Sat, 30 Jan 2016

Package smcfcs updated to version 1.2.0 with previous version 1.1.1 dated 2015-11-23

Title: Multiple Imputation of Covariates by Substantive Model Compatible Fully Conditional Specification
Description: Implements multiple imputation of missing covariates by Substantive Model Compatible Fully Conditional Specification. This is a modification of the popular FCS/chained equations multiple imputation approach, and allows imputation of missing covariate values from models which are compatible with the user specified substantive model.
Author: Jonathan Bartlett [aut, cre]
Maintainer: Jonathan Bartlett <jwb133@googlemail.com>

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Package miceadds updated to version 1.6-0 with previous version 1.5-0 dated 2015-11-22

Title: Some Additional Multiple Imputation Functions, Especially for 'mice'
Description: Contains some auxiliary functions for multiple imputation which complements existing functionality in R. In addition to some utility functions, main features include plausible value imputation, multilevel imputation functions, imputation using partial least squares (PLS) for high dimensional predictors, nested multiple imputation, and two-way imputation.
Author: Alexander Robitzsch [aut, cre], Simon Grund [ctb], Thorsten Henke [ctb]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>

Diff between miceadds versions 1.5-0 dated 2015-11-22 and 1.6-0 dated 2016-01-30

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Package matchingMarkets updated to version 0.2-1 with previous version 0.1-7 dated 2015-10-11

Title: Analysis of Stable Matchings
Description: Implements structural estimators to correct for the sample selection bias from observed outcomes in matching markets. This includes one-sided matching of agents into groups as well as two-sided matching of students to schools. The package also contains R code for three matching algorithms: the deferred-acceptance (or Gale-Shapley) algorithm for stable marriage and college admissions problems, the top-trading-cycles algorithm for house allocation and a partitioning linear programme for the roommates problem.
Author: Thilo Klein
Maintainer: Thilo Klein <thilo@klein.uk>

Diff between matchingMarkets versions 0.1-7 dated 2015-10-11 and 0.2-1 dated 2016-01-30

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Package jiebaR updated to version 0.8 with previous version 0.7 dated 2015-12-06

Title: Chinese Text Segmentation
Description: Chinese text segmentation, keyword extraction and speech tagging For R.
Author: Qin Wenfeng, and the authors of CppJieba for the included version of CppJieba
Maintainer: Qin Wenfeng <mail@qinwenfeng.com>

Diff between jiebaR versions 0.7 dated 2015-12-06 and 0.8 dated 2016-01-30

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Package CDM updated to version 4.7-0 with previous version 4.6-0 dated 2015-11-04

Title: Cognitive Diagnosis Modeling
Description: Functions for cognitive diagnosis modeling and multidimensional item response modeling for dichotomous and polytomous data. This package enables the estimation of the DINA and DINO model, the multiple group (polytomous) GDINA model, the multiple choice DINA model, the general diagnostic model (GDM), the multidimensional linear compensatory item response model and the structured latent class model (SLCA).
Author: Alexander Robitzsch [aut, cre], Thomas Kiefer [aut], Ann Cathrice George [aut], Ali Uenlue [aut]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>

Diff between CDM versions 4.6-0 dated 2015-11-04 and 4.7-0 dated 2016-01-30

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Package BIFIEsurvey updated to version 1.8-0 with previous version 1.7-0 dated 2015-11-04

Title: Tools for Survey Statistics in Educational Assessment
Description: Contains tools for survey statistics (especially in educational assessment) for datasets with replication designs (jackknife, bootstrap, replicate weights). Descriptive statistics, linear and logistic regression, path models for manifest variables with measurement error correction and two-level hierarchical regressions for weighted samples are included. Statistical inference can be conducted for multiply imputed datasets and nested multiply imputed datasets. This package is developed by BIFIE (Federal Institute for Educational Research, Innovation and Development of the Austrian School System; Salzburg, Austria).
Author: BIFIE
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>

Diff between BIFIEsurvey versions 1.7-0 dated 2015-11-04 and 1.8-0 dated 2016-01-30

