Title: Tools for Reading SDMX Data and Metadata
Description: Set of classes and methods to read data and metadata documents
exchanged through the Statistical Data and Metadata Exchange (SDMX) framework,
currently focusing on the SDMX XML standard format (SDMX-ML).
Author: Emmanuel Blondel [aut, cre],
Matthieu Stigler [ctb]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between rsdmx versions 0.5-0 dated 2015-10-06 and 0.5-1 dated 2016-02-02
rsdmx-0.5-0/rsdmx/man/SDMX-class.Rd |only rsdmx-0.5-0/rsdmx/man/SDMXAttribute-class.Rd |only rsdmx-0.5-0/rsdmx/man/SDMXCode-class.Rd |only rsdmx-0.5-0/rsdmx/man/SDMXCodelist-class.Rd |only rsdmx-0.5-0/rsdmx/man/SDMXCodelists-class.Rd |only rsdmx-0.5-0/rsdmx/man/SDMXCompactData-class.Rd |only rsdmx-0.5-0/rsdmx/man/SDMXComponents-class.Rd |only rsdmx-0.5-0/rsdmx/man/SDMXConcept-class.Rd |only rsdmx-0.5-0/rsdmx/man/SDMXConceptScheme-class.Rd |only rsdmx-0.5-0/rsdmx/man/SDMXConcepts-class.Rd |only rsdmx-0.5-0/rsdmx/man/SDMXDataStructure-class.Rd |only rsdmx-0.5-0/rsdmx/man/SDMXDataStructureDefinition-class.Rd |only rsdmx-0.5-0/rsdmx/man/SDMXDataStructures-class.Rd |only rsdmx-0.5-0/rsdmx/man/SDMXDimension-class.Rd |only rsdmx-0.5-0/rsdmx/man/SDMXFooter-class.Rd |only rsdmx-0.5-0/rsdmx/man/SDMXFooterMessage-class.Rd |only rsdmx-0.5-0/rsdmx/man/SDMXGenericData-class.Rd |only rsdmx-0.5-0/rsdmx/man/SDMXHeader-class.Rd |only rsdmx-0.5-0/rsdmx/man/SDMXMessageGroup-class.Rd |only rsdmx-0.5-0/rsdmx/man/SDMXPrimaryMeasure-class.Rd |only rsdmx-0.5-0/rsdmx/man/SDMXRESTRequestBuilder-class.Rd |only rsdmx-0.5-0/rsdmx/man/SDMXRequestBuilder-class.Rd |only rsdmx-0.5-0/rsdmx/man/SDMXSchema-class.Rd |only rsdmx-0.5-0/rsdmx/man/SDMXServiceProvider-class.Rd |only rsdmx-0.5-0/rsdmx/man/SDMXStructureSpecificData-class.Rd |only rsdmx-0.5-0/rsdmx/man/SDMXStructureType-class.Rd |only rsdmx-0.5-0/rsdmx/man/SDMXTimeDimension-class.Rd |only rsdmx-0.5-0/rsdmx/man/SDMXType-class.Rd |only rsdmx-0.5-0/rsdmx/man/SDMXUtilityData-class.Rd |only rsdmx-0.5-0/rsdmx/man/as.XML-methods.Rd |only rsdmx-0.5-0/rsdmx/man/attributes.SDMXComponents.Rd |only rsdmx-0.5-0/rsdmx/man/class.SDMXMessageGroup.Rd |only rsdmx-0.5-0/rsdmx/man/codelists.SDMXCodelists.Rd |only rsdmx-0.5-0/rsdmx/man/conceptSchemes.SDMXConcepts.Rd |only rsdmx-0.5-0/rsdmx/man/concepts.SDMXConcepts.Rd |only rsdmx-0.5-0/rsdmx/man/datastructures.SDMXDataStructures.Rd |only rsdmx-0.5-0/rsdmx/man/dimensions.SDMXComponents.Rd |only rsdmx-0.5-0/rsdmx/man/getNamespaces-methods.Rd |only rsdmx-0.5-0/rsdmx/man/getSDMXFooter-methods.Rd |only rsdmx-0.5-0/rsdmx/man/getSDMXHeader-methods.Rd |only rsdmx-0.5-0/rsdmx/man/getSDMXSchema-methods.Rd |only rsdmx-0.5-0/rsdmx/man/getSDMXType-methods.Rd |only rsdmx-0.5-0/rsdmx/man/getType-methods.Rd |only rsdmx-0.5-0/rsdmx/man/getVersion-methods.Rd |only rsdmx-0.5-0/rsdmx/man/primarymeasure.SDMXComponents.Rd |only rsdmx-0.5-0/rsdmx/man/rsdmx-package.Rd |only rsdmx-0.5-0/rsdmx/man/timedimension.SDMXComponents.Rd |only rsdmx-0.5-0/rsdmx/man/type.SDMXStructureType.Rd |only rsdmx-0.5-0/rsdmx/man/type.SDMXType.Rd |only rsdmx-0.5-0/rsdmx/man/version.SDMXSchema.Rd |only rsdmx-0.5-1/rsdmx/DESCRIPTION | 39 - rsdmx-0.5-1/rsdmx/MD5 | 261 ++++----- rsdmx-0.5-1/rsdmx/NAMESPACE | 24 rsdmx-0.5-1/rsdmx/R/Class-SDMX.R | 30 + rsdmx-0.5-1/rsdmx/R/Class-SDMXAttribute.R | 39 + rsdmx-0.5-1/rsdmx/R/Class-SDMXCode.R | 25 rsdmx-0.5-1/rsdmx/R/Class-SDMXCodelist.R | 30 - rsdmx-0.5-1/rsdmx/R/Class-SDMXCodelists.R | 19 rsdmx-0.5-1/rsdmx/R/Class-SDMXCompactData.R | 13 rsdmx-0.5-1/rsdmx/R/Class-SDMXComponents.R | 22 rsdmx-0.5-1/rsdmx/R/Class-SDMXConcept.R | 31 + rsdmx-0.5-1/rsdmx/R/Class-SDMXConceptScheme.R | 31 + rsdmx-0.5-1/rsdmx/R/Class-SDMXConcepts.R | 24 rsdmx-0.5-1/rsdmx/R/Class-SDMXCrossSectionalData.R |only rsdmx-0.5-1/rsdmx/R/Class-SDMXDataFlow.R |only rsdmx-0.5-1/rsdmx/R/Class-SDMXDataFlows.R |only rsdmx-0.5-1/rsdmx/R/Class-SDMXDataStructure.R | 31 + rsdmx-0.5-1/rsdmx/R/Class-SDMXDataStructureDefinition.R | 25 rsdmx-0.5-1/rsdmx/R/Class-SDMXDataStructures.R | 21 rsdmx-0.5-1/rsdmx/R/Class-SDMXDimension.R | 37 + rsdmx-0.5-1/rsdmx/R/Class-SDMXFooter.R | 30 - rsdmx-0.5-1/rsdmx/R/Class-SDMXFooterMessage.R | 31 - rsdmx-0.5-1/rsdmx/R/Class-SDMXGenericData.R | 17 rsdmx-0.5-1/rsdmx/R/Class-SDMXHeader.R | 118 ++-- rsdmx-0.5-1/rsdmx/R/Class-SDMXMessageGroup.R | 17 rsdmx-0.5-1/rsdmx/R/Class-SDMXPrimaryMeasure.R | 26 rsdmx-0.5-1/rsdmx/R/Class-SDMXRESTRequestBuilder.R | 21 rsdmx-0.5-1/rsdmx/R/Class-SDMXRequestBuilder.R | 41 + rsdmx-0.5-1/rsdmx/R/Class-SDMXSchema.R | 20 rsdmx-0.5-1/rsdmx/R/Class-SDMXServiceProvider.R | 26 rsdmx-0.5-1/rsdmx/R/Class-SDMXServiceProviders.R |only rsdmx-0.5-1/rsdmx/R/Class-SDMXStructureSpecificData.R | 17 rsdmx-0.5-1/rsdmx/R/Class-SDMXStructureType.R | 18 rsdmx-0.5-1/rsdmx/R/Class-SDMXTimeDimension.R | 30 - rsdmx-0.5-1/rsdmx/R/Class-SDMXType.R | 22 rsdmx-0.5-1/rsdmx/R/Class-SDMXUtilityData.R | 17 rsdmx-0.5-1/rsdmx/R/SDMX-methods.R | 148 +++-- rsdmx-0.5-1/rsdmx/R/SDMXAttribute-methods.R | 15 rsdmx-0.5-1/rsdmx/R/SDMXCode-methods.R | 15 rsdmx-0.5-1/rsdmx/R/SDMXCodelist-methods.R | 15 rsdmx-0.5-1/rsdmx/R/SDMXCodelists-methods.R | 15 rsdmx-0.5-1/rsdmx/R/SDMXCompactData-methods.R | 37 - rsdmx-0.5-1/rsdmx/R/SDMXComponents-methods.R | 15 rsdmx-0.5-1/rsdmx/R/SDMXConcept-methods.R | 15 rsdmx-0.5-1/rsdmx/R/SDMXConceptScheme-methods.R | 15 rsdmx-0.5-1/rsdmx/R/SDMXConcepts-methods.R | 15 rsdmx-0.5-1/rsdmx/R/SDMXCrossSectionalData-methods.R |only rsdmx-0.5-1/rsdmx/R/SDMXDataFlow-methods.R |only rsdmx-0.5-1/rsdmx/R/SDMXDataFlows-methods.R |only rsdmx-0.5-1/rsdmx/R/SDMXDataStructure-methods.R | 15 rsdmx-0.5-1/rsdmx/R/SDMXDataStructureDefinition-methods.R | 15 rsdmx-0.5-1/rsdmx/R/SDMXDataStructures-methods.R | 15 rsdmx-0.5-1/rsdmx/R/SDMXDimension-methods.R | 15 rsdmx-0.5-1/rsdmx/R/SDMXFooter-methods.R | 15 rsdmx-0.5-1/rsdmx/R/SDMXFooterMessage-methods.R | 15 rsdmx-0.5-1/rsdmx/R/SDMXGenericData-methods.R | 34 - rsdmx-0.5-1/rsdmx/R/SDMXHeader-methods.R | 120 ++-- rsdmx-0.5-1/rsdmx/R/SDMXMessageGroup-methods.R | 15 rsdmx-0.5-1/rsdmx/R/SDMXPrimaryMeasure-methods.R | 15 rsdmx-0.5-1/rsdmx/R/SDMXRESTRequestBuilder-methods.R | 158 +++++ rsdmx-0.5-1/rsdmx/R/SDMXRequestBuilder-methods.R | 46 + rsdmx-0.5-1/rsdmx/R/SDMXSchema-methods.R | 23 rsdmx-0.5-1/rsdmx/R/SDMXServiceProvider-methods.R | 249 ++++++++- rsdmx-0.5-1/rsdmx/R/SDMXServiceProviders-methods.R |only rsdmx-0.5-1/rsdmx/R/SDMXStructureSpecificData-methods.R | 15 rsdmx-0.5-1/rsdmx/R/SDMXStructureType-methods.R | 34 + rsdmx-0.5-1/rsdmx/R/SDMXTimeDimension-methods.R | 15 rsdmx-0.5-1/rsdmx/R/SDMXType-methods.R | 33 - rsdmx-0.5-1/rsdmx/R/SDMXUtilityData-methods.R | 15 rsdmx-0.5-1/rsdmx/R/profile.R | 4 rsdmx-0.5-1/rsdmx/R/readSDMX.R | 177 +++++- rsdmx-0.5-1/rsdmx/R/rsdmx.R |only rsdmx-0.5-1/rsdmx/README.md | 40 - rsdmx-0.5-1/rsdmx/inst/doc/quickstart.R | 12 rsdmx-0.5-1/rsdmx/inst/doc/quickstart.Rmd | 22 rsdmx-0.5-1/rsdmx/inst/doc/quickstart.html | 54 +- rsdmx-0.5-1/rsdmx/inst/extdata/SDMXCrossSectionalDataExample_1.0.xml |only rsdmx-0.5-1/rsdmx/inst/extdata/SDMXDataFlows_Example_2.1.xml |only rsdmx-0.5-1/rsdmx/man/SDMX.Rd | 51 + rsdmx-0.5-1/rsdmx/man/SDMXAttribute.Rd |only rsdmx-0.5-1/rsdmx/man/SDMXCode.Rd |only rsdmx-0.5-1/rsdmx/man/SDMXCodelist.Rd |only rsdmx-0.5-1/rsdmx/man/SDMXCodelists.Rd |only rsdmx-0.5-1/rsdmx/man/SDMXCompactData.Rd |only rsdmx-0.5-1/rsdmx/man/SDMXComponents.Rd |only rsdmx-0.5-1/rsdmx/man/SDMXConcept.Rd |only rsdmx-0.5-1/rsdmx/man/SDMXConceptScheme.Rd |only rsdmx-0.5-1/rsdmx/man/SDMXConcepts.Rd |only rsdmx-0.5-1/rsdmx/man/SDMXCrossSectionalData.Rd |only rsdmx-0.5-1/rsdmx/man/SDMXDataFlow.Rd |only rsdmx-0.5-1/rsdmx/man/SDMXDataFlows.Rd |only rsdmx-0.5-1/rsdmx/man/SDMXDataStructure.Rd |only rsdmx-0.5-1/rsdmx/man/SDMXDataStructureDefinition.Rd |only rsdmx-0.5-1/rsdmx/man/SDMXDataStructures.Rd |only rsdmx-0.5-1/rsdmx/man/SDMXDimension.Rd |only rsdmx-0.5-1/rsdmx/man/SDMXFooter.Rd |only rsdmx-0.5-1/rsdmx/man/SDMXFooterMessage.Rd |only rsdmx-0.5-1/rsdmx/man/SDMXGenericData.Rd |only rsdmx-0.5-1/rsdmx/man/SDMXHeader.Rd |only rsdmx-0.5-1/rsdmx/man/SDMXMessageGroup.Rd |only rsdmx-0.5-1/rsdmx/man/SDMXPrimaryMeasure.Rd |only rsdmx-0.5-1/rsdmx/man/SDMXRESTRequestBuilder.Rd |only rsdmx-0.5-1/rsdmx/man/SDMXRequestBuilder.Rd |only rsdmx-0.5-1/rsdmx/man/SDMXSchema.Rd |only rsdmx-0.5-1/rsdmx/man/SDMXServiceProvider.Rd |only rsdmx-0.5-1/rsdmx/man/SDMXServiceProviders.Rd |only rsdmx-0.5-1/rsdmx/man/SDMXStructureSpecificData.Rd |only rsdmx-0.5-1/rsdmx/man/SDMXStructureType.Rd |only rsdmx-0.5-1/rsdmx/man/SDMXTimeDimension.Rd |only rsdmx-0.5-1/rsdmx/man/SDMXType.Rd |only rsdmx-0.5-1/rsdmx/man/SDMXUtilityData.Rd |only rsdmx-0.5-1/rsdmx/man/addSDMXServiceProvider.Rd | 35 - rsdmx-0.5-1/rsdmx/man/findNamespace.Rd | 40 - rsdmx-0.5-1/rsdmx/man/findSDMXServiceProvider.Rd | 35 - rsdmx-0.5-1/rsdmx/man/getNamespaces.Rd |only rsdmx-0.5-1/rsdmx/man/getSDMXServiceProviders.Rd | 29 - rsdmx-0.5-1/rsdmx/man/getSoapRequestResult.Rd | 31 - rsdmx-0.5-1/rsdmx/man/isSoapRequestEnvelope.Rd | 31 - rsdmx-0.5-1/rsdmx/man/readSDMX.Rd | 264 +++++---- rsdmx-0.5-1/rsdmx/man/rsdmx.Rd |only rsdmx-0.5-1/rsdmx/man/setSDMXServiceProviders.Rd | 24 rsdmx-0.5-1/rsdmx/tests/testthat/test_CrossSectionalData.R |only rsdmx-0.5-1/rsdmx/tests/testthat/test_DataFlows.R |only rsdmx-0.5-1/rsdmx/tests/testthat/test_Main.R | 40 - rsdmx-0.5-1/rsdmx/tests/testthat/test_Main_Helpers.R | 266 +++++++++- rsdmx-0.5-1/rsdmx/tests/testthat/test_RequestBuilder.R | 40 - rsdmx-0.5-1/rsdmx/tests/testthat/test_Schema.R | 6 rsdmx-0.5-1/rsdmx/tests/testthat/test_ServiceProvider.R | 47 + rsdmx-0.5-1/rsdmx/tests/testthat/test_Type.R | 6 rsdmx-0.5-1/rsdmx/vignettes/quickstart.Rmd | 22 180 files changed, 2548 insertions(+), 1048 deletions(-)
Title: Regression and Similarity Evaluation for Memory-Based Learning
in Spectral Chemometrics
Description: Implementation of functions for spectral similarity/dissimilarity
analysis and memory-based learning (MBL) for non-linear modeling
in complex spectral datasets. MBL is also known as local modeling
in the chemometrics literature.
Author: Leonardo Ramirez-Lopez [aut, cre], Antoine Stevens [aut]
Maintainer: Leonardo Ramirez-Lopez <ramirez.lopez.leo@gmail.com>
Diff between resemble versions 1.1.1 dated 2014-03-19 and 1.2.1 dated 2016-02-02
resemble-1.1.1/resemble/R/resemblepackage.R |only resemble-1.1.1/resemble/man/fastDistV.Rd |only resemble-1.1.1/resemble/man/locFit.Rd |only resemble-1.1.1/resemble/man/resemble.Rd |only resemble-1.1.1/resemble/src/Makevars.win |only resemble-1.2.1/resemble/DESCRIPTION | 31 resemble-1.2.1/resemble/MD5 | 130 + resemble-1.2.1/resemble/NAMESPACE | 13 resemble-1.2.1/resemble/NEWS | 26 resemble-1.2.1/resemble/R/AAA.R | 2 resemble-1.2.1/resemble/R/RcppExports.R | 352 ++++- resemble-1.2.1/resemble/R/corDiss.R | 9 resemble-1.2.1/resemble/R/fDiss.R | 12 resemble-1.2.1/resemble/R/getPredictions.R | 2 resemble-1.2.1/resemble/R/mbl.R | 1336 ++++++++++++------- resemble-1.2.1/resemble/R/mblControl.R | 82 - resemble-1.2.1/resemble/R/orthoDiss.R | 30 resemble-1.2.1/resemble/R/orthoProjection.R | 495 +++---- resemble-1.2.1/resemble/R/plot.mbl.R | 40 resemble-1.2.1/resemble/R/plot.orthoProjection.R | 3 resemble-1.2.1/resemble/R/print.localOrthoDiss.R | 2 resemble-1.2.1/resemble/R/print.mbl.R | 11 resemble-1.2.1/resemble/R/print.orthoProjection.R | 3 resemble-1.2.1/resemble/R/resemble.R |only resemble-1.2.1/resemble/R/simEval.R | 4 resemble-1.2.1/resemble/README.md | 43 resemble-1.2.1/resemble/man/cSds.Rd | 4 resemble-1.2.1/resemble/man/cms.Rd |only resemble-1.2.1/resemble/man/colSds.Rd |only resemble-1.2.1/resemble/man/corDiss.Rd | 65 resemble-1.2.1/resemble/man/e2m.Rd | 5 resemble-1.2.1/resemble/man/fDiss.Rd | 96 - resemble-1.2.1/resemble/man/fastDist.Rd | 12 resemble-1.2.1/resemble/man/fastDistVV.Rd | 12 resemble-1.2.1/resemble/man/fastDistVVL.Rd |only resemble-1.2.1/resemble/man/fopls.Rd |only resemble-1.2.1/resemble/man/getPredictions.Rd | 20 resemble-1.2.1/resemble/man/gpr.dp.Rd | 4 resemble-1.2.1/resemble/man/gprCv.Rd | 6 resemble-1.2.1/resemble/man/gprdp.Rd |only resemble-1.2.1/resemble/man/isubset.Rd | 28 resemble-1.2.1/resemble/man/locFitnpred.Rd |only resemble-1.2.1/resemble/man/mbl.Rd | 617 +++----- resemble-1.2.1/resemble/man/mblControl.Rd | 273 +-- resemble-1.2.1/resemble/man/minDissV.Rd |only resemble-1.2.1/resemble/man/movcorDist.Rd | 12 resemble-1.2.1/resemble/man/neigCleaning.Rd | 286 +--- resemble-1.2.1/resemble/man/opls.Rd |only resemble-1.2.1/resemble/man/orthoDiss.Rd | 253 --- resemble-1.2.1/resemble/man/orthoProjection.Rd | 338 +--- resemble-1.2.1/resemble/man/pgpcv_cpp.Rd |only resemble-1.2.1/resemble/man/plot.mbl.Rd | 41 resemble-1.2.1/resemble/man/plot.orthoProjection.Rd | 15 resemble-1.2.1/resemble/man/plsCv.Rd | 10 resemble-1.2.1/resemble/man/pplscv_cpp.Rd |only resemble-1.2.1/resemble/man/pred.gpr.dp.Rd | 5 resemble-1.2.1/resemble/man/predgprdp.Rd |only resemble-1.2.1/resemble/man/predopls.Rd |only resemble-1.2.1/resemble/man/print.localOrthoDiss.Rd | 11 resemble-1.2.1/resemble/man/print.mbl.Rd | 10 resemble-1.2.1/resemble/man/print.orthoProjection.Rd | 12 resemble-1.2.1/resemble/man/projectpls.Rd |only resemble-1.2.1/resemble/man/resemble-package.Rd |only resemble-1.2.1/resemble/man/sid.Rd | 206 -- resemble-1.2.1/resemble/man/simEval.Rd | 163 -- resemble-1.2.1/resemble/man/smpl.Rd |only resemble-1.2.1/resemble/man/sqrtSm.Rd | 4 resemble-1.2.1/resemble/man/wapls.weights.Rd | 43 resemble-1.2.1/resemble/man/waplswCpp.Rd |only resemble-1.2.1/resemble/man/wcolSds.Rd |only resemble-1.2.1/resemble/man/which_min.Rd | 12 resemble-1.2.1/resemble/man/which_minV.Rd | 19 resemble-1.2.1/resemble/src/Makevars | 2 resemble-1.2.1/resemble/src/RcppExports.cpp | 313 +++- resemble-1.2.1/resemble/src/fastDist.cpp | 190 +- resemble-1.2.1/resemble/src/movcorDist.cpp | 2 resemble-1.2.1/resemble/src/regalg.cpp |only resemble-1.2.1/resemble/src/which_min.cpp | 12 78 files changed, 2982 insertions(+), 2745 deletions(-)
Title: Predicting Species Accumulation Curves
Description: Estimating the number of species represented r or more times in a random sample.
