Title: Using V-algorithm and Newton-Raphson Method to Obtain
Multiple-objective Optimal Design
Description: Using V-algorithm and Newton-Raphson method to obtain multiple-objective optimal design for estimating the shape of dose-response, the ED50 (the dose producing an effect midway between the expected responses at the extreme doses) and the MED (the minimum effective dose level) for the 2,3,4-parameter logistic models and for evaluating its efficiencies for the three objectives.
Author: Seung Won Hyun, Weng Kee Wong, and Yarong Yang
Maintainer: Yarong Yang <Yarong.Yang@ndsu.edu>
Diff between VNM versions 4.0 dated 2015-02-09 and 4.1 dated 2016-02-10
DESCRIPTION | 20 +-- MD5 | 38 +++-- NAMESPACE | 4 R/Deff.R | 290 ++++++++++---------------------------------- R/MOPT.R | 342 +++++++++-------------------------------------------- R/RcppExports.R |only R/S.Weight.R | 193 ++--------------------------- R/ceff1.R | 299 ++++++++++------------------------------------ R/ceff2.R | 318 ++++++++++--------------------------------------- R/ff.R |only R/plot-methods.R | 8 - man/Deff.Rd | 2 man/MOPT.Rd | 2 man/OPT-class.Rd | 2 man/PAR-class.Rd | 2 man/S.Weight.Rd | 2 man/SW-class.Rd | 2 man/VNM-package.Rd | 6 man/ceff1.Rd | 2 man/ceff2.Rd | 7 - src |only 21 files changed, 326 insertions(+), 1213 deletions(-)
More information about titrationCurves at CRAN
Permanent link
Title: R Interface to the PX-Web/PC-Axis API
Description: Generic interface for the PX-Web/PC-Axis API. The PX-Web/PC-Axis
API is used by organizations such as Statistics Sweden and Statistics
Finland to disseminate data. The R package can interact with all
PX-Web/PC-Axis APIs to fetch information about the data hierarchy, extract
metadata and extract and parse statistics to R data.frame format. PX-Web is
a solution to disseminate PC-Axis data files in dynamic tables on the web.
Since 2013 PX-Web contains an API to disseminate PC-Axis files.
Author: Mans Magnusson, Leo Lahti, Love Hansson
Maintainer: Mans Magnusson <mons.magnusson@gmail.com>
Diff between pxweb versions 0.5.57 dated 2015-07-14 and 0.6.0 dated 2016-02-10
DESCRIPTION | 13 +-- MD5 | 114 ++++++++++++++++---------------- NAMESPACE | 2 R/api_catalogue.R | 13 +++ R/api_parameters.R | 5 + R/base_url.R | 3 R/get_pxweb_data.R | 6 - R/get_pxweb_data_internal.R | 6 + R/get_pxweb_dims.R | 3 R/get_pxweb_levels.R | 3 R/get_pxweb_metadata.R | 3 R/interactive_pxweb_internal.R | 13 ++- R/pxweb_api_class.R | 1 R/test_pxweb_api.R | 2 R/test_pxweb_api_internal.R | 7 + R/todo.R | 5 + R/utils_internal.R | 15 ++++ build/vignette.rds |binary inst/extdata/api.json | 68 ++++++++++++++++++- man/api_catalogue.Rd | 5 - man/api_parameters.Rd | 3 man/api_timer.Rd | 3 man/base_url.Rd | 4 - man/buildPath.Rd | 3 man/calc_dim_type.Rd | 3 man/calculate_data_dim.Rd | 5 - man/checkForLevels.Rd | 3 man/check_new_pxweb_apis.Rd | 3 man/choose_pxweb_api.Rd | 3 man/choose_pxweb_database_url.Rd | 3 man/clean_pxweb.Rd | 5 - man/create_batch_list.Rd | 7 + man/deparseLevels.Rd | 3 man/download_pxweb.Rd | 5 - man/findData.input.Rd | 3 man/getContent.Rd | 3 man/get_api_index.Rd | 3 man/get_api_list.Rd | 3 man/get_api_list_remote.Rd | 3 man/get_dim_size.Rd | 5 - man/get_github_api_urls.Rd | 3 man/get_pxweb_data.Rd | 8 +- man/get_pxweb_dims.Rd | 3 man/get_pxweb_levels.Rd | 3 man/get_pxweb_metadata.Rd | 3 man/interactive_pxweb.Rd | 4 - man/print.api_parameters.Rd | 3 man/pxweb.Rd | 2 man/pxweb_api-class.Rd | 6 + man/reorder_and_check_dims.Rd | 3 man/test_pxweb_api.Rd | 5 - man/test_pxweb_api_get_data.Rd | 3 man/test_pxweb_api_get_node_metadata.Rd | 3 man/test_pxweb_api_get_nodes.Rd | 5 - man/text_to_url.Rd | 3 man/update_pxweb_apis.Rd | 2 man/write_api_list.Rd | 3 vignettes/pxweb.Rmd | 18 ++--- 58 files changed, 306 insertions(+), 134 deletions(-)
Title: Estimation for Multivariate Normal and Student-t Data with
Monotone Missingness
Description: Estimation of multivariate normal and student-t data of
arbitrary dimension where the pattern of missing data is monotone.
Through the use of parsimonious/shrinkage regressions
(plsr, pcr, lasso, ridge, etc.), where standard regressions fail,
the package can handle a nearly arbitrary amount of missing data.
The current version supports maximum likelihood inference and
a full Bayesian approach employing scale-mixtures for Gibbs sampling.
Monotone data augmentation extends this
Bayesian approach to arbitrary missingness patterns.
A fully functional standalone interface to the Bayesian lasso
(from Park & Casella), Normal-Gamma (from Griffin & Brown),
Horseshoe (from Carvalho, Polson, & Scott), and ridge regression
with model selection via Reversible Jump, and student-t errors
(from Geweke) is also provided.
Author: Robert B. Gramacy <rbgramacy@chicagobooth.edu>
Maintainer: Robert B. Gramacy <rbgramacy@chicagobooth.edu>
Diff between monomvn versions 1.9-5 dated 2014-05-21 and 1.9-6 dated 2016-02-10
ChangeLog | 12 +++++++ DESCRIPTION | 20 +++++------ MD5 | 62 ++++++++++++++++++------------------ NAMESPACE | 9 ++++- R/default.QP.R | 4 -- R/randmvn.R | 4 -- R/regress.pls.R | 3 + data/cement.rda |binary man/blasso.Rd | 10 ++--- man/blasso.s3.Rd | 2 - man/bmonomvn.Rd | 2 - man/cement.Rd | 2 - man/metrics.Rd | 2 - man/monomvn-internal.Rd | 3 - man/monomvn-package.Rd | 2 - man/monomvn.Rd | 6 +-- man/monomvn.s3.Rd | 2 - man/plot.monomvn.Rd | 2 - man/regress.Rd | 2 - man/returns.Rd | 2 - man/rmono.Rd | 2 - src/Makevars | 4 +- src/blasso.cc | 42 ++++++++++++------------ src/bmonomvn.cc | 19 +++++------ src/bmonomvn.h | 2 - src/hshoe.c | 34 +++++++++---------- src/matrix.c | 82 ++++++++++++++++++++++++------------------------ src/matrix.h | 4 +- src/nu.c | 8 ++-- src/rhelp.c | 32 +++++++++--------- src/rhelp.h | 22 +++++++----- src/ustructs.cc | 26 +++++++-------- 32 files changed, 221 insertions(+), 207 deletions(-)
Title: Provide the 'x13ashtml' Seasonal Adjustment Binary
Description: The US Census provides a seasonal adjustment program now
called 'X-13ARIMA-SEATS' building on both earlier Census programs called
X-11 and X-12 as well as the SEATS program by the Bank of Spain. Census
offers both source and binary versions -- which this package integrates
for use by other R packages.
