Title: Network Visualization using 'vis.js' Library
Description: Provides an R interface to the 'vis.js' JavaScript charting library. It allows an interactive visualization of networks.
Author: Almende B.V. [aut, cph] (vis.js library in htmlwidgets/lib,
http://visjs.org, http://www.almende.com/home),
Benoit Thieurmel [aut, cre] (R interface)
Maintainer: Benoit Thieurmel <bt@datak.fr>
Diff between visNetwork versions 0.2.0 dated 2015-12-21 and 0.2.1 dated 2016-01-31
DESCRIPTION | 12 - MD5 | 86 +++++--- NAMESPACE | 12 + NEWS | 12 + R/dependencies.R | 45 ++++ R/visEdges.R | 1 R/visExport.R |only R/visFit.R | 2 R/visFocus.R | 2 R/visGetPositions.R |only R/visIgraph.R |only R/visIgraphLayout.R |only R/visLegend.R | 24 ++ R/visNetwork.R | 24 ++ R/visNodes.R | 1 R/visOptions.R | 8 R/visPhysics.R | 8 R/visSave.R |only R/visSetData.R |only R/visStabilize.R |only README.md | 10 - inst/doc/Introduction-to-visNetwork.html | 98 +++++----- inst/doc/network/edges.html | 7 inst/doc/network/index.html | 8 inst/doc/network/nodes.html | 7 inst/htmlwidgets/lib/export |only inst/htmlwidgets/lib/vis/vis.map | 2 inst/htmlwidgets/lib/vis/vis.min.css | 2 inst/htmlwidgets/lib/vis/vis.min.js | 44 ++-- inst/htmlwidgets/visNetwork.js | 302 +++++++++++++++++++++++++++---- inst/htmlwidgets/visNetwork.yaml | 2 inst/shiny/src/server/options_server.R | 1 man/visEdges.Rd | 1 man/visExport.Rd |only man/visFit.Rd | 2 man/visFocus.Rd | 2 man/visGetPositions.Rd |only man/visIgraphLayout.Rd |only man/visLegend.Rd | 14 + man/visNetwork-igraph.Rd |only man/visNetwork.Rd | 24 ++ man/visNodes.Rd | 1 man/visPhysics.Rd | 4 man/visSave.Rd |only man/visSetData.Rd |only man/visStabilize.Rd |only man/visStartSimulation.Rd |only man/visStopSimulation.Rd |only 48 files changed, 595 insertions(+), 173 deletions(-)
Title: Java Executable .jar Files for 'RKEEL'
Description: KEEL is a popular Java software for a large number of different knowledge data discovery tasks. Furthermore, 'RKEEL' is a package with a R code layer between R and KEEL, for using KEEL in R code. This package downloads and install the .jar files necessary for 'RKEEL' algorithms execution. For more information about KEEL, see <http://www.keel.es/>.
Author: Jose Moyano [aut, cre], Luciano Sanchez Ramos [aut]
Maintainer: Jose Moyano <i02momuj@uco.es>
Diff between RKEELjars versions 1.0.8 dated 2016-01-29 and 1.0.9 dated 2016-01-31
DESCRIPTION | 8 ++--- MD5 | 4 +- R/zzz.R | 90 ++++++++++++++++++++++++++++++------------------------------ 3 files changed, 51 insertions(+), 51 deletions(-)
Title: Metropolis Sampler and Supporting Functions for Estimating
Animal Movement from Archival Tags and Satellite Fixes
Description: Data handling and estimation functions for animal movement
estimation from archival or satellite tags. Helper functions are included
for making image summaries binned by time interval from Markov Chain Monte Carlo
simulations.
Author: Michael D. Sumner [aut, cre],
Simon Wotherspoon [ctb]
Maintainer: Michael D. Sumner <mdsumner@gmail.com>
Diff between tripEstimation versions 0.0-42 dated 2015-02-02 and 0.0-44 dated 2016-01-31
DESCRIPTION | 10 +++++----- MD5 | 11 ++++++----- NAMESPACE | 7 +++++++ NEWS | 10 +++++++++- R/zzz.r |only README.md | 5 +++++ man/mkLookup.Rd | 2 +- 7 files changed, 33 insertions(+), 12 deletions(-)
More information about tripEstimation at CRAN
Permanent link
Title: Code Examples to Accompany the Book "R for Dummies"
Description: Contains all the code examples in the book "R for Dummies" (1st
edition). You can view the table of contents as well as the sample code for each
chapter.
