Title: Student Growth Percentiles & Percentile Growth Trajectories
Description: Functions to calculate student growth percentiles and percentile growth projections/trajectories for students using large scale,
longitudinal assessment data. Functions use quantile regression to estimate the conditional density associated
with each student's achievement history. Percentile growth projections/trajectories are calculated using the coefficient matrices derived from
the quantile regression analyses and specify what percentile growth is required for students to reach future achievement targets.
Author: Damian W. Betebenner [aut, cre],
Adam R. Van Iwaarden [aut],
Ben Domingue [aut],
Yi Shang [aut],
Jonathan Weeks [ctb],
John Stewart [ctb],
Jinnie Choi [ctb],
Xin Wei [ctb],
Hi Shin Shim [ctb],
Xiaoyuan Tan [ctb] (Arizona Department of Education),
Carrie Giovannini [ctb] (Arizona Department of Education),
Sarah Polasky [ctb] (Arizona State University),
Rebecca Gau [ctb] (Arizona Charter School Association),
Jeffrey Dean [ctb] (University of Arkansas),
William Bonk [ctb] (Colorado Department of Education),
Marie Huchton [ctb] (Colorado Department of Education),
Allison Timberlake [ctb] (Georgia Department of Education),
Qi Qin [ctb] (Georgia Department of Education),
Melissa Fincher [ctb] (Georgia Department of Education),
Kiran Athota [ctb] (Georgia Department of Education),
Travis Allen [ctb] (Georgia Department of Education),
Glenn Hirata [ctb] (Hawaii Department of Education),
Glenn Nochi [ctb] (Hawaii Department of Education),
Joshua Lee [ctb] (Hawaii Department of Education),
Ayaka Nukui [ctb] (Idaho Department of Education),
Carissa Miller [ctb] (Idaho Department of Education),
Matthew Raimondi [ctb] (Elgin Area School District U46 (Illinois)),
Wes Bruce [ctb] (Indiana Department of Education),
Robert Hochsegang [ctb] (Indiana Department of Education),
Tony Moss [ctb] (Kansas State Department of Education),
Xuewen Sheng [ctb] (Kansas State Department of Education),
Kathy Flanagan [ctb] (Massachusetts Department of Elementary and Secondary Education),
Robert Lee [ctb] (Massachusetts Department of Elementary and Secondary Education),
Ji Zeng [ctb] (Michigan Department of Education),
Steve Viger [ctb] (Michigan Department of Education),
Joe DeCastra [ctb] (Mississippi Department of Education),
Ken Thompson [ctb] (Mississippi Department of Education),
Soo Yeon Cho [ctb] (Missouri Department of Education),
Jeff Halsell [ctb] (Clark County School District, Nevada),
Selcuk Ozdemir [ctb] (Washoe County School District, Nevada),
Roger Silva [ctb] (Nevada Department of Education),
Deb Wiswell [ctb] (New Hampshire Department of Education),
Katya Levitan-Reiner [ctb] (New Haven Public Schools),
Catherine McCaslin [ctb] (New Haven Public Schools),
Joshua Marland [ctb] (New York Education Department),
W Joshua Rew [ctb] (Oregon Department of Education),
Jason Becker [ctb] (Rhode Island Department of Education),
Jessica Bailey [ctb] (Rhode Island Department of Education),
Ana Karantonis [ctb] (Rhode Island Department of Education),
Deborah Jonas [ctb] (Virginia Department of Education),
Juan D'Brot [ctb] (West Virginia Department of Education),
Nate Hixson [ctb] (West Virginia Department of Education),
Deb Came [ctb] (Washington Office of Superintendent of Public Instruction),
Ashley Colburn [ctb] (Washington Office of Superintendent of Public Instruction),
Nick Hassell [ctb] (Washington Office of Superintendent of Public Instruction),
Krissy Johnson [ctb] (Washington Office of Superintendent of Public Instruction),
Daniel Bush [ctb] (Wisconsin Department of Education),
Justin Meyer [ctb] (Wisconsin Department of Education),
Joseph Newton [ctb] (Wisconsin Department of Education),
Nick Stroud [ctb] (Wisconsin Department of Education),
John Paul [ctb] (Wyoming Department of Education),
Michael Flicek [ctb] (Michael Flicek Projects LLC working with Wyoming Department of Education),
Phyllis Clay [ctb] (Albuquerque Public Schools),
Peter Kinyua [ctb] (Albuquerque Public Schools),
Brendan Houng [ctb] (University of Melbourne, Australia, NAPLAN),
Leslie Rosale [ctb] (Ministry of Education, Guatemala),
Nathan Wall [ctb] (eMetric working with Nevada Department of Education and South Dakota Department of Education),
Narek Sahakyan [ctb] (World Class Instruction and Design (WIDA))
Maintainer: Damian W. Betebenner <dbetebenner@nciea.org>
Diff between SGP versions 1.4-0.0 dated 2016-01-10 and 1.5-0.0 dated 2016-03-04
DESCRIPTION | 12 - MD5 | 72 ++++--- NAMESPACE | 3 R/abcSGP.R | 11 - R/analyzeSGP.R | 54 +++-- R/createLongCutscores.R | 26 +- R/getAchievementLevel.R | 2 R/getMaxOrderForProgression.R | 9 R/getSGPColor.R |only R/getSGPConfig.R | 6 R/getStateAbbreviation.R | 4 R/gofSGP.R | 14 - R/growthAchievementPlot.R | 140 ++++++++++----- R/messageSGP.R |only R/outputSGP.R | 20 +- R/piecewiseTransform.R | 7 R/prepareSGP.R | 3 R/rliSGP.R | 52 +++-- R/startParallel.R | 1 R/studentGrowthPercentiles.R | 194 +++++++++++---------- R/studentGrowthProjections.R | 6 R/summarizeSGP.R | 6 R/summarizeSGP_Utilities.R | 2 R/testSGP.R | 365 ++++++++++++++++++++-------------------- R/transformScaleScore.R | 8 R/updateSGP.R | 10 - R/visualizeSGP.R | 34 --- R/zzz.R | 2 data/SGPstateData.rda |binary inst/CITATION | 9 inst/NEWS | 8 man/SGP-package.Rd | 4 man/abcSGP.Rd | 5 man/analyzeSGP.Rd | 3 man/growthAchievementPlot.Rd | 2 man/rliSGP.Rd | 4 man/studentGrowthPercentiles.Rd | 5 man/updateSGP.Rd | 5 38 files changed, 610 insertions(+), 498 deletions(-)
Title: Insolation for Palaeoclimate Studies
Description: R package to compute Incoming Solar Radiation (insolation) for palaeoclimate studies. Features three solutions: Berger (1978), Berger and Loutre (1991) and Laskar et al. (2004). Computes daily-mean, season-averaged and annual means for all latitudes.
Author: Michel Crucifix
Maintainer: Michel Crucifix <michel.crucifix@uclouvain.be>
Diff between palinsol versions 0.92 dated 2014-04-04 and 0.93 dated 2016-03-04
palinsol-0.92/palinsol/inst/orig |only palinsol-0.93/palinsol/CHANGES | 3 + palinsol-0.93/palinsol/DESCRIPTION | 14 ++-- palinsol-0.93/palinsol/MD5 | 37 ++++++------ palinsol-0.93/palinsol/NAMESPACE | 4 + palinsol-0.93/palinsol/R/astro.R | 93 +++++++++++++++++-------------- palinsol-0.93/palinsol/data/BER78.rda |binary palinsol-0.93/palinsol/data/BER90.rda |binary palinsol-0.93/palinsol/data/LA04.rda |binary palinsol-0.93/palinsol/inst/extdata |only palinsol-0.93/palinsol/man/BER78.Rd | 33 +++++------ palinsol-0.93/palinsol/man/Insol.Rd | 10 +-- palinsol-0.93/palinsol/man/Insol_l1l2.Rd | 2 palinsol-0.93/palinsol/man/LA04.Rd | 13 +--- palinsol-0.93/palinsol/man/astro.Rd | 40 ++++++++----- palinsol-0.93/palinsol/man/day2l.Rd | 6 +- 16 files changed, 141 insertions(+), 114 deletions(-)
Title: Functions for Nonlinear Least Squares Solutions
Description: Replacement for nls() tools for working with nonlinear least squares problems.
The calling structure is similar to, but much simpler than, that of the nls()
function. Moreover, where nls() specifically does NOT deal with small or zero
residual problems, nlmrt is quite happy to solve them. It also attempts to be
more robust in finding solutions, thereby avoiding 'singular gradient' messages
that arise in the Gauss-Newton method within nls(). The Marquardt-Nash approach
in nlmrt generally works more reliably to get a solution, though this may be
one of a set of possibilities, and may also be statistically unsatisfactory.
Added print and summary as of August 28, 2012.
Author: John C. Nash [aut, cre]
Maintainer: John C. Nash <nashjc@uottawa.ca>
Diff between nlmrt versions 2013-9.25 dated 2014-12-05 and 2016.3.2 dated 2016-03-04
DESCRIPTION | 24 ++++------ MD5 | 28 +++++------ NAMESPACE | 13 +++-- NEWS | 26 ++++++++--- R/model2jacfun.R | 6 ++ R/nlmrt.R | 10 ++-- R/nlxb.R | 9 +++ build/vignette.rds |binary inst/doc/nlmrt-vignette.R | 1 inst/doc/nlmrt-vignette.Rnw | 3 + inst/examples/eshl.R | 2 man/nlmrt-package.Rd | 101 +++++++++++++++++++++++++------------------ man/nlxb.Rd | 6 -- man/wrapnls.Rd | 4 + vignettes/nlmrt-vignette.Rnw | 4 + 15 files changed, 144 insertions(+), 93 deletions(-)
Title: Multilevel Mediation Analysis
Description: Used for mediation analysis with generalized multilevel models.