Author: Dirk Eddelbuettel and Christoph Sax
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between x13binary versions 0.1.0 dated 2016-01-19 and 0.1.1 dated 2016-02-10
ChangeLog | 17 +++++++++++++++++ DESCRIPTION | 9 +++++---- MD5 | 8 ++++---- R/checkX13binary.R | 26 ++++++++++++++++++++++++-- README.md | 11 ++++++++++- 5 files changed, 60 insertions(+), 11 deletions(-)
Title: Tree Ring Analysis of Disturbance Events in R
Description: Tree Ring Analysis of Disturbance Events in R (TRADER) package provides only one way for disturbance reconstruction from tree-ring data.
Author: Pavel Fibich <pavel.fibich@prf.jcu.cz>, Jan Altman <altman.jan@gmail.com>, Tuomas Aakala <tuomas.aakala@helsinki.fi>, Jiri Dolezal <jiriddolezal@gmail.com>
Maintainer: Pavel Fibich <pavel.fibich@prf.jcu.cz>
Diff between TRADER versions 1.2-0 dated 2015-11-20 and 1.2-1 dated 2016-02-10
DESCRIPTION | 8 +++--- MD5 | 6 ++-- R/trader.R | 63 ++++++++++++++++++++++++++++++++++++++++---------- man/TRADER-package.Rd | 4 +-- 4 files changed, 60 insertions(+), 21 deletions(-)
Title: Download Regularly Maintained Political Science Data Sets
Description: This R package includes functions for gathering commonly used and
regularly maintained data set in political science. It also includes
functions for combining components from these data sets into variables that
have been suggested in the literature, but are not regularly maintained.
Author: Christopher Gandrud
Maintainer: Christopher Gandrud <christopher.gandrud@gmail.com>
Diff between psData versions 0.1.2 dated 2014-02-23 and 0.2 dated 2016-02-10
psData-0.1.2/psData/build |only psData-0.1.2/psData/inst |only psData-0.1.2/psData/vignettes/psData_tutorial.Rmd |only psData-0.2/psData/DESCRIPTION | 21 psData-0.2/psData/MD5 | 38 - psData-0.2/psData/NAMESPACE | 11 psData-0.2/psData/NEWS | 45 + psData-0.2/psData/R/Getters.R | 528 ++++++++++++++++------ psData-0.2/psData/R/utils.R | 174 ++++--- psData-0.2/psData/README.md | 79 +-- psData-0.2/psData/data/countrycode_data.rda |binary psData-0.2/psData/man/CountryID.Rd | 66 +- psData-0.2/psData/man/DDGet.Rd |only psData-0.2/psData/man/DpiGet.Rd | 79 +-- psData-0.2/psData/man/DropNA.psData.Rd | 20 psData-0.2/psData/man/IMF_WBGet.Rd |only psData-0.2/psData/man/PolityGet.Rd | 69 +- psData-0.2/psData/man/RRCrisisGet.Rd | 75 +-- psData-0.2/psData/man/WinsetCreator.Rd | 76 --- psData-0.2/psData/man/countrycode_data.Rd | 75 +-- psData-0.2/psData/vignettes/psData_tutorial.R |only psData-0.2/psData/vignettes/psData_tutorial.html |only psData-0.2/psData/vignettes/psData_tutorial.md |only 23 files changed, 855 insertions(+), 501 deletions(-)
Title: Multiple Imputation for Multivariate Panel or Clustered Data
Description: Multiple imputation for multivariate panel or clustered data.
Author: Original by Joseph L. Schafer
Maintainer: Jing hua Zhao <jinghua.zhao@mrc-epid.cam.ac.uk>
Diff between pan versions 1.3 dated 2015-02-10 and 1.4 dated 2016-02-10
ChangeLog | 13 ++++++++----- DESCRIPTION | 11 +++++------ INDEX |only MD5 | 21 ++++++++++++--------- build/vignette.rds |binary data/YWC.data.rda |only data/datalist | 1 + inst/doc/pan-tr.Rnw | 4 ++-- inst/doc/pan-tr.pdf |binary man/YWC.data.Rd |only man/pan.Rd | 20 ++++++++++---------- src/pan.f | 2 +- vignettes/pan-tr.Rnw | 4 ++-- 13 files changed, 41 insertions(+), 35 deletions(-)
Title: Genetic Data Manipulation (Quality Control, GRM and LD
Computations, PCA), Linear Mixed Models (AIREML Algorithm),
Association Testing
Description: Manipulation of genetic data (SNPs), computation of Genetic Relationship Matrix, Linkage Disequilibrium, etc. Efficient algorithms for Linear Mixed Model (AIREML, diagonalization trick).
Author: Hervé Perdry & Claire Dandine-Roulland
Maintainer: Hervé Perdry <herve.perdry@u-psud.fr>
Diff between gaston versions 1.3.1 dated 2015-12-14 and 1.4 dated 2016-02-10
DESCRIPTION | 13 -- MD5 | 130 +++++++++++--------- NAMESPACE | 5 NEWS | 6 R/bm.r | 65 +++++----- R/bm_as_bm.r |only R/bm_bind.r | 54 ++++---- R/bm_files.r | 230 +++++++++++++++++++------------------ R/bm_grm.r | 19 ++- R/bm_ld_thinner.r | 54 ++++---- R/bm_product.r | 139 +++++++++++----------- R/bm_select.r | 24 +-- R/bm_stats.r | 184 +++++++++++++++-------------- R/bm_subsetting.r | 254 +++++++++++++++++++++-------------------- R/lmm_aireml.r | 152 ++++++++++++------------ R/lmm_diago.r | 112 +++++++++--------- data/AGT.rda |binary data/LCT.rda |binary data/TTN.rda |binary inst/doc/gaston.R | 121 +++++++++++-------- inst/doc/gaston.Rnw | 98 ++++++++++----- inst/doc/gaston.pdf |binary man/GRM.Rd | 3 man/LD.Rd | 1 man/LD.thin.Rd | 1 man/as.bed.matrix.Rd |only man/association.test.Rd | 3 man/bed.loadings.Rd | 2 man/bed.matrix-class.Rd | 19 +-- man/gaston-package.Rd | 4 man/lik.contour.Rd | 2 man/lmm.aireml.Rd | 3 man/lmm.diago.Rd | 2 man/lmm.diago.likelihood.Rd | 2 man/reshape.GRM.Rd |only man/select.inds.Rd | 1 man/select.snps.Rd | 1 man/set.hwe.Rd | 3 man/set.stats.Rd | 11 + src/gwas_lmm_diago_lrt.cpp | 4 src/gwas_lmm_diago_lrt_mt.cpp | 8 - src/gwas_lmm_diago_wald.cpp | 4 src/gwas_lmm_diago_wald_mt.cpp | 8 - src/hwe.cpp | 9 + src/hwe_chi.cpp | 7 - src/isnullptr.cpp |only src/m4_bed.cpp | 36 ++--- src/m4_conversion.cpp | 12 - src/m4_kinship.cpp | 8 - src/m4_kinship_p.cpp | 8 - src/m4_ld.cpp | 12 - src/m4_ldthin_left.cpp | 2 src/m4_ldthin_right.cpp | 2 src/m4_prod2_ms.cpp | 2 src/m4_prod2_p.cpp | 2 src/m4_prod_ms.cpp | 2 src/m4_prod_p.cpp | 2 src/m4_read_vcf.cpp | 16 +- src/m4_stats.cpp | 10 - src/m4_transpose.cpp | 4 src/matrix-varia.cpp | 2 src/matrix4.cpp | 20 +-- src/matrix4.h | 27 ++-- vignettes/gaston-015.pdf |only vignettes/gaston-026.pdf |only vignettes/gaston-030.pdf |only vignettes/gaston-037.pdf |only vignettes/gaston-045.pdf |only vignettes/gaston-051.pdf |only vignettes/gaston-052.pdf |only vignettes/gaston.Rnw | 98 ++++++++++----- vignettes/lapin |only 72 files changed, 1103 insertions(+), 920 deletions(-)
Title: Vulgar Fractions in R
Description: The main function of this package allows numerical vector objects to
be displayed with their values in vulgar fractional form. This is convenient if
patterns can then be more easily detected. In some cases replacing the components
of a numeric vector by a rational approximation can also be expected to remove
some component of round-off error. The main functions form a re-implementation
of the functions 'fractions' and 'rational' of the MASS package, but using a
radically improved programming strategy.