Author: Chao Deng, Timothy Daley and Andrew D. Smith
Maintainer: Chao Deng <chaodeng@usc.edu>
Diff between preseqR versions 1.2.1 dated 2015-06-04 and 2.0.0 dated 2016-02-02
DESCRIPTION | 11 +- MD5 | 44 ++++---- NAMESPACE | 10 + R/continued_fraction.R | 175 ++++++++++++-------------------- R/mincount.R |only R/simulation.R | 48 +------- R/ztnb.R | 132 ++++++++++++++++++------ README.md | 9 + inst |only man/preseqR.interpolate.distinct.Rd | 33 ++---- man/preseqR.interpolate.mincount.Rd |only man/preseqR.nonreplace.sampling.Rd | 30 ++--- man/preseqR.package.Rd | 54 ++++++--- man/preseqR.pf.mincount.Rd |only man/preseqR.pf.mincount.bootstrap.Rd |only man/preseqR.rfa.curve.Rd | 47 ++++---- man/preseqR.rfa.estimate.Rd | 11 +- man/preseqR.rfa.species.accum.curve.Rd | 92 ++++++++-------- man/preseqR.simu.hist.Rd | 20 +-- man/preseqR.ztnb.em.Rd | 22 ++-- man/preseqR.ztnb.estimate.Rd | 46 ++++---- man/preseqR.ztnb.mincount.Rd |only man/preseqR.ztnb.species.accum.curve.Rd | 50 +++++---- src/continued_fraction.cpp | 49 -------- src/continued_fraction.h | 4 src/continued_fraction_c_interface.cpp | 41 +++++-- 26 files changed, 474 insertions(+), 454 deletions(-)
Title: Photobiological Calculations
Description: Definitions of classes, methods, operators and functions for use in
photobiology and radiation meteorology and climatology. Calculation of
effective (weighted) and not-weighted irradiances/doses, fluence rates,
transmittance, reflectance, absorptance, absorbance and diverse ratios and
other derived quantities from spectral data. Local maxima and minima.
Conversion between energy- and photon-based units. Wavelength interpolation.
Astronomical calculations related solar angles and day length. Colours and
vision.
Author: Pedro J. Aphalo [aut, cre]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiology versions 0.9.4 dated 2016-02-01 and 0.9.5 dated 2016-02-02
photobiology-0.9.4/photobiology/R/RcppExports.R |only photobiology-0.9.4/photobiology/man/put_hinges.Rd |only photobiology-0.9.4/photobiology/src |only photobiology-0.9.5/photobiology/DESCRIPTION | 17 ++-- photobiology-0.9.5/photobiology/MD5 | 36 ++++------ photobiology-0.9.5/photobiology/NAMESPACE | 3 photobiology-0.9.5/photobiology/NEWS | 5 + photobiology-0.9.5/photobiology/R/insert.hinges.r |only photobiology-0.9.5/photobiology/R/integrate.xy.r |only photobiology-0.9.5/photobiology/R/photobiology.r | 2 photobiology-0.9.5/photobiology/R/spct.insert.spct.hinges.r | 13 ++- photobiology-0.9.5/photobiology/R/spct.transmittance.r | 2 photobiology-0.9.5/photobiology/README.md | 7 + photobiology-0.9.5/photobiology/inst/doc/userguide.Rnw | 1 photobiology-0.9.5/photobiology/inst/doc/userguide.pdf |binary photobiology-0.9.5/photobiology/man/insert_hinges.Rd | 30 +++++--- photobiology-0.9.5/photobiology/man/integrate_xy.Rd | 3 photobiology-0.9.5/photobiology/vignettes/userguide-concordance.tex | 2 photobiology-0.9.5/photobiology/vignettes/userguide.Rnw | 1 19 files changed, 64 insertions(+), 58 deletions(-)
Title: Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for
Phylogenetic Comparative Hypotheses
Description: Fits multivariate Ornstein-Uhlenbeck types of models to continues trait data from species related by a common evolutionary history.
Author: Krzysztof Bartoszek <bartoszekkj@gmail.com>
Maintainer: Krzysztof Bartoszek <bartoszekkj@gmail.com>
Diff between mvSLOUCH versions 1.2.1 dated 2015-08-12 and 1.2.2 dated 2016-02-02
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- R/MVslouchSimulStudy.R | 2 +- R/PhyloSDEestim.R | 9 +++++++-- R/ci.R | 8 ++++---- R/estimGLSGC.R | 4 ++-- R/estimMAXLIK.R | 6 +++--- R/modelparams.R | 2 +- R/modelparamssummary.R | 32 ++++++++++++++++++-------------- R/treeDists.R | 8 ++++++-- 10 files changed, 54 insertions(+), 41 deletions(-)
Title: Logspline Density Estimation Routines
Description: Routines for the logspline density estimation. oldlogspline()
uses the same algorithm as the logspline 1.0.x package - the Kooperberg
and Stone (1992) <DOI: 10.2307/1390786> algorithm (with an improved interface).
The recommended routine logspline() uses an algorithm from Stone et al (1997).
<DOI: 10.1214/aos/1031594728>
Author: Charles Kooperberg <clk@fredhutch.org>
Maintainer: Charles Kooperberg <clk@fredhutch.org>
Diff between logspline versions 2.1.8 dated 2015-07-02 and 2.1.9 dated 2016-02-02
DESCRIPTION | 17 +++++++++-------- MD5 | 8 ++++---- R/logspline.R | 15 +++++++++++++++ src/lsdall.c | 25 +++++++++++++------------ src/nlsd.c | 25 +++++++++++++------------ 5 files changed, 54 insertions(+), 36 deletions(-)
Title: High-Throughput Toxicokinetics
Description: Functions and data tables for simulation and statistical analysis of chemical toxicokinetics ("TK") using data obtained from relatively high throughput, in vitro studies. Both physiologically-based ("PBTK") and empirical (e.g., one compartment) "TK" models can be parameterized for several hundred chemicals and multiple species. These models are solved efficiently, often using compiled (C-based) code. A Monte Carlo sampler is included for simulating biological variability and measurement limitations. Functions are also provided for exporting "PBTK" models to "SBML" and "JARNAC" for use with other simulation software. These functions and data provide a set of tools for in vitro-in vivo extrapolation ("IVIVE") of high throughput screening data (e.g., ToxCast) to real-world exposures via reverse dosimetry (also known as "RTK").
Author: John Wambaugh and Robert Pearce, Schmitt method implementation by Jimena Davis, dynamic model adapted from code by R. Woodrow Setzer, Rabbit parameters from Nisha Sipes
Maintainer: John Wambaugh <wambaugh.john@epa.gov>
Diff between httk versions 1.3 dated 2015-10-14 and 1.4 dated 2016-02-02
httk-1.3/httk/R/Get_lumped_tissues.R |only httk-1.4/httk/DESCRIPTION | 8 ++-- httk-1.4/httk/MD5 | 43 +++++++++++------------ httk-1.4/httk/NAMESPACE | 2 - httk-1.4/httk/R/Calc_ratioblood2plasma.R | 15 +++----- httk-1.4/httk/R/Calc_volume_of_distribution.R | 19 ++++------ httk-1.4/httk/R/Parameterize_PBTK.r | 19 ++++------ httk-1.4/httk/R/Parameterize_SteadyState.R | 16 +++----- httk-1.4/httk/R/calc_analytic_css.R | 4 +- httk-1.4/httk/R/lump_tissues.R |only httk-1.4/httk/R/parameterize_1comp.R | 15 +++----- httk-1.4/httk/R/parameterize_schmitt.R | 15 +++----- httk-1.4/httk/R/solve_1comp.R | 2 + httk-1.4/httk/R/solve_3comp.R | 3 + httk-1.4/httk/R/solve_pbtk.R | 6 +-- httk-1.4/httk/data/Tables.RData |binary httk-1.4/httk/man/PK_physiology_data.Rd | 6 +-- httk-1.4/httk/man/Parameterize_PBTK.Rd | 3 - httk-1.4/httk/man/Wetmore.data.Rd | 2 - httk-1.4/httk/man/chem_invivo_PK_summary_data.Rd | 4 +- httk-1.4/httk/man/lump_tissues.Rd |only httk-1.4/httk/man/solve_1comp_pk.Rd | 2 + httk-1.4/httk/man/solve_3comp_pbpk.Rd | 2 + httk-1.4/httk/man/solve_pbtk.Rd | 2 + 24 files changed, 95 insertions(+), 93 deletions(-)
Title: Basic Sensitivity Analysis of Epidemiological Results
Description: Basic sensitivity analysis of the observed relative risks adjusting
for unmeasured confounding and misclassification of the
exposure/outcome, or both. It follows the bias analysis methods and
examples from the book by Lash T.L, Fox M.P, and Fink A.K.
"Applying Quantitative Bias Analysis to Epidemiologic Data",
('Springer', 2009).
