/vignette2.Rmd |only 25 files changed, 578 insertions(+), 148 deletions(-)
Title: Bayesian QTL Mapping Toolkit
Description: QTL mapping toolkit for inbred crosses and recombinant
inbred lines. Includes maximum likelihood and Bayesian tools.
Author: Charles C. Berry <cberry@ucsd.edu>
Maintainer: Charles C. Berry <cberry@ucsd.edu>
Diff between bqtl versions 1.0-30 dated 2014-01-30 and 1.0-32 dated 2016-01-28
CHANGES | 11 +++++++++++ DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- NAMESPACE | 7 +++++++ R/make.state.matrix.s | 2 +- src/hkreg.c | 2 +- src/lapadj.h | 15 ++------------- src/swapbc1.c | 5 ++--- src/swapf2.c | 8 ++++---- 9 files changed, 41 insertions(+), 35 deletions(-)
Title: Lumped Hydrological Model for Education Purposes
Description: The model, developed at the Vienna University of Technology, is a lumped conceptual rainfall-runoff model, following the structure of the HBV model.
The model runs on a daily or shorter time step and consists of a snow routine, a soil moisture routine and a flow routing routine.
See Parajka, J., R. Merz, G. Bloeschl (2007) Uncertainty and multiple objective calibration in regional water balance modelling: case study in 320 Austrian catchments, Hydrological Processes, 21, 435-446.
Author: Alberto Viglione [aut, cre],
Juraj Parajka [aut]
Maintainer: Alberto Viglione <viglione@hydro.tuwien.ac.at>
Diff between TUWmodel versions 0.1-4 dated 2014-11-10 and 0.1-6 dated 2016-01-28
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/TUWmodel.R | 4 +++- man/TUWmodel.Rd | 11 ++++++----- src/hbvmodel.f | 15 ++++++++++++--- 5 files changed, 29 insertions(+), 17 deletions(-)
Title: Robust Correlation Estimation and Testing Based on Spatial Signs
Description: Provides the spatial sign correlation and the two-stage spatial sign correlation as well as a one-sample test for the correlation coefficient.
Author: Alexander Duerre [aut, cre],
Daniel Vogel [aut]
Maintainer: Alexander Duerre <alexander.duerre@tu-dortmund.de>
Diff between sscor versions 0.1 dated 2015-06-12 and 0.2 dated 2016-01-28
DESCRIPTION | 8 +-- MD5 | 18 +++++-- NAMESPACE | 10 +++- R/SSCM2Shape.R |only R/Shape2SSCM.R |only R/eigenvaluefunctions.R |only R/sscor.R | 109 +++++++++++++++++++++++++++++------------------- inst |only man/SSCM2Shape.Rd |only man/Shape2SSCM.Rd |only man/evSSCM2evShape.Rd |only man/evShape2evSSCM.Rd |only man/sscor-package.Rd | 3 - man/sscor.Rd | 17 ++++--- 14 files changed, 105 insertions(+), 60 deletions(-)
Title: Render SVG Images into PDF, PNG, PostScript, or Bitmap Arrays
Description: Renders vector-based 'svg' images into high-quality custom-size bitmap
arrays using 'librsvg'. The resulting bitmap can be written to e.g. 'png', 'jpeg'
or 'webp' format. In addition, the package can convert images directly to various
formats such as pdf or postscript.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Diff between rsvg versions 0.3 dated 2016-01-18 and 0.4 dated 2016-01-28
DESCRIPTION | 7 ++++--- MD5 | 6 +++--- NEWS | 3 +++ configure | 5 +++-- 4 files changed, 13 insertions(+), 8 deletions(-)
Title: Tools for Remote Sensing Data Analysis
Description: Toolbox for remote sensing image processing and analysis such as
calculating spectral indices, principal component transformation, unsupervised
and supervised classification or fractional cover analyses.