Author: Bill Venables
Maintainer: Bill Venables <bill.venables@gmail.com>
Diff between fractional versions 0.1.1 dated 2016-02-08 and 0.1.2 dated 2016-02-10
DESCRIPTION | 16 ++++++++-------- MD5 | 4 ++-- vignettes/Vulgar_Fractions_in_R.Rmd | 2 +- 3 files changed, 11 insertions(+), 11 deletions(-)
Title: Extending R's Dendrogram Functionality
Description: Offers a set of functions for extending
dendrogram objects in R, letting you visualize and compare trees of
hierarchical clusterings. You can (1) Adjust a tree's graphical parameters
- the color, size, type, etc of its branches, nodes and labels. (2)
Visually and statistically compare different dendrograms to one another.
Author: Tal Galili [aut, cre, cph] (http://www.r-statistics.com),
Gavin Simpson [ctb],
Gregory Jefferis [aut, ctb] (imported code from his dendroextras
package),
Marco Gallotta [ctb] (a.k.a: marcog),
Johan Renaudie [ctb] (https://github.com/plannapus),
The R Core Team [ctb] (Thanks for the Infastructure, and code in the
examples),
Kurt Hornik [ctb],
Uwe Ligges [ctb],
Andrej-Nikolai Spiess [ctb],
Steve Horvath [ctb],
Peter Langfelder [ctb],
skullkey [ctb],
Mark Van Der Loo [ctb] (https://github.com/markvanderloo d3dendrogram),
Andrie de Vries [ctb] (ggdendro author),
Zuguang Gu [ctb] (circlize author),
Yoav Benjamini [ths]
Maintainer: Tal Galili <tal.galili@gmail.com>
Diff between dendextend versions 1.1.2 dated 2015-10-31 and 1.1.8 dated 2016-02-10
dendextend-1.1.2/dendextend/inst/tests |only dendextend-1.1.8/dendextend/ChangeLog |14576 +++++----- dendextend-1.1.8/dendextend/DESCRIPTION | 24 dendextend-1.1.8/dendextend/MD5 | 379 dendextend-1.1.8/dendextend/NAMESPACE | 3 dendextend-1.1.8/dendextend/NEWS | 52 dendextend-1.1.8/dendextend/R/attr_access.R | 5 dendextend-1.1.8/dendextend/R/bk_method.R | 3 dendextend-1.1.8/dendextend/R/color_branches.R | 16 dendextend-1.1.8/dendextend/R/colored_bars.R | 273 dendextend-1.1.8/dendextend/R/cor_bakers_gamma.R | 1 dendextend-1.1.8/dendextend/R/cor_cophenetic.R | 3 dendextend-1.1.8/dendextend/R/cutree.dendrogram.R | 30 dendextend-1.1.8/dendextend/R/dendextend_options.R | 2 dendextend-1.1.8/dendextend/R/dendlist.R | 2 dendextend-1.1.8/dendextend/R/dist_long.R | 1 dendextend-1.1.8/dendextend/R/distinct_edges.R | 3 dendextend-1.1.8/dendextend/R/get_nodes_xy.R | 3 dendextend-1.1.8/dendextend/R/labels.R | 1 dendextend-1.1.8/dendextend/R/labels_colors.R | 50 dendextend-1.1.8/dendextend/R/nleaves.R | 1 dendextend-1.1.8/dendextend/R/prune.R | 5 dendextend-1.1.8/dendextend/R/pvclust.R | 6 dendextend-1.1.8/dendextend/R/rotate.R | 2 dendextend-1.1.8/dendextend/R/unbranch.R | 7 dendextend-1.1.8/dendextend/R/zzz.R | 2 dendextend-1.1.8/dendextend/TODO | 39 dendextend-1.1.8/dendextend/build/vignette.rds |binary dendextend-1.1.8/dendextend/inst/CITATION | 4 dendextend-1.1.8/dendextend/inst/doc/Cluster_Analysis.html | 12 dendextend-1.1.8/dendextend/inst/doc/FAQ.R | 40 dendextend-1.1.8/dendextend/inst/doc/FAQ.Rmd | 49 dendextend-1.1.8/dendextend/inst/doc/FAQ.html | 57 dendextend-1.1.8/dendextend/inst/doc/Quick_Introduction.html | 14 dendextend-1.1.8/dendextend/inst/doc/introduction.R | 4 dendextend-1.1.8/dendextend/inst/doc/introduction.Rmd | 4 dendextend-1.1.8/dendextend/inst/doc/introduction.html | 88 dendextend-1.1.8/dendextend/man/Bk.Rd | 19 dendextend-1.1.8/dendextend/man/Bk_permutations.Rd | 19 dendextend-1.1.8/dendextend/man/Bk_plot.Rd | 37 dendextend-1.1.8/dendextend/man/DendSer.dendrogram.Rd | 4 dendextend-1.1.8/dendextend/man/FM_index.Rd | 17 dendextend-1.1.8/dendextend/man/FM_index_R.Rd | 13 dendextend-1.1.8/dendextend/man/FM_index_permutation.Rd | 9 dendextend-1.1.8/dendextend/man/FM_index_profdpm.Rd | 15 dendextend-1.1.8/dendextend/man/all.equal.dendrogram.Rd | 9 dendextend-1.1.8/dendextend/man/all_couple_rotations_at_k.Rd | 5 dendextend-1.1.8/dendextend/man/all_unique.Rd | 6 dendextend-1.1.8/dendextend/man/as.dendlist.Rd | 4 dendextend-1.1.8/dendextend/man/as.phylo.dendrogram.Rd | 8 dendextend-1.1.8/dendextend/man/as_hclust_fixed.Rd | 10 dendextend-1.1.8/dendextend/man/assign_dendextend_options.Rd | 2 dendextend-1.1.8/dendextend/man/assign_values_to_branches_edgePar.Rd | 7 dendextend-1.1.8/dendextend/man/assign_values_to_leaves_edgePar.Rd | 6 dendextend-1.1.8/dendextend/man/assign_values_to_leaves_nodePar.Rd | 10 dendextend-1.1.8/dendextend/man/assign_values_to_nodes_nodePar.Rd | 22 dendextend-1.1.8/dendextend/man/bakers_gamma_for_2_k_matrix.Rd | 2 dendextend-1.1.8/dendextend/man/branches_attr_by_clusters.Rd | 15 dendextend-1.1.8/dendextend/man/branches_attr_by_labels.Rd | 16 dendextend-1.1.8/dendextend/man/circlize_dendrogram.Rd | 9 dendextend-1.1.8/dendextend/man/click_rotate.Rd | 7 dendextend-1.1.8/dendextend/man/collapse_branch.Rd | 7 dendextend-1.1.8/dendextend/man/color_branches.Rd | 62 dendextend-1.1.8/dendextend/man/color_labels.Rd | 14 dendextend-1.1.8/dendextend/man/color_unique_labels.Rd |only dendextend-1.1.8/dendextend/man/colored_bars.Rd | 97 dendextend-1.1.8/dendextend/man/common_subtrees_clusters.Rd | 5 dendextend-1.1.8/dendextend/man/cor.dendlist.Rd | 9 dendextend-1.1.8/dendextend/man/cor_FM_index.Rd | 4 dendextend-1.1.8/dendextend/man/cor_bakers_gamma.Rd | 36 dendextend-1.1.8/dendextend/man/cor_common_nodes.Rd | 8 dendextend-1.1.8/dendextend/man/cor_cophenetic.Rd | 40 dendextend-1.1.8/dendextend/man/count_terminal_nodes.Rd | 10 dendextend-1.1.8/dendextend/man/cut_lower_fun.Rd | 8 dendextend-1.1.8/dendextend/man/cutree-methods.Rd | 87 dendextend-1.1.8/dendextend/man/cutree_1h.dendrogram.Rd | 18 