Author: Andrie de Vries [aut, cre],
Joris Meys [aut]
Maintainer: Andrie de Vries <apdevries@gmail.com>
Diff between rfordummies versions 0.1.1 dated 2015-04-24 and 0.1.2 dated 2016-01-31
rfordummies-0.1.1/rfordummies/inst/scripts/1-orig/ch01.r |only rfordummies-0.1.1/rfordummies/inst/scripts/1-orig/ch02.r |only rfordummies-0.1.1/rfordummies/inst/scripts/1-orig/ch03.r |only rfordummies-0.1.1/rfordummies/inst/scripts/1-orig/ch04.r |only rfordummies-0.1.1/rfordummies/inst/scripts/1-orig/ch05.r |only rfordummies-0.1.1/rfordummies/inst/scripts/1-orig/ch06.r |only rfordummies-0.1.1/rfordummies/inst/scripts/1-orig/ch07.r |only rfordummies-0.1.1/rfordummies/inst/scripts/1-orig/ch08.r |only rfordummies-0.1.1/rfordummies/inst/scripts/1-orig/ch09.r |only rfordummies-0.1.1/rfordummies/inst/scripts/1-orig/ch10.r |only rfordummies-0.1.1/rfordummies/inst/scripts/1-orig/ch11.r |only rfordummies-0.1.1/rfordummies/inst/scripts/1-orig/ch12.r |only rfordummies-0.1.1/rfordummies/inst/scripts/1-orig/ch13.r |only rfordummies-0.1.1/rfordummies/inst/scripts/1-orig/ch14.r |only rfordummies-0.1.1/rfordummies/inst/scripts/1-orig/ch15.r |only rfordummies-0.1.1/rfordummies/inst/scripts/1-orig/ch16.r |only rfordummies-0.1.1/rfordummies/inst/scripts/1-orig/ch17.r |only rfordummies-0.1.1/rfordummies/inst/scripts/1-orig/ch18.r |only rfordummies-0.1.1/rfordummies/inst/scripts/1-orig/ch19.r |only rfordummies-0.1.1/rfordummies/inst/scripts/1-orig/ch20.r |only rfordummies-0.1.1/rfordummies/inst/scripts/2-clean/ch01.r |only rfordummies-0.1.1/rfordummies/inst/scripts/2-clean/ch02.r |only rfordummies-0.1.1/rfordummies/inst/scripts/2-clean/ch03.r |only rfordummies-0.1.1/rfordummies/inst/scripts/2-clean/ch04.r |only rfordummies-0.1.1/rfordummies/inst/scripts/2-clean/ch05.r |only rfordummies-0.1.1/rfordummies/inst/scripts/2-clean/ch06.r |only rfordummies-0.1.1/rfordummies/inst/scripts/2-clean/ch07.r |only rfordummies-0.1.1/rfordummies/inst/scripts/2-clean/ch08.r |only rfordummies-0.1.1/rfordummies/inst/scripts/2-clean/ch09.r |only rfordummies-0.1.1/rfordummies/inst/scripts/2-clean/ch10.r |only rfordummies-0.1.1/rfordummies/inst/scripts/2-clean/ch11.r |only rfordummies-0.1.1/rfordummies/inst/scripts/2-clean/ch12.r |only rfordummies-0.1.1/rfordummies/inst/scripts/2-clean/ch13.r |only rfordummies-0.1.1/rfordummies/inst/scripts/2-clean/ch14.r |only rfordummies-0.1.1/rfordummies/inst/scripts/2-clean/ch15.r |only rfordummies-0.1.1/rfordummies/inst/scripts/2-clean/ch16.r |only rfordummies-0.1.1/rfordummies/inst/scripts/2-clean/ch17.r |only rfordummies-0.1.1/rfordummies/inst/scripts/2-clean/ch18.r |only rfordummies-0.1.1/rfordummies/inst/scripts/2-clean/ch19.r |only rfordummies-0.1.1/rfordummies/inst/scripts/2-clean/ch20.r |only rfordummies-0.1.2/rfordummies/DESCRIPTION | 14 - rfordummies-0.1.2/rfordummies/MD5 | 140 +++++++------- rfordummies-0.1.2/rfordummies/NAMESPACE | 4 rfordummies-0.1.2/rfordummies/R/chapters-auto.R | 98 ++++----- rfordummies-0.1.2/rfordummies/R/chapters.R | 23 -- rfordummies-0.1.2/rfordummies/R/rfordummies-package.r | 1 rfordummies-0.1.2/rfordummies/inst/cleanscripts.R | 4 rfordummies-0.1.2/rfordummies/inst/scripts/1-orig/ch01.R |only rfordummies-0.1.2/rfordummies/inst/scripts/1-orig/ch02.R |only rfordummies-0.1.2/rfordummies/inst/scripts/1-orig/ch03.R |only rfordummies-0.1.2/rfordummies/inst/scripts/1-orig/ch04.R |only rfordummies-0.1.2/rfordummies/inst/scripts/1-orig/ch05.R |only rfordummies-0.1.2/rfordummies/inst/scripts/1-orig/ch06.R |only rfordummies-0.1.2/rfordummies/inst/scripts/1-orig/ch07.R |only