Author: Benjamin Leutner [cre, aut],
Ned Horning [aut]
Maintainer: Benjamin Leutner <benjamin.leutner@uni-wuerzburg.de>
Diff between RStoolbox versions 0.1.3 dated 2015-11-28 and 0.1.4 dated 2016-01-28
DESCRIPTION | 8 - MD5 | 79 ++++++---- NAMESPACE | 16 +- NEWS | 21 ++ R/RStoolbox.R | 6 R/RcppExports.R | 8 - R/estimateHaze.R | 42 +++-- R/getMeta.R | 3 R/getValidation.R |only R/ggR.R | 12 + R/internalFunctions.R | 12 + R/radCor.R | 98 +++++++++---- R/rasterCVA.R | 28 ++- R/rasterPCA.R | 4 R/readMeta.R | 13 + R/rescaleImage.R | 52 +++++-- R/rsOpts.R | 4 R/spectralIndices.R | 60 +++++--- R/superClass.R | 233 ++++++++++++++++---------------- R/sysdata.rda |binary R/unsuperClass.R | 3 R/validateMap.R |only README.md | 2 man/estimateHaze.Rd | 9 - man/getValidation.Rd |only man/radCor.Rd | 14 + man/rasterCVA.Rd | 13 + man/rescaleImage.Rd | 22 +-- man/spectralIndices.Rd | 36 +++- man/superClass.Rd | 11 - man/validateMap.Rd |only src/RcppExports.cpp | 33 +++- src/gainOffsetRescale.cpp | 15 +- src/rescaleImage.cpp |only src/spectralIndices.cpp | 32 ++-- tests/testthat.R | 3 tests/testthat/test-0.R |only tests/testthat/test-estimateHaze.R |only tests/testthat/test-gainOffsetRescale.R |only tests/testthat/test-getValidation.R |only tests/testthat/test-ggplot.R | 29 +++ tests/testthat/test-radCor.R |only tests/testthat/test-rasterCVA.R |only tests/testthat/test-rescaleImage.R |only tests/testthat/test-spectralIndices.R | 2 tests/testthat/test-superClass.R | 122 ++++++++++++---- tests/testthat/test-validateMap.R |only 47 files changed, 696 insertions(+), 349 deletions(-)
Title: Regression with Functional Data
Description: Methods for regression for functional
data, including function-on-scalar, scalar-on-function, and
function-on-function regression. Some of the functions are applicable to
image data.
Author: Lei Huang [aut, cre],
Fabian Scheipl [aut],
Jeff Goldsmith [aut],
Jonathan Gellar [aut],
Jaroslaw Harezlak [aut],
Mathew W. McLean [aut],
Bruce Swihart [aut],
Luo Xiao [aut],
Ciprian Crainiceanu [aut],
Philip Reiss [aut],
Yakuan Chen [ctb],
Sonja Greven [ctb],
Lan Huo [ctb],
Madan Gopal Kundu [ctb],
Julia Wrobel [ctb],
So Young Park [ctb]
Maintainer: Lei Huang <huangracer@gmail.com>
Diff between refund versions 0.1-13 dated 2015-09-08 and 0.1-14 dated 2016-01-28
DESCRIPTION | 33 +- MD5 | 237 ++++++++-------- NAMESPACE | 7 R/DTI-data.R | 7 R/dt_basis.R | 31 +- R/fbps.R | 444 ++++++++++++++++++------------- R/fosr.perm.R | 5 R/fosr.perm.fit.R | 1 R/fpca.face.R | 3 R/fpca.lfda.R |only R/fpca.sc.R | 4 R/mfpca.sc.R | 2 R/pffr-ff.R | 4 R/pffr-methods.R | 45 +++ R/pffr.R | 46 ++- R/plot.peer.R | 8 R/predict.fbps.R |only R/preprocess.pfr.R | 10 R/pspline.setting.R | 66 ++-- R/select_knots.R |only data/DTI.RData |binary man/DTI.Rd | 9 man/DTI2.Rd | 2 man/PEER.Sim.Rd | 2 man/Predict.matrix.dt.smooth.Rd | 4 man/Predict.matrix.fpc.smooth.Rd | 2 man/Predict.matrix.pcre.random.effect.Rd | 2 man/Predict.matrix.peer.smooth.Rd | 2 man/Predict.matrix.pi.smooth.Rd | 2 man/Xt_siginv_X.Rd | 2 man/af.Rd | 2 man/af_old.Rd | 2 man/amc.Rd | 2 man/bayes_fosr.Rd | 2 man/ccb.fpc.Rd | 2 man/cd4.Rd | 2 man/coef.pffr.Rd | 2 