Author: Denis Haine [aut, cre]
Maintainer: Denis Haine <denis.haine@gmail.com>
Diff between episensr versions 0.7.1 dated 2015-10-05 and 0.7.2 dated 2016-02-02
DESCRIPTION | 21 +++++++++--------- MD5 | 53 +++++++++++++++++++++++------------------------ NAMESPACE | 2 - NEWS.md |only R/confounders.R | 14 ++++++------ R/confounders.emm.R | 14 ++++++------ R/confounders.poly.R | 14 ++++++------ R/misclassification.R | 15 ++++++------- R/multidimBias.R | 14 ++++++------ R/probsens.R | 14 ++++++------ R/probsens.conf.R | 14 ++++++------ R/probsens.sel.R | 14 ++++++------ R/selection.R | 14 ++++++------ man/confounders.Rd | 8 +++---- man/confounders.emm.Rd | 8 +++---- man/confounders.limit.Rd | 2 - man/confounders.poly.Rd | 8 +++---- man/mbias.Rd | 2 - man/misclassification.Rd | 9 +++---- man/multidimBias.Rd | 8 +++---- man/plot.mbias.Rd | 3 +- man/print.mbias.Rd | 2 - man/probsens.Rd | 8 +++---- man/probsens.conf.Rd | 8 +++---- man/probsens.irr.Rd | 2 - man/probsens.irr.conf.Rd | 2 - man/probsens.sel.Rd | 8 +++---- man/selection.Rd | 8 +++---- 28 files changed, 145 insertions(+), 144 deletions(-)
Title: Read Epanet Files into R
Description: Reads water network simulation data in Epanet's text-based
'.inp' and '.rpt' formats into R. Also reads results from Epanet-msx.
Provides basic summary information and plots.
The README file has a quick introduction. See http://www2.epa.gov/
water-research/epanet for more information on the Epanet software for modeling
hydraulic and water quality behavior of water piping systems.
Author: Bradley J. Eck
Maintainer: Bradley Eck <brad@bradeck.net>
Diff between epanetReader versions 0.2.2 dated 2015-09-08 and 0.3.1 dated 2016-02-02
DESCRIPTION | 22 ++++++----- MD5 | 70 ++++++++++++++++++++++++------------- NAMESPACE | 11 +++++ NEWS |only R/Net1-data.r |only R/Net1rpt-data.r |only R/epanet.inp-s3.r | 53 ++++++++++++++++++++++------ R/epanet.rpt-s3.r | 13 +++--- R/epanetReader.r | 6 +-- R/epanetmsx.rpt-s3.r |only R/expandedLinkTable-s3.r | 22 ++++++----- R/inpFuncs.r | 66 +++++++++++++++++++++++++++++++--- R/msxFuncs.r |only R/plotSparklineTable.R |only R/rptFuncs.r | 49 +++++++++++++++++-------- R/sparkline-s3.r |only R/sparklineTable-s3.r |only README.md | 43 ++++++++++++++++++++-- data |only inst/extdata/example.rpt |only man/Net1.Rd |only man/Net1rpt.Rd |only man/binBreaker.Rd | 4 +- man/epanetDefaultOptions.Rd | 7 ++- man/epanetReader.Rd | 6 +-- man/expandedLinkTable.Rd | 9 +++- man/plot.epanet.inp.Rd | 10 ++++- man/plot.epanet.rpt.Rd | 4 +- man/plot.epanetmsx.rpt.Rd |only man/plot.expandedLinkTable.Rd | 6 ++- man/plot.sparkline.Rd |only man/plot.sparklineTable.Rd |only man/plotElementsLegend.Rd | 12 +++++- man/plotInpLinks.Rd | 12 +++++- man/plotInpNodes.Rd | 13 +++++- man/plotSparklineTable.Rd |only man/print.summary.epanet.rpt.Rd | 2 - man/print.summary.epanetmsx.rpt.Rd |only man/read.inp.Rd | 26 +++++++------ man/read.msxrpt.Rd |only man/read.rpt.Rd | 14 ++++--- man/sparkline.Rd |only man/sparklineTable.Rd |only man/summary.epanet.inp.Rd | 2 - man/summary.epanet.rpt.Rd | 4 +- man/summary.epanetmsx.rpt.Rd |only 46 files changed, 357 insertions(+), 129 deletions(-)
Title: Interface to 'Dygraphs' Interactive Time Series Charting Library
Description: An R interface to the 'dygraphs' JavaScript charting library
(a copy of which is included in the package). Provides rich facilities
for charting time-series data in R, including highly configurable
series- and axis-display and interactive features like zoom/pan and
series/point highlighting.
Author: Dan Vanderkam [aut, cph] (dygraphs library in htmlwidgets/lib,
http://dygraphs.com/),
JJ Allaire [aut, cre] (R interface),
RStudio [cph],
Jonathan Owen [aut, cph],
Daniel Gromer [aut, cph],
Petr Shevtsov [aut, cph],
Benoit Thieurmel [aut, cph],
jQuery Foundation [cph] (jQuery library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/htmlwidgets/lib/jquery/AUTHORS.txt)
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between dygraphs versions 0.6 dated 2015-12-21 and 0.7 dated 2016-02-02
DESCRIPTION | 23 ++++- LICENSE | 4 - MD5 | 47 ++++++------ NAMESPACE | 2 R/series.R | 4 - inst/NEWS | 10 ++ inst/htmlwidgets/dygraphs.js | 19 ++++ man/dyAnnotation.Rd | 27 +++---- man/dyAxis.Rd | 83 ++++++++++----------- man/dyCSS.Rd | 16 ++-- man/dyCallbacks.Rd | 28 +++---- man/dyEvent.Rd | 9 +- man/dyHighlight.Rd | 27 +++---- man/dyLegend.Rd | 25 +++--- man/dyLimit.Rd | 13 +-- man/dyOptions.Rd | 162 +++++++++++++++++++++--------------------- man/dyRangeSelector.Rd | 39 +++++----- man/dyRoller.Rd | 11 +- man/dySeries.Rd | 51 ++++++------- man/dySeriesData.Rd | 2 man/dyShading.Rd | 11 +- man/dygraph-shiny.Rd | 10 +- man/dygraph.Rd | 11 +- man/dygraphs-exports.Rd | 2 tests/testthat/test-plotter.R |only 25 files changed, 343 insertions(+), 293 deletions(-)
Title: Planning and Analyzing Dose Finding Experiments
Description: The DoseFinding package provides functions for the design and analysis
of dose-finding experiments (with focus on pharmaceutical Phase
II clinical trials). It provides functions for: multiple contrast
tests, fitting non-linear dose-response models (using Bayesian and
non-Bayesian estimation), calculating optimal designs and an
implementation of the MCPMod methodology.
Author: Bjoern Bornkamp, Jose Pinheiro, Frank Bretz
Maintainer: Bjoern Bornkamp <bbnkmp@gmail.com>
Diff between DoseFinding versions 0.9-13 dated 2015-11-10 and 0.9-14 dated 2016-02-02
DoseFinding-0.9-13/DoseFinding/R/qmvtDF.R |only DoseFinding-0.9-14/DoseFinding/ChangeLog | 5 ++ DoseFinding-0.9-14/DoseFinding/DESCRIPTION | 8 +-- DoseFinding-0.9-14/DoseFinding/MD5 | 11 ++--- DoseFinding-0.9-14/DoseFinding/R/MCTtest.R | 8 +-- DoseFinding-0.9-14/DoseFinding/man/DoseFinding-package.Rd | 4 - DoseFinding-0.9-14/DoseFinding/man/planMod.Rd | 30 ++++++++------ 7 files changed, 37 insertions(+), 29 deletions(-)
Title: An Object-Oriented Framework for Geostatistical Modeling in S+
Description: An Object-oriented Framework for Geostatistical Modeling in S+
containing functions for variogram estimation, variogram fitting and kriging
as well as some plot functions. Written entirely in S, therefore works only
for small data sets in acceptable computing time.
Author: S original by James J. Majure <majure@iastate.edu> Iowa State University, R port + extensions by Albrecht Gebhardt <albrecht.gebhardt@aau.at>
Maintainer: Albrecht Gebhardt <albrecht.gebhardt@aau.at>
Diff between sgeostat versions 1.0-26 dated 2015-09-01 and 1.0-27 dated 2016-02-02
ChangeLog |only DESCRIPTION | 8 ++++---- MD5 | 5 +++-- R/spacebox.R | 3 +-- 4 files changed, 8 insertions(+), 8 deletions(-)
Title: A Google Analytics API Client
Description: Provides functions for accessing and retrieving data from the
Google Analytics APIs (https://developers.google.com/analytics/). Supports
OAuth 2.0 authorization. Package provides access to the Management, Core
Reporting, Multi-Channel Funnels Reporting, Real Time Reporting and
Metadata APIs. Access to all the Google Analytics accounts which the user
has access to. Auto-pagination to return more than 10,000 rows of the
results by combining multiple data requests. Also package provides
shiny app to explore the core reporting API dimensions and metrics.
