Title: Easy Handling Discrete Time Markov Chains
Description: Functions and S4 methods to create and manage discrete time Markov chains (DTMC) more easily. In addition functions to perform statistical (fitting and drawing random variates) and probabilistic (analysis of DTMC proprieties) analysis are provided.
Author: Giorgio Alfredo Spedicato [aut,cre], Tae Seung Kang [aut], Sai Bhargav Yalamanchi [aut], Mildenberger Thoralf [ctb]
Maintainer: Giorgio Alfredo Spedicato <spedicato_giorgio@yahoo.it>
Diff between markovchain versions 0.4.3 dated 2015-11-26 and 0.4.3.1 dated 2016-03-05
ChangeLog | 5 + DESCRIPTION | 11 +- MD5 | 50 +++++----- NAMESPACE | 3 NEWS | 7 - R/0_classesAndMethods.R | 3 R/1_functions4Fitting.R | 24 ++--- data/blanden.rda |binary data/craigsendi.rda |binary data/holson.rda |binary data/preproglucacon.rda |binary data/rain.rda |binary inst/doc/an_introduction_to_markovchain_package.pdf |binary inst/doc/markovchainCrashIntro.pdf |binary man/randomSampler.Rd | 5 - src/2_probabilistic.cpp | 96 ++++++++++++++++---- tests/testthat/testBasic1.R | 2 tests/testthat/testHigerOrder.R | 2 tests/testthat/testInference.R | 2 tests/testthat/testMultinomCI.R | 2 tests/testthat/testParallelBootstrap.R | 2 tests/testthat/testPeriod.R | 2 tests/testthat/testPlot.R | 2 tests/testthat/testRecurrentClasses.R | 56 +++++------ tests/testthat/testetm.R | 2 tests/testthat/testmsm.R | 2 26 files changed, 176 insertions(+), 102 deletions(-)
Title: Interface to the 'HDF5' Library
Description: S4 Interface to the 'HDF5' library supporting fast storage and
retrieval of R-objects like vectors, matrices and arrays to binary files in
a language independent format. The 'HDF5' format can therefore be used as
an alternative to R's save/load mechanism. Since h5 is able to access only
subsets of stored data it can also handle data sets which do not fit into
memory.
Author: Mario Annau [aut, cre]
Maintainer: Mario Annau <mario.annau@gmail.com>
Diff between h5 versions 0.9.4 dated 2015-10-12 and 0.9.5 dated 2016-03-05
DESCRIPTION | 10 +++++----- MD5 | 38 ++++++++++++++++++++++---------------- R/Attribute.R | 2 +- R/DataSet.R | 8 ++------ R/DataSpace.R | 1 - R/H5Group.R | 2 +- inst/NEWS.Rd | 10 ++++++++++ inst/test-ascii-length-bug.h5 |only inst/test-ascii-length-bug.py |only man/Attribute.Rd | 2 +- man/DataSet.Rd | 16 ++++------------ man/DataSpace.Rd | 3 --- man/H5Group.Rd | 2 +- src/Dataset.cpp | 3 +++ src/Helpers.cpp | 2 +- tests/testthat/test-DataSet-IO.R | 15 +++++++++++++++ tests/testthat/test-DataSet.R | 2 +- tests/testthat/test-H5File.R | 12 ++++++------ tests/testthat/test-H5Group.R | 2 +- vignettes |only 20 files changed, 74 insertions(+), 56 deletions(-)
Title: Discover Probable Duplicates in Plant Genetic Resources
Collections
Description: Provides functions to aid the identification of probable/possible
duplicates in Plant Genetic Resources (PGR) collections using
'passport databases' comprising of information records of each constituent
sample. These include methods for cleaning the data, creation of a
searchable Key Word in Context (KWIC) index of keywords associated with
sample records and the identification of nearly identical records with
similar information by fuzzy, phonetic and semantic matching of keywords.