man/coefboot.pffr.Rd | 2 man/coefficients.pfr.Rd | 2 man/create.prep.func.Rd | 2 man/expand.call.Rd | 2 man/f_sum.Rd | 2 man/f_sum2.Rd | 2 man/f_sum4.Rd | 2 man/f_trace.Rd | 2 man/fbps.Rd | 19 - man/ff.Rd | 2 man/ffpc.Rd | 2 man/ffpcplot.Rd | 2 man/fgam.Rd | 2 man/fosr.Rd | 2 man/fosr.perm.Rd | 7 man/fosr.vs.Rd | 2 man/fosr2s.Rd | 2 man/fpc.Rd | 2 man/fpca.face.Rd | 4 man/fpca.lfda.Rd |only man/fpca.sc.Rd | 2 man/fpca.ssvd.Rd | 2 man/fpca2s.Rd | 2 man/fpcr.Rd | 2 man/gasoline.Rd | 2 man/getTF.Rd | 2 man/gibbs_cs_fpca.Rd | 2 man/gibbs_cs_wish.Rd | 2 man/gibbs_mult_fpca.Rd | 2 man/gibbs_mult_wish.Rd | 2 man/gls_cs.Rd | 2 man/lf.Rd | 2 man/lf.vd.Rd | 2 man/lf_old.Rd | 2 man/lofocv.Rd | 2 man/lpeer.Rd | 2 man/lpfr.Rd | 2 man/mfpca.sc.Rd | 2 man/model.matrix.pffr.Rd | 2 man/ols_cs.Rd | 2 man/pcre.Rd | 2 man/peer.Rd | 2 man/peer_old.Rd | 2 man/pffr.Rd | 24 + man/pffr.check.Rd |only man/pffrGLS.Rd | 2 man/pffrSim.Rd | 2 man/pfr.Rd | 2 man/pfr_old.Rd | 2 man/pfr_plot.gam.Rd | 2 man/plot.fosr.Rd | 2 man/plot.fosr.vs.Rd | 2 man/plot.fpcr.Rd | 2 man/plot.lpeer.Rd | 2 man/plot.peer.Rd | 8 man/plot.pffr.Rd | 2 man/plot.pfr.Rd | 2 man/predict.fbps.Rd |only man/predict.fgam.Rd | 2 man/predict.fosr.vs.Rd | 2 man/predict.pffr.Rd | 2 man/predict.pfr.Rd | 2 man/print.summary.pffr.Rd | 2 man/pwcv.Rd | 2 man/qq.pffr.Rd |only man/quadWeights.Rd | 2 man/re.Rd | 2 man/refund-package.Rd | 1 man/residuals.pffr.Rd | 2 man/rlrt.pfr.Rd | 2 man/sff.Rd | 2 man/smooth.construct.dt.smooth.spec.Rd | 14 man/smooth.construct.fpc.smooth.spec.Rd | 2 man/smooth.construct.pcre.smooth.spec.Rd | 2 man/smooth.construct.peer.smooth.spec.Rd | 2 man/smooth.construct.pi.smooth.spec.Rd | 2 man/smooth.construct.pss.smooth.spec.Rd | 2 man/sofa.Rd | 2 man/summary.pffr.Rd | 2 man/summary.pfr.Rd | 2 man/vb_cs_fpca.Rd | 2 man/vb_cs_wish.Rd | 2 man/vb_mult_fpca.Rd | 2 man/vb_mult_wish.Rd | 2 man/vis.fgam.Rd | 2 man/vis.pfr.Rd | 2 123 files changed, 713 insertions(+), 508 deletions(-)
Title: Phenotypic Integration Index
Description: Provides functions to estimate the size-controlled phenotypic integration index, a novel method by Torices & Méndez (2014) to solve problems due to individual size when estimating integration (namely, larger individuals have larger components, which will drive a correlation between components only due to resource availability that might obscure the observed measures of integration). In addition, the package also provides the classical estimation by Wagner (1984), bootstrapping and jackknife methods to calculate confidence intervals and a significance test for both integration indices.
Author: R. Torices, A. J. Muñoz-Pajares
Maintainer: A. J. Muñoz-Pajares <ajesusmp@cibio.up.pt>
Diff between PHENIX versions 1.2 dated 2015-04-29 and 1.2.1 dated 2016-01-28
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NAMESPACE | 4 ++++ NEWS | 8 ++++++++ man/PHENIX-package.Rd | 3 +++ 5 files changed, 23 insertions(+), 8 deletions(-)
Title: Solve Systems of Nonlinear Equations
Description: Solve a system of nonlinear equations using a Broyden or a Newton method
with a choice of global strategies such as line search and trust region.