Author: Artem Klevtsov [aut, cre],
Philipp Upravitelev [ctb],
Olga Shramko [ctb]
Maintainer: Artem Klevtsov <a.a.klevtsov@gmail.com>
Diff between RGA versions 0.3.2 dated 2015-12-27 and 0.4.0 dated 2016-02-02
RGA-0.3.2/RGA/R/custom-dims.R |only RGA-0.3.2/RGA/R/custom-mets.R |only RGA-0.3.2/RGA/R/custom-sources.R |only RGA-0.3.2/RGA/R/unsampled.R |only RGA-0.4.0/RGA/DESCRIPTION | 18 +- RGA-0.4.0/RGA/MD5 | 144 ++++++++--------- RGA-0.4.0/RGA/R/auth.R | 21 +- RGA-0.4.0/RGA/R/convert.R | 55 +++--- RGA-0.4.0/RGA/R/customDataSources.R |only RGA-0.4.0/RGA/R/customDimensions.R |only RGA-0.4.0/RGA/R/customMetrics.R |only RGA-0.4.0/RGA/R/date-ranges.R | 18 +- RGA-0.4.0/RGA/R/experiments.R | 8 RGA-0.4.0/RGA/R/filters.R | 8 RGA-0.4.0/RGA/R/firstdate.R | 8 RGA-0.4.0/RGA/R/ga.R | 10 - RGA-0.4.0/RGA/R/get-data.R | 12 - RGA-0.4.0/RGA/R/goals.R | 8 RGA-0.4.0/RGA/R/mcf.R | 10 - RGA-0.4.0/RGA/R/metadata.R | 53 +++--- RGA-0.4.0/RGA/R/mgmt.R | 2 RGA-0.4.0/RGA/R/profiles.R | 8 RGA-0.4.0/RGA/R/realtime.R | 6 RGA-0.4.0/RGA/R/report.R | 40 ++-- RGA-0.4.0/RGA/R/request.R | 18 -- RGA-0.4.0/RGA/R/unsampledReports.R |only RGA-0.4.0/RGA/R/uploads.R | 8 RGA-0.4.0/RGA/R/url.R | 3 RGA-0.4.0/RGA/R/utils.R | 15 - RGA-0.4.0/RGA/R/webproperties.R | 8 RGA-0.4.0/RGA/data/ga.rda |binary RGA-0.4.0/RGA/inst/NEWS.Rd | 20 ++ RGA-0.4.0/RGA/inst/doc/authorize.Rmd | 8 RGA-0.4.0/RGA/inst/doc/authorize.html | 22 +- RGA-0.4.0/RGA/inst/doc/management-api.Rmd | 10 - RGA-0.4.0/RGA/inst/doc/management-api.html | 24 +- RGA-0.4.0/RGA/inst/doc/metadata-api.Rmd | 22 +- RGA-0.4.0/RGA/inst/doc/metadata-api.html | 36 ++-- RGA-0.4.0/RGA/inst/doc/reporting-api.Rmd | 18 +- RGA-0.4.0/RGA/inst/doc/reporting-api.html | 31 +-- RGA-0.4.0/RGA/inst/shiny-examples/01-dimsmets/global.R | 2 RGA-0.4.0/RGA/inst/shiny-examples/01-dimsmets/server.R | 2 RGA-0.4.0/RGA/man/authorize.Rd | 8 RGA-0.4.0/RGA/man/firstdate.Rd | 6 RGA-0.4.0/RGA/man/ga.Rd | 20 +- RGA-0.4.0/RGA/man/get_custom_dimension.Rd | 14 - RGA-0.4.0/RGA/man/get_custom_metric.Rd | 14 - RGA-0.4.0/RGA/man/get_experiment.Rd | 44 ++--- RGA-0.4.0/RGA/man/get_filter.Rd | 88 +++++----- RGA-0.4.0/RGA/man/get_ga.Rd | 10 - RGA-0.4.0/RGA/man/get_goal.Rd | 60 +++---- RGA-0.4.0/RGA/man/get_mcf.Rd | 10 - RGA-0.4.0/RGA/man/get_profile.Rd | 34 ++-- RGA-0.4.0/RGA/man/get_realtime.Rd | 4 RGA-0.4.0/RGA/man/get_unsampled_report.Rd | 32 +-- RGA-0.4.0/RGA/man/get_upload.Rd | 14 - RGA-0.4.0/RGA/man/get_webproperty.Rd | 18 +- RGA-0.4.0/RGA/man/list_custom_data_sources.Rd | 18 +- RGA-0.4.0/RGA/man/list_custom_dimensions.Rd | 12 - RGA-0.4.0/RGA/man/list_custom_metrics.Rd | 12 - RGA-0.4.0/RGA/man/list_dimsmets.Rd | 24 +- RGA-0.4.0/RGA/man/list_experiments.Rd | 42 ++-- RGA-0.4.0/RGA/man/list_filters.Rd | 86 +++++----- RGA-0.4.0/RGA/man/list_goals.Rd | 60 +++---- RGA-0.4.0/RGA/man/list_profiles.Rd | 32 +-- RGA-0.4.0/RGA/man/list_segments.Rd | 2 RGA-0.4.0/RGA/man/list_unsampled_reports.Rd | 28 +-- RGA-0.4.0/RGA/man/list_uploads.Rd | 14 - RGA-0.4.0/RGA/man/list_webproperties.Rd | 16 - RGA-0.4.0/RGA/tests/testthat/test-convert-ga.R | 14 - RGA-0.4.0/RGA/tests/testthat/test-convert-mcf.R | 38 ++-- RGA-0.4.0/RGA/tests/testthat/test-convert-mgmt.R | 14 - RGA-0.4.0/RGA/tests/testthat/test-metadata.R | 8 RGA-0.4.0/RGA/vignettes/authorize.Rmd | 8 RGA-0.4.0/RGA/vignettes/management-api.Rmd | 10 - RGA-0.4.0/RGA/vignettes/metadata-api.Rmd | 22 +- RGA-0.4.0/RGA/vignettes/reporting-api.Rmd | 18 +- 77 files changed, 774 insertions(+), 756 deletions(-)
Title: Statistical Functions for the Censored and Uncensored
Epanechnikov Distribution
Description: Analyzing censored variables usually requires the use of optimization algorithms. This package provides an alternative algebraic approach to the task of determining the expected value of a random censored variable with a known censoring point. Likewise this approach allows for the determination of the censoring point if the expected value is known. These results are derived under the assumption that the variable follows an Epanechnikov kernel distribution with known mean and range prior to censoring. Statistical functions related to the uncensored Epanechnikov distribution are also provided by this package.
Author: Mathias Borritz Milfeldt [aut, cre]
Maintainer: Mathias Borritz Milfeldt <mathias@milfeldt.dk>
Diff between epandist versions 1.0.2 dated 2015-11-10 and 1.1.0 dated 2016-02-02
DESCRIPTION | 6 +-- MD5 | 32 ++++++++--------- R/cepan.R | 61 +++++++++++++++++++-------------- R/depan.R | 25 ++++++------- R/evepan.R | 49 +++++++++++++-------------- R/pepan.R | 34 +++++++----------- R/qepan.R | 20 +++++------ R/repan.R | 20 +++++------ README.md | 2 - inst/doc/Vignette_epandist.R | 30 ++++++++-------- inst/doc/Vignette_epandist.Rmd | 72 ++++++++++++++++++++++------------------ inst/doc/Vignette_epandist.html | 72 ++++++++++++++++++++++------------------ man/cepan.Rd | 14 +++++-- man/depan.Rd | 8 ++-- man/evepan.Rd | 18 +++++----- man/pepan.Rd | 8 ++-- vignettes/Vignette_epandist.Rmd | 72 ++++++++++++++++++++++------------------ 17 files changed, 289 insertions(+), 254 deletions(-)
Title: Analysis of Diffusion Weighted Imaging (DWI) Data
Description: Diffusion Weighted Imaging (DWI) is a Magnetic Resonance Imaging
modality, that measures diffusion of water in tissues like the human
brain. The package contains R-functions to process diffusion-weighted
data. The functionality includes diffusion tensor imaging (DTI),
diffusion kurtosis imaging (DKI), modeling for high angular resolution
diffusion weighted imaging (HARDI) using Q-ball-reconstruction and
tensor mixture models, several methods for structural adaptive
smoothing including POAS and msPOAS, and a streamline fiber tracking
for tensor and tensor mixture models.
The package provides functionality to manipulate and visualize results
in 2D and 3D.
Author: Karsten Tabelow [aut, cre],
Joerg Polzehl [aut],
Felix Anker [ctb]
Maintainer: Karsten Tabelow <karsten.tabelow@wias-berlin.de>
Diff between dti versions 1.2-0.1 dated 2014-12-16 and 1.2-4 dated 2016-02-02
dti-1.2-0.1/dti/R/sqrtODF.r |only dti-1.2-0.1/dti/src/mixtensor.h |only dti-1.2-4/dti/DESCRIPTION | 16 dti-1.2-4/dti/MD5 | 87 +- dti-1.2-4/dti/NAMESPACE | 19 dti-1.2-4/dti/R/Classes.r | 368 ++++----- dti-1.2-4/dti/R/MD.r |only dti-1.2-4/dti/R/aws.r | 3 dti-1.2-4/dti/R/aws2.r | 10 dti-1.2-4/dti/R/awsse3.r | 390 ++++------ dti-1.2-4/dti/R/awsse3ms.r | 32 dti-1.2-4/dti/R/awsse3mstestprop.r | 259 +++--- dti-1.2-4/dti/R/awsse3mswghts.r | 357 ++++----- dti-1.2-4/dti/R/dki.r | 602 +++++---------- dti-1.2-4/dti/R/dtijkn.r | 485 ++++++------ dti-1.2-4/dti/R/dtineu.r | 573 ++++++++------ dti-1.2-4/dti/R/fibers.r | 351 ++++----- dti-1.2-4/dti/R/hardi.r | 242 +++--- dti-1.2-4/dti/R/io.r | 893 +++++++++++------------ dti-1.2-4/dti/R/misc.r | 615 ++++++++------- dti-1.2-4/dti/R/mixtensnew.r |only dti-1.2-4/dti/R/mixtensorpl.r | 1281 +++++++++++++++------------------ dti-1.2-4/dti/R/multishell.r | 357 ++++----- dti-1.2-4/dti/R/parallel.r | 482 +++++++----- dti-1.2-4/dti/R/paramse3.r | 85 +- dti-1.2-4/dti/R/plot.r | 458 +++++------ dti-1.2-4/dti/R/ricebias.r | 72 - dti-1.2-4/dti/R/show3d.r | 852 +++++++++++---------- dti-1.2-4/dti/R/smse3misc.r | 208 ++--- dti-1.2-4/dti/R/spherharm.r | 36 dti-1.2-4/dti/R/tracking.r | 180 ++-- dti-1.2-4/dti/R/utilities.r | 772 +++++++++---------- dti-1.2-4/dti/R/varest.r | 855 +++++++++------------- dti-1.2-4/dti/man/awssigmc.Rd | 2 dti-1.2-4/dti/man/dkiTensor-methods.Rd | 2 dti-1.2-4/dti/man/dwiMD-methods.Rd |only dti-1.2-4/dti/man/sdpar-methods.Rd | 4 dti-1.2-4/dti/src/Fibertracking.cpp | 2 dti-1.2-4/dti/src/Vector.cpp | 7 dti-1.2-4/dti/src/Vector.h | 2 dti-1.2-4/dti/src/bessel.c | 4 dti-1.2-4/dti/src/bmixtensorpl.c |only dti-1.2-4/dti/src/esiglike.f | 14 dti-1.2-4/dti/src/init.c |only dti-1.2-4/dti/src/misc.f | 87 ++ dti-1.2-4/dti/src/miscmt.f |only dti-1.2-4/dti/src/mixtenbv.f |only dti-1.2-4/dti/src/mixtens.f | 291 ------- dti-1.2-4/dti/src/varest.f | 118 ++- 49 files changed, 5623 insertions(+), 5850 deletions(-)
Title: Analytic Hierarchy Process
Description: Model and analyse complex decision making problems
using the Analytic Hierarchy Process (AHP) by Thomas Saaty.