Author: Qingzhao Yu, Bin Li
Maintainer: Qingzhao Yu <qyu@lsuhsc.edu>
Diff between mlma versions 1.0-0 dated 2015-10-31 and 2.0-0 dated 2016-03-04
DESCRIPTION | 6 MD5 | 16 NAMESPACE | 1 R/mlma.r | 894 ++++++++++++++++++++++++++++++++++++++--------- man/boot.mlma.Rd | 36 + man/data.org.Rd | 33 - man/mlma.Rd | 34 + man/plot.mlma.boot.Rd | 9 man/summary.mlma.boot.Rd | 9 9 files changed, 822 insertions(+), 216 deletions(-)
Title: Model Implied Instrumental Variable (MIIV) Estimation of
Structural Equation Models
Description: Functions for estimating structural equation models using model-
implied instrumental variables.
Author: Zachary Fisher, Ken Bollen, Kathleen Gates, and Mikko Rönkkö.
Maintainer: Zachary Fisher <fish.zachary@gmail.com>
Diff between MIIVsem versions 0.4.4 dated 2015-11-30 and 0.4.5 dated 2016-03-04
DESCRIPTION | 9 +- MD5 | 10 +- R/MIIVsem.R | 3 R/miive.R | 24 ++++-- R/miivs.R | 221 +++++++++++++++++++++++++++++++++++++++------------------ man/MIIVsem.Rd | 3 6 files changed, 185 insertions(+), 85 deletions(-)
Title: Geostatistical Modelling with Likelihood and Bayes
Description: Geostatistical modelling facilities using Raster and SpatialPoints objects are provided. Non-Gaussian models are fit using INLA, and Gaussian geostatistical models use Maximum Likelihood Estimation.
Author: Patrick Brown <patrick.brown@utoronto.ca>[aut, cre], Robert Hijmans [ctb]
Maintainer: Patrick Brown <patrick.brown@utoronto.ca>
Diff between geostatsp versions 1.3.10 dated 2015-11-09 and 1.4.0 dated 2016-03-04
DESCRIPTION | 18 ++-- MD5 | 35 +++++--- R/0gm.R | 1 R/RFsimulate.R | 5 - R/glgm.R | 191 ++++++++++++++++++++++++++++++++++++++++++------- R/lgcp.R | 4 - build |only data/gambiaUTM.RData |binary data/loaloa.RData |binary data/murder.RData |binary data/nn32.RData |binary data/rongelapUTM.RData |binary data/swissRain.RData |binary data/swissRainR.RData |binary data/torontoPop.RData |binary data/wheat.RData |binary inst/doc |only tests/glgm.R | 4 - vignettes |only 19 files changed, 202 insertions(+), 56 deletions(-)
Title: Generalized Competing Event Model
Description: Generalized competing event model based on Cox PH model and Fine-Gray model.
This function is designed to develop optimized risk-stratification methods for competing
risks data, such as described in:
1. Carmona R, Gulaya S, Murphy JD, Rose BS, Wu J, Noticewala S,McHale MT, Yashar CM, Vaida F,
and Mell LK.(2014) Validated competing event model for thestage I-II endometrial cancer
population. Int J Radiat Oncol Biol Phys.89:888-98. <DOI:10.1016/j.ijrobp.2014.03.047>.
2. Carmona R, Zakeri K, Green G, Hwang L, Gulaya S, Xu B, Verma R, Williamson CW, Triplett DP, Rose
BS, Shen H, Vaida F, Murphy JD, and Mell LK. (2016) Improved method to stratify elderly
cancer patients at risk for competing events. J Clin Oncol.in press. <DOI:10.1200/JCO.2015.65.0739>.
Author: Hanjie Shen <has072@ucsd.edu>, Ruben Carmona
<ruben.carmona13@gmail.com>, Loren Mell <lmell@ucsd.edu>
Maintainer: Hanjie Shen <shenhanjie0418@gmail.com>
Diff between gcerisk versions 16.1.1 dated 2016-02-04 and 16.1.2 dated 2016-03-04
DESCRIPTION | 8 +++--- MD5 | 10 +++---- R/gcecox.R | 76 ++++++++++++++++++++++++++++++++++++---------------------- R/gcefg.R | 41 ++++++++++++++----------------- man/gcecox.Rd | 2 - man/gcefg.Rd | 2 - 6 files changed, 78 insertions(+), 61 deletions(-)
Title: Parsing and Evaluation Tools that Provide More Details than the
Default
Description: Parsing and evaluation tools that make it easy to recreate the
command line behaviour of R.
Author: Hadley Wickham [aut],
Yihui Xie [cre, ctb],
Michael Lawrence [ctb],
Thomas Kluyver [ctb],
Barret Schloerke [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between evaluate versions 0.8 dated 2015-09-18 and 0.8.3 dated 2016-03-04
DESCRIPTION | 21 +++++++++++------ LICENSE | 2 - MD5 | 16 ++++++------- NEWS | 6 ++++ R/eval.r | 42 +++++++++++++++++++--------------- R/parse.r | 52 ++++++++++++++++++++++++++++--------------- man/evaluate.Rd | 36 +++++++++++++++-------------- man/parse_all.Rd | 4 ++- tests/testthat/test-errors.r | 2 - 9 files changed, 109 insertions(+), 72 deletions(-)
Title: Exploration and Graphics for RivEr Trends (EGRET)
Description: Statistics and graphics for streamflow history,
water quality trends, and the statistical modeling algorithm: Weighted
Regressions on Time, Discharge, and Season (WRTDS).
Author: Robert Hirsch [aut],
Laura DeCicco [aut, cre]
Maintainer: Laura DeCicco <ldecicco@usgs.gov>
Diff between EGRET versions 2.3.1 dated 2015-08-13 and 2.4.3 dated 2016-03-04
DESCRIPTION | 9 - MD5 | 249 ++++++++++++++++++++--------------------- NAMESPACE | 2 R/boxConcThree.R | 29 +++- R/boxResidMonth.R | 23 ++- R/censoredSegments.R | 8 - R/fluxBiasEight.R | 1 R/makeRandomResiduals.R |only R/multiPlotDataOverview.R | 5 R/plotConcHist.R | 6 R/plotConcPred.R | 21 +-- R/plotConcQ.R | 11 + R/plotConcTime.R | 8 - R/plotConcTimeDaily.R | 11 - R/plotContours.R | 43 ++++--- R/plotDiffContours.R | 59 +++++---- R/plotFluxHist.R | 4 R/plotFluxPred.R | 19 +-- R/plotResidPred.R | 64 ++++++++-- R/plotResidQ.R | 79 ++++++++----- R/plotResidTime.R | 70 ++++++++--- R/populateDateColumns.r | 5 R/printSeries.R | 2 R/processQWData.r | 2 R/readMetaData.r | 2 R/setupYears.R | 2 README.md | 2 build/vignette.rds |binary man/Choptank_eList.Rd | 2 man/Constants.Rd | 2 man/EGRET-package.Rd | 6 man/INFOdataframe.Rd | 6 man/as.egret.Rd | 2 man/blankTime.Rd | 6 man/boxConcMonth.Rd | 8 - man/boxConcThree.Rd | 6 man/boxQTwice.Rd | 8 - man/boxResidMonth.Rd | 18 +- man/calculateMonthlyResults.Rd | 4 man/censoredSegments.Rd | 12 - man/checkStartEndDate.Rd | 2 man/compressData.Rd | 6 man/dataOverview.Rd | 2 man/dateFormatCheck.Rd | 2 man/estCrossVal.Rd | 10 - man/estDailyFromSurfaces.Rd | 4 man/estSurfaces.Rd | 12 - man/fixSampleFrame.Rd | 4 man/flowDuration.Rd | 20 +-- man/fluxBiasMulti.Rd | 10 - man/fluxBiasStat.Rd | 12 - man/fluxUnit-class.Rd | 14 +- man/formatCheckDate.Rd | 2 man/formatCheckParameterCd.Rd | 2 man/generalAxis.Rd | 2 man/genericEGRETDotPlot.Rd | 4 man/getDaily.Rd | 2 man/getInfo.Rd | 2 man/getSample.Rd | 2 man/getSurfaces.Rd | 2 man/is.egret.Rd | 2 man/logPretty1.Rd | 4 man/logPretty3.Rd | 6 man/makeAnnualSeries.Rd | 26 ++-- man/mergeReport.Rd | 4 man/modelEstimation.Rd | 8 - man/monthLabel-class.Rd | 2 man/multiPlotDataOverview.Rd | 10 - man/plot15.Rd | 2 man/plot1of15.Rd | 2 man/plotConcHist.Rd | 12 - man/plotConcPred.Rd | 8 - man/plotConcQ.Rd | 10 - man/plotConcQSmooth.Rd | 16 +- man/plotConcTime.Rd | 16 +- man/plotConcTimeDaily.Rd | 12 - man/plotConcTimeSmooth.Rd | 6 man/plotContours.Rd | 46 +++---- man/plotDiffContours.Rd | 42 +++--- man/plotFlowSingle.Rd | 6 man/plotFluxHist.Rd | 10 - man/plotFluxPred.Rd | 8 - man/plotFluxQ.Rd | 4 man/plotFluxTimeDaily.Rd | 10 - man/plotFour.Rd | 8 - man/plotFourStats.Rd | 6 man/plotQTimeDaily.Rd | 6 man/plotResidPred.Rd | 12 - man/plotResidQ.Rd | 10 - man/plotResidTime.Rd | 10 - man/plotSDLogQ.Rd | 12 - man/populateConcentrations.Rd | 2 man/populateDaily.Rd | 6 man/populateDateColumns.Rd | 4 man/populateParameterINFO.Rd | 2 man/populateSampleColumns.Rd | 2 man/populateSiteINFO.Rd | 2 man/print.egret.Rd | 2 man/printFluxUnitCheatSheet.Rd | 2 man/printSeries.Rd | 6 man/printqUnitCheatSheet.Rd | 2 man/processQWData.Rd | 4 man/qUnit-class.Rd | 6 man/readDataFromFile.Rd | 4 man/readNWISDaily.Rd | 6 man/readNWISSample.Rd | 4 man/readUserDaily.Rd | 4 man/readUserSample.Rd | 10 - man/readWQPSample.Rd | 6 man/removeDuplicates.Rd | 4 man/runSurvReg.Rd | 10 - man/saveResults.Rd | 11 + man/selectDays.Rd | 16 +- man/setPA.Rd | 10 - man/setSeasonLabel.Rd | 16 +- man/setSeasonLabelByUser.Rd | 16 +- man/setUpEstimation.Rd | 3 man/setupYears.Rd | 10 - man/surfaceIndex.Rd | 2 man/tableChange.Rd | 6 man/tableChangeSingle.Rd | 6 man/tableFlowChange.Rd | 6 man/tableResults.Rd | 4 man/triCube.Rd | 4 man/yPretty.Rd | 2 tests/testthat/tests_imports.R | 6 126 files changed, 826 insertions(+), 648 deletions(-)
Title: Retrieval Functions for USGS and EPA Hydrologic and Water
Quality Data
Description: Collection of functions to help retrieve U.S. Geological Survey
(USGS) and U.S. Environmental Protection Agency (EPA) water quality and
hydrology data from web services. USGS web services are discovered from the
National Water Information System (NWIS) tools. Both EPA and USGS water
quality data are obtained from the Water Quality Portal.