There are options for using a numerical or user supplied Jacobian,
for specifying a banded numerical Jacobian and for allowing
a singular or ill-conditioned Jacobian.
Author: Berend Hasselman
Maintainer: Berend Hasselman <bhh@xs4all.nl>
Diff between nleqslv versions 2.9.1 dated 2015-11-26 and 3.0 dated 2016-01-28
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NEWS | 12 +++++++++++- R/nleqslv.R | 10 ++++++++-- R/searchzeros.R | 19 ++++++++++++++++--- man/nleqslv.Rd | 6 +++--- man/searchzeros.Rd | 35 ++++++++++++++++++++++++----------- man/testnslv.Rd | 2 +- src/nleqslv.c | 13 ++++++++----- tests/brdtri.Rout | 12 ++++++------ tests/brdtri.Rout.save | 12 ++++++------ 11 files changed, 97 insertions(+), 52 deletions(-)
Title: Mean-Variance Regularization
Description: This is a non-parametric method for joint adaptive mean-variance regularization and variance stabilization of high-dimensional data. It is suited for handling difficult problems posed by high-dimensional multivariate datasets (p >> n paradigm). Among those are that the variance is often a function of the mean, variable-specific estimators of variances are not reliable, and tests statistics have low powers due to a lack of degrees of freedom. Key features include:
(i) Normalization and/or variance stabilization of the data,
(ii) Computation of mean-variance-regularized t-statistics (F-statistics to follow),
(iii) Generation of diverse diagnostic plots,
(iv) Computationally efficient implementation using C/C++ interfacing and an option for parallel computing to enjoy a faster and easier experience in the R environment.
Author: Jean-Eudes Dazard [aut, cre], Hua Xu [ctb], Alberto Santana [ctb]
Maintainer: Jean-Eudes Dazard <jxd101@case.edu>
Diff between MVR versions 1.30.2 dated 2015-07-11 and 1.30.3 dated 2016-01-28
DESCRIPTION | 13 +++----- MD5 | 7 ++-- inst/NEWS | 95 ++++++++++++++++++++++++++++++++---------------------------- inst/doc |only src/MVRc.h | 27 +++++------------ 5 files changed, 69 insertions(+), 73 deletions(-)
Title: Computational Methods for Immune Cell-Type Subsets
Description: Provided are Computational methods for Immune Cell-type Subsets, including:(1) DCQ (Digital Cell Quantifier) to infer global dynamic changes in immune cell quantities within a complex tissue; and (2) VoCAL (Variation of Cell-type Abundance Loci) a deconvolution-based method that utilizes transcriptome data to infer the quantities of immune-cell types, and then uses these quantitative traits to uncover the underlying DNA loci.
Author: Yael Steuerman [aut, cre],
Irit Gat-Viks [aut]
Maintainer: Yael Steuerman <yaelsteu@mail.tau.ac.il>
Diff between ComICS versions 1.0.1 dated 2015-12-14 and 1.0.2 dated 2016-01-28
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/IterativeFilteration.R | 16 ++++++++++++---- R/deconvolution.R | 21 +++++++++++---------- R/helperFunc.R | 11 ++++++----- data/vocalEx.RData |binary 6 files changed, 37 insertions(+), 27 deletions(-)
Title: Tools for CM SAF Netcdf Data
Description: The Satellite Application Facility on Climate Monitoring (CM SAF)
is a ground segment of the European Organization for the Exploitation of
Meteorological Satellites (EUMETSAT) and one of EUMETSATs Satellite Application
Facilities. The CM SAF contributes to the sustainable observing of the climate
system by providing Essential Climate Variables related to the energy and water
cycle of the atmosphere (www.cmsaf.eu). It is a joint cooperation of seven
National Meteorological and Hydrological Services, including the Deutscher
Wetterdienst (DWD).
The cmsaf R-package provides a small collection of R-functions, which are
inspired by the Climate Data Operators (cdo). This gives the opportunity to
analyse and manipulate CM SAF data without the need of installing cdo.
The cmsaf R-package is tested for CM SAF netcdf data, which are structured
in three-dimensional arrays (longitude, latitude, time) on a rectangular grid.
Layered CM SAF data have to be converted with the provided `levbox_mergetime`
function. The cmsaf R-package functions have only minor checks for deviations
from the recommended data structure, and give only few specific error messages.
Thus, there is no warranty of accurate results.
A Windows binary file and scripts for an easy application of the functions are
provided at the CM SAF homepage (http://www.cmsaf.eu/EN/Products/Tools/Tools_node.html).