Author: J. Aravind [aut, cre],
J. Radhamani [aut],
Kalyani Srinivasan [aut],
B. Ananda Subhash [aut],
R. K. Tyagi [aut]
Maintainer: J. Aravind <j.aravind@icar.gov.in>
Diff between PGRdup versions 0.2.1 dated 2015-07-23 and 0.2.2 dated 2016-03-05
DESCRIPTION | 23 +-- MD5 | 93 +++++++------ NAMESPACE | 33 ++++ NEWS |only R/AddProbDup.R | 45 +++--- R/DataClean.R | 16 +- R/DisProbDup.R | 43 +++--- R/DoubleMetaphone.R | 18 +- R/KWCounts.R | 24 +-- R/KWIC.R | 40 ++--- R/MergeKW.R | 53 ++++--- R/MergeProbDup.R | 13 - R/PGRdup-package.R | 1 R/ParseProbDup.R | 28 ++-- R/ProbDup.R | 309 +++++++++++++++++++++++---------------------- R/ReconstructProbDup.R | 94 ++++++------- R/ReviewProbDup.R | 114 +++++++++------- R/SplitProbDup.R | 81 ++++++----- R/ValidatePrimKey.R | 18 +- R/ViewProbDup.R |only R/globals.R | 23 ++- R/print.KWIC.R | 5 R/print.ProbDup.R | 10 - R/read.genesys.R |only README.md | 26 ++- build/vignette.rds |binary inst/CITATION | 2 inst/doc/Introduction.Rmd | 178 +++++++++++++++---------- inst/doc/Introduction.pdf |binary man/AddProbDup.Rd | 58 ++++---- man/DataClean.Rd | 72 +++++----- man/DisProbDup.Rd | 42 +++--- man/DoubleMetaphone.Rd | 14 +- man/GN1000.Rd | 14 +- man/KWCounts.Rd | 32 ++-- man/KWIC.Rd | 40 ++--- man/MergeKW.Rd | 38 ++--- man/MergeProbDup.Rd | 18 +- man/PGRdup-package.Rd | 10 - man/ParseProbDup.Rd | 40 ++--- man/ProbDup.Rd | 197 ++++++++++++++-------------- man/ReconstructProbDup.Rd | 38 ++--- man/ReviewProbDup.Rd | 100 +++++++------- man/SplitProbDup.Rd | 24 +-- man/ValidatePrimKey.Rd | 36 ++--- man/ViewProbDup.Rd |only man/print.KWIC.Rd | 4 man/print.ProbDup.Rd | 4 man/read.genesys.Rd |only vignettes/Introduction.Rmd | 178 +++++++++++++++---------- 50 files changed, 1216 insertions(+), 1033 deletions(-)
Title: Format R Code Automatically
Description: Provides a function tidy_source() to format R source code. Spaces
and indent will be added to the code automatically, and comments will be
preserved under certain conditions, so that R code will be more
human-readable and tidy. There is also a Shiny app as a user interface in
this package (see tidy_app()).
Author: Yihui Xie
Maintainer: Yihui Xie <xie@yihui.name>
Diff between formatR versions 1.2.1 dated 2015-09-18 and 1.3 dated 2016-03-05
DESCRIPTION | 9 +++--- MD5 | 20 +++++++-------- NEWS | 10 +++++++ R/usage.R | 13 ++++------ R/utils.R | 8 +++--- build/vignette.rds |binary inst/doc/formatR.R | 3 ++ inst/doc/formatR.Rmd | 45 ++++++++-------------------------- inst/doc/formatR.html | 65 +++++++++++++------------------------------------- man/usage.Rd | 2 - vignettes/formatR.Rmd | 45 ++++++++-------------------------- 11 files changed, 80 insertions(+), 140 deletions(-)
Title: MA Birk's Functions
Description: Collection of tools to make R more convenient. Includes tools to
convert between units and dimensions of measurement and to summarize data
using statistics not available with base R.
Author: Matthew A. Birk
Maintainer: Matthew A. Birk <matthewabirk@gmail.com>
Diff between birk versions 2.0.0 dated 2016-01-18 and 2.1.0 dated 2016-03-05
DESCRIPTION | 15 +++++++-------- MD5 | 12 ++++++------ NEWS | 15 ++++----------- R/birk.R | 2 +- R/conv_unit.R | 19 ++++++++++++++----- man/birk.Rd | 2 +- man/conv_unit.Rd | 7 ++++--- 7 files changed, 37 insertions(+), 35 deletions(-)