Author: Robert Hirsch [aut],
Laura DeCicco [aut, cre],
David Lorenz [aut],
Jordan Read [ctb],
Lindsay Carr [ctb]
Maintainer: Laura DeCicco <ldecicco@usgs.gov>
Diff between dataRetrieval versions 2.3.1 dated 2015-08-14 and 2.5.2 dated 2016-03-04
dataRetrieval-2.3.1/dataRetrieval/R/whatNWISdata.r |only dataRetrieval-2.5.2/dataRetrieval/DESCRIPTION | 24 dataRetrieval-2.5.2/dataRetrieval/MD5 | 120 +-- dataRetrieval-2.5.2/dataRetrieval/NAMESPACE | 42 + dataRetrieval-2.5.2/dataRetrieval/NEWS | 12 dataRetrieval-2.5.2/dataRetrieval/R/AAA.R |only dataRetrieval-2.5.2/dataRetrieval/R/constructNWISURL.r | 40 - dataRetrieval-2.5.2/dataRetrieval/R/getWebServiceData.R | 70 +- dataRetrieval-2.5.2/dataRetrieval/R/importRDB1.r | 324 +++++----- dataRetrieval-2.5.2/dataRetrieval/R/importWQP.R | 203 +++--- dataRetrieval-2.5.2/dataRetrieval/R/importWaterML1.r | 109 +-- dataRetrieval-2.5.2/dataRetrieval/R/importWaterML2.r | 44 - dataRetrieval-2.5.2/dataRetrieval/R/readNWISdata.r | 111 +-- dataRetrieval-2.5.2/dataRetrieval/R/readNWISpCode.r | 2 dataRetrieval-2.5.2/dataRetrieval/R/readNWISqw.r | 29 dataRetrieval-2.5.2/dataRetrieval/R/readNWISsite.r | 4 dataRetrieval-2.5.2/dataRetrieval/R/readNWISunit.r | 179 +++-- dataRetrieval-2.5.2/dataRetrieval/R/readWQPdata.R | 17 dataRetrieval-2.5.2/dataRetrieval/R/readWQPqw.r | 2 dataRetrieval-2.5.2/dataRetrieval/R/renameColumns.R | 6 dataRetrieval-2.5.2/dataRetrieval/R/setAccess.R |only dataRetrieval-2.5.2/dataRetrieval/R/tabbedDataRetrievals.R | 14 dataRetrieval-2.5.2/dataRetrieval/R/whatNWISData.r |only dataRetrieval-2.5.2/dataRetrieval/R/whatNWISsites.R | 14 dataRetrieval-2.5.2/dataRetrieval/R/whatWQPsites.R | 56 - dataRetrieval-2.5.2/dataRetrieval/README.md | 3 dataRetrieval-2.5.2/dataRetrieval/build/vignette.rds |binary dataRetrieval-2.5.2/dataRetrieval/inst/doc/dataRetrieval.pdf |binary dataRetrieval-2.5.2/dataRetrieval/man/checkWQPdates.Rd | 6 dataRetrieval-2.5.2/dataRetrieval/man/constructNWISURL.Rd | 9 dataRetrieval-2.5.2/dataRetrieval/man/constructWQPURL.Rd | 6 dataRetrieval-2.5.2/dataRetrieval/man/countyCd.Rd | 2 dataRetrieval-2.5.2/dataRetrieval/man/dataRetrieval-package.Rd | 2 dataRetrieval-2.5.2/dataRetrieval/man/getWebServiceData.Rd | 6 dataRetrieval-2.5.2/dataRetrieval/man/importRDB1.Rd | 35 - dataRetrieval-2.5.2/dataRetrieval/man/importWQP.Rd | 20 dataRetrieval-2.5.2/dataRetrieval/man/importWaterML1.Rd | 19 dataRetrieval-2.5.2/dataRetrieval/man/importWaterML2.Rd | 7 dataRetrieval-2.5.2/dataRetrieval/man/pCodeToName.Rd | 2 dataRetrieval-2.5.2/dataRetrieval/man/parameterCdFile.Rd | 2 dataRetrieval-2.5.2/dataRetrieval/man/readNWISdata.Rd | 40 - dataRetrieval-2.5.2/dataRetrieval/man/readNWISdv.Rd | 12 dataRetrieval-2.5.2/dataRetrieval/man/readNWISgwl.Rd | 13 dataRetrieval-2.5.2/dataRetrieval/man/readNWISmeas.Rd | 26 dataRetrieval-2.5.2/dataRetrieval/man/readNWISpCode.Rd | 6 dataRetrieval-2.5.2/dataRetrieval/man/readNWISpeak.Rd | 17 dataRetrieval-2.5.2/dataRetrieval/man/readNWISqw.Rd | 18 dataRetrieval-2.5.2/dataRetrieval/man/readNWISrating.Rd | 9 dataRetrieval-2.5.2/dataRetrieval/man/readNWISsite.Rd | 80 +- dataRetrieval-2.5.2/dataRetrieval/man/readNWISuv.Rd | 17 dataRetrieval-2.5.2/dataRetrieval/man/readWQPdata.Rd | 12 dataRetrieval-2.5.2/dataRetrieval/man/readWQPqw.Rd | 14 dataRetrieval-2.5.2/dataRetrieval/man/renameNWISColumns.Rd | 8 dataRetrieval-2.5.2/dataRetrieval/man/setAccess.Rd |only dataRetrieval-2.5.2/dataRetrieval/man/stateCd.Rd | 10 dataRetrieval-2.5.2/dataRetrieval/man/stateCdLookup.Rd | 2 dataRetrieval-2.5.2/dataRetrieval/man/whatNWISdata.Rd | 10 dataRetrieval-2.5.2/dataRetrieval/man/whatNWISsites.Rd | 2 dataRetrieval-2.5.2/dataRetrieval/man/whatWQPsites.Rd | 9 dataRetrieval-2.5.2/dataRetrieval/man/xmlcontent.Rd |only dataRetrieval-2.5.2/dataRetrieval/man/zeroPad.Rd | 2 dataRetrieval-2.5.2/dataRetrieval/tests/testthat/tests_general.R | 8 dataRetrieval-2.5.2/dataRetrieval/tests/testthat/tests_imports.R | 10 dataRetrieval-2.5.2/dataRetrieval/tests/testthat/tests_userFriendly_fxns.R | 13 64 files changed, 1061 insertions(+), 818 deletions(-)
Title: Matrices Backed by Binary PED Files (PLINK)
Description: A matrix-like data structure that allows for efficient,
convenient, and scalable subsetting of binary genotype/phenotype files
generated by PLINK (http://pngu.mgh.harvard.edu/~purcell/plink/), the whole
genome association analysis toolset, without loading the entire file into
memory.
Author: Alexander Grueneberg [aut, cre],
Lian Lian [ctb],
Gustavo de los Campos [ctb]
Maintainer: Alexander Grueneberg <alexander.grueneberg@googlemail.com>
Diff between BEDMatrix versions 1.1.0 dated 2015-11-30 and 1.2.0 dated 2016-03-04
BEDMatrix-1.1.0/BEDMatrix/tests/testthat/test-bedmatrix.R |only BEDMatrix-1.2.0/BEDMatrix/DESCRIPTION | 8 - BEDMatrix-1.2.0/BEDMatrix/MD5 | 19 +-- BEDMatrix-1.2.0/BEDMatrix/NAMESPACE | 3 BEDMatrix-1.2.0/BEDMatrix/NEWS.md | 16 ++ BEDMatrix-1.2.0/BEDMatrix/R/BEDMatrix.R | 80 +++++++++++--- BEDMatrix-1.2.0/BEDMatrix/R/package.R | 31 +++-- BEDMatrix-1.2.0/BEDMatrix/README.md | 59 ++++------ BEDMatrix-1.2.0/BEDMatrix/man/BEDMatrix-package.Rd |only BEDMatrix-1.2.0/BEDMatrix/man/BEDMatrix.Rd | 59 +++++++--- BEDMatrix-1.2.0/BEDMatrix/src/BEDMatrix.cpp | 12 +- BEDMatrix-1.2.0/BEDMatrix/tests/testthat/test-BEDMatrix.R |only 12 files changed, 188 insertions(+), 99 deletions(-)
Title: Tools for Storing, Restoring and Searching for R Objects
Description: Data exploration and modelling is a process in which a lot of data
artifacts are produced. Artifacts like: subsets, data aggregates, plots,
statistical models, different versions of data sets and different versions
of results. The more projects we work with the more artifacts are produced
and the harder it is to manage these artifacts. Archivist helps to store
and manage artifacts created in R. Archivist allows you to store selected
artifacts as a binary files together with their metadata and relations.