dendextend-1.1.8/dendextend/man/cutree_1k.dendrogram.Rd | 30 dendextend-1.1.8/dendextend/man/d3dendro_options.Rd | 8 dendextend-1.1.8/dendextend/man/d3dendrogram.Rd | 8 dendextend-1.1.8/dendextend/man/dend_diff.Rd | 14 dendextend-1.1.8/dendextend/man/dendextend-package.Rd | 2 dendextend-1.1.8/dendextend/man/dendextend_labels.dendrogram.Rd | 4 dendextend-1.1.8/dendextend/man/dendextend_options.Rd | 4 dendextend-1.1.8/dendextend/man/dendlist.Rd | 8 dendextend-1.1.8/dendextend/man/dist.dendlist.Rd | 14 dendextend-1.1.8/dendextend/man/dist_long.Rd | 5 dendextend-1.1.8/dendextend/man/distinct_edges.Rd | 6 dendextend-1.1.8/dendextend/man/duplicate_leaf.Rd | 4 dendextend-1.1.8/dendextend/man/entanglement.Rd | 27 dendextend-1.1.8/dendextend/man/fac2num.Rd | 4 dendextend-1.1.8/dendextend/man/fix_members_attr.dendrogram.Rd | 5 dendextend-1.1.8/dendextend/man/flatten.dendrogram.Rd | 4 dendextend-1.1.8/dendextend/man/flip_leaves.Rd | 3 dendextend-1.1.8/dendextend/man/get_branches_heights.Rd | 6 dendextend-1.1.8/dendextend/man/get_childrens_heights.Rd | 9 dendextend-1.1.8/dendextend/man/get_leaves_attr.Rd | 18 dendextend-1.1.8/dendextend/man/get_leaves_branches_attr.Rd | 8 dendextend-1.1.8/dendextend/man/get_leaves_branches_col.Rd | 12 dendextend-1.1.8/dendextend/man/get_leaves_edgePar.Rd | 5 dendextend-1.1.8/dendextend/man/get_leaves_nodePar.Rd | 7 dendextend-1.1.8/dendextend/man/get_nodes_attr.Rd | 29 dendextend-1.1.8/dendextend/man/get_nodes_xy.Rd | 18 dendextend-1.1.8/dendextend/man/get_root_branches_attr.Rd | 4 dendextend-1.1.8/dendextend/man/ggdend.Rd | 43 dendextend-1.1.8/dendextend/man/hang.dendrogram.Rd | 13 dendextend-1.1.8/dendextend/man/heights_per_k.dendrogram.Rd | 17 dendextend-1.1.8/dendextend/man/highlight_distinct_edges.Rd | 28 dendextend-1.1.8/dendextend/man/identify.dendrogram.Rd | 23 dendextend-1.1.8/dendextend/man/intersect_trees.Rd | 5 dendextend-1.1.8/dendextend/man/is.dendlist.Rd | 4 dendextend-1.1.8/dendextend/man/is.dendrogram.Rd | 4 dendextend-1.1.8/dendextend/man/is.hclust.Rd | 4 dendextend-1.1.8/dendextend/man/is.natural.number.Rd | 3 dendextend-1.1.8/dendextend/man/is.phylo.Rd | 4 dendextend-1.1.8/dendextend/man/is_null_list.Rd | 6 dendextend-1.1.8/dendextend/man/khan.Rd | 40 dendextend-1.1.8/dendextend/man/labels-assign.Rd | 22 dendextend-1.1.8/dendextend/man/labels_cex.Rd | 5 dendextend-1.1.8/dendextend/man/labels_colors.Rd | 10 dendextend-1.1.8/dendextend/man/ladderize.Rd | 8 dendextend-1.1.8/dendextend/man/leaf_Colors.Rd | 5 dendextend-1.1.8/dendextend/man/lowest_common_branch.Rd | 4 dendextend-1.1.8/dendextend/man/match_order_by_labels.Rd | 4 dendextend-1.1.8/dendextend/man/match_order_dendrogram_by_old_order.Rd | 12 dendextend-1.1.8/dendextend/man/na_locf.Rd | 8 dendextend-1.1.8/dendextend/man/nleaves.Rd | 16 dendextend-1.1.8/dendextend/man/nnodes.Rd | 4 dendextend-1.1.8/dendextend/man/noded_with_condition.Rd | 9 dendextend-1.1.8/dendextend/man/order.dendrogram-assign.Rd | 5 dendextend-1.1.8/dendextend/man/order.hclust.Rd | 14 dendextend-1.1.8/dendextend/man/partition_leaves.Rd | 4 dendextend-1.1.8/dendextend/man/pipe.Rd | 8 dendextend-1.1.8/dendextend/man/plot_horiz.dendrogram.Rd | 26 dendextend-1.1.8/dendextend/man/prune.Rd | 2 dendextend-1.1.8/dendextend/man/prune_common_subtrees.dendlist.Rd | 6 dendextend-1.1.8/dendextend/man/prune_leaf.Rd | 8 dendextend-1.1.8/dendextend/man/pvclust_show_signif.Rd | 10 dendextend-1.1.8/dendextend/man/pvclust_show_signif_gradient.Rd | 14 dendextend-1.1.8/dendextend/man/raise.dendrogram.Rd | 4 dendextend-1.1.8/dendextend/man/rank_branches.Rd | 13 dendextend-1.1.8/dendextend/man/rank_order.dendrogram.Rd | 6 dendextend-1.1.8/dendextend/man/rank_values_with_clusters.Rd | 5 dendextend-1.1.8/dendextend/man/rect.dendrogram.Rd | 33 dendextend-1.1.8/dendextend/man/remove_branches_edgePar.Rd | 4 dendextend-1.1.8/dendextend/man/remove_leaves_nodePar.Rd | 4 dendextend-1.1.8/dendextend/man/remove_nodes_nodePar.Rd | 4 dendextend-1.1.8/dendextend/man/rllply.Rd | 10 dendextend-1.1.8/dendextend/man/rotate.Rd | 61 dendextend-1.1.8/dendextend/man/rotate_DendSer.Rd | 2 dendextend-1.1.8/dendextend/man/sample.dendrogram.Rd | 16 dendextend-1.1.8/dendextend/man/set.Rd | 97 dendextend-1.1.8/dendextend/man/shuffle.Rd | 8 dendextend-1.1.8/dendextend/man/sort_2_clusters_vectors.Rd | 11 dendextend-1.1.8/dendextend/man/sort_dist_mat.Rd | 6 dendextend-1.1.8/dendextend/man/sort_levels_values.Rd | 16 dendextend-1.1.8/dendextend/man/tanglegram.Rd | 46 dendextend-1.1.8/dendextend/man/theme_dendro.Rd | 4 dendextend-1.1.8/dendextend/man/unbranch.Rd | 4 dendextend-1.1.8/dendextend/man/unclass_dend.Rd | 12 dendextend-1.1.8/dendextend/man/untangle.Rd | 12 dendextend-1.1.8/dendextend/man/untangle_DendSer.Rd | 2 dendextend-1.1.8/dendextend/man/untangle_random_search.Rd | 17 dendextend-1.1.8/dendextend/man/untangle_step_rotate_1side.Rd | 23 dendextend-1.1.8/dendextend/man/untangle_step_rotate_2side.Rd | 19 dendextend-1.1.8/dendextend/man/which_leaf.Rd | 6 dendextend-1.1.8/dendextend/man/which_node.Rd | 7 dendextend-1.1.8/dendextend/tests/test-all.R | 13 dendextend-1.1.8/dendextend/tests/testthat |only dendextend-1.1.8/dendextend/vignettes/FAQ.Rmd | 49 dendextend-1.1.8/dendextend/vignettes/disabled/dendextend-tutorial.rnw | 4 dendextend-1.1.8/dendextend/vignettes/introduction.Rmd | 4 171 files changed, 9281 insertions(+), 8342 deletions(-)
More information about codingMatrices at CRAN
Permanent link
Title: Two Dimensional Change-Points Detection
Description: Segments a matrix in blocks with constant values.