Author: Steffen Kothe <Steffen.Kothe@dwd.de>
Maintainer: Steffen Kothe <Steffen.Kothe@dwd.de>
Diff between cmsaf versions 1.6 dated 2016-01-19 and 1.6.1 dated 2016-01-28
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/selpoint.R | 4 ++-- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: TH's Data Archive
Description: Contains data sets used in other packages Torsten Hothorn
maintains.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between TH.data versions 1.0-6 dated 2015-01-05 and 1.0-7 dated 2016-01-28
DESCRIPTION | 12 ++++++------ MD5 | 12 +++++++----- NAMESPACE | 6 ++++++ data/geyser.rda |only data/mammoexp.rda |binary man/GBSG2.Rd | 10 ++++------ man/Westbc.Rd | 1 - man/geyser.Rd |only 8 files changed, 23 insertions(+), 18 deletions(-)
Title: R Interface to X-13-ARIMA-SEATS
Description: Easy-to-use interface to X-13-ARIMA-SEATS, the
seasonal adjustment software by the US Census Bureau. It offers full
access to almost all options and outputs of X-13, including X-11 and SEATS,
automatic ARIMA model search, outlier detection and support for user
defined holiday variables, such as Chinese New Year or Indian Diwali. It
also includes a Shiny-based graphical user interface. Seasonal uses the
X-13 binaries from the 'x13binary' package.
Author: Christoph Sax
Maintainer: Christoph Sax <christoph.sax@gmail.com>
Diff between seasonal versions 1.1.0 dated 2015-10-08 and 1.2.0 dated 2016-01-28
seasonal-1.1.0/seasonal/R/defunct.R |only seasonal-1.1.0/seasonal/man/seasonal-defunct.Rd |only seasonal-1.1.0/seasonal/vignettes/seas.tex |only seasonal-1.2.0/seasonal/DESCRIPTION | 17 seasonal-1.2.0/seasonal/MD5 | 94 ++--- seasonal-1.2.0/seasonal/NAMESPACE | 9 seasonal-1.2.0/seasonal/NEWS | 59 +++ seasonal-1.2.0/seasonal/R/checkX13.R | 11 seasonal-1.2.0/seasonal/R/genhol.R | 19 + seasonal-1.2.0/seasonal/R/identify.R | 2 seasonal-1.2.0/seasonal/R/import.spc.R | 65 ++- seasonal-1.2.0/seasonal/R/inspect-sub.R | 2 seasonal-1.2.0/seasonal/R/plot.R | 8 seasonal-1.2.0/seasonal/R/read_series.R | 3 seasonal-1.2.0/seasonal/R/read_udg.R | 7 seasonal-1.2.0/seasonal/R/seas.R | 8 seasonal-1.2.0/seasonal/R/seasonal-package.R | 52 ++ seasonal-1.2.0/seasonal/R/series.R | 2 seasonal-1.2.0/seasonal/R/startup.R | 31 + seasonal-1.2.0/seasonal/R/x13messages.R | 85 ++-- seasonal-1.2.0/seasonal/README.md | 80 +--- seasonal-1.2.0/seasonal/build/vignette.rds |binary seasonal-1.2.0/seasonal/demo/seas.R | 8 seasonal-1.2.0/seasonal/inst/doc/seas.Rnw | 12 seasonal-1.2.0/seasonal/inst/doc/seas.pdf |binary seasonal-1.2.0/seasonal/man/SPECS.Rd | 4 seasonal-1.2.0/seasonal/man/checkX13.Rd | 7 seasonal-1.2.0/seasonal/man/cpi.Rd | 7 seasonal-1.2.0/seasonal/man/easter.Rd | 9 seasonal-1.2.0/seasonal/man/exp.Rd | 3 seasonal-1.2.0/seasonal/man/final.Rd | 20 - seasonal-1.2.0/seasonal/man/genhol.Rd | 86 ++-- seasonal-1.2.0/seasonal/man/identify.seas.Rd | 4 seasonal-1.2.0/seasonal/man/iip.Rd | 13 seasonal-1.2.0/seasonal/man/import.spc.Rd | 59 ++- seasonal-1.2.0/seasonal/man/import.ts.Rd | 10 seasonal-1.2.0/seasonal/man/inspect.Rd | 28 - seasonal-1.2.0/seasonal/man/na.x13.Rd | 5 seasonal-1.2.0/seasonal/man/out.Rd | 31 - seasonal-1.2.0/seasonal/man/outlier.Rd | 4 seasonal-1.2.0/seasonal/man/plot.seas.Rd | 32 - seasonal-1.2.0/seasonal/man/qs.Rd | 32 - seasonal-1.2.0/seasonal/man/seas.Rd | 135 +++---- seasonal-1.2.0/seasonal/man/seasonal-package.Rd | 67 +++ seasonal-1.2.0/seasonal/man/series.Rd | 417 ++++++++++++------------ seasonal-1.2.0/seasonal/man/static.Rd | 28 - seasonal-1.2.0/seasonal/man/summary.seas.Rd | 26 - seasonal-1.2.0/seasonal/tests |only seasonal-1.2.0/seasonal/vignettes/README.tex | 86 ---- seasonal-1.2.0/seasonal/vignettes/seas.Rnw | 12 50 files changed, 963 insertions(+), 736 deletions(-)