Archivist allows to share artifacts with others, either through shared
folder or github. Archivist allows to look for already created artifacts by
using it's class, name, date of the creation or other properties. Makes it
easy to restore such artifacts. Archivist allows to check if new artifact
is the exact copy that was produced some time ago. That might be useful
either for testing or caching.
Author: Przemyslaw Biecek [aut, cre],
Marcin Kosinski [aut],
Witold Chodor [ctb]
Maintainer: Przemyslaw Biecek <przemyslaw.biecek@gmail.com>
Diff between archivist versions 2.0.1 dated 2016-02-21 and 2.0.2 dated 2016-03-04
archivist-2.0.1/archivist/inst/graphGallery/gallery/600bda83cb840947976bd1ce3a11879d.png |only archivist-2.0.1/archivist/inst/graphGallery/gallery/600bda83cb840947976bd1ce3a11879d.rda |only archivist-2.0.1/archivist/inst/graphGallery/gallery/70f4f83dbfef2a8afb2f495208d0a60f.png |only archivist-2.0.1/archivist/inst/graphGallery/gallery/70f4f83dbfef2a8afb2f495208d0a60f.rda |only archivist-2.0.2/archivist/DESCRIPTION | 6 archivist-2.0.2/archivist/MD5 | 98 +++++----- archivist-2.0.2/archivist/NAMESPACE | 1 archivist-2.0.2/archivist/NEWS.md | 7 archivist-2.0.2/archivist/R/aread.R | 4 archivist-2.0.2/archivist/R/asession.R | 2 archivist-2.0.2/archivist/R/atags.R | 2 archivist-2.0.2/archivist/R/loadFromRepo.R | 2 archivist-2.0.2/archivist/R/restoreLibraries.R |only archivist-2.0.2/archivist/R/saveToRepo.R | 2 archivist-2.0.2/archivist/demo/archivist_jss.r | 20 +- archivist-2.0.2/archivist/inst/graphGallery/backpack.db |binary archivist-2.0.2/archivist/inst/graphGallery/gallery/13b2724139eb2c62578b4dab0d7b2cea.png |only archivist-2.0.2/archivist/inst/graphGallery/gallery/13b2724139eb2c62578b4dab0d7b2cea.rda |only archivist-2.0.2/archivist/inst/graphGallery/gallery/1862bb3adaf78b7b3b9a30b46526bf7e.rda |only archivist-2.0.2/archivist/inst/graphGallery/gallery/2362b67ee86693d7326c95d3526a5cd8.rda |only archivist-2.0.2/archivist/inst/graphGallery/gallery/f05f0ed0662fe01850ec1b928830ef32.png |only archivist-2.0.2/archivist/inst/graphGallery/gallery/f05f0ed0662fe01850ec1b928830ef32.rda |only archivist-2.0.2/archivist/man/Repository.Rd | 2 archivist-2.0.2/archivist/man/Tags.Rd | 2 archivist-2.0.2/archivist/man/addHooksToPrint.Rd | 2 archivist-2.0.2/archivist/man/addTagsRepo.Rd | 2 archivist-2.0.2/archivist/man/aformat.Rd | 4 archivist-2.0.2/archivist/man/ahistory.Rd | 2 archivist-2.0.2/archivist/man/alink.Rd | 2 archivist-2.0.2/archivist/man/archivist-package.Rd | 2 archivist-2.0.2/archivist/man/archivistOptions.Rd | 2 archivist-2.0.2/archivist/man/aread.Rd | 6 archivist-2.0.2/archivist/man/asearch.Rd | 2 archivist-2.0.2/archivist/man/asession.Rd | 4 archivist-2.0.2/archivist/man/cache.Rd | 2 archivist-2.0.2/archivist/man/copyToRepo.Rd | 2 archivist-2.0.2/archivist/man/createEmptyRepo.Rd | 4 archivist-2.0.2/archivist/man/createMDGallery.Rd | 2 archivist-2.0.2/archivist/man/deleteLocalRepo.Rd | 4 archivist-2.0.2/archivist/man/getRemoteHook.Rd | 2 archivist-2.0.2/archivist/man/getTags.Rd | 4 archivist-2.0.2/archivist/man/loadFromRepo.Rd | 5 archivist-2.0.2/archivist/man/magrittr.Rd | 2 archivist-2.0.2/archivist/man/md5hash.Rd | 2 archivist-2.0.2/archivist/man/restoreLibs.Rd |only archivist-2.0.2/archivist/man/rmFromLocalRepo.Rd | 4 archivist-2.0.2/archivist/man/saveToRepo.Rd | 4 archivist-2.0.2/archivist/man/searchInRepo.Rd | 6 archivist-2.0.2/archivist/man/setRepo.Rd | 4 archivist-2.0.2/archivist/man/shinySearchInRepo.Rd | 2 archivist-2.0.2/archivist/man/showRepo.Rd | 2 archivist-2.0.2/archivist/man/splitTags.Rd | 2 archivist-2.0.2/archivist/man/summaryRepo.Rd | 2 archivist-2.0.2/archivist/man/zipRepo.Rd | 4 archivist-2.0.2/archivist/tests/testthat/test_aoptions.R | 12 - archivist-2.0.2/archivist/tests/testthat/test_jss_artilce.R | 42 +--- 56 files changed, 140 insertions(+), 149 deletions(-)
Title: Default Color Maps from 'matplotlib' (Lite Version)
Description: Port of the new 'matplotlib' color maps ('viridis' - the default
-, 'magma', 'plasma' and 'inferno') to 'R'. 'matplotlib' <http://matplotlib.org/
> is a popular plotting library for 'python'. These color maps are designed
in such a way that they will analytically be perfectly perceptually-uniform,
both in regular form and also when converted to black-and-white. They are
also designed to be perceived by readers with the most common form of color
blindness. This is the 'lite' version of the more complete 'viridis' package
that can be found at <https://cran.r-project.org/package=viridis>.
Author: Simon Garnier [aut, cre],
Noam Ross [ctb, cph],
Bob Rudis [ctb, cph]
Maintainer: Simon Garnier <garnier@njit.edu>
Diff between viridisLite versions 0.1.1 dated 2015-12-31 and 0.1.2 dated 2016-03-04
DESCRIPTION | 8 ++++---- MD5 | 9 +++++---- R/viridis.R | 44 ++++++++++++++++++++++++++++---------------- README.md | 16 ++++++++++++---- man/figures |only man/viridis.Rd | 10 ++++++++++ 6 files changed, 59 insertions(+), 28 deletions(-)
Title: Default Color Maps from 'matplotlib'
Description: Port of the new 'matplotlib' color maps ('viridis' - the default
-, 'magma', 'plasma' and 'inferno') to 'R'. 'matplotlib' <http://matplotlib.org/
> is a popular plotting library for 'python'. These color maps are designed
in such a way that they will analytically be perfectly perceptually-uniform,
both in regular form and also when converted to black-and-white. They are
also designed to be perceived by readers with the most common form of color
blindness.
Author: Simon Garnier [aut, cre],
Noam Ross [ctb, cph] (Continuous scale),
Bob Rudis [ctb, cph] (Combined scales)
Maintainer: Simon Garnier <garnier@njit.edu>
Diff between viridis versions 0.3.2 dated 2015-12-31 and 0.3.3 dated 2016-03-04
DESCRIPTION | 8 +- MD5 | 23 ++++---- R/scales.R | 36 ++++++++++++- R/viridis.R | 48 ++++++++++------- README.md | 2 inst/doc/intro-to-viridis.Rmd | 8 +- inst/doc/intro-to-viridis.html | 110 +++++++++++++++++++++++------------------ man/figures |only man/scale_viridis.Rd | 7 +- man/viridis.Rd | 10 +++ man/viridis_pal.Rd | 10 +++ vignettes/intro-to-viridis.Rmd | 8 +- 12 files changed, 176 insertions(+), 94 deletions(-)
Title: Tools for the Reading and Tokenization of R Code
Description: Tools for the reading and tokenization of R code.
The 'sourcetools' package provides both an R and C++ interface
for the tokenization of R code, and helpers for interacting
with the tokenized representation of R code.
Author: Kevin Ushey
Maintainer: Kevin Ushey <kevinushey@gmail.com>
Diff between sourcetools versions 0.1.1 dated 2016-03-04 and 0.1.2 dated 2016-03-04
DESCRIPTION | 6 +++--- MD5 | 4 ++-- tests/testthat/test-tokenize.R | 5 ----- 3 files changed, 5 insertions(+), 10 deletions(-)
Title: Analysis of Subjective Perspectives Using Q Methodology
Description: Analysis of Q methodology, used to identify distinct perspectives existing within a group.
This methodology is used across social, health and environmental sciences to understand diversity of attitudes, discourses, or decision-making styles (for more information, see http://qmethod.org).
A single function runs the full analysis. Each step can be run separately using the corresponding functions: for automatic flagging of Q-sorts (manual flagging is optional), for statement scores, for distinguishing and consensus statements, and for general characteristics of the factors.