Author: Julien Chiquet [aut, cre],
Vincent Brault [aut]
Maintainer: Julien Chiquet <julien.chiquet@gmail.com>
Diff between blockseg versions 0.1 dated 2016-01-15 and 0.2 dated 2016-02-10
DESCRIPTION | 8 - MD5 | 16 +- R/blockseg.R | 2 R/stabsel-class.R | 251 +++++++++++++++++++++------------------------- R/stabsel.R | 2 man/blockSeg-proc.Rd | 2 man/evolution.Rd | 9 - man/plot.stab.blockSeg.Rd | 13 +- man/stab.blockSeg.Rd | 4 9 files changed, 147 insertions(+), 160 deletions(-)
Title: R Graphics Output in LaTeX Format
Description: Provides a graphics output device for R that records plots
in a LaTeX-friendly format. The device transforms plotting
commands issued by R functions into LaTeX code blocks. When
included in a LaTeX document, these blocks are interpreted with
the help of 'TikZ'---a graphics package for TeX and friends
written by Till Tantau. Using the 'tikzDevice', the text of R
plots can contain LaTeX commands such as mathematical formula.
The device also allows arbitrary LaTeX code to be inserted into
the output stream.
Author: Charlie Sharpsteen [aut],
Cameron Bracken [aut],
Kirill Müller [ctb, cre],
Yihui Xie [ctb]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between tikzDevice versions 0.10 dated 2016-02-06 and 0.10-1 dated 2016-02-10
DESCRIPTION | 8 +-- MD5 | 22 +++++----- NEWS.md | 6 ++ inst/doc/tikzDevice.pdf |binary src/tikzDevice.c | 2 vignettes/figs/annotation.tex | 86 +++++++++++++++++----------------------- vignettes/figs/latexEx.tex | 80 ++++++++++++++++++------------------- vignettes/figs/pdf-example.pdf |binary vignettes/figs/simpleEx.tex | 2 vignettes/figs/tikz-example.tex | 2 vignettes/figs/titlePlot.tex | 2 vignettes/figs/westCoast.tex | 2 12 files changed, 103 insertions(+), 109 deletions(-)
Title: Tools for Analysis, Design, and Operation of Water Supply
Storages
Description: Measure single-storage water supply system performance using resilience,
reliability, and vulnerability metrics; assess storage-yield-reliability
relationships; determine no-fail storage with sequent peak analysis; optimize
release decisions for water supply, hydropower, and multi-objective reservoirs
using deterministic and stochastic dynamic programming; evaluate inflow
persistence using the Hurst coefficient.
Author: Sean Turner [aut, cre],
Jia Yi Ng [aut],
Stefano Galelli [aut]
Maintainer: Sean Turner <swd.turner@gmail.com>
Diff between reservoir versions 1.1.3 dated 2016-02-02 and 1.1.4 dated 2016-02-10
DESCRIPTION | 6 +++--- MD5 | 38 +++++++++++++++++++------------------- R/dp_hydro.R | 5 ++--- R/dp_multi.R | 5 ++--- R/dp_supply.R | 5 ++--- R/reservoir.R | 15 ++++++--------- R/sdp.R | 6 +----- R/sdp_hydro.R | 3 +-- R/sdp_multi.R | 3 +-- R/sdp_supply.R | 3 +-- R/simres.R | 2 +- man/dp_hydro.Rd | 5 ++--- man/dp_multi.Rd | 5 ++--- man/dp_supply.Rd | 5 ++--- man/reservoir.Rd | 15 ++++++--------- man/sdp.Rd | 6 ------ man/sdp_hydro.Rd | 3 +-- man/sdp_multi.Rd | 3 +-- man/sdp_supply.Rd | 3 +-- man/simRes.Rd | 2 +- 20 files changed, 55 insertions(+), 83 deletions(-)
Title: Client for Various 'CrossRef' 'APIs'
Description: Client for various 'CrossRef' 'APIs', including 'metadata' search
with their old and newer search 'APIs', get 'citations' in various formats
(including 'bibtex', 'citeproc-json', 'rdf-xml', etc.), convert 'DOIs'
to 'PMIDs', and 'vice versa', get citations for 'DOIs', and get links to
full text of articles when available.
Author: Scott Chamberlain [aut, cre],
Carl Boettiger [aut],
Ted Hart [aut],
Karthik Ram [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rcrossref versions 0.5.0 dated 2016-01-20 and 0.5.2 dated 2016-02-10
rcrossref-0.5.0/rcrossref/R/defunct.R |only rcrossref-0.5.0/rcrossref/man/pmid2doi.Rd |only rcrossref-0.5.2/rcrossref/DESCRIPTION | 10 rcrossref-0.5.2/rcrossref/MD5 | 79 ++-- rcrossref-0.5.2/rcrossref/NAMESPACE | 8 rcrossref-0.5.2/rcrossref/NEWS.md |only rcrossref-0.5.2/rcrossref/R/cr_citation.R |only rcrossref-0.5.2/rcrossref/R/cr_citation_count.r | 13 rcrossref-0.5.2/rcrossref/R/cr_cn.r | 19 - rcrossref-0.5.2/rcrossref/R/cr_ft_text.R | 33 - rcrossref-0.5.2/rcrossref/R/cr_fundref.r | 44 +- rcrossref-0.5.2/rcrossref/R/cr_journals.r | 16 rcrossref-0.5.2/rcrossref/R/cr_members.r | 19 - rcrossref-0.5.2/rcrossref/R/cr_search.r | 45 +- rcrossref-0.5.2/rcrossref/R/cr_search2.r | 10 rcrossref-0.5.2/rcrossref/R/cr_search_free.r | 9 rcrossref-0.5.2/rcrossref/R/cr_works.R | 17 rcrossref-0.5.2/rcrossref/R/crosscite.R | 12 rcrossref-0.5.2/rcrossref/R/deprecated_defunct.R |only rcrossref-0.5.2/rcrossref/R/get_styles.R | 8 rcrossref-0.5.2/rcrossref/R/id_converter.R | 4 rcrossref-0.5.2/rcrossref/R/pmid2doi.R | 48 -- rcrossref-0.5.2/rcrossref/R/rcrossref-package.R | 10 rcrossref-0.5.2/rcrossref/R/zzz.R | 54 ++- rcrossref-0.5.2/rcrossref/README.md | 19 - rcrossref-0.5.2/rcrossref/inst/doc/crossref_vignette.Rmd | 174 +++++----- rcrossref-0.5.2/rcrossref/inst/doc/crossref_vignette.html | 174 +++++----- rcrossref-0.5.2/rcrossref/inst/vign/crossref_vignette.md | 174 +++++----- rcrossref-0.5.2/rcrossref/man/cr_citation-defunct.Rd | 2 rcrossref-0.5.2/rcrossref/man/cr_ft_text.Rd | 7 rcrossref-0.5.2/rcrossref/man/cr_search.Rd | 3 rcrossref-0.5.2/rcrossref/man/crosscite.Rd | 6 rcrossref-0.5.2/rcrossref/man/pmid2doi-defunct.Rd |only rcrossref-0.5.2/rcrossref/man/rcrossref-defunct.Rd | 10 rcrossref-0.5.2/rcrossref/man/rcrossref-deprecated.Rd |only rcrossref-0.5.2/rcrossref/man/rcrossref-package.Rd | 4 rcrossref-0.5.2/rcrossref/tests/testthat/test_cr_cn.R | 12 rcrossref-0.5.2/rcrossref/tests/testthat/test_cr_fundref.R | 2 rcrossref-0.5.2/rcrossref/tests/testthat/test_cr_journals.R | 7 rcrossref-0.5.2/rcrossref/tests/testthat/test_cr_members.R | 6 rcrossref-0.5.2/rcrossref/tests/testthat/test_cr_search.R | 26 - rcrossref-0.5.2/rcrossref/tests/testthat/test_cr_search_free.R | 22 - rcrossref-0.5.2/rcrossref/tests/testthat/test_cr_works.R | 2 rcrossref-0.5.2/rcrossref/vignettes/crossref_vignette.Rmd | 174 +++++----- 44 files changed, 675 insertions(+), 607 deletions(-)
Title: Compares the Distribution of Sister Clades Through a Phylogeny
Description: An implementation of the nodiv algorithm, see Borregaard, M.K., Rahbek, C., Fjeldsaa, J., Parra, J.L., Whittaker, R.J. & Graham, C.H. 2014. Node-based analysis of species distributions. Methods in Ecology and Evolution 5(11): 1225-1235. <DOI:10.1111/2041-210X.12283>. Package for phylogenetic analysis of species distributions. The main function goes through each node in the phylogeny, compares the distributions of the two descendant nodes, and compares the result to a null model. This highlights nodes where major distributional divergence have occurred. The distributional divergence for these nodes is mapped using the SOS statistic.