 DESCRIPTION                        |   20 +-
 MD5                                |   86 ++++-----
 NAMESPACE                          |  122 ++++++--------
 R/BIFIE.correl.R                   |    6 
 R/BIFIE.crosstab.R                 |    8 
 R/BIFIE.data.boot.R                |    4 
 R/BIFIE.data.jack.R                |    4 
 R/BIFIE.data.transform.R           |    6 
 R/BIFIE.derivedParameters.R        |   16 -
 R/BIFIE.freq.R                     |    2 
 R/BIFIE.hist.R                     |    8 
 R/BIFIE.linreg.R                   |   14 -
 R/BIFIE.logistreg.R                |    8 
 R/BIFIE.mva.R                      |    6 
 R/BIFIE.pathmodel.R                |    5 
 R/BIFIE.twolevelreg.R              |   19 +-
 R/BIFIE.univar.R                   |   22 +-
 R/BIFIE.univar.test.R              |    5 
 R/BIFIE.waldtest.R                 |    2 
 R/BIFIE_NMI_inference_parameters.R |    2 
 R/BIFIE_by_helper_pureR.R          |    6 
 R/create_summary_table.R           |    9 -
 R/load.BIFIE.data.R                |    2 
 R/load.BIFIEdata.files.R           |   12 -
 R/save.BIFIE.data.R                |    2 
 R/summary.BIFIE.data.R             |    4 
 R/vcov.BIFIE.survey.R              |    2 
 R/write.BIFIE.data.R               |    4 
 R/zzz.R                            |   10 -
 data/data.bifie01.rda              |binary
 data/data.pisaNLD.rda              |binary
 data/data.test1.rda                |binary
 data/data.timss1.ind.rda           |binary
 data/data.timss1.rda               |binary
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 data/data.timss4.rda               |binary
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 inst/NEWS                          |   15 +
 man/BIFIE.data.Rd                  |    2 
 man/BIFIE.derivedParameters.Rd     |    2 
 man/BIFIEsurvey-package.Rd         |    4 
 src/jack_dataprep.cpp              |   23 +-
 src/univar.cpp                     |  320 ++++++++++++++++++++-----------------
 44 files changed, 411 insertions(+), 371 deletions(-)

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New package asymLD with initial version 0.1
Package: asymLD
Type: Package
Title: Asymmetric Linkage Disequilibrium (ALD) for Polymorphic Genetic Data
Version: 0.1
Date: 2016-01-29
Author: Richard M. Single
Maintainer: Richard M. Single <rsingle@uvm.edu>
Suggests: haplo.stats, fields
LazyLoad: Yes
Description: Computes asymmetric LD measures (ALD) for multi-allelic genetic data. These measures are identical to the correlation measure (r) for bi-allelic data.
License: GPL-2
Packaged: 2016-01-30 15:57:20 UTC; Rich
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2016-01-30 19:00:02

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Package CHsharp (with last version 0.4) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2015-10-15 0.4
2012-11-05 0.3
2008-07-30 0.2

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Package CEGO (with last version 2.0.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2015-10-06 2.0.0
2015-01-06 1.0.1108

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Package CHAT (with last version 1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-08-08 1.1
2014-04-30 1.0

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Package CHCN (with last version 1.5) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-06-08 1.5
2012-04-28 1.4
2011-09-23 1.3
2011-08-05 1.2

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Package CFC (with last version 1.0.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2015-12-21 1.0.1
2015-12-18 1.0.0
2015-03-12 0.7.0

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Package CGP (with last version 2.0-2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-09-21 2.0-2

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Package CHNOSZ (with last version 1.0.7) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2015-11-19 1.0.7
2015-10-19 1.0.6
2015-05-19 1.0.5
2014-02-12 1.0.3.1
2014-01-12 1.0.3
2013-07-04 1.0.1
2013-03-28 1.0.0
2013-01-01 0.9-9
2011-08-23 0.9-7
2011-08-18 0.9-6
2011-04-05 0.9-5
2011-02-23 0.9-4
2010-12-22 0.9-3
2010-08-26 0.9-2
2010-07-24 0.9-1
2009-11-30 0.9
2009-04-23 0.8

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Package CEoptim (with last version 1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2015-08-22 1.1
2015-02-26 1.0

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Package CDVine (with last version 1.4) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2015-10-29 1.4
2015-07-30 1.3
2014-03-27 1.2
2013-08-26 1.1-13
2013-04-25 1.1-12
2013-01-17 1.1-11
2012-07-03 1.1-9
2012-07-02 1.1-8
2012-05-22 1.1-7
2012-05-14 1.1-6
2011-12-30 1.1-5
2011-10-23 1.1-4
2011-10-20 1.1-3
2011-10-12 1.1-2
2011-09-05 1.1-1
2011-06-20 1.1
2011-06-03 1.0-4
2011-05-30 1.0-3
2011-05-23 1.0-2
2011-05-18 1.0-1
2011-04-23 1.0

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Package CEC (with last version 0.9.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2015-02-03 0.9.3
2014-11-15 0.9.2
2014-10-09 0.9.1

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Package MCMCglmm updated to version 2.22.1 with previous version 2.22 dated 2015-09-21

Title: MCMC Generalised Linear Mixed Models
Description: MCMC Generalised Linear Mixed Models.
Author: Jarrod Hadfield
Maintainer: Jarrod Hadfield <j.hadfield@ed.ac.uk>

Diff between MCMCglmm versions 2.22 dated 2015-09-21 and 2.22.1 dated 2016-01-30

 DESCRIPTION      |    6 +++---
 MD5              |    8 ++++----
 src/MCMCglmm.h   |   10 +++++++++-
 src/MCMCglmmcc.h |   10 +++++-----
 src/cs.h         |   14 ++++++++++++++
 5 files changed, 35 insertions(+), 13 deletions(-)