Additional functions are available to import and export data, to print and plot, to import raw data from individual *.CSV files, and to make printable cards.
The package also offers functions to print Q cards and to generate Q distributions for study administration.
The package uses principal components and it allows manual or automatic flagging, a number of mathematical methods for rotation, and a number of correlation coefficients for the initial correlation matrix.
See further details in the package documentation, and in the web pages below, which include a cookbook, guidelines for more advanced analysis (how to perform manual flagging or change the sign of factors), data management, and a beta graphical user interface for online and offline use.
Author: Aiora Zabala [aut, cre] (Main author),
Maximilian Held [aut] (Author of additional data management functions)
Maintainer: Aiora Zabala <aiora.zabala@gmail.com>
Diff between qmethod versions 1.4.0 dated 2016-01-15 and 1.4.1 dated 2016-03-04
DESCRIPTION | 8 ++--- MD5 | 28 +++++++++--------- R/plot.QmethodRes.R | 5 ++- R/qbstep.R | 39 ++++++++++++-------------- R/qmb.plot.R | 73 ++++++++++++++++++++++++++++++++++--------------- R/qmb.summary.R | 10 ++++-- R/qmboots.R | 70 +++++++++++++++++++++++++--------------------- man/plot.QmethodRes.Rd | 4 ++ man/qbstep.Rd | 2 - man/qindtest.Rd | 3 -- man/qmb.plot.Rd | 25 ++++++++++------ man/qmb.summary.Rd | 2 - man/qmboots.Rd | 15 +++++++++- man/qmethod-package.Rd | 13 +++++++- man/qpcrustes.Rd | 2 - 15 files changed, 183 insertions(+), 116 deletions(-)
Title: Testing Workbench for Precision-Recall Curves
Description: A testing workbench for evaluating Precision-Recall curves under various conditions.
Author: Takaya Saito [aut, cre],
Marc Rehmsmeier [aut]
Maintainer: Takaya Saito <takaya.saito@outlook.com>
Diff between prcbench versions 0.2.0 dated 2016-01-11 and 0.3.1 dated 2016-03-04
DESCRIPTION | 10 +- MD5 | 30 +++--- NAMESPACE | 1 R/prcbench.R | 1 R/tool_java.R | 22 ++++ R/tool_zzz.R | 9 +- README.md | 69 ++++++++++----- inst/doc/introduction.Rmd | 8 - inst/doc/introduction.html | 157 +++++++++++++++++++--------------- inst/java/auc2.jar |binary java/README.md | 13 ++ java/auc2/bin/auc2/AUCWrapper.class |binary java/auc2/lib/auc.jar |binary java/auc2/src/auc2/AUCWrapper.java | 162 ++++++++++++++++++------------------ tests/testthat/test_plot_autoplot.R | 2 vignettes/introduction.Rmd | 8 - 16 files changed, 286 insertions(+), 206 deletions(-)
Title: Extract Text and Data from PDF Documents
Description: Utilities based on libpoppler for extracting text,
fonts, attachments and metadata from a pdf file. Also implements
rendering of PDF to bitmaps on supported platforms.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Diff between pdftools versions 0.1 dated 2016-02-25 and 0.2 dated 2016-03-04
DESCRIPTION | 14 ++++++++------ MD5 | 17 +++++++++-------- NEWS |only R/render.R | 18 ++++++++++-------- R/tools.R | 19 ++++++++++++------- configure | 16 ++++++++-------- man/pdf_render_page.Rd | 14 ++++++++------ man/pdftools.Rd | 20 +++++++++++++------- src/bindings.cpp | 2 +- src/init.cpp | 2 +- 10 files changed, 70 insertions(+), 52 deletions(-)
Title: Manipulation of Linear Systems of (in)Equalities
Description: Variable elimination (Gaussian elimination, Fourier-Motzkin elimination),
Moore-Penrose pseudoinverse, reduction to reduced row echelon form, value substitution,
projecting a vector on the convex polytope described by a system of (in)equations,
simplify systems by removing spurious columns and rows and collapse implied equalities,
test if a matrix is totally unimodilar, compute variable ranges implied by linear
(in)equalities.
Author: Mark van der Loo [aut, cre],
Edwin de Jonge [aut]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between lintools versions 0.1.0 dated 2016-01-22 and 0.1.1.1 dated 2016-03-04
lintools-0.1.0/lintools/man/sparseConstraints.Rd |only lintools-0.1.1.1/lintools/DESCRIPTION | 19 ++--- lintools-0.1.1.1/lintools/MD5 | 48 +++++++------ lintools-0.1.1.1/lintools/NAMESPACE | 8 +- lintools-0.1.1.1/lintools/NEWS | 9 ++ lintools-0.1.1.1/lintools/R/eliminate.R | 15 ++-- lintools-0.1.1.1/lintools/R/lintools-pkg.R | 1 lintools-0.1.1.1/lintools/R/pinv.R | 2 lintools-0.1.1.1/lintools/R/ranges.R |only lintools-0.1.1.1/lintools/R/spa.R | 6 - lintools-0.1.1.1/lintools/R/sparseConstraints.R | 45 +++++++----- lintools-0.1.1.1/lintools/R/unimodularity.R |only lintools-0.1.1.1/lintools/build/vignette.rds |binary lintools-0.1.1.1/lintools/inst/doc/project.R | 2 lintools-0.1.1.1/lintools/inst/doc/project.Rmd | 8 +- lintools-0.1.1.1/lintools/inst/doc/project.html | 23 ++---- lintools-0.1.1.1/lintools/man/allTotallyUnimodular.Rd |only lintools-0.1.1.1/lintools/man/eliminate.Rd | 5 + lintools-0.1.1.1/lintools/man/hellerTompkins.Rd |only lintools-0.1.1.1/lintools/man/is_totally_unimodular.Rd |only lintools-0.1.1.1/lintools/man/raghavachari.Rd |only lintools-0.1.1.1/lintools/man/ranges.Rd |only lintools-0.1.1.1/lintools/man/reduceMatrix.Rd |only lintools-0.1.1.1/lintools/man/sparse_constraints.Rd |only lintools-0.1.1.1/lintools/man/sparse_project.Rd | 4 - lintools-0.1.1.1/lintools/tests/testthat/test_eliminate.R | 18 ++++ lintools-0.1.1.1/lintools/tests/testthat/test_pinv.R | 7 + lintools-0.1.1.1/lintools/tests/testthat/test_ranges.R |only lintools-0.1.1.1/lintools/tests/testthat/test_spa.R | 4 - lintools-0.1.1.1/lintools/tests/testthat/test_unimodular.R |only lintools-0.1.1.1/lintools/vignettes/project.Rmd | 8 +- 31 files changed, 146 insertions(+), 86 deletions(-)
Title: Hypothesis Testing and Power Calculations for Comparing
Metagenomic Samples from HMP
Description: Using Dirichlet-Multinomial distribution to provide several functions for formal hypothesis testing, power and sample size calculations for human microbiome experiments.
Author: Patricio S. La Rosa, Elena Deych, Berkley Shands, William D. Shannon
Maintainer: Berkley Shands <rpackages@biorankings.com>
Diff between HMP versions 1.4.2 dated 2016-01-15 and 1.4.3 dated 2016-03-04
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 8 ++++++++ R/DM.MoM.R | 2 +- R/Xsc.onesample.R | 2 +- 5 files changed, 18 insertions(+), 10 deletions(-)
Title: Heteroscedastic Discriminant Analysis
Description: Functions to perform dimensionality reduction for classification if the covariance matrices of the classes are unequal.
Author: Gero Szepannek
Maintainer: Gero Szepannek <gero.szepannek@web.de>
Diff between hda versions 0.2-12 dated 2013-11-26 and 0.2-14 dated 2016-03-04
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NAMESPACE | 3 +++ man/hda.Rd | 2 +- man/showloadings.Rd | 2 +- 5 files changed, 13 insertions(+), 10 deletions(-)
Title: Tools for Analyzing QTL Experiments
Description: Analysis of experimental crosses to identify genes
(called quantitative trait loci, QTLs) contributing to variation in
quantitative traits.
Author: Karl W Broman <kbroman@biostat.wisc.edu> and Hao Wu, with
ideas from Gary Churchill and Saunak Sen and contributions from
Danny Arends, Robert Corty, Timothee Flutre, Ritsert Jansen, Pjotr
Prins, Lars Ronnegard, Rohan Shah, Laura Shannon, Quoc Tran, Aaron
Wolen, and Brian Yandell
Maintainer: Karl W Broman <kbroman@biostat.wisc.edu>
Diff between qtl versions 1.38-4 dated 2015-12-03 and 1.39-5 dated 2016-03-04
DESCRIPTION | 8 +++--- MD5 | 58 +++++++++++++++++++++++++------------------------- NAMESPACE | 1 R/est.rf.R | 21 ++++++++++++------ R/plot.scantwo.R | 10 +++++--- R/pull_stuff.R | 30 +++++++++++++++++++++++++ R/scantwo.R | 2 - R/viridis.R |only build/vignette.rds |binary data/badorder.RData |binary data/bristle3.RData |binary data/bristleX.RData |binary data/fake.4way.RData |binary data/fake.bc.RData |binary data/fake.f2.RData |binary data/hyper.RData |binary data/listeria.RData |binary data/locations.RData |binary data/map10.RData |binary data/mapthis.RData |binary data/multitrait.RData |binary inst/INSTALL_ME.txt | 16 ++++++------- inst/STATUS.txt | 27 ++++++++++++++++++++++- inst/TODO.txt | 5 +++- inst/doc/rqtltour.pdf |binary man/map2table.Rd | 2 - man/plot.rf.Rd | 20 +++++++++++------ man/plot.scantwo.Rd | 31 +++++++++++++------------- man/readMWril.Rd | 17 +++++++++----- man/table2map.Rd |only src/forwsel.c | 4 +-- 31 files changed, 167 insertions(+), 85 deletions(-)
Title: Algebraic Tools for the Analysis of Multiple Social Networks
Description: Algebraic procedures for the analysis of multiple social networks are delivered with
this package. Among other things, it is possible to create and manipulate multivariate network
data with different formats, and there are effective ways available to treat multiple networks
with routines that combine algebraic systems like the partially ordered semigroup or the
semiring structure together with the relational bundles occurring in different types of
multivariate network data sets. As well an algebraic approach for two-mode networks is made
through Galois derivations between families of the pair of subsets.