Author: Christoph Glur
Maintainer: Christoph Glur <christoph.glur@ipub.com>
Diff between ahp versions 0.2.4 dated 2016-01-15 and 0.2.7 dated 2016-02-02
DESCRIPTION | 9 +++-- MD5 | 40 ++++++++++++------------- NAMESPACE | 2 - NEWS | 8 +++++ R/analyze.R | 9 +++-- R/table.R | 5 +-- R/visualize.R | 3 - inst/gui/shiny/ui.R | 4 +- man/AhpMatrix.Rd | 2 - man/Analyze.Rd | 9 +++-- man/Calculate.Rd | 4 +- man/GetPairwiseFromFunction.Rd | 2 - man/Load.Rd | 9 +++-- man/PrioritiesFromPairwiseMatrixEigenvalues.Rd | 6 +-- man/PrioritiesFromScoresDefault.Rd | 4 +- man/RunGUI.Rd | 2 - man/Visualize.Rd | 2 - man/ahp.Rd | 9 +++-- tests/testthat/test-Analyze.R | 33 ++++++++++++++++++++ tests/testthat/test-Visualize.R | 5 ++- tests/testthat/test-ahpBasics.R | 2 - 21 files changed, 109 insertions(+), 60 deletions(-)
Title: Survey Planning Tools
Description: Tools for sample survey planning, including sample size calculation, estimation of expected precision for the estimates of totals, and calculation of optimal sample size allocation.
Author: Juris Breidaks [aut, cre],
Martins Liberts [aut],
Janis Jukams [aut]
Maintainer: Juris Breidaks <rcsb@csb.gov.lv>
Diff between surveyplanning versions 1.0 dated 2015-12-23 and 1.2 dated 2016-02-02
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/dom_optimal_allocation.R | 15 +++++++-------- man/surveyplanning-package.Rd | 4 ++-- 4 files changed, 16 insertions(+), 17 deletions(-)
More information about surveyplanning at CRAN
Permanent link
Title: An R Package for Reading and Writing BAM (Binary Alignment)
Files
Description: Provides an interface to functions of the 'SAMtools' C-Library by Heng Li.
Author: Wolfgang Kaisers
Maintainer: Wolfgang Kaisers <kaisers@med.uni-duesseldorf.de>
Diff between rbamtools versions 2.12.3 dated 2015-07-27 and 2.13.0 dated 2016-02-02
ChangeLog | 2 ++ DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS | 17 +++++++++++++++++ build/vignette.rds |binary inst/doc/rbamtools.pdf |binary src/data_frame.h | 20 +++----------------- src/rbamtools.h | 11 +++++------ 8 files changed, 38 insertions(+), 34 deletions(-)
Title: Multivariate Normal and t Distributions
Description: Computes multivariate normal and t probabilities, quantiles,
random deviates and densities.
Author: Alan Genz [aut],
Frank Bretz [aut],
Tetsuhisa Miwa [aut],
Xuefei Mi [aut],
Friedrich Leisch [ctb],
Fabian Scheipl [ctb],
Bjoern Bornkamp [ctb],
Martin Maechler [ctb],
Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mvtnorm versions 1.0-4 dated 2016-01-19 and 1.0-5 dated 2016-02-02
DESCRIPTION | 8 +-- MD5 | 19 ++++----- NAMESPACE | 2 R/mvt.R | 81 +++++++++++++++++++++++++++++++--------- R/noisy-root.R | 35 ++++++++--------- inst/NEWS | 4 + inst/doc/MVT_Rnews.pdf |binary tests/bugfix-tests.R | 10 ++++ tests/bugfix-tests.Rout.save | 48 ++++++++++++++++++----- tests/test-getInt.R |only tests/test-noisy-root.Rout.save | 26 ++++++------ 11 files changed, 159 insertions(+), 74 deletions(-)
Title: Multidimensional Scaling
Description: Provides the following approaches for multidimensional scaling (MDS) based on stress minimization by means of majorization (smacof): basic MDS on symmetric dissimilarity matrices,
MDS with external constraints on the configuration, individual difference scaling (idioscal, indscal, and friends), MDS with spherical restrictions, and unfolding. The MDS type can be ratio, interval, ordinal, and monotone splines.
Various tools and extensions like jackknife MDS, permutation tests, gravity models, inverse MDS, unidimensional scaling, classical scaling, and Procrustes.
Author: Patrick Mair [aut, cre], Jan De Leeuw [aut], Ingwer Borg [ctb], Patrick J. F. Groenen [ctb]
Maintainer: Patrick Mair <mair@fas.harvard.edu>
Diff between smacof versions 1.7-0 dated 2015-08-10 and 1.8-10 dated 2016-02-02
DESCRIPTION | 31 ++++------- MD5 | 101 ++++++++++++++++++++++---------------- NAMESPACE | 103 +++++++++++++++++++++------------------ R/biplotmds.R |only R/biplotmds.smacof.R |only R/driftVectors.R |only R/fitCircle.R |only R/idioscal.R | 9 +-- R/indscal.R | 9 +-- R/initConf.R | 23 ++++---- R/mds.R |only R/permtest.R | 3 - R/permtest.smacof.R | 81 +++++++++++++++++++++++------- R/permtest.smacofR.R | 19 ++++--- R/plot.driftvec.R |only R/plot.mdsbi.R |only R/plot.procr.R | 12 ++-- R/plot.smacof.R | 6 +- R/plot.smacofID.r | 86 ++++++++------------------------ R/plot.smacofJK.R | 13 ++-- R/plot.smacofR.R | 86 +++++++++++++++----------------- R/print.driftvec.R |only R/print.smacofB.R | 6 +- R/print.smacofID.R | 2 R/print.smacofPerm.R | 2 R/print.smacofR.R | 2 R/print.smacofSP.R | 2 R/randomstress.R | 2 R/smacofConstraint.R | 99 +++++++++++++++++++++++-------------- R/smacofIndDiff.R | 124 ++++++++++++++++++++++++++++++----------------- R/smacofSphere.R | 9 ++- R/smacofSym.R | 10 ++- R/spp.R | 13 +--- R/symdecomp.R |only R/updext.R |only build/vignette.rds |binary data/OCP.rda |binary data/indvalues.rda |only data/kinshipscales.rda |binary data/morse2.rda |only inst/NEWS.Rd | 49 ++++++++++++++++++ inst/doc/smacof.pdf |binary man/OCP.Rd | 6 +- man/Procrustes.Rd | 19 ++++--- man/biplotmds.smacof.Rd |only man/driftVectors.Rd |only man/fitCircle.Rd |only man/gravity.Rd | 5 - man/indvalues.Rd |only man/jackknife.smacofB.Rd | 8 +-- man/kinshipdelta.Rd | 2 man/morse.Rd | 9 +++ man/permtest.smacof.Rd | 46 ++++++++++++----- man/plot.smacof.rd | 13 ++-- man/randomstress.Rd | 2 man/smacofConstraint.rd | 38 +++++++++----- man/smacofIndDiff.Rd | 39 +++++++++----- man/smacofSphere.Rd | 20 ++++--- man/smacofSym.Rd | 20 ++++--- man/symdecomp.Rd |only 60 files changed, 668 insertions(+), 461 deletions(-)
Title: Empirical Bayes Estimation and Inference in R
Description: Kiefer-Wolfowitz maximum likelihood estimation for mixture models
and some other density estimation and regression methods based on convex
optimization.
Author: Roger Koenker [aut, cre],
Jiaying Gu [ctb],
Ivan Mizera [ctb]
Maintainer: Roger Koenker <rkoenker@uiuc.edu>
Diff between REBayes versions 0.61 dated 2016-01-09 and 0.62 dated 2016-02-02
DESCRIPTION | 7 +++-- MD5 | 66 +++++++++++++++++++++++++++------------------------ NAMESPACE | 2 - R/Norberg.R |only R/Pmix.R | 61 ++++++++++++++++++++++++++++++++--------------- R/Weibullmix.R | 17 ++++++++++--- R/medde.R | 15 +++++------ data/Norberg.rda |only inst/ChangeLog | 13 ++++++++++ inst/doc |only man/Bmix.Rd | 12 ++++----- man/Cosslett.Rd | 10 +++---- man/GLmix.Rd | 18 ++++++------- man/GVmix.Rd | 14 +++++----- man/Gammamix.Rd | 14 +++++----- man/Gompertzmix.Rd | 16 ++++++------ man/KWDual.Rd | 10 +++---- man/L1norm.Rd | 4 ++- man/Norberg.Rd |only man/Pmix.Rd | 32 +++++++++++++++++------- man/TLmix.Rd | 12 ++++----- man/Tncpmix.Rd | 18 ++++++------- man/WGLVmix.Rd | 16 ++++++------ man/WGVmix.Rd | 2 - man/WTLVmix.Rd | 18 ++++++------- man/Weibullmix.Rd | 19 +++++++------- man/bball.Rd | 16 ++++++------ man/flies.Rd | 10 +++---- man/medde.Rd | 15 ++++++----- man/plot.medde.Rd | 2 - man/predict.GLmix.Rd | 2 - man/qmedde.Rd | 2 - man/rmedde.Rd | 2 - man/tacks.Rd | 12 ++++----- man/tannenbaum.Rd | 2 - man/traprule.Rd | 2 - 36 files changed, 265 insertions(+), 196 deletions(-)
Title: Quantile Classifier
Description: Code for centroid, median and quantile classifiers.
Author: Christian Hennig, Cinzia Viroli
Maintainer: Cinzia Viroli <cinzia.viroli@unibo.it>
Diff between quantileDA versions 1.0 dated 2015-10-03 and 1.1 dated 2016-02-02
DESCRIPTION | 8 +- MD5 | 6 - R/quantilecl.R | 163 +++++++++++++++++++++++++++--------------------------- man/quantileCV.Rd | 14 ++-- 4 files changed, 96 insertions(+), 95 deletions(-)
Title: Visualizing and Analyzing Animal Track Data
Description: Contains functions to access movement data stored in movebank.org as well as tools to visualize and statistically analyze animal movement data, among others functions to calculate dynamic Brownian Bridge Movement Models. Move helps addressing movement ecology questions.