Title: Efficient Iterator for Permutations and Combinations
Description: It helps in 1) generating permutations and combinations with or
without replacement; 2) with distinct items or non-distinct items (multiset);
3) calculating number of combinations or permutations in various situations. All
generated sequences are in lexicographical order (AKA, dictionary order). The
algorithms to generate permutations and combinations are memory efficient. These
iterative algorithms enable users to process all sequences without putting all
results in the memory at the same time. The algorithms are written in C/C++ for
faster performances.
Author: Randy Lai [aut, cre], Martin Broadhurst [aut]
Maintainer: Randy Lai <randy.cs.lai@gmail.com>
Diff between iterpc versions 0.2.7 dated 2015-04-16 and 0.2.8 dated 2016-01-28
iterpc-0.2.7/iterpc/tests/test-all.R |only iterpc-0.2.8/iterpc/DESCRIPTION | 22 +++-- iterpc-0.2.8/iterpc/MD5 | 37 ++++----- iterpc-0.2.8/iterpc/NAMESPACE | 5 + iterpc-0.2.8/iterpc/R/combination.R | 24 +++--- iterpc-0.2.8/iterpc/R/iterator.R | 65 ++++++++-------- iterpc-0.2.8/iterpc/R/permutation.R | 24 +++--- iterpc-0.2.8/iterpc/R/utilities.R | 47 +++++++++--- iterpc-0.2.8/iterpc/README.md | 9 +- iterpc-0.2.8/iterpc/man/getall.Rd | 6 - iterpc-0.2.8/iterpc/man/getcurrent.Rd | 4 - iterpc-0.2.8/iterpc/man/getlength.Rd | 4 - iterpc-0.2.8/iterpc/man/getnext.Rd | 4 - iterpc-0.2.8/iterpc/man/iter_wrapper.Rd |only iterpc-0.2.8/iterpc/man/iterpc.Rd | 16 +--- iterpc-0.2.8/iterpc/man/multichoose.Rd | 6 - iterpc-0.2.8/iterpc/man/nc_multiset.Rd | 10 +- iterpc-0.2.8/iterpc/man/np_multiset.Rd | 6 - iterpc-0.2.8/iterpc/tests/testthat.R |only iterpc-0.2.8/iterpc/tests/testthat/test-combination.R | 70 +++++++++--------- iterpc-0.2.8/iterpc/tests/testthat/test-permutation.R | 56 +++++++------- 21 files changed, 230 insertions(+), 185 deletions(-)
Title: Functions to Automate Downloading Geospatial Data Available from
Several Federated Data Sources
Description: Functions to automate downloading geospatial data available from
several federated data sources (mainly sources maintained by the US Federal
government). Currently, the package allows for retrieval of five datasets:
The National Elevation Dataset digital elevation models (1 and 1/3 arc-second;
USGS); The National Hydrography Dataset (USGS); The Soil Survey Geographic
(SSURGO) database from the National Cooperative Soil Survey (NCSS), which is
led by the Natural Resources Conservation Service (NRCS) under the USDA; the
Global Historical Climatology Network (GHCN), coordinated by National Climatic
Data Center at NOAA; and the International Tree Ring Data Bank. Additional
data sources are in the works, including global DEM resources (ETOPO1, ETOPO5,
ETOPO30, SRTM), global soils (HWSD), MODIS satellite data products, the National
Atlas (US), Natural Earth, PRISM, and WorldClim.