Author: Antonio Rivero Ostoic [aut, cre]
Maintainer: Antonio Rivero Ostoic <multiplex@post.com>
Diff between multiplex versions 1.7.1 dated 2015-09-03 and 1.8.1 dated 2016-03-04
multiplex-1.7.1/multiplex/build |only multiplex-1.7.1/multiplex/inst/doc/TwoModeNetworks.R |only multiplex-1.7.1/multiplex/inst/doc/TwoModeNetworks.Rnw |only multiplex-1.8.1/multiplex/DESCRIPTION | 35 +- multiplex-1.8.1/multiplex/MD5 | 49 +-- multiplex-1.8.1/multiplex/NAMESPACE | 1 multiplex-1.8.1/multiplex/R/as.signed.R | 24 + multiplex-1.8.1/multiplex/R/bundle.census.R | 2 multiplex-1.8.1/multiplex/R/bundles.R | 204 +++++++------ multiplex-1.8.1/multiplex/R/coor.R |only multiplex-1.8.1/multiplex/R/diagram.levels.R | 80 +++-- multiplex-1.8.1/multiplex/R/ngbs.R | 10 multiplex-1.8.1/multiplex/R/perm.R | 51 ++- multiplex-1.8.1/multiplex/R/print.gml.R |only multiplex-1.8.1/multiplex/R/read.gml.R | 188 ++++++++---- multiplex-1.8.1/multiplex/R/reduc.R | 43 ++ multiplex-1.8.1/multiplex/R/reducs.R | 4 multiplex-1.8.1/multiplex/R/rel.sys.R | 248 ++++++++++------- multiplex-1.8.1/multiplex/R/rm.isol.R | 1 multiplex-1.8.1/multiplex/R/signed.R | 122 ++------ multiplex-1.8.1/multiplex/inst/CHANGELOG | 30 +- multiplex-1.8.1/multiplex/man/as.signed.Rd | 5 multiplex-1.8.1/multiplex/man/bundles.Rd | 4 multiplex-1.8.1/multiplex/man/coor.Rd |only multiplex-1.8.1/multiplex/man/multiplex-package.Rd | 6 multiplex-1.8.1/multiplex/man/perm.Rd | 5 multiplex-1.8.1/multiplex/man/print.gml.Rd |only multiplex-1.8.1/multiplex/man/read.gml.Rd | 12 multiplex-1.8.1/multiplex/man/rel.sys.Rd | 11 29 files changed, 677 insertions(+), 458 deletions(-)
Title: Semiparametric Copula Bivariate Regression Models
Description: Routines for fitting copula bivariate models for binary and continuous responses with linear and nonlinear effects in the presence of associated error equations, endogeneity, non-random sample selection or partial observability.
Author: Giampiero Marra <giampiero.marra@ucl.ac.uk> and Rosalba Radice <r.radice@bbk.ac.uk>
Maintainer: Giampiero Marra <giampiero.marra@ucl.ac.uk>
Diff between SemiParBIVProbit versions 3.6-1 dated 2015-12-07 and 3.7 dated 2016-03-04
ChangeLog | 5 DESCRIPTION | 12 MD5 | 161 +-- NAMESPACE | 19 R/AT.r | 260 ++--- R/AT2.r | 118 -- R/BCDF.r | 23 R/BiCDF.r | 14 R/LM.bpm.r | 8 R/OR.r | 198 +--- R/RR.r | 201 ++-- R/S.m.r | 36 R/SemiParBIVProbit.fit.R | 98 + R/SemiParBIVProbit.fit.post.r | 111 +- R/SemiParBIVProbit.r | 474 +++++---- R/adjCov.r | 114 ++ R/adjCovSD.r | 129 ++ R/bcont.R |only R/bcont23.R |only R/bcont3.R |only R/bcont32.R |only R/bprobgHs.r | 72 - R/bprobgHsCont.r | 78 - R/bprobgHsCont3.r | 91 - R/bprobgHsContUniv.r | 182 ++- R/bprobgHsContUniv3.r | 240 +++- R/bprobgHsPO.r | 49 R/bprobgHsPO0.r | 31 R/bprobgHsSS.r | 57 - R/conv.check.r | 4 R/copgHs.r | 609 ++++++------ R/copgHs2.r | 78 - R/copgHsAT.r | 187 +++ R/copgHsCont.r | 1640 +++++++++++++++++++++++++++++++-- R/copulaReg.fit.post.r |only R/copulaReg.r |only R/distrHs.r | 1816 ++++++++++++++++++++----------------- R/distrHsAT.r | 135 +- R/esp.tr.R |only R/eta.tr.R |only R/gt.bpm.R | 4 R/jc.probs.r |only R/logLik.SemiParBIVProbit.r | 2 R/numch.r |only R/numgh.r |only R/pen.r | 110 +- R/plot.SemiParBIVProbit.r | 24 R/polys.setup.r | 2 R/post.check.R | 57 - R/predict.SemiParBIVProbit.r | 8 R/prev.r | 46 R/print.AT.r | 27 R/print.OR.r | 22 R/print.RR.r | 19 R/print.SemiParBIVProbit.r | 155 +-- R/print.copulaReg.r |only R/print.summary.SemiParBIVProbit.r | 155 +-- R/print.summary.copulaReg.r |only R/probm.R |only R/regH.r | 19 R/resp.check.R | 126 +- R/summary.SemiParBIVProbit.r | 291 +---- R/summary.copulaReg.r |only R/teta.tr.R |only R/working.comp.r | 27 man/AT.Rd | 41 man/AT2.Rd | 8 man/LM.bpm.Rd | 6 man/OR.Rd | 30 man/RR.Rd | 30 man/SemiParBIVProbit-package.Rd | 16 man/SemiParBIVProbit.Rd | 168 ++- man/bcont.Rd |only man/bcont23.Rd |only man/bcont3.Rd |only man/bcont32.Rd |only man/bprobgHs.Rd | 2 man/bprobgHsCont.Rd | 2 man/bprobgHsCont3.Rd | 2 man/bprobgHsSS.Rd | 2 man/copulaReg.Rd |only man/copulaReg.fit.post.Rd |only man/copulaRegObject.Rd |only man/esp.tr.Rd |only man/eta.tr.Rd |only man/gt.bpm.Rd | 4 man/jc.probs.Rd |only man/logLik.SemiParBIVProbit.Rd | 4 man/numch.Rd |only man/numgh.Rd |only man/post.check.Rd | 12 man/print.copulaReg.Rd |only man/print.summary.copulaReg.Rd |only man/probm.Rd |only man/resp.check.Rd | 13 man/summary.SemiParBIVProbit.Rd | 3 man/summary.copulaReg.Rd |only man/teta.tr.Rd |only 98 files changed, 5567 insertions(+), 3120 deletions(-)
More information about SemiParBIVProbit at CRAN
Permanent link
Title: R Graphics Devices for Vector Graphics Output
Description: Vector Graphics devices for 'SVG', 'DrawingML' for
Microsoft Word and 'DrawingML' for Microsoft PowerPoint.
Author: David Gohel [aut, cre],
Bob Rudis [ctb] (the javascript code used by function set_attr),
Francois Brunetti [ctb] (clipping algorithms)
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between rvg versions 0.0.7 dated 2016-02-24 and 0.0.8 dated 2016-03-04
rvg-0.0.7/rvg/R/interactivePointsGrob.R |only rvg-0.0.7/rvg/R/interactivePolygonGrob.R |only rvg-0.0.7/rvg/R/interactivePolylineGrob.R |only rvg-0.0.7/rvg/R/interactiveRectGrob.R |only rvg-0.0.7/rvg/R/interactiveSegmentsGrob.R |only rvg-0.0.7/rvg/R/interactiveTextGrob.R |only rvg-0.0.7/rvg/man/drawDetails.interactivePointsGrob.Rd |only rvg-0.0.7/rvg/man/drawDetails.interactivePolygonGrob.Rd |only rvg-0.0.7/rvg/man/drawDetails.interactivePolylineGrob.Rd |only rvg-0.0.7/rvg/man/drawDetails.interactiveRectGrob.Rd |only rvg-0.0.7/rvg/man/drawDetails.interactiveSegmentsGrob.Rd |only rvg-0.0.7/rvg/man/drawDetails.interactiveTextGrob.Rd |only rvg-0.0.7/rvg/man/interactivePointsGrob.Rd |only rvg-0.0.7/rvg/man/interactivePolygonGrob.Rd |only rvg-0.0.7/rvg/man/interactivePolylineGrob.Rd |only rvg-0.0.7/rvg/man/interactiveRectGrob.Rd |only rvg-0.0.7/rvg/man/interactiveSegmentsGrob.Rd |only rvg-0.0.7/rvg/man/interactiveTextGrob.Rd |only rvg-0.0.7/rvg/man/send_click.Rd |only rvg-0.0.7/rvg/man/send_tooltip.Rd |only rvg-0.0.7/rvg/man/set_data_id.Rd |only rvg-0.0.8/rvg/DESCRIPTION | 14 - rvg-0.0.8/rvg/MD5 | 48 +--- rvg-0.0.8/rvg/NAMESPACE | 16 - rvg-0.0.8/rvg/NEWS | 7 rvg-0.0.8/rvg/R/RcppExports.R | 12 - rvg-0.0.8/rvg/R/utils.R | 71 ------ rvg-0.0.8/rvg/src/RcppExports.cpp | 39 --- rvg-0.0.8/rvg/src/body_pr.cpp | 9 rvg-0.0.8/rvg/src/clipper.cpp | 43 ---- rvg-0.0.8/rvg/src/clipper.h | 5 rvg-0.0.8/rvg/src/docx.cpp | 14 - rvg-0.0.8/rvg/src/dsvg.cpp | 71 ------ rvg-0.0.8/rvg/src/pptx.cpp | 31 +- rvg-0.0.8/rvg/tests/testthat/test-dml-editable.R |only rvg-0.0.8/rvg/tests/testthat/test-svg-interactive.R | 161 --------------- 36 files changed, 79 insertions(+), 462 deletions(-)
Title: Protracted Birth-Death Model of Diversification
Description: Conducts maximum likelihood analysis and simulation of the protracted speciation model.