Author: Bart Kranstauber <bart.kranstauber@uni-konstanz.de>, Marco Smolla <marco.smolla@postgrad.manchester.ac.uk>
Maintainer: Bart Kranstauber <bart.kranstauber@uni-konstanz.de>
Diff between move versions 1.5.514 dated 2015-07-07 and 1.6.539 dated 2016-02-02
move-1.5.514/move/inst/extdata/ricky.csv.gz |only move-1.6.539/move/ChangeLog | 68 ++ move-1.6.539/move/DESCRIPTION | 12 move-1.6.539/move/MD5 | 193 +++---- move-1.6.539/move/NAMESPACE | 10 move-1.6.539/move/R/AAClass.R | 22 move-1.6.539/move/R/WebImport.R | 37 - move-1.6.539/move/R/brownianbridgedyn.R | 9 move-1.6.539/move/R/corridor.R | 9 move-1.6.539/move/R/move.R | 18 move-1.6.539/move/R/moveStack.R | 5 move-1.6.539/move/R/plotBursts.R | 99 ++- move-1.6.539/move/R/seglength.R | 2 move-1.6.539/move/R/spatialLines.R | 21 move-1.6.539/move/R/split.R | 6 move-1.6.539/move/R/turnAngle.R | 7 move-1.6.539/move/R/unUsedRecords.R | 11 move-1.6.539/move/build/vignette.rds |binary move-1.6.539/move/data |only move-1.6.539/move/inst/doc/browseMovebank.pdf |binary move-1.6.539/move/inst/doc/move.R | 8 move-1.6.539/move/inst/doc/move.Rnw | 8 move-1.6.539/move/inst/doc/move.pdf |binary move-1.6.539/move/inst/extdata/createsRDataFile.R | 6 move-1.6.539/move/man/DBBMM-class.Rd | 2 move-1.6.539/move/man/MovebankLogin-class.Rd | 11 move-1.6.539/move/man/angle.Rd | 8 move-1.6.539/move/man/as.data.frame.Rd | 8 move-1.6.539/move/man/brownian.bridge.dyn.Rd | 9 move-1.6.539/move/man/brownian.motion.variance.dyn.Rd | 8 move-1.6.539/move/man/burst.Rd | 6 move-1.6.539/move/man/burstId.Rd | 7 move-1.6.539/move/man/citations.Rd | 9 move-1.6.539/move/man/contour.Rd | 3 move-1.6.539/move/man/coordinates.Rd | 8 move-1.6.539/move/man/corridor.Rd | 120 ++-- move-1.6.539/move/man/distance.Rd | 9 move-1.6.539/move/man/dynBGB-methods.Rd | 5 move-1.6.539/move/man/equalProj.Rd | 6 move-1.6.539/move/man/fishers.Rd |only move-1.6.539/move/man/getMotionVariance.Rd | 5 move-1.6.539/move/man/getMovebankAnimals.Rd | 3 move-1.6.539/move/man/getMovebankData.Rd | 6 move-1.6.539/move/man/getMovebankID.Rd | 7 move-1.6.539/move/man/getMovebankSensorAttributes.Rd | 3 move-1.6.539/move/man/getMovebankSensors.Rd | 3 move-1.6.539/move/man/getMovebankStudies.Rd | 4 move-1.6.539/move/man/getMovebankStudy.Rd | 2 move-1.6.539/move/man/getVolumeUD.Rd | 4 move-1.6.539/move/man/hrBootstrap.Rd | 5 move-1.6.539/move/man/idData.Rd | 4 move-1.6.539/move/man/interpolateTime.Rd | 4 move-1.6.539/move/man/leroy.Rd | 7 move-1.6.539/move/man/lines.Rd | 10 move-1.6.539/move/man/move.Rd | 17 move-1.6.539/move/man/move2ade.Rd | 9 move-1.6.539/move/man/moveStack.Rd | 8 move-1.6.539/move/man/movebankLogin.Rd | 6 move-1.6.539/move/man/n.indiv.Rd | 9 move-1.6.539/move/man/n.locs.Rd | 8 move-1.6.539/move/man/outerProbability.Rd | 3 move-1.6.539/move/man/plot.Rd | 25 move-1.6.539/move/man/plotBursts.Rd | 6 move-1.6.539/move/man/points.Rd | 8 move-1.6.539/move/man/raster.Rd | 5 move-1.6.539/move/man/raster2contour.Rd | 9 move-1.6.539/move/man/ricky.Rd | 4 move-1.6.539/move/man/seglength.Rd | 11 move-1.6.539/move/man/sensor.Rd | 8 move-1.6.539/move/man/spTransform.Rd | 8 move-1.6.539/move/man/speed.Rd | 12 move-1.6.539/move/man/split.Rd | 7 move-1.6.539/move/man/subset.Rd | 15 move-1.6.539/move/man/summary.Rd | 10 move-1.6.539/move/man/time.Rd | 11 move-1.6.539/move/man/timeLag.Rd | 10 move-1.6.539/move/man/timestamps.Rd | 12 move-1.6.539/move/man/trackId.Rd | 5 move-1.6.539/move/man/turnAngleGc.Rd | 6 move-1.6.539/move/man/udData.Rd |only move-1.6.539/move/man/unUsedRecords.Rd | 8 move-1.6.539/move/tests/test-all.R | 4 move-1.6.539/move/tests/testthat/Rplots.pdf |only move-1.6.539/move/tests/testthat/test.brownian.bridge.dyn.R | 329 ++++++++---- move-1.6.539/move/tests/testthat/test.burst.R | 4 move-1.6.539/move/tests/testthat/test.dBGB.R | 12 move-1.6.539/move/tests/testthat/test.extentCalc.R | 16 move-1.6.539/move/tests/testthat/test.idData.R | 18 move-1.6.539/move/tests/testthat/test.interpolateTime.R | 5 move-1.6.539/move/tests/testthat/test.measures.R | 9 move-1.6.539/move/tests/testthat/test.move.R | 126 ++-- move-1.6.539/move/tests/testthat/test.moveAde.R | 27 move-1.6.539/move/tests/testthat/test.moveStack.R | 6 move-1.6.539/move/tests/testthat/test.smallFunctions.R | 102 ++- move-1.6.539/move/tests/testthat/test.spTransform.R | 8 move-1.6.539/move/tests/testthat/test.storedData.R | 11 move-1.6.539/move/tests/testthat/test.unUsed.R |only move-1.6.539/move/vignettes/move.Rnw | 8 98 files changed, 1053 insertions(+), 709 deletions(-)
Title: Identify Similar Cases for Qualitative Case Studies
Description: Allows users to identify similar cases for qualitative case studies using statistical matching methods.
Author: Rich Nielsen
Maintainer: Rich Nielsen <rnielsen@mit.edu>
Diff between caseMatch versions 1.0.1 dated 2014-09-05 and 1.0.5 dated 2016-02-02
DESCRIPTION | 12 +- MD5 | 8 - NAMESPACE | 2 R/case.match.R | 324 +++++++++++++++++++++++++++++++++++++++++++++--------- man/case.match.Rd | 12 +- 5 files changed, 291 insertions(+), 67 deletions(-)
Title: Feed-Forward Neural Networks and Multinomial Log-Linear Models
Description: Software for feed-forward neural networks with a single
hidden layer, and for multinomial log-linear models.
Author: Brian Ripley [aut, cre, cph],
William Venables [cph]
Maintainer: Brian Ripley <ripley@stats.ox.ac.uk>
Diff between nnet versions 7.3-11 dated 2015-08-30 and 7.3-12 dated 2016-02-02
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/vcovmultinom.R | 12 ++++++------ inst/NEWS | 2 +- src/nnet.c | 3 ++- 5 files changed, 17 insertions(+), 16 deletions(-)
Title: Load Census TIGER/Line Shapefiles into R
Description: Download TIGER/Line shapefiles from the United States Census Bureau
and load into R as 'SpatialDataFrame' objects.
Author: Kyle Walker [aut, cre],
Bob Rudis [ctb]
Maintainer: Kyle Walker <kyle.walker@tcu.edu>
Diff between tigris versions 0.1 dated 2015-10-11 and 0.2 dated 2016-02-02
DESCRIPTION | 10 ++++----- MD5 | 13 ++++++------ NEWS |only R/enumeration_units.R | 26 ++++++++++++++++++------- R/helpers.R | 52 +++++++++++++++++++++++++++++++++++++++++++++++--- README.md | 50 +++++++++++++++++++++++++----------------------- man/blocks.Rd | 7 +++--- man/geo_join.Rd | 33 ++++++++++++++++++++++++++++++- 8 files changed, 143 insertions(+), 48 deletions(-)
Title: Statistical Modeling
Description: A collection of algorithms and functions to aid statistical modeling. Includes growth curve comparisons, limiting dilution analysis (aka ELDA), mixed linear models, heteroscedastic regression, inverse-Gaussian probability calculations, Gauss quadrature and a secure convergence algorithm for nonlinear models. Includes advanced generalized linear model functions that implement secure convergence, dispersion modeling and Tweedie power-law families.
Author: Gordon Smyth [cre, aut], Yifang Hu [ctb], Peter Dunn [ctb], Belinda Phipson [ctb], Yunshun Chen [ctb]
Maintainer: Gordon Smyth <smyth@wehi.edu.au>
Diff between statmod versions 1.4.23 dated 2016-01-05 and 1.4.24 dated 2016-02-02
DESCRIPTION | 8 +-- MD5 | 14 ++--- NAMESPACE | 4 - R/invgauss.R | 120 ++++++++++++++++++++++++++++++------------------- inst/NEWS | 26 +++++++++- man/gauss.quad.Rd | 10 ++-- man/gauss.quad.prob.Rd | 7 +- man/invgauss.Rd | 23 ++++++--- 8 files changed, 137 insertions(+), 75 deletions(-)
Title: Java Executable .jar Files for 'RKEEL'
Description: KEEL is a popular Java software for a large number of different knowledge data discovery tasks. Furthermore, 'RKEEL' is a package with a R code layer between R and KEEL, for using KEEL in R code. This package downloads and install the .jar files necessary for 'RKEEL' algorithms execution. For more information about KEEL, see <http://www.keel.es/>.
Author: Jose Moyano [aut, cre], Luciano Sanchez Ramos [aut]
Maintainer: Jose Moyano <i02momuj@uco.es>
Diff between RKEELjars versions 1.0.9 dated 2016-01-31 and 1.0.11 dated 2016-02-02
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/getExePath.R | 14 +++++++------- R/zzz.R | 26 ++++++++++++++++++-------- 4 files changed, 32 insertions(+), 22 deletions(-)
Title: Using Keel in R Code
Description: KEEL is a popular Java software for a large number of different knowledge data discovery tasks.
This package takes the advantages of KEEL and R, allowing to use KEEL algorithms in simple R code.
The implemented R code layer between R and KEEL makes easy both using KEEL algorithms in R as implementing new algorithms for 'RKEEL' in a very simple way.
It includes more than 100 algorithms for classification, regression and preprocess, which allows a more complete experimentation process.
For more information about KEEL, see <http://www.keel.es/>.
Author: Jose Moyano [aut, cre], Luciano Sanchez Ramos [aut]
Maintainer: Jose Moyano <i02momuj@uco.es>
Diff between RKEEL versions 1.1.5 dated 2016-01-31 and 1.1.6 dated 2016-02-02
DESCRIPTION | 11 MD5 | 14 - R/ClassificationAlgorithm.R | 7 R/KeelAlgorithm.R | 175 +++++++------- R/KeelUtils.R | 5 R/PreprocessAlgorithm.R | 493 +++++++++++++++++++++-------------------- R/RegressionAlgorithm.R | 517 ++++++++++++++++++++++---------------------- man/Nominal2Binary-TR.Rd | 4 8 files changed, 621 insertions(+), 605 deletions(-)
Title: Interface to the Global 'Biodiversity' Information Facility
'API'
Description: A programmatic interface to the Web Service methods
provided by the Global Biodiversity Information Facility ('GBIF').