rfordummies-0.1.2/rfordummies/inst/scripts/1-orig/ch08.R |only rfordummies-0.1.2/rfordummies/inst/scripts/1-orig/ch09.R |only rfordummies-0.1.2/rfordummies/inst/scripts/1-orig/ch10.R |only rfordummies-0.1.2/rfordummies/inst/scripts/1-orig/ch11.R |only rfordummies-0.1.2/rfordummies/inst/scripts/1-orig/ch12.R |only rfordummies-0.1.2/rfordummies/inst/scripts/1-orig/ch13.R |only rfordummies-0.1.2/rfordummies/inst/scripts/1-orig/ch14.R |only rfordummies-0.1.2/rfordummies/inst/scripts/1-orig/ch15.R |only rfordummies-0.1.2/rfordummies/inst/scripts/1-orig/ch16.R |only rfordummies-0.1.2/rfordummies/inst/scripts/1-orig/ch17.R |only rfordummies-0.1.2/rfordummies/inst/scripts/1-orig/ch18.R |only rfordummies-0.1.2/rfordummies/inst/scripts/1-orig/ch19.R |only rfordummies-0.1.2/rfordummies/inst/scripts/1-orig/ch20.R |only rfordummies-0.1.2/rfordummies/inst/scripts/2-clean/ch01.R |only rfordummies-0.1.2/rfordummies/inst/scripts/2-clean/ch02.R |only rfordummies-0.1.2/rfordummies/inst/scripts/2-clean/ch03.R |only rfordummies-0.1.2/rfordummies/inst/scripts/2-clean/ch04.R |only rfordummies-0.1.2/rfordummies/inst/scripts/2-clean/ch05.R |only rfordummies-0.1.2/rfordummies/inst/scripts/2-clean/ch06.R |only rfordummies-0.1.2/rfordummies/inst/scripts/2-clean/ch07.R |only rfordummies-0.1.2/rfordummies/inst/scripts/2-clean/ch08.R |only rfordummies-0.1.2/rfordummies/inst/scripts/2-clean/ch09.R |only rfordummies-0.1.2/rfordummies/inst/scripts/2-clean/ch10.R |only rfordummies-0.1.2/rfordummies/inst/scripts/2-clean/ch11.R |only rfordummies-0.1.2/rfordummies/inst/scripts/2-clean/ch12.R |only rfordummies-0.1.2/rfordummies/inst/scripts/2-clean/ch13.R |only rfordummies-0.1.2/rfordummies/inst/scripts/2-clean/ch14.R |only rfordummies-0.1.2/rfordummies/inst/scripts/2-clean/ch15.R |only rfordummies-0.1.2/rfordummies/inst/scripts/2-clean/ch16.R |only rfordummies-0.1.2/rfordummies/inst/scripts/2-clean/ch17.R |only rfordummies-0.1.2/rfordummies/inst/scripts/2-clean/ch18.R |only rfordummies-0.1.2/rfordummies/inst/scripts/2-clean/ch19.R |only rfordummies-0.1.2/rfordummies/inst/scripts/2-clean/ch20.R |only rfordummies-0.1.2/rfordummies/man/ch01.Rd | 28 +- rfordummies-0.1.2/rfordummies/man/ch02.Rd | 28 +- rfordummies-0.1.2/rfordummies/man/ch03.Rd | 28 +- rfordummies-0.1.2/rfordummies/man/ch04.Rd | 28 +- rfordummies-0.1.2/rfordummies/man/ch05.Rd | 28 +- rfordummies-0.1.2/rfordummies/man/ch06.Rd | 28 +- rfordummies-0.1.2/rfordummies/man/ch07.Rd | 28 +- rfordummies-0.1.2/rfordummies/man/ch08.Rd | 28 +- rfordummies-0.1.2/rfordummies/man/ch09.Rd | 28 +- rfordummies-0.1.2/rfordummies/man/ch10.Rd | 29 +- rfordummies-0.1.2/rfordummies/man/ch11.Rd | 29 +- rfordummies-0.1.2/rfordummies/man/ch12.Rd | 29 +- rfordummies-0.1.2/rfordummies/man/ch13.Rd | 33 +-- rfordummies-0.1.2/rfordummies/man/ch14.Rd | 29 +- rfordummies-0.1.2/rfordummies/man/ch15.Rd | 29 +- rfordummies-0.1.2/rfordummies/man/ch16.Rd | 29 +- rfordummies-0.1.2/rfordummies/man/ch17.Rd | 29 +- rfordummies-0.1.2/rfordummies/man/ch18.Rd | 35 +-- rfordummies-0.1.2/rfordummies/man/ch19.Rd | 29 +- rfordummies-0.1.2/rfordummies/man/ch20.Rd | 29 +- rfordummies-0.1.2/rfordummies/man/elements.Rd | 4 rfordummies-0.1.2/rfordummies/man/rfordummies.Rd | 2 rfordummies-0.1.2/rfordummies/man/saveElements.Rd | 3 rfordummies-0.1.2/rfordummies/man/toc.Rd | 2 111 files changed, 339 insertions(+), 537 deletions(-)
Title: Nonparametric Regression
Description:
Tools are provided for
(1) nonparametric regression (kernel, local linear),
(2) semiparametric regression (single index, additive models), and
(3) quantile regression (linear, kernel).