Author: Rampal S. Etienne
Maintainer: Rampal S. Etienne <r.s.etienne@rug.nl>
Diff between PBD versions 1.1 dated 2015-09-29 and 1.2 dated 2016-03-04
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/pbd_ML.R | 10 +++++++--- R/pbd_loglik.R | 9 ++++++--- R/pbd_loglik_choosepar.R | 2 +- R/pbd_sim.R | 41 +++++++++++++++++++++++++++++++++-------- R/pbd_utils.R | 19 +++++++++++++++---- man/PBD-package.Rd | 6 ++++-- man/pbd_ML.Rd | 6 ++++-- man/pbd_sim.Rd | 10 +++++++--- 10 files changed, 90 insertions(+), 39 deletions(-)
Title: Discovering Multiple, Statistically-Equivalent Signatures
Description: Feature selection methods for identifying minimal, statistically-equivalent and equally-predictive feature subsets.
The package name 'MXM' stands for "Mens eX Machina", meaning "Mind from the Machine" in Latin.
Author: Ioannis Tsamardinos, Vincenzo Lagani, Giorgos Athineou, Michail Tsagris, Giorgos Borboudakis
Maintainer: Michail Tsagris <mtsagris@csd.uoc.gr>
Diff between MXM versions 0.5 dated 2015-09-29 and 0.7 dated 2016-03-04
DESCRIPTION | 21 +- MD5 | 97 ++++++++---- NAMESPACE | 71 ++++---- R/MMPC.R |only R/MMPC.temporal.R |only R/MMPC.temporal.output_script.R |only R/MMPCoutput_script.R |only R/SES.R | 304 ++++++++++++++++++++++++++++---------- R/SES.temporal.R |only R/SES.temporal.opoutput_script.R |only R/SESoutput_script.R | 12 + R/cat.ci.R |only R/censIndLR.R | 33 +--- R/condi.R |only R/cv.ses.R | 194 ++++++++++++++++++++++-- R/gSquare.R | 33 +--- R/mmhc.skel.R |only R/model.R |only R/nei.R |only R/pc.con.R |only R/pc.skel.R |only R/plota.R |only R/reg.fit.R |only R/ridge.plot.R |only R/ridge.reg.R |only R/ridgereg.cv.R |only R/testIndBeta.R | 39 ++-- R/testIndFisher.R | 20 +- R/testIndGLMM.R |only R/testIndLogistic.R | 62 +++---- R/testIndMVreg.R |only R/testIndNB.R | 18 -- R/testIndPois.R | 18 -- R/testIndRQ.R | 45 +++-- R/testIndReg.R | 72 +++++---- R/testIndSpearman.R |only R/testIndZIP.R |only man/MMPC.temporal.output-class.Rd |only man/MMPCoutput-class.Rd |only man/MXM-internal.Rd | 24 ++- man/MXM-package.Rd | 13 - man/MXMCondIndTests.Rd | 91 ++++++++--- man/SES.Rd | 144 +++++++++++------- man/SES.temporal.Rd |only man/SES.temporal.output-class.Rd |only man/SESoutput-class.Rd | 5 man/censIndLR.Rd | 45 +++-- man/cv.ses.Rd | 70 ++++++-- man/gSquare.Rd | 84 ++++++---- man/mmhc.skel.Rd |only man/model.Rd |only man/nei.Rd |only man/pc.skel.Rd |only man/plota.Rd |only man/reg.fit.Rd |only man/ridge.plot.Rd |only man/ridge.reg.Rd |only man/ridgereg.cv.Rd |only man/testIndBeta.Rd | 37 +++- man/testIndFisher.Rd | 50 +++--- man/testIndGLMM.Rd |only man/testIndLogistic.Rd | 72 +++++---- man/testIndMVReg.Rd |only man/testIndNB.Rd | 38 +++- man/testIndPois.Rd | 31 ++- man/testIndRQ.Rd | 40 +++-- man/testIndReg.Rd | 34 ++-- man/testIndSpearman.Rd |only man/testIndZIP.Rd |only 69 files changed, 1201 insertions(+), 616 deletions(-)
Title: Dot-and-Whisker Plots of Regression Results
Description: Quick and easy dot-and-whisker plots of regression results.
Author: Frederick Solt <frederick-solt@uiowa.edu>, Yue Hu <yue-hu-1@uiowa.edu>
Maintainer: Yue Hu <yue-hu-1@uiowa.edu>
Diff between dotwhisker versions 0.2.0.4 dated 2016-02-15 and 0.2.0.5 dated 2016-03-04
DESCRIPTION | 12 ++++---- MD5 | 34 ++++++++++++------------ NAMESPACE | 2 - NEWS.md | 4 ++ R/add_brackets.R | 15 +++++----- R/dwplot.R | 2 - R/relabel_y_axis.R | 2 - README.md | 2 - inst/doc/dotwhisker-vignette.R | 9 +++--- inst/doc/dotwhisker-vignette.Rmd | 11 ++++---- inst/doc/dotwhisker-vignette.html | 52 +++++++++++++++++++------------------- inst/doc/dwplot-vignette.R | 8 ++--- inst/doc/kl2007_examples.R | 10 +++---- inst/doc/kl2007_examples.Rmd | 10 +++---- inst/doc/kl2007_examples.html | 31 ++++++++++------------ man/add_brackets.Rd | 11 +++----- vignettes/dotwhisker-vignette.Rmd | 11 ++++---- vignettes/kl2007_examples.Rmd | 10 +++---- 18 files changed, 119 insertions(+), 117 deletions(-)
Title: Tools for the Reading and Tokenization of R Code
Description: Tools for the reading and tokenization of R code.
The 'sourcetools' package provides both an R and C++ interface
for the tokenization of R code, and helpers for interacting
with the tokenized representation of R code.
Author: Kevin Ushey
Maintainer: Kevin Ushey <kevinushey@gmail.com>
Diff between sourcetools versions 0.1.0 dated 2016-03-03 and 0.1.1 dated 2016-03-04
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- inst/include/sourcetools/tokenization/Registration.h | 4 ++-- inst/include/sourcetools/tokenization/Token.h | 6 +++--- inst/include/sourcetools/tokenization/Tokenizer.h | 14 +++++++------- tests/testthat/test-tokenize.R | 6 +++--- 6 files changed, 23 insertions(+), 23 deletions(-)
Title: SA Counterparty Credit Risk under Basel III
Description: Computes the Exposure-At-Default based on standardized approach
of the Basel III Regulatory framework (SA-CCR). Currently, trade types of all
the five major asset classes have been created and, given the inheritance-
based structure of the application, the addition of further trade types is
straightforward. The application automatically separates the trades on the
corresponding hedging and netting sets including the basis and volatility
transactions. All the examples appearing on the regulatory paper (including the
margined and the un-margined workflow) have been implemented.
Author: Tasos Grivas
Maintainer: Tasos Grivas <info@openriskcalculator.com>
Diff between SACCR versions 1.1 dated 2015-12-27 and 1.5 dated 2016-03-04
DESCRIPTION | 30 ++++++++++++++++++------------ MD5 | 42 +++++++++++++++++++++++++----------------- NAMESPACE | 6 +++++- R/CalcAddon.R | 16 ++++++++++------ R/Commodity.R | 23 +++++++++++++++++++---- R/ExampleBasisVol.R |only R/ExampleFX.R | 4 ++-- R/HandleBasisVol.R |only R/IRD.R | 42 ++++++++++++++++++++++++++++++------------ R/Swap.R |only R/Trade.R | 7 +++++-- R/Vol.R |only R/runExampleCalcs.R | 2 +- man/CSA-class.Rd | 1 - man/CalcAddon.Rd | 4 +++- man/CommSwap-class.Rd |only man/Commodity-class.Rd | 1 - man/CreditIndex-class.Rd | 1 - man/CreditSingle-class.Rd | 1 - man/ExampleBasisVol.Rd |only man/ExampleFX.Rd | 2 +- man/FXSwap-class.Rd | 1 - man/HandleBasisVol.Rd |only man/IRDSwap-class.Rd | 1 - man/IRDSwapVol-class.Rd |only man/IRDSwaption-class.Rd | 1 - 26 files changed, 119 insertions(+), 66 deletions(-)
Title: Client for the HuffPost Pollster API
Description: Client for the HuffPost Pollster API, which provides
access to U.S. opinion polls since 2004.