'GBIF' is a database of species occurrence records from sources all
over the globe. 'rgbif' includes functions for searching for
taxonomic names, retrieving information on data providers,
getting species occurrence records, and getting counts of
occurrence records.
Author: Scott Chamberlain [aut, cre],
Karthik Ram [aut],
Vijay Barve [aut],
Dan Mcglinn [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rgbif versions 0.9.0 dated 2015-11-25 and 0.9.2 dated 2016-02-02
rgbif-0.9.0/rgbif/man/commas_to_periods.Rd |only rgbif-0.9.0/rgbif/man/datasetparser.Rd |only rgbif-0.9.0/rgbif/man/gbif_capwords.Rd |only rgbif-0.9.0/rgbif/man/gbifparser.Rd |only rgbif-0.9.0/rgbif/man/gbifparser_verbatim.Rd |only rgbif-0.9.0/rgbif/man/namelkupparser.Rd |only rgbif-0.9.0/rgbif/man/parseresults.Rd |only rgbif-0.9.2/rgbif/DESCRIPTION | 24 - rgbif-0.9.2/rgbif/LICENSE | 2 rgbif-0.9.2/rgbif/MD5 | 76 ++-- rgbif-0.9.2/rgbif/NAMESPACE | 22 - rgbif-0.9.2/rgbif/R/bbox.R |only rgbif-0.9.2/rgbif/R/elevation.r | 8 rgbif-0.9.2/rgbif/R/gbif_citation.R | 8 rgbif-0.9.2/rgbif/R/gbif_issues.R |only rgbif-0.9.2/rgbif/R/name_backbone.r | 22 - rgbif-0.9.2/rgbif/R/name_lookup.r | 6 rgbif-0.9.2/rgbif/R/name_suggest.r | 25 - rgbif-0.9.2/rgbif/R/name_usage.r | 15 rgbif-0.9.2/rgbif/R/occ_data.R |only rgbif-0.9.2/rgbif/R/occ_download.R | 7 rgbif-0.9.2/rgbif/R/occ_download_get.r | 2 rgbif-0.9.2/rgbif/R/occ_download_import.R | 5 rgbif-0.9.2/rgbif/R/occ_download_list.R | 2 rgbif-0.9.2/rgbif/R/occ_download_meta.R | 4 rgbif-0.9.2/rgbif/R/occ_issues.r | 13 rgbif-0.9.2/rgbif/R/occ_search.r | 253 ------------- rgbif-0.9.2/rgbif/R/parsenames.R | 9 rgbif-0.9.2/rgbif/R/pipe.R |only rgbif-0.9.2/rgbif/R/rgbif-package.r | 5 rgbif-0.9.2/rgbif/R/taxrank.R |only rgbif-0.9.2/rgbif/R/zzz.r | 376 ++++---------------- rgbif-0.9.2/rgbif/build/vignette.rds |binary rgbif-0.9.2/rgbif/man/gbif_bbox2wkt.Rd | 2 rgbif-0.9.2/rgbif/man/gbif_issues.Rd | 2 rgbif-0.9.2/rgbif/man/isocodes.Rd | 4 rgbif-0.9.2/rgbif/man/name_backbone.Rd | 2 rgbif-0.9.2/rgbif/man/occ_data.Rd |only rgbif-0.9.2/rgbif/man/occ_download_import.Rd | 3 rgbif-0.9.2/rgbif/man/occ_search.Rd | 18 rgbif-0.9.2/rgbif/man/pipe.Rd | 2 rgbif-0.9.2/rgbif/man/taxrank.Rd | 2 rgbif-0.9.2/rgbif/tests/testthat/test-name_lookup.r | 6 rgbif-0.9.2/rgbif/tests/testthat/test-name_usage.r | 17 rgbif-0.9.2/rgbif/tests/testthat/test-occ_data.R |only rgbif-0.9.2/rgbif/tests/testthat/test-parsenames.r | 8 46 files changed, 253 insertions(+), 697 deletions(-)
Title: Tools for Analysis, Design, and Operation of Water Supply
Storages
Description: Measure single-storage water supply system performance using resilience,
reliability, and vulnerability metrics; assess storage-yield-reliability
relationships; determine no-fail storage with sequent peak analysis; optimize
release decisions for water supply, hydropower, and multi-objective reservoirs
using deterministic and stochastic dynamic programming; evaluate inflow
persistence using the Hurst coefficient.
Author: Sean Turner [aut, cre],
Jia Yi Ng [aut],
Stefano Galelli [aut]
Maintainer: Sean Turner <swd.turner@gmail.com>
Diff between reservoir versions 1.1.1 dated 2016-01-11 and 1.1.3 dated 2016-02-02
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- R/dp_hydro.R | 6 +++--- R/dp_multi.R | 2 +- R/dp_supply.R | 2 +- R/sdp_hydro.R | 23 +++++++++++++++++------ R/sdp_multi.R | 13 ++++++------- R/sdp_supply.R | 11 +++++------ R/sequent_peak_analysis.R | 2 +- R/sry_storage.R | 2 +- R/sry_yield.R | 2 +- 11 files changed, 49 insertions(+), 40 deletions(-)
Title: Regularization Paths for Huber Loss Regression and Quantile
Regression Penalized by Lasso or Elastic-Net
Description: Efficient algorithms for fitting entire regularization paths for Huber loss regression and quantile regression penalized by lasso or elastic-net.
Author: Congrui Yi
Maintainer: Congrui Yi <congrui-yi@uiowa.edu>
Diff between hqreg versions 1.0 dated 2015-09-11 and 1.1 dated 2016-02-02
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 6 +++++- R/loss.hqreg.R | 2 +- 4 files changed, 13 insertions(+), 9 deletions(-)
Title: Meridional and Parallel Lines for Maps
Description: Create graticule lines and labels for maps. Control the creation
of lines by setting their placement (at particular meridians and parallels)
and extent (along parallels and meridians). Labels are created independently of
lines.
Author: Michael D. Sumner [aut, cre]
Maintainer: Michael D. Sumner <mdsumner@gmail.com>
Diff between graticule versions 0.1.0 dated 2015-08-19 and 0.1.2 dated 2016-02-02
ChangeLog |only DESCRIPTION | 14 MD5 | 38 +- NAMESPACE | 54 +- NEWS | 44 +- R/graticule.R | 377 ++++++++++---------- R/pathos.R | 81 ++-- R/utils.R | 16 README.md | 47 +- build/vignette.rds |binary inst/doc/graticule.R | 268 +++++++------- inst/doc/graticule.Rmd | 466 ++++++++++++------------- inst/doc/graticule.html | 762 +++++++++++++++-------------------------- inst/extdata/getice.R | 6 inst/polymesh.R |only man/graticule.Rd | 149 ++++---- man/graticule_labels.Rd | 72 +-- man/pathologicule.Rd | 81 ++-- tests/testthat.R | 4 tests/testthat/testgraticule.R | 26 - vignettes/graticule.Rmd | 466 ++++++++++++------------- 21 files changed, 1408 insertions(+), 1563 deletions(-)
Title: Efficiently Using Gaussian Processes with Rcpp and RcppEigen
Description: Contains Rcpp and RcppEigen implementations of matrix operations useful for Gaussian process models, such as the inversion of a symmetric Toeplitz matrix, sampling from multivariate normal distributions, evaluation of the log-density of a multivariate normal vector, and Bayesian inference for latent variable Gaussian process models with elliptical slice sampling (Murray, Adams, and MacKay 2010).
Author: Giri Gopalan, Luke Bornn
Maintainer: Giri Gopalan <gopalan88@gmail.com>
Diff between FastGP versions 1.1.2 dated 2015-10-25 and 1.2 dated 2016-02-02
DESCRIPTION | 10 +++++----- MD5 | 17 +++++++++-------- R/RcppExports.R | 8 ++++++++ R/rcpp_mvn.R | 18 +++++++++++++++++- demo/FastGPdemo.R | 2 +- inst |only man/rcpp_matrix_ops.Rd | 6 +++++- man/rcpp_rmvnorm.Rd | 2 ++ src/RcppExports.cpp | 22 ++++++++++++++++++++++ src/rcppeigen.cpp | 12 ++++++++++++ 10 files changed, 81 insertions(+), 16 deletions(-)
Title: Fast and Versatile Argument Checks
Description: Tests and assertions to perform frequent argument checks. A
substantial part of the package was written in C to minimize any worries
about execution time overhead.
Author: Michel Lang <michellang@gmail.com>,
Bernd Bischl <bernd_bischl@gmx.net>
Maintainer: Michel Lang <michellang@gmail.com>
Diff between checkmate versions 1.7.0 dated 2016-01-23 and 1.7.1 dated 2016-02-02
DESCRIPTION | 6 +- MD5 | 94 ++++++++++++++++++++-------------------- R/checkArray.r | 6 +- R/checkAtomic.r | 6 +- R/checkAtomicVector.r | 6 +- R/checkClass.r | 2 R/checkComplex.r | 6 +- R/checkCount.r | 6 +- R/checkFlag.r | 6 +- R/checkInt.r | 6 +- R/checkInteger.r | 6 +- R/checkIntegerish.r | 6 +- R/checkLogical.r | 6 +- R/checkMatrix.r | 6 +- R/checkNamed.r | 8 +-- R/checkNames.r | 6 +- R/checkNumber.r | 8 +-- R/checkNumeric.r | 6 +- R/checkPathForOutput.r | 4 - R/checkScalar.r | 6 +- R/checkSetEqual.r | 2 R/checkString.r | 6 +- R/checkSubset.r | 2 R/checkVector.r | 6 +- R/makeAssertion.r | 13 +++-- R/makeExpectation.r | 13 +++-- R/makeTest.r | 12 +++-- R/qassert.r | 9 ++- R/qassertr.r | 14 ++++-- inst/NEWS.md | 6 ++ inst/README.md | 2 inst/doc/checkmate.R | 2 inst/doc/checkmate.Rmd | 6 +- inst/doc/checkmate.html | 97 ++++++++++++++++++++++-------------------- man/checkClass.Rd | 4 - man/checkNamed.Rd | 2 man/checkNumber.Rd | 4 - man/checkPathForOutput.Rd | 4 - man/checkSetEqual.Rd | 4 - man/checkSubset.Rd | 4 - man/makeAssertion.Rd | 7 ++- man/makeExpectation.Rd | 7 ++- man/makeTest.Rd | 7 ++- man/qassert.Rd | 9 ++- man/qassertr.Rd | 9 +++ src/qassert.c | 5 +- tests/testthat/test_qassert.r | 31 +++++++++---- vignettes/checkmate.Rmd | 6 +- 48 files changed, 284 insertions(+), 215 deletions(-)