Author: Michael Krabbe Borregaard
Maintainer: Michael Krabbe Borregaard <mkborregaard@snm.ku.dk>
Diff between nodiv versions 1.1.3 dated 2016-02-07 and 1.1.4 dated 2016-02-10
DESCRIPTION | 10 ++--- MD5 | 8 ++-- R/Add_to_data_object.R | 82 +++++++++++++++++-------------------------- R/Methods_for_data_objects.R | 3 + man/nodiv-package.Rd | 4 +- 5 files changed, 47 insertions(+), 60 deletions(-)
Title: Generalized Method of Wavelet Moments
Description: Generalized Method of Wavelet Moments (GMWM) is an estimation
technique for the parameters of time series models. It uses the wavelet variance
in a moment matching approach that makes it particularly suitable for the
estimation of certain state-space models. Furthermore, there exists a robust
implementation of GMWM, which allows the robust estimation of some state-space
models and ARIMA models. Lastly, the package provides the ability to quickly
generate time series data, perform different wavelet decompositions, and
visualizations.
Author: James Balamuta [aut, cph],
Stephane Guerrier [ctb, cre, cph],
Roberto Molinari [ctb, cph],
Wenchao Yang [ctb]
Maintainer: Stephane Guerrier <stephane@illinois.edu>
Diff between gmwm versions 1.0.0 dated 2015-11-06 and 2.0.0 dated 2016-02-10
gmwm-1.0.0/gmwm/R/multiplot.R |only gmwm-1.0.0/gmwm/R/options.R |only gmwm-1.0.0/gmwm/man/multiplot.Rd |only gmwm-1.0.0/gmwm/man/print.gmwm_modwt.Rd |only gmwm-1.0.0/gmwm/man/summary.gmwm_modwt.Rd |only gmwm-1.0.0/gmwm/man/wvar.imu.Rd |only gmwm-1.0.0/gmwm/vignettes/FirstDemo.R |only gmwm-1.0.0/gmwm/vignettes/FirstDemoInst.Rmd |only gmwm-1.0.0/gmwm/vignettes/analytical_derivatives.Rmd |only gmwm-1.0.0/gmwm/vignettes/analytical_derivatives.nb |only gmwm-1.0.0/gmwm/vignettes/arma_bs.R |only gmwm-1.0.0/gmwm/vignettes/simulation_stability.R |only gmwm-2.0.0/gmwm/DESCRIPTION | 29 gmwm-2.0.0/gmwm/MD5 | 292 +-- gmwm-2.0.0/gmwm/NAMESPACE | 45 gmwm-2.0.0/gmwm/R/GMWM.R | 857 +++++----- gmwm-2.0.0/gmwm/R/GMWM_package.R | 24 gmwm-2.0.0/gmwm/R/RcppExports.R | 271 ++- gmwm-2.0.0/gmwm/R/avar.r | 60 gmwm-2.0.0/gmwm/R/data_install.R | 25 gmwm-2.0.0/gmwm/R/dwt.R |only gmwm-2.0.0/gmwm/R/gts.R | 271 ++- gmwm-2.0.0/gmwm/R/imu.R | 834 +++++---- gmwm-2.0.0/gmwm/R/lts.R | 285 ++- gmwm-2.0.0/gmwm/R/misc.R |only gmwm-2.0.0/gmwm/R/model_selection_methods.R | 191 +- gmwm-2.0.0/gmwm/R/modwt.R | 82 gmwm-2.0.0/gmwm/R/onload.R | 34 gmwm-2.0.0/gmwm/R/ts.model.R | 66 gmwm-2.0.0/gmwm/R/update.R |only gmwm-2.0.0/gmwm/R/utilities.R |only gmwm-2.0.0/gmwm/R/wvar.R | 378 ++-- gmwm-2.0.0/gmwm/R/wvcov.R | 27 gmwm-2.0.0/gmwm/build |only gmwm-2.0.0/gmwm/inst |only gmwm-2.0.0/gmwm/man/AR.Rd | 2 gmwm-2.0.0/gmwm/man/AR1.Rd | 4 gmwm-2.0.0/gmwm/man/ARMA.Rd | 2 gmwm-2.0.0/gmwm/man/DR.Rd | 2 gmwm-2.0.0/gmwm/man/GM.Rd |only gmwm-2.0.0/gmwm/man/MA.Rd | 2 gmwm-2.0.0/gmwm/man/QN.Rd | 2 gmwm-2.0.0/gmwm/man/RW.Rd | 2 gmwm-2.0.0/gmwm/man/WN.Rd | 2 gmwm-2.0.0/gmwm/man/ar1_to_gm.Rd |only gmwm-2.0.0/gmwm/man/auto.imu.Rd | 34 gmwm-2.0.0/gmwm/man/autoplot.auto.imu.Rd | 2 gmwm-2.0.0/gmwm/man/autoplot.gmwm.Rd | 5 gmwm-2.0.0/gmwm/man/autoplot.gts.Rd | 3 gmwm-2.0.0/gmwm/man/autoplot.imu2.Rd |only gmwm-2.0.0/gmwm/man/autoplot.imu6.Rd | 2 gmwm-2.0.0/gmwm/man/autoplot.lts.Rd | 15 gmwm-2.0.0/gmwm/man/autoplot.wvar.imu.Rd | 38 gmwm-2.0.0/gmwm/man/avar.Rd | 49 gmwm-2.0.0/gmwm/man/avar_mo_cpp.Rd | 1 gmwm-2.0.0/gmwm/man/avar_to_cpp.Rd | 1 gmwm-2.0.0/gmwm/man/batch_modwt_wvar_cpp.Rd |only gmwm-2.0.0/gmwm/man/brick_wall.Rd | 7 gmwm-2.0.0/gmwm/man/brickwall.Rd |only gmwm-2.0.0/gmwm/man/ci_eta3.Rd | 7 gmwm-2.0.0/gmwm/man/ci_eta3_robust.Rd | 7 gmwm-2.0.0/gmwm/man/ci_wave_variance.Rd | 7 gmwm-2.0.0/gmwm/man/compare.models.Rd | 25 gmwm-2.0.0/gmwm/man/compare.wvar.Rd | 2 gmwm-2.0.0/gmwm/man/create_imu.Rd |only gmwm-2.0.0/gmwm/man/create_wvar.Rd |only gmwm-2.0.0/gmwm/man/demo.lts.Rd | 19 gmwm-2.0.0/gmwm/man/dwt.Rd |only gmwm-2.0.0/gmwm/man/dwt_cpp.Rd | 7 gmwm-2.0.0/gmwm/man/field_to_matrix.Rd | 1 gmwm-2.0.0/gmwm/man/gen.gts.Rd | 49 gmwm-2.0.0/gmwm/man/gen.lts.Rd | 30 gmwm-2.0.0/gmwm/man/getModel.gmwm.Rd | 2 gmwm-2.0.0/gmwm/man/ggColor.Rd | 2 gmwm-2.0.0/gmwm/man/gm_conv.Rd |only