Author: Jussi Klemela <jussi.klemela@gmail.com>
Maintainer: Jussi Klemela <jussi.klemela@gmail.com>
Diff between regpro versions 0.1.0 dated 2013-10-16 and 0.1.1 dated 2016-01-31
DESCRIPTION | 20 +++++++++--------- MD5 | 50 +++++++++++++++++++++++----------------------- NAMESPACE | 7 ++++++ man/additive.Rd | 6 ++--- man/additive.stage.Rd | 2 - man/copula.trans.Rd | 4 +-- man/emp.distribu.Rd | 2 - man/emp.quantile.Rd | 2 - man/kernesti.der.Rd | 2 - man/kernesti.quantile.Rd | 2 - man/kernesti.regr.Rd | 2 - man/linear.Rd | 2 - man/linear.quan.Rd | 2 - man/loclin.Rd | 2 - man/ma.Rd | 2 - man/pcf.additive.Rd | 2 - man/pcf.kern.quan.Rd | 2 - man/pcf.kernesti.Rd | 2 - man/pcf.kernesti.der.Rd | 2 - man/pcf.kernesti.marg.Rd | 2 - man/pcf.kernesti.slice.Rd | 2 - man/pcf.loclin.Rd | 2 - man/pcf.single.index.Rd | 2 - man/pp.regression.Rd | 2 - man/quantil.emp.Rd | 2 - man/single.index.Rd | 2 - 26 files changed, 68 insertions(+), 61 deletions(-)
Title: Data Analysis in Ecology
Description: Miscellaneous functions for data analysis in ecology, with special emphasis on spatial data.
Author: Patrick Giraudoux <patrick.giraudoux@univ-fcomte.fr>
Maintainer: Patrick Giraudoux <patrick.giraudoux@univ-fcomte.fr>
Diff between pgirmess versions 1.6.3 dated 2015-11-04 and 1.6.4 dated 2016-01-31
pgirmess-1.6.3/pgirmess/man/QGIS2sp.Rd |only pgirmess-1.6.3/pgirmess/man/classnum.Rd |only pgirmess-1.6.3/pgirmess/man/cormat.Rd |only pgirmess-1.6.3/pgirmess/man/correlog.Rd |only pgirmess-1.6.3/pgirmess/man/diag2edge.Rd |only pgirmess-1.6.3/pgirmess/man/difshannonbio.Rd |only pgirmess-1.6.3/pgirmess/man/pairsrp.Rd |only pgirmess-1.6.3/pgirmess/man/pave.Rd |only pgirmess-1.6.3/pgirmess/man/pclig.Rd |only pgirmess-1.6.3/pgirmess/man/piankabio.Rd |only pgirmess-1.6.3/pgirmess/man/piankabioboot.Rd |only pgirmess-1.6.3/pgirmess/man/polycirc.Rd |only pgirmess-1.6.3/pgirmess/man/polycirc2.Rd |only pgirmess-1.6.3/pgirmess/man/postxt.Rd |only pgirmess-1.6.3/pgirmess/man/preybiom.Rd |only pgirmess-1.6.3/pgirmess/man/print.mc.Rd |only pgirmess-1.6.3/pgirmess/man/selMod.Rd |only pgirmess-1.6.3/pgirmess/man/shannon.Rd |only pgirmess-1.6.3/pgirmess/man/shannonbio.Rd |only pgirmess-1.6.3/pgirmess/man/shannonbioboot.Rd |only pgirmess-1.6.3/pgirmess/man/siegelp179.Rd |only pgirmess-1.6.3/pgirmess/man/tabcont2categ.Rd |only pgirmess-1.6.3/pgirmess/man/val4symb.Rd |only pgirmess-1.6.3/pgirmess/man/valchisq.Rd |only pgirmess-1.6.3/pgirmess/man/write.delim.Rd |only pgirmess-1.6.4/pgirmess/DESCRIPTION | 8 +-- pgirmess-1.6.4/pgirmess/MD5 | 56 +++++++++++++------------- pgirmess-1.6.4/pgirmess/data/preybiom.rda |binary pgirmess-1.6.4/pgirmess/data/siegelp179.rda |binary pgirmess-1.6.4/pgirmess/man/QGIS2sp.rd |only pgirmess-1.6.4/pgirmess/man/classnum.rd |only pgirmess-1.6.4/pgirmess/man/cormat.rd |only pgirmess-1.6.4/pgirmess/man/correlog.rd |only pgirmess-1.6.4/pgirmess/man/diag2edge.rd |only pgirmess-1.6.4/pgirmess/man/difshannonbio.rd |only pgirmess-1.6.4/pgirmess/man/pairsrp.rd |only pgirmess-1.6.4/pgirmess/man/pave.rd |only pgirmess-1.6.4/pgirmess/man/pclig.rd |only pgirmess-1.6.4/pgirmess/man/piankabio.rd |only pgirmess-1.6.4/pgirmess/man/piankabioboot.rd |only pgirmess-1.6.4/pgirmess/man/polycirc.rd |only pgirmess-1.6.4/pgirmess/man/polycirc2.rd |only pgirmess-1.6.4/pgirmess/man/postxt.rd |only pgirmess-1.6.4/pgirmess/man/preybiom.rd |only pgirmess-1.6.4/pgirmess/man/print.mc.rd |only pgirmess-1.6.4/pgirmess/man/selMod.rd |only pgirmess-1.6.4/pgirmess/man/shannon.rd |only pgirmess-1.6.4/pgirmess/man/shannonbio.rd |only pgirmess-1.6.4/pgirmess/man/shannonbioboot.rd |only pgirmess-1.6.4/pgirmess/man/siegelp179.rd |only pgirmess-1.6.4/pgirmess/man/tabcont2categ.rd |only pgirmess-1.6.4/pgirmess/man/val4symb.rd |only pgirmess-1.6.4/pgirmess/man/valchisq.rd |only pgirmess-1.6.4/pgirmess/man/write.delim.rd |only 54 files changed, 32 insertions(+), 32 deletions(-)
Title: Kalman Filter and Smoother for Exponential Family State Space
Models
Description: Functions for Kalman filtering, smoothing,
forecasting and simulation of multivariate exponential family state space
models with exact diffuse initialization and sequential processing.
Author: Jouni Helske <jouni.helske@jyu.fi>
Maintainer: Jouni Helske <jouni.helske@jyu.fi>
Diff between KFAS versions 1.1.2 dated 2015-06-26 and 1.2.0 dated 2016-01-31
KFAS-1.1.2/KFAS/R/deviance.KFS.R |only KFAS-1.1.2/KFAS/R/subset.SSModel.R |only KFAS-1.1.2/KFAS/man/coef.KFS.Rd |only KFAS-1.1.2/KFAS/man/deviance.KFS.Rd |only KFAS-1.1.2/KFAS/man/fitted.KFS.Rd |only KFAS-1.2.0/KFAS/ChangeLog | 314 +-- KFAS-1.2.0/KFAS/DESCRIPTION | 9 KFAS-1.2.0/KFAS/MD5 | 171 - KFAS-1.2.0/KFAS/NAMESPACE | 114 - KFAS-1.2.0/KFAS/R/KFAS-defunct.R |only KFAS-1.2.0/KFAS/R/KFAS-package.R | 1190 +++++++----- KFAS-1.2.0/KFAS/R/KFS.R | 1129 ++++++----- KFAS-1.2.0/KFAS/R/SSMarima.R | 138 - KFAS-1.2.0/KFAS/R/SSMcustom.R | 155 - KFAS-1.2.0/KFAS/R/SSMcycle.R | 177 - KFAS-1.2.0/KFAS/R/SSModel.R | 717 +++---- KFAS-1.2.0/KFAS/R/SSMregression.R | 363 +-- KFAS-1.2.0/KFAS/R/SSMseasonal.R | 259 +- KFAS-1.2.0/KFAS/R/SSMtrend.R | 187 - KFAS-1.2.0/KFAS/R/approxSSM.R | 266 +- KFAS-1.2.0/KFAS/R/artransform.R | 34 KFAS-1.2.0/KFAS/R/checkModel.R | 263 +- KFAS-1.2.0/KFAS/R/coef.KFS.R | 160 + KFAS-1.2.0/KFAS/R/extract.SSModel.R | 502 ++--- KFAS-1.2.0/KFAS/R/fitSSM.R | 323 ++- KFAS-1.2.0/KFAS/R/fitted.KFS.R | 75 KFAS-1.2.0/KFAS/R/hatvalues.KFS.R | 94 KFAS-1.2.0/KFAS/R/importanceSSM.R | 284 +- KFAS-1.2.0/KFAS/R/initTheta.R | 52 KFAS-1.2.0/KFAS/R/interval.R | 179 - KFAS-1.2.0/KFAS/R/logLik.SSModel.R | 308 +-- KFAS-1.2.0/KFAS/R/mvInnovations.R | 54 KFAS-1.2.0/KFAS/R/plot.SSModel.R |only KFAS-1.2.0/KFAS/R/predict.SSModel.R | 647 +++--- KFAS-1.2.0/KFAS/R/print.objects.R | 181 - KFAS-1.2.0/KFAS/R/residuals.KFS.R | 223 +- KFAS-1.2.0/KFAS/R/rstandard.KFS.R | 157 - KFAS-1.2.0/KFAS/R/signals.R | 191 +- KFAS-1.2.0/KFAS/R/simHelper.R | 93 KFAS-1.2.0/KFAS/R/simulateSSM.R | 202 +- KFAS-1.2.0/KFAS/R/transformSSM.R | 314 +-- KFAS-1.2.0/KFAS/build/vignette.rds |binary KFAS-1.2.0/KFAS/inst/doc/KFAS.R | 323 ++- KFAS-1.2.0/KFAS/inst/doc/KFAS.Rnw | 1992 +++++++++++---------- KFAS-1.2.0/KFAS/inst/doc/KFAS.pdf |binary KFAS-1.2.0/KFAS/man/Extract.SSModel.Rd | 163 - KFAS-1.2.0/KFAS/man/GlobalTemp.Rd | 44 KFAS-1.2.0/KFAS/man/KFAS-defunct.Rd |only KFAS-1.2.0/KFAS/man/KFAS.Rd | 1002 +++++----- KFAS-1.2.0/KFAS/man/KFS.Rd | 191 +- KFAS-1.2.0/KFAS/man/SSModel.Rd | 428 ++-- KFAS-1.2.0/KFAS/man/alcohol.Rd | 34 KFAS-1.2.0/KFAS/man/approxSSM.Rd | 182 + KFAS-1.2.0/KFAS/man/artransform.Rd | 55 KFAS-1.2.0/KFAS/man/boat.Rd | 93 KFAS-1.2.0/KFAS/man/checkModel.Rd | 85 KFAS-1.2.0/KFAS/man/coef.SSModel.Rd |only KFAS-1.2.0/KFAS/man/fitSSM.Rd | 218 +- KFAS-1.2.0/KFAS/man/fitted.SSModel.Rd |only KFAS-1.2.0/KFAS/man/hatvalues.KFS.Rd | 77 KFAS-1.2.0/KFAS/man/importanceSSM.Rd | 180 - KFAS-1.2.0/KFAS/man/ldl.Rd | 64 KFAS-1.2.0/KFAS/man/logLik.SSModel.Rd | 162 - KFAS-1.2.0/KFAS/man/mvInnovations.Rd | 6 KFAS-1.2.0/KFAS/man/plot.SSModel.Rd |only KFAS-1.2.0/KFAS/man/predict.SSModel.Rd | 28 KFAS-1.2.0/KFAS/man/print.KFS.Rd | 46 KFAS-1.2.0/KFAS/man/print.SSModel.Rd | 34 KFAS-1.2.0/KFAS/man/residuals.KFS.Rd | 4 KFAS-1.2.0/KFAS/man/rstandard.KFS.Rd | 25 KFAS-1.2.0/KFAS/man/sexratio.Rd | 68 KFAS-1.2.0/KFAS/man/signal.Rd | 89 KFAS-1.2.0/KFAS/man/simulateSSM.Rd | 106 - KFAS-1.2.0/KFAS/man/transformSSM.Rd | 40 KFAS-1.2.0/KFAS/src/approx.f95 | 306 +-- KFAS-1.2.0/KFAS/src/filter1step.f95 | 250 +- KFAS-1.2.0/KFAS/src/filter1stepnovar.f95 | 158 - KFAS-1.2.0/KFAS/src/gloglik.f95 | 186 - KFAS-1.2.0/KFAS/src/kfilter.f95 | 182 - KFAS-1.2.0/KFAS/src/kfstheta.f95 | 250 +- KFAS-1.2.0/KFAS/src/ptheta.f95 | 254 +- KFAS-1.2.0/KFAS/src/simgaussian.f95 | 545 ++--- KFAS-1.2.0/KFAS/src/smoothsim.f95 | 206 +- KFAS-1.2.0/KFAS/tests/testthat/testArima.R | 167 - KFAS-1.2.0/KFAS/tests/testthat/testBasics.R | 54 KFAS-1.2.0/KFAS/tests/testthat/testGLM.R | 642 +++--- KFAS-1.2.0/KFAS/tests/testthat/testImportanceSSM.R | 60 KFAS-1.2.0/KFAS/tests/testthat/testNumerical.R | 107 - KFAS-1.2.0/KFAS/tests/testthat/testSimulateSSM.R | 88 KFAS-1.2.0/KFAS/tests/testthat/testStruct.R | 44 KFAS-1.2.0/KFAS/vignettes/KFAS.Rnw | 1992 +++++++++++---------- KFAS-1.2.0/KFAS/vignettes/KFAS.bib | 703 ++++--- 92 files changed, 11569 insertions(+), 9889 deletions(-)
Title: Advanced Forest Plot Using 'grid' Graphics
Description: A forest plot that allows for
multiple confidence intervals per row,
custom fonts for each text element,
custom confidence intervals,
text mixed with expressions, and more.