Author: Jeffrey B. Arnold [aut, cre],
Thomas J. Leeper [aut],
Drew Linzer [aut]
Maintainer: Jeffrey B. Arnold <jeffrey.arnold@gmail.com>
Diff between pollstR versions 1.2.1 dated 2015-07-01 and 1.2.2 dated 2016-03-04
pollstR-1.2.1/pollstR/R/pollstR-package.R |only pollstR-1.2.2/pollstR/DESCRIPTION | 18 pollstR-1.2.2/pollstR/MD5 | 33 - pollstR-1.2.2/pollstR/NAMESPACE | 2 pollstR-1.2.2/pollstR/NEWS | 5 pollstR-1.2.2/pollstR/R/polls.R | 4 pollstR-1.2.2/pollstR/R/pollstr-package.R |only pollstR-1.2.2/pollstR/build/vignette.rds |binary pollstR-1.2.2/pollstR/inst/doc/introduction.Rmd | 166 +++--- pollstR-1.2.2/pollstR/inst/doc/introduction.html | 261 +++++----- pollstR-1.2.2/pollstR/inst/vign-src/figures |only pollstR-1.2.2/pollstR/inst/vign-src/introduction.md |only pollstR-1.2.2/pollstR/man/pollstR.Rd | 4 pollstR-1.2.2/pollstR/man/pollstr_chart.Rd | 2 pollstR-1.2.2/pollstR/man/pollstr_charts.Rd | 2 pollstR-1.2.2/pollstR/man/pollstr_polls.Rd | 2 pollstR-1.2.2/pollstR/vignettes/assets/obama-favorable-chart-1.png |binary pollstR-1.2.2/pollstR/vignettes/assets/obama-favorable-chart-2-1.png |binary pollstR-1.2.2/pollstR/vignettes/introduction.Rmd | 166 +++--- 19 files changed, 367 insertions(+), 298 deletions(-)
Title: Network Estimation for Time Series
Description: Sparse VAR estimation based on LASSO.
Author: Christian Brownlees
Maintainer: Christian Brownlees <christian.brownlees@upf.edu>
Diff between nets versions 0.1 dated 2013-03-04 and 0.8 dated 2016-03-04
nets-0.1/nets/demo/granger_network.R |only nets-0.1/nets/demo/lrparcor_network.R |only nets-0.1/nets/demo/parcor_network.R |only nets-0.8/nets/CHANGELOG | 12 nets-0.8/nets/DESCRIPTION | 17 nets-0.8/nets/MD5 | 23 nets-0.8/nets/NAMESPACE | 7 nets-0.8/nets/R/nets.R | 464 +++++++------- nets-0.8/nets/README |only nets-0.8/nets/demo/00Index | 6 nets-0.8/nets/demo/granger.R |only nets-0.8/nets/demo/nets.R |only nets-0.8/nets/demo/partial_correlation.R |only nets-0.8/nets/man/nets-package.Rd | 16 nets-0.8/nets/man/nets.Rd | 153 +++- nets-0.8/nets/src/nets.c | 989 ++++++++++++++++++++----------- 16 files changed, 1061 insertions(+), 626 deletions(-)
Title: Client for 'Turfjs' for 'Geospatial' Analysis
Description: Client for 'Turfjs' (http://turfjs.org/) for
'geospatial' analysis. The package revolves around using 'GeoJSON'
data. Functions are included for creating 'GeoJSON' data objects,
measuring aspects of 'GeoJSON', and combining, transforming,
and creating random 'GeoJSON' data objects.
Author: Scott Chamberlain [aut, cre],
Jeff Hollister [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between lawn versions 0.1.4 dated 2015-08-24 and 0.1.6 dated 2016-03-04
DESCRIPTION | 7 LICENSE | 2 MD5 | 165 +++---- NAMESPACE | 2 NEWS | 8 R/centroid.R | 2 R/zzz.R | 43 + build/vignette.rds |binary inst/doc/lawn_vignette.html | 10 inst/js/LICENSE-geojsonhint |only inst/js/geojsonhint.js | 905 ++++++++++++++++++++++-------------------- man/as.turf.Rd | 2 man/as_feature.Rd | 2 man/data-types.Rd | 2 man/georandom.Rd | 2 man/lawn-package.Rd | 2 man/lawn_aggregate.Rd | 11 man/lawn_along.Rd | 24 - man/lawn_area.Rd | 24 - man/lawn_average.Rd | 10 man/lawn_bbox_polygon.Rd | 22 - man/lawn_bearing.Rd | 22 - man/lawn_bezier.Rd | 10 man/lawn_buffer.Rd | 11 man/lawn_center.Rd | 22 - man/lawn_centroid.Rd | 24 - man/lawn_combine.Rd | 2 man/lawn_concave.Rd | 10 man/lawn_convex.Rd | 10 man/lawn_count.Rd | 10 man/lawn_data.Rd | 2 man/lawn_destination.Rd | 20 man/lawn_deviation.Rd | 10 man/lawn_distance.Rd | 22 - man/lawn_envelope.Rd | 22 - man/lawn_erase.Rd | 10 man/lawn_explode.Rd | 2 man/lawn_extent.Rd | 22 - man/lawn_featurecollection.Rd | 10 man/lawn_filter.Rd | 10 man/lawn_flip.Rd | 2 man/lawn_hex_grid.Rd | 10 man/lawn_inside.Rd | 4 man/lawn_intersect.Rd | 11 man/lawn_isolines.Rd | 11 man/lawn_jenks.Rd | 6 man/lawn_kinks.Rd | 2 man/lawn_line_distance.Rd | 20 man/lawn_line_slice.Rd | 2 man/lawn_linestring.Rd | 10 man/lawn_max.Rd | 10 man/lawn_median.Rd | 10 man/lawn_merge.Rd | 12 man/lawn_midpoint.Rd | 22 - man/lawn_min.Rd | 10 man/lawn_nearest.Rd | 7 man/lawn_planepoint.Rd | 10 man/lawn_point.Rd | 10 man/lawn_point_grid.Rd | 10 man/lawn_point_on_line.Rd | 2 man/lawn_point_on_surface.Rd | 20 man/lawn_polygon.Rd | 11 man/lawn_quantile.Rd | 6 man/lawn_random.Rd | 10 man/lawn_reclass.Rd | 6 man/lawn_remove.Rd | 10 man/lawn_sample.Rd | 10 man/lawn_simplify.Rd | 10 man/lawn_size.Rd | 22 - man/lawn_square.Rd | 22 - man/lawn_square_grid.Rd | 10 man/lawn_sum.Rd | 10 man/lawn_tag.Rd | 4 man/lawn_tin.Rd | 12 man/lawn_triangle_grid.Rd | 12 man/lawn_union.Rd | 11 man/lawn_variance.Rd | 10 man/lawn_within.Rd | 4 man/pipe.Rd | 2 man/print-methods.Rd | 2 man/type_sum.Rd | 2 man/view.Rd | 2 tests/testthat/test-count.R | 1 tests/testthat/test-sample.R | 2 84 files changed, 1012 insertions(+), 876 deletions(-)
Title: Statistical Analysis of Monthly Background Checks of Gun
Purchases
Description: Statistical analysis of monthly background checks of gun purchases for the New York Times
story "What Drives Gun Sales: Terrorism, Obama and Calls for Restrictions" at
<http://www.nytimes.com/interactive/2015/12/10/us/gun-sales-terrorism-obama-restrictions.html?> is provided.
Author: Gregor Aisch, Josh Keller and Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between gunsales versions 0.1.0 dated 2016-02-28 and 0.1.1 dated 2016-03-04
DESCRIPTION | 11 ++++++----- MD5 | 29 +++++++++++++++-------------- NAMESPACE | 6 ++++-- R/analysis.R | 32 ++++++++++++++++++-------------- R/checkOS.R |only R/ggplot.R | 16 ++++++++-------- R/init.R | 4 ++++ R/plot.R | 12 ++++++------ README.md | 20 +++++++++++--------- inst/doc/gunsales.R | 21 +++++++++++++++------ inst/doc/gunsales.Rmd | 18 +++++++++++++++--- inst/doc/gunsales.html | 4 ++-- man/analysis.Rd | 14 +++++++++----- man/ggplot_gunsales.Rd | 6 +++--- man/plot_gunsales.Rd | 6 +++--- vignettes/gunsales.Rmd | 18 +++++++++++++++--- 16 files changed, 134 insertions(+), 83 deletions(-)
Title: Generalized Structured Component Analysis (GSCA)
Description: Fit a variety of component-based structural equation models.
Author: Heungsun Hwang, Sunmee Kim, Sungyoung Lee, Taesung Park
Maintainer: Sunmee Kim <sunmee.kim@mail.mcgill.ca>
Diff between gesca versions 1.0 dated 2016-03-02 and 1.0.1 dated 2016-03-04
DESCRIPTION | 8 ++++---- MD5 | 5 +++-- NAMESPACE | 4 +++- man/summary.gesca.Rd |only 4 files changed, 10 insertions(+), 7 deletions(-)
Title: Bayesian Fertility Projection
Description: Making probabilistic projections of total fertility rate for all countries of the world, using a Bayesian hierarchical model.
Author: Hana Sevcikova (hanas@uw.edu), Leontine Alkema (alkema@nus.edu.sg), Adrian Raftery (raftery@uw.edu) with code contribution from Bailey Fosdick (bfosdick@uw.edu) and Patrick Gerland (gerland@un.org)
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between bayesTFR versions 5.0-0 dated 2015-12-05 and 5.0-1 dated 2016-03-04
ChangeLog | 7 ++++++- DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/predict_tfr.R | 25 +++++++++++++++++++++---- man/bayesTFR-package.Rd | 4 ++-- 5 files changed, 37 insertions(+), 15 deletions(-)