gmwm-2.0.0/gmwm/man/gm_to_ar1.Rd |only gmwm-2.0.0/gmwm/man/gmwm-package.Rd | 17 gmwm-2.0.0/gmwm/man/gmwm.Rd | 60 gmwm-2.0.0/gmwm/man/gmwm.imu.Rd | 58 gmwm-2.0.0/gmwm/man/gmwm_update_cpp.Rd | 8 gmwm-2.0.0/gmwm/man/gts.Rd | 35 gmwm-2.0.0/gmwm/man/guess_initial.Rd | 12 gmwm-2.0.0/gmwm/man/guess_initial_old.Rd |only gmwm-2.0.0/gmwm/man/has.Rd |only gmwm-2.0.0/gmwm/man/imu.Rd | 58 gmwm-2.0.0/gmwm/man/install_imudata.Rd | 15 gmwm-2.0.0/gmwm/man/is_func.Rd |only gmwm-2.0.0/gmwm/man/lts.Rd | 29 gmwm-2.0.0/gmwm/man/model_objdesc.Rd | 2 gmwm-2.0.0/gmwm/man/model_process_desc.Rd | 2 gmwm-2.0.0/gmwm/man/model_theta.Rd | 2 gmwm-2.0.0/gmwm/man/modwt.Rd | 17 gmwm-2.0.0/gmwm/man/modwt_cpp.Rd | 10 gmwm-2.0.0/gmwm/man/modwt_wvar_cpp.Rd |only gmwm-2.0.0/gmwm/man/orderModel.Rd |only gmwm-2.0.0/gmwm/man/output.format.Rd | 5 gmwm-2.0.0/gmwm/man/packageVersionCRAN.Rd |only gmwm-2.0.0/gmwm/man/paperSetting.Rd | 2 gmwm-2.0.0/gmwm/man/placeLegend.Rd | 2 gmwm-2.0.0/gmwm/man/plot.auto.imu.Rd | 2 gmwm-2.0.0/gmwm/man/plot.gts.Rd | 3 gmwm-2.0.0/gmwm/man/plot.lts.Rd | 15 gmwm-2.0.0/gmwm/man/plot.wvar.imu.Rd | 33 gmwm-2.0.0/gmwm/man/print.dwt.Rd |only gmwm-2.0.0/gmwm/man/print.gmwm.Rd |only gmwm-2.0.0/gmwm/man/print.modwt.Rd |only gmwm-2.0.0/gmwm/man/print.summary.gmwm.Rd | 2 gmwm-2.0.0/gmwm/man/print.wvcov.Rd | 4 gmwm-2.0.0/gmwm/man/print_data.Rd |only gmwm-2.0.0/gmwm/man/rank.models.Rd | 22 gmwm-2.0.0/gmwm/man/read.imu.Rd |only gmwm-2.0.0/gmwm/man/read_imu.Rd | 1 gmwm-2.0.0/gmwm/man/sub-.imu.Rd |only gmwm-2.0.0/gmwm/man/sum_field_vec.Rd | 1 gmwm-2.0.0/gmwm/man/summary.avar.Rd | 2 gmwm-2.0.0/gmwm/man/summary.dwt.Rd |only gmwm-2.0.0/gmwm/man/summary.gmwm.Rd | 6 gmwm-2.0.0/gmwm/man/summary.modwt.Rd |only gmwm-2.0.0/gmwm/man/summary.wvcov.Rd | 4 gmwm-2.0.0/gmwm/man/times-.ts.model.Rd | 2 gmwm-2.0.0/gmwm/man/unitConversion.Rd | 6 gmwm-2.0.0/gmwm/man/update.gmwm.Rd | 35 gmwm-2.0.0/gmwm/man/update.lts.Rd |only gmwm-2.0.0/gmwm/man/update_obj.Rd |only gmwm-2.0.0/gmwm/man/value.Rd |only gmwm-2.0.0/gmwm/man/wave_variance.Rd | 6 gmwm-2.0.0/gmwm/man/wvar.Rd | 55 gmwm-2.0.0/gmwm/man/wvar_cpp.Rd | 15 gmwm-2.0.0/gmwm/man/wvcov.Rd | 6 gmwm-2.0.0/gmwm/src/RcppExports.cpp | 122 + gmwm-2.0.0/gmwm/src/additional_moments.cpp | 1 gmwm-2.0.0/gmwm/src/allan_variance.cpp | 6 gmwm-2.0.0/gmwm/src/analytical_matrix_derivatives.cpp | 6 gmwm-2.0.0/gmwm/src/arima_gmwm.cpp | 12 gmwm-2.0.0/gmwm/src/armadillo_manipulations.cpp | 24 gmwm-2.0.0/gmwm/src/automatic_models.cpp | 19 gmwm-2.0.0/gmwm/src/bootstrappers.cpp | 37 gmwm-2.0.0/gmwm/src/complex_tools.cpp | 1 gmwm-2.0.0/gmwm/src/covariance_matrix.cpp | 1 gmwm-2.0.0/gmwm/src/dwt.cpp | 68 gmwm-2.0.0/gmwm/src/dwt.h | 15 gmwm-2.0.0/gmwm/src/gen_process.cpp | 26 gmwm-2.0.0/gmwm/src/gmwm_logic.cpp | 26 gmwm-2.0.0/gmwm/src/gmwm_logic.h | 25 gmwm-2.0.0/gmwm/src/guess_values.cpp | 316 +++ gmwm-2.0.0/gmwm/src/guess_values.h | 10 gmwm-2.0.0/gmwm/src/inference.cpp | 2 gmwm-2.0.0/gmwm/src/model_selection.cpp | 2 gmwm-2.0.0/gmwm/src/obj_mod.cpp | 1 gmwm-2.0.0/gmwm/src/objective_functions.cpp | 40 gmwm-2.0.0/gmwm/src/polyroot.cpp | 1 gmwm-2.0.0/gmwm/src/process_to_wv.cpp | 6 gmwm-2.0.0/gmwm/src/read_imu.cpp | 4 gmwm-2.0.0/gmwm/src/rtoarmadillo.cpp | 2 gmwm-2.0.0/gmwm/src/sampler.cpp | 1 gmwm-2.0.0/gmwm/src/summary_inf_mod.cpp | 3 gmwm-2.0.0/gmwm/src/transform_data.cpp | 160 - gmwm-2.0.0/gmwm/src/ts_checks.cpp | 4 gmwm-2.0.0/gmwm/src/ts_model_cpp.cpp | 89 - gmwm-2.0.0/gmwm/src/wave_variance.cpp | 168 + gmwm-2.0.0/gmwm/src/wave_variance.h | 14 gmwm-2.0.0/gmwm/src/wv_filters.cpp | 3 gmwm-2.0.0/gmwm/vignettes/Analytical-Derivatives-for-Haar-Wavelet-Variance.Rmd |only gmwm-2.0.0/gmwm/vignettes/Loading-and-Modeling-IMUs.Rmd |only gmwm-2.0.0/gmwm/vignettes/Manipulating-gmwm-Object-Types.Rmd |only gmwm-2.0.0/gmwm/vignettes/Quick-Start-Guide.Rmd |only 166 files changed, 3828 insertions(+), 2045 deletions(-)
Title: Provides Tests and Graphics for Assessing Tests of Equivalence
Description: Provides statistical tests and graphics for assessing tests
of equivalence. Such tests have similarity as the alternative
hypothesis instead of the null. Sample data sets are included.