The aim is to extend the use of forest plots beyond meta-analyses.
This is a more general version of the original 'rmeta' package's forestplot
function and relies heavily on the 'grid' package.
Author: Max Gordon [aut, cre],
Thomas Lumley [aut, ctb]
Maintainer: Max Gordon <max@gforge.se>
Diff between forestplot versions 1.3 dated 2015-11-16 and 1.4 dated 2016-01-31
forestplot-1.3/forestplot/tests/visual_tests |only forestplot-1.4/forestplot/DESCRIPTION | 10 forestplot-1.4/forestplot/MD5 | 101 + forestplot-1.4/forestplot/NAMESPACE | 35 forestplot-1.4/forestplot/NEWS | 7 forestplot-1.4/forestplot/R/forestplot.R | 10 forestplot-1.4/forestplot/R/forestplot_helpers.R | 10 forestplot-1.4/forestplot/build/vignette.rds |binary forestplot-1.4/forestplot/inst/doc/forestplot.html | 4 forestplot-1.4/forestplot/man/HRQoL.Rd | 32 forestplot-1.4/forestplot/man/forestplot-package.Rd | 70 - forestplot-1.4/forestplot/man/forestplot.Rd | 660 ++++++------- forestplot-1.4/forestplot/man/fpColors.Rd | 164 +-- forestplot-1.4/forestplot/man/fpDrawCI.Rd | 362 +++---- forestplot-1.4/forestplot/man/fpLegend.Rd | 98 - forestplot-1.4/forestplot/man/fpTxtGp.Rd | 100 - forestplot-1.4/forestplot/man/getTicks.Rd | 122 +- forestplot-1.4/forestplot/man/heightDetails.xaxis.Rd | 52 - forestplot-1.4/forestplot/man/prFpConvertMultidimArray.Rd | 38 forestplot-1.4/forestplot/man/prFpDrawLegend.Rd | 104 +- forestplot-1.4/forestplot/man/prFpDrawLine.Rd | 104 +- forestplot-1.4/forestplot/man/prFpDrawLines.Rd | 50 forestplot-1.4/forestplot/man/prFpFetchRowLabel.Rd | 70 - forestplot-1.4/forestplot/man/prFpFindWidestGrob.Rd | 44 forestplot-1.4/forestplot/man/prFpGetConfintFnList.Rd | 64 - forestplot-1.4/forestplot/man/prFpGetGraphTicksAndClips.Rd | 132 +- forestplot-1.4/forestplot/man/prFpGetLabels.Rd | 96 - forestplot-1.4/forestplot/man/prFpGetLayoutVP.Rd | 66 - forestplot-1.4/forestplot/man/prFpGetLegendBoxPosition.Rd | 58 - forestplot-1.4/forestplot/man/prFpGetLegendGrobs.Rd | 56 - forestplot-1.4/forestplot/man/prFpGetLines.Rd | 52 - forestplot-1.4/forestplot/man/prFpPrepareLegendMarker.Rd | 46 forestplot-1.4/forestplot/man/prFpPrintLabels.Rd | 56 - forestplot-1.4/forestplot/man/prFpPrintXaxis.Rd | 50 forestplot-1.4/forestplot/man/prFpValidateLabelList.Rd | 40 forestplot-1.4/forestplot/man/prFpXrange.Rd | 90 - forestplot-1.4/forestplot/man/prGetTextGrobCex.Rd | 38 forestplot-1.4/forestplot/man/prGparMerge.Rd | 42 forestplot-1.4/forestplot/man/prGridPlotTitle.Rd | 44 forestplot-1.4/forestplot/man/prListRep.Rd | 46 forestplot-1.4/forestplot/man/prPopulateList.Rd | 62 - forestplot-1.4/forestplot/man/prPushMarginViewport.Rd | 58 - forestplot-1.4/forestplot/tests/forestplot2_vtests.R |only forestplot-1.4/forestplot/tests/vtest_from_vignette.R |only forestplot-1.4/forestplot/vignettes/forestplot_files |only 45 files changed, 1690 insertions(+), 1653 deletions(-)
Title: Interface for the 'Box.com API'
Description: An R interface for the remote file hosting service 'Box' (https://
www.box.com/). In addition to uploading and downloading files, this package
includes functions which mirror base R operations for local files, (e.g.
box_load(), box_save(), box_read(), box_setwd(), etc.), as well as 'git'
style functions for entire directories (e.g. box_fetch(), box_push()).