Author: R. Kyle Bocinsky [aut, cre], Dylan Beaudette [ctb]
Maintainer: R. Kyle Bocinsky <bocinsky@gmail.com>
Diff between FedData versions 2.0.3 dated 2016-01-20 and 2.0.4 dated 2016-01-28
DESCRIPTION | 16 ++-- LICENSE |only MD5 | 19 +++-- R/SSURGO_FUNCTIONS.R | 9 +- README.md | 177 +++++++++++++++++++++++++++++++++++++++++++++---- inst/CITATION |only inst/FedDataTester.R | 39 ++++++++-- inst/img |only man/FedData-package.Rd | 49 +++++++++---- 9 files changed, 258 insertions(+), 51 deletions(-)
Title: A Collection of Statistical Tools for Biologists
Description: Contains functions from: Aho, K. (2014) Foundational and Applied Statistics for Biologists using R. CRC/Taylor and Francis, Boca Raton, FL, ISBN: 978-1-4398-7338-0.
Author: Ken Aho
Maintainer: Ken Aho <kenaho1@gmail.com>
Diff between asbio versions 1.2-5 dated 2015-09-16 and 1.3-1 dated 2016-01-28
DESCRIPTION | 10 +- MD5 | 160 ++++++++++++++++++++++--------------------- NAMESPACE | 2 R/bplot.r | 8 +- R/huber.mu.R | 7 + R/km.R | 73 ++++++++++--------- R/one.sample.t.R | 2 R/one.sample.z.R | 2 R/qq.Plot.R | 168 ++++++++++++++++++++++++++++++---------------- R/selftest.sampd.r | 22 +++--- build/vignette.rds |binary data/SexDeterm.rda |only data/savage.rda |only data/simberloff.rda |only man/D.sq.Rd | 2 man/Kullback.rd | 4 - man/MC.test.Rd | 2 man/MS.test.Rd | 2 man/Mode.rd | 4 - man/R.hat.rd | 3 man/SM.temp.moist.Rd | 4 - man/Semiconductor.rd | 4 - man/SexDeterm.Rd |only man/Venn.rd | 10 +- man/aids.rd | 2 man/alfalfa.split.plot.Rd | 2 man/anm.LV.rd | 2 man/anm.cont.pdf.rd | 2 man/anm.mc.bvn.rd | 2 man/anm.samp.design.Rd | 4 - man/asthma.Rd | 2 man/auc.rd | 2 man/baby.walk.Rd | 2 man/bone.rd | 6 - man/boot.ci.M.rd | 2 man/bootstrap.rd | 2 man/bplot.rd | 7 + man/bv.boxplot.Rd | 2 man/chi.plot.Rd | 2 man/ci.boot.rd | 2 man/ci.impt.Rd | 4 - man/ci.median.rd | 2 man/ci.mu.Rd | 2 man/ci.mu.oneside.rd | 4 - man/ci.p.rd | 4 - man/ci.prat.ak.Rd | 4 - man/ci.prat.rd | 4 - man/ci.sigma.rd | 4 - man/ci.strat.rd | 2 man/cliff.env.Rd | 2 man/cliff.sp.rd | 2 man/death.penalty.rd | 4 - man/depression.rd | 2 man/exercise.repeated.Rd | 2 man/garments.rd | 2 man/heart.rd | 2 man/joint.ci.bonf.rd | 2 man/km.Rd | 8 +- man/life.exp.Rd | 2 man/mcmc.norm.hier.rd | 2 man/modlevene.test.Rd | 2 man/moose.sel.Rd | 2 man/one.sample.t.rd | 2 man/paik.rd | 2 man/pairw.anova.Rd | 2 man/pairw.fried.rd | 2 man/pairw.kw.rd | 2 man/partial.R2.rd | 2 man/partial.resid.plot.rd | 2 man/perm.fact.test.rd | 4 - man/polyamine.rd | 2 man/power.z.test.Rd | 4 - man/press.rd | 2 man/prostate.rd | 2 man/pseudo.v.Rd | 4 - man/qq.Plot.Rd | 26 ++++--- man/savage.Rd |only man/see.nlm.rd | 2 man/simberloff.Rd |only man/skew.kurt.rd | 8 +- man/tukey.add.test.rd | 4 - man/veneer.rd | 2 man/wheat.rd | 2 man/whickham.rd | 10 +- 84 files changed, 377 insertions(+), 305 deletions(-)