Author: Andrew Robinson <A.Robinson@ms.unimelb.edu.au>
Maintainer: Andrew Robinson <A.Robinson@ms.unimelb.edu.au>
Diff between equivalence versions 0.7.0 dated 2015-07-25 and 0.7.1 dated 2016-02-10
ChangeLog | 21 ++++--- DESCRIPTION | 8 +- MD5 | 16 ++--- NAMESPACE | 4 - R/tost.R | 152 ++++++++++++++++++++++++++++++++++++++++++++---------- data/pref.4PG.rda |binary data/pref.LAI.rda |binary data/ufc.rda |binary man/tost.Rd | 45 ++++++++++++--- 9 files changed, 186 insertions(+), 60 deletions(-)
Title: Ensemble BMA Forecasting
Description: Ensemble BMA for social science data.
Author: Jacob M. Montgomery, Florian M. Hollenbach, and Michael D. Ward
Maintainer: Florian M. Hollenbach <fhollenbach@tamu.edu>
Diff between EBMAforecast versions 0.42 dated 2013-02-25 and 0.52 dated 2016-02-10
EBMAforecast-0.42/EBMAforecast/R/fDatFitNormal.R |only EBMAforecast-0.42/EBMAforecast/R/forecastData.R |only EBMAforecast-0.42/EBMAforecast/man/plot.Rd |only EBMAforecast-0.42/EBMAforecast/man/summary.Rd |only EBMAforecast-0.52/EBMAforecast/DESCRIPTION | 26 - EBMAforecast-0.52/EBMAforecast/MD5 | 59 +-- EBMAforecast-0.52/EBMAforecast/NAMESPACE | 34 + EBMAforecast-0.52/EBMAforecast/R/AforecastData.R |only EBMAforecast-0.52/EBMAforecast/R/EBMApredict.R |only EBMAforecast-0.52/EBMAforecast/R/FDatFitNormal.R |only EBMAforecast-0.52/EBMAforecast/R/RcppExports.R |only EBMAforecast-0.52/EBMAforecast/R/calibrateEnsemble.R | 55 +- EBMAforecast-0.52/EBMAforecast/R/compareModels.R | 21 - EBMAforecast-0.52/EBMAforecast/R/document-data.R | 21 - EBMAforecast-0.52/EBMAforecast/R/fDatFitLogit.R | 5 EBMAforecast-0.52/EBMAforecast/R/fitEnsembleLogit.R | 152 ++++---- EBMAforecast-0.52/EBMAforecast/R/fitEnsembleNormal.R | 161 +++++--- EBMAforecast-0.52/EBMAforecast/R/makeForecastData.R | 29 - EBMAforecast-0.52/EBMAforecast/R/plot.R | 31 - EBMAforecast-0.52/EBMAforecast/R/predictLogit.R |only EBMAforecast-0.52/EBMAforecast/R/predictNormal.R |only EBMAforecast-0.52/EBMAforecast/R/summary.R | 17 EBMAforecast-0.52/EBMAforecast/R/utility-functions.R |only EBMAforecast-0.52/EBMAforecast/demo/presForecast.R | 1 EBMAforecast-0.52/EBMAforecast/man/EBMAforecast.Rd | 63 --- EBMAforecast-0.52/EBMAforecast/man/EBMApredict.Rd |only EBMAforecast-0.52/EBMAforecast/man/ForecastData.Rd | 98 ++--- EBMAforecast-0.52/EBMAforecast/man/calibrateEnsemble.Rd | 186 +++------- EBMAforecast-0.52/EBMAforecast/man/calibrationSample.Rd | 47 -- EBMAforecast-0.52/EBMAforecast/man/compareModels.Rd | 80 +--- EBMAforecast-0.52/EBMAforecast/man/makeForecastData.Rd | 118 +++--- EBMAforecast-0.52/EBMAforecast/man/plot-FDatFitLogit-method.Rd |only EBMAforecast-0.52/EBMAforecast/man/presidentialForecast.Rd | 73 +-- EBMAforecast-0.52/EBMAforecast/man/summary-FDatFitLogit-method.Rd |only EBMAforecast-0.52/EBMAforecast/man/testSample.Rd | 46 -- EBMAforecast-0.52/EBMAforecast/src |only EBMAforecast-0.52/EBMAforecast/tests |only 37 files changed, 643 insertions(+), 680 deletions(-)
Title: Cardiovascular Safety Exposure-Response Modeling in Early-Phase
Clinical Studies
Description: Includes 100 mixed-effects model structures describing the relationship between drug concentration and QT interval, heart rate/pulse rate or blood pressure. Given an exposure-response dataset, the tool fits each model structure to the observed data.
Author: Daniela J Conrado [aut, cre], Gregory J Hather [aut], William S Denney [aut], Danny Chen [ctb]
Maintainer: Daniela J Conrado <danielac@metrumrg.com>
Diff between cardioModel versions 1.2 dated 2015-09-28 and 1.3 dated 2016-02-10
DESCRIPTION | 12 +++--- MD5 | 34 ++++++++--------- NAMESPACE | 3 + R/03_pre_modeling.R | 29 +++++++++++++++ R/04_cder.R | 14 +++---- R/10_nlme-ETA-BL-v22.R | 60 +++++++++++++++++++------------ R/11_nlme-ETA-SLOPE-EC50-v22.R | 58 +++++++++++++++++++----------- R/12_nlme-ETA-SLOPE-EMAX-v22.R | 41 +++++++++++++-------- R/13_nlme-ETA-SLOPE-EC50-EMAX-v22.R | 41 +++++++++++++-------- R/14_nlme-BOV-ETA-BL-v22.R | 58 +++++++++++++++++++----------- R/15_nlme-BOV-ETA-SLOPE-EC50-v23.R | 56 ++++++++++++++++++----------- R/16_nlme-BOV-ETA-SLOPE-EMAX-v23.R | 39 +++++++++++++------- R/17_nlme-BOV-ETA-SLOPE-EC50-EMAX-v22.R | 41 +++++++++++++-------- R/20_Review.R | 37 +++++++++++++++---- R/21_cardioModel.R | 61 +++++++++++++++++--------------- inst/CITATION | 46 ++++++++++++------------ man/cardioModel.Rd | 26 +++++++++---- man/sim_QTcf.Rd | 20 +++++----- 18 files changed, 426 insertions(+), 250 deletions(-)
Title: Multilevel Modeling of Dendroclimatical Fluctuations
Description: Multilevel data frames of tree rings and climate are modeled into normalized fluctuations of tree growth and aridity. Modeled fluctuations (model frames) are compared with Mantel correlograms on multiple levels defined by sample design. Package implementation can be understood by running examples in functions ringApply(), modelFrame(), and muleMan().
Author: Wilson Lara <wilarhen@gmail.com>, Felipe Bravo <fbravo@pvs.uva.es>
Maintainer: Wilson Lara <wilarhen@gmail.com>
Diff between BIOdry versions 0.2 dated 2015-12-30 and 0.3 dated 2016-02-10
DESCRIPTION | 10 ++-- MD5 | 25 ++++++----- NEWS |only R/modelFrame.R | 55 ++++++++++++++++--------- R/muleMan.R | 106 +++++++++++++++++++++++++++----------------------- R/shiftFrame.R | 106 ++++++++++++++++++++++++++++++-------------------- build/partial.rdb |binary man/BIOdry-package.Rd | 7 ++- man/PTclim05.Rd | 3 - man/Pradii03.Rd | 11 ++--- man/Prings05.Rd | 10 ++-- man/modelFrame.Rd | 50 ++++++++++++++++------- man/muleMan.Rd | 74 ++++++++++++++++++++++------------ man/shiftFrame.Rd | 61 ++++++++++++++++++++++------ 14 files changed, 325 insertions(+), 193 deletions(-)