Author: Brendan Rocks [aut, cre]
Maintainer: Brendan Rocks <rocks.brendan@gmail.com>
Diff between boxr versions 0.3.1 dated 2016-01-04 and 0.3.2 dated 2016-01-31
boxr-0.3.1/boxr/R/boxr__internal_progress.R |only boxr-0.3.2/boxr/DESCRIPTION | 12 +-- boxr-0.3.2/boxr/LICENSE | 2 boxr-0.3.2/boxr/MD5 | 25 +++---- boxr-0.3.2/boxr/NEWS.md | 9 ++ boxr-0.3.2/boxr/R/boxr__internal_diff_and_delete.R | 4 - boxr-0.3.2/boxr/R/boxr__internal_diff_and_uldl.R | 4 - boxr-0.3.2/boxr/R/boxr__internal_get.R | 6 - boxr-0.3.2/boxr/R/boxr__internal_update_upload.R | 4 - boxr-0.3.2/boxr/R/boxr_auth.R | 2 boxr-0.3.2/boxr/R/boxr_delete_restore.R | 8 +- boxr-0.3.2/boxr/R/boxr_s3_classes.R | 22 +++---- boxr-0.3.2/boxr/R/boxr_upload_download.R | 4 - boxr-0.3.2/boxr/inst/doc/boxr.html | 66 +++++++++++++-------- 14 files changed, 96 insertions(+), 72 deletions(-)
Title: Calculations for All Common Subsequences
Description: Implements several string comparison algorithms, including calACS
(count all common subsequences), lenACS (calculate the lengths of all common subsequences), and lenLCS
(calculate the length of the longest common subsequence).
Some algorithms differentiate between the more strict
definition of subsequence, where a common subsequence cannot be separated
by any other items, from its looser counterpart, where a common subsequence
can be interrupted by other items. This difference is shown in the suffix of the algorithm (-Strict vs -Loose).
For example, q-w is a common subsequence
of q-w-e-r and q-e-w-r on the looser definition, but not on the more strict
definition. calACSLoose Algorithm from Wang, H. All common subsequences
(2007) IJCAI International Joint Conference on Artificial Intelligence, pp. 635-640.
Author: Alan Gu
Maintainer: Alan Gu <alan.on.ca@gmail.com>
Diff between calACS versions 1.2 dated 2015-12-16 and 2.2.1 dated 2016-01-31
calACS-1.2/calACS/R/calACS.R |only calACS-1.2/calACS/R/calACSstr.R |only calACS-2.2.1/calACS/DESCRIPTION | 23 +++++---- calACS-2.2.1/calACS/MD5 | 38 ++++++++++------ calACS-2.2.1/calACS/NAMESPACE | 5 +- calACS-2.2.1/calACS/R/GeneratePossibleSubsequences.r | 19 ++++++-- calACS-2.2.1/calACS/R/calACSLoose.r | 4 - calACS-2.2.1/calACS/R/calACSStrict.R |only calACS-2.2.1/calACS/R/calACSstrLoose.r | 7 -- calACS-2.2.1/calACS/R/calACSstrStrict.R |only calACS-2.2.1/calACS/R/is.subvector.r | 1 calACS-2.2.1/calACS/R/lenACSStrict.r |only calACS-2.2.1/calACS/R/lenACSstrStrict.r |only calACS-2.2.1/calACS/R/lenLCSStrict.r |only calACS-2.2.1/calACS/R/lenLCSstrStrict.r |only calACS-2.2.1/calACS/R/longestVec.r |only calACS-2.2.1/calACS/man/GeneratePossibleSubsequences.Rd | 8 ++- calACS-2.2.1/calACS/man/calACSLoose.Rd | 8 +-- calACS-2.2.1/calACS/man/calACSStrict.Rd | 19 +++++--- calACS-2.2.1/calACS/man/calACSstrLoose.Rd | 9 +-- calACS-2.2.1/calACS/man/calACSstrStrict.Rd | 20 +++++--- calACS-2.2.1/calACS/man/is.subvector.Rd | 4 + calACS-2.2.1/calACS/man/lenACSStrict.Rd |only calACS-2.2.1/calACS/man/lenACSstrStrict.Rd |only calACS-2.2.1/calACS/man/lenLCSStrict.Rd |only calACS-2.2.1/calACS/man/lenLCSstrStrict.Rd |only calACS-2.2.1/calACS/man/longestVec.Rd |only 27 files changed, 100 insertions(+), 65 deletions(-)