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Package zooaRch updated to version 1.2 with previous version 1.1 dated 2015-07-24

Title: Analytical Tools for Zooarchaeological Data
Description: The analysis and inference of faunal remains recovered from archaeological sites concerns the field of zooarchaeology. The zooaRch package provides analytical tools to make inferences on zooarchaeological data. Functions in this package allow users to read, manipulate, visualize, and analyze zooarchaeological data.
Author: Erik Otarola-Castillo, Jesse Wolfhagen, Max D. Price
Maintainer: Erik Otarola-Castillo <eotarolacastillo@fas.harvard.edu>

Diff between zooaRch versions 1.1 dated 2015-07-24 and 1.2 dated 2016-01-30

 DESCRIPTION                    |   19 -
 MD5                            |   30 +-
 NAMESPACE                      |    2 
 R/zooaRch.r                    |    6 
 build/vignette.rds             |binary
 inst/doc/zooaRch-vignette.html |  539 ++++++++++++++---------------------------
 inst/doc/zooaRch-vignette.rmd  |    2 
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 man/winslow.fuse.Rd            |    6 
 man/zooaRch-package.Rd         |    8 
 vignettes/zooaRch-vignette.rmd |    2 
 16 files changed, 265 insertions(+), 421 deletions(-)

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Package TMB updated to version 1.6.6 with previous version 1.6.5 dated 2015-12-03

Title: Template Model Builder: A General Random Effect Tool Inspired by ADMB
Description: With this tool, a user should be able to quickly implement complex random effect models through simple C++ templates. The package combines CppAD (C++ automatic differentiation), Eigen (templated matrix-vector library) and CHOLMOD (sparse matrix routines available from R) to obtain an efficient implementation of the applied Laplace approximation with exact derivatives. Key features are: Automatic sparseness detection, parallelism through BLAS and parallel user templates.
Author: Kasper Kristensen [aut, cre, cph], Brad Bell [cph], Hans Skaug [ctb], Arni Magnusson [ctb], Casper Berg [ctb], Anders Nielsen [ctb], Martin Maechler [ctb], Theo Michelot [ctb], Mollie Brooks [ctb], Cole Monnahan [ctb]
Maintainer: Kasper Kristensen <kaskr@dtu.dk>

Diff between TMB versions 1.6.5 dated 2015-12-03 and 1.6.6 dated 2016-01-30

 DESCRIPTION                      |    8 +-
 MD5                              |   22 ++---
 NEWS                             |   22 +++++
 R/validation.R                   |   16 +++-
 inst/include/TMB.hpp             |    7 +
 inst/include/atomic_macro.hpp    |  147 +++++++++++++++++++--------------------
 inst/include/atomic_math.hpp     |  128 ++++++++++++++++++++++-----------
 inst/include/cppad/configure.hpp |    2 
 inst/include/tmbutils/array.hpp  |   34 ++++++++-
 inst/include/tmbutils/vector.hpp |   18 ++--
 man/oneStepPredict.Rd            |    4 -
 src/utils.c                      |    2 
 12 files changed, 258 insertions(+), 152 deletions(-)

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New package stripless with initial version 1.0
Package: stripless
Type: Package
Title: Structured Trellis Displays Without Strips for Lattice Graphics
Version: 1.0
Date: 2016-01-30
Authors@R: person("Bert", "Gunter", email = "bgunter@comcast.net", role = c("aut","cre") )
Description: For making Trellis-type conditioning plots without strip labels. This is useful for displaying the structure of results from factorial designs and other studies when many conditioning variables would clutter the display with layers of redundant strip labels. Settings of the variables are encoded by layout and spacing in the trellis array and decoded by a separate legend. The functionality is implemented by a single S3 generic strucplot() function that is a wrapper for the Lattice package's xyplot() function. This allows access to all Lattice graphics capabilities in the usual way.
License: GPL-2 | GPL-3
Depends: utils,lattice
Suggests: datasets,grDevices
Imports: stats,graphics,grid
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-01-30 00:53:23 UTC; bgunter
Author: Bert Gunter [aut, cre]
Maintainer: Bert Gunter <bgunter@comcast.net>
Repository: CRAN
Date/Publication: 2016-01-30 10:04:29

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Package StockChina updated to version 0.3.1 with previous version 0.3 dated 2015-09-18

Title: Real-Time Stock Price & Volume in China Market
Description: With this package, users can obtain the real-time price and volume information of stocks in China market, as well as the information of the stock index. This package adopted the API from Sina Finance (http://finance.sina.com.cn/).
Author: Xiaodong Deng
Maintainer: Xiaodong Deng <xd_deng@hotmail.com>

Diff between StockChina versions 0.3 dated 2015-09-18 and 0.3.1 dated 2016-01-30

 DESCRIPTION     |   10 +++++-----
 MD5             |    6 +++---
 R/index.CN.R    |    3 ++-
 man/stock.CN.Rd |    6 +++---
 4 files changed, 13 insertions(+), 